BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035817
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 8 PLP----AYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPV 63
PLP A +EE ++ N E ++ D+ + E H +L+ +L + +
Sbjct: 9 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ----------HPLLQPKMRAILLDWLM 58
Query: 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRD---- 119
+ + KL YLA + FDR+++ + + V+ + L S L +A K+ +
Sbjct: 59 EVCEVYKLHRETFYLAQDFFDRYMATQE-----NVVKTLLQLIGISSLFIAAKLEEIYPP 113
Query: 120 --NSFSVPEFLGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEM 168
+ F+ ++ D +L MEL I++ LKW++ +T + + ++++
Sbjct: 114 KLHQFA---YVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQV 161
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 49 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 100
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 101 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVE 160
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIAA+A
Sbjct: 161 SLAMFLGELSLIDADPYLKYLPSVIAAAA 189
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 49 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 100
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 101 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVE 160
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIAA+A
Sbjct: 161 SLAMFLGELSLIDADPYLKYLPSVIAAAA 189
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 49 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 100
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 101 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVE 160
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIAA+A
Sbjct: 161 SLAMFLGELSLIDADPYLKYLPSVIAAAA 189
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 63 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 114
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ P +E + + D
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PSVIAA+A
Sbjct: 175 DPYLKYLPSVIAAAA 189
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPE-----FLGKW 131
+LA+N DRF+S + +R + L + + LA K + PE ++
Sbjct: 62 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--IYPPEVAEFVYITDD 113
Query: 132 NLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN 190
K +L+ME +L+ L + + A T L ++F+ + P +E + + D
Sbjct: 114 TYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDA 173
Query: 191 ISFTRFRPSVIAASA 205
+ ++ PS+IA +A
Sbjct: 174 DPYLKYLPSLIAGAA 188
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 52 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 103
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 104 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 163
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 164 SLAMFLGELSLIDADPYLKYLPSVIAGAA 192
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 46 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 97
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 98 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 157
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 158 SLAMFLGELSLIDADPYLKYLPSVIAGAA 186
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRD-NSFSVPEF--LGKWNL 133
+LA+N DRF+S + +R + L + + LA K + V EF +
Sbjct: 59 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY 112
Query: 134 DKDLMLKMELQILRGLKWQMRAVTP-ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNIS 192
K +L+ME +L+ L + + A T L ++F+ + P +E + + D
Sbjct: 113 SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADP 172
Query: 193 FTRFRPSVIAASA 205
+ ++ PS+IA +A
Sbjct: 173 YLKYLPSLIAGAA 185
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 47 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 98
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 99 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 158
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 159 SLAMFLGELSLIDADPYLKYLPSVIAGAA 187
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 47 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 98
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 99 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 158
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 159 SLAMFLGELSLIDADPYLKYLPSVIAGAA 187
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 48 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 99
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 100 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 159
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 160 SLAMFLGELSLIDADPYLKYLPSVIAGAA 188
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 77 YLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRD-NSFSVPEF--LGKWNL 133
+LA+N DRF+S + +R + L + + LA K + V EF +
Sbjct: 59 HLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY 112
Query: 134 DKDLMLKMELQILRGLKWQMRAVTP-ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNIS 192
K +L+ME +L+ L + + A T L ++F+ + P +E + + D
Sbjct: 113 SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADP 172
Query: 193 FTRFRPSVIAASA 205
+ ++ PS+IA +A
Sbjct: 173 YLKYLPSLIAGAA 185
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 45 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 96
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 97 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 156
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 157 SLAMFLGELSLIDADPYLKYLPSVIAGAA 185
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 43 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 94
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 95 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 154
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 155 SLAMFLGELSLIDADPYLKYLPSVIAGAA 183
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 63 VQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF 122
V+ + KL +LA+N DRF+S + +R + L + + LA K +
Sbjct: 45 VEVGEEYKLQNETLHLAVNYIDRFLSS------MSVLRGKLQLVGTAAMLLASKFEE--I 96
Query: 123 SVPE-----FLGKWNLDKDLMLKMELQILRGLKWQMRAVT-PICLVRFFVEMIPIGKGIE 176
PE ++ K +L+ME +L+ L + + A T L ++F+ P +E
Sbjct: 97 YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVE 156
Query: 177 RRTLNEIIIQTQDNISFTRFRPSVIAASA 205
+ + D + ++ PSVIA +A
Sbjct: 157 SLAMFLGELSLIDADPYLKYLPSVIAGAA 185
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 78 LAMNIFDRFISRHQLPTVLDHVRDD-IVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKD 136
LAMN DRF+S L+ V+ + L +C+ +A KM++ ++P K + D
Sbjct: 66 LAMNYLDRFLS-------LEPVKKSRLQLLGATCMFVASKMKE---TIPLTAEKLCIYTD 115
Query: 137 LMLK------MELQILRGLKWQMRAVTPICLVRFFVEMIPIG---KGIERRTLNEIIIQT 187
++ MEL ++ LKW + A+TP + F+ +P K I R+ +
Sbjct: 116 NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALC 175
Query: 188 QDNISFTRFRPSV 200
++ F PS+
Sbjct: 176 ATDVKFISNPPSM 188
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 78 LAMNIFDRFISRHQLPTVLDHVRDD-IVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKD 136
LAMN DRF+S L+ V+ + L +C+ +A KM++ ++P K + D
Sbjct: 80 LAMNYLDRFLS-------LEPVKKSRLQLLGATCMFVASKMKE---TIPLTAEKLCIYTD 129
Query: 137 LMLK------MELQILRGLKWQMRAVTPICLVRFFVEMIPIG---KGIERRTLNEIIIQT 187
++ MEL ++ LKW + A+TP + F+ +P K I R+ +
Sbjct: 130 NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALC 189
Query: 188 QDNISFTRFRPSV 200
++ F PS+
Sbjct: 190 ATDVKFISNPPSM 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,497,721
Number of Sequences: 62578
Number of extensions: 398170
Number of successful extensions: 793
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 24
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)