Query 035817
Match_columns 365
No_of_seqs 251 out of 1563
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 7.5E-44 2.6E-48 344.5 24.6 227 5-251 30-269 (306)
2 2cch_B Cyclin A2, cyclin-A; co 100.0 9.7E-44 3.3E-48 335.9 22.9 220 9-251 3-230 (260)
3 1g3n_C V-cyclin; cyclin-depend 100.0 2.4E-43 8.2E-48 332.7 21.8 229 4-253 10-252 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 5E-43 1.7E-47 330.0 23.7 226 5-251 12-250 (254)
5 1f5q_B Gamma herpesvirus cycli 100.0 9.5E-43 3.2E-47 328.1 20.9 219 11-251 19-244 (252)
6 2b9r_A Human cyclin B1; cell c 100.0 3.5E-43 1.2E-47 333.8 16.9 218 10-250 4-226 (269)
7 2w96_A G1/S-specific cyclin-D1 100.0 1.2E-41 4.3E-46 323.3 23.1 221 12-252 23-260 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 4.5E-40 1.5E-44 314.7 23.0 211 10-250 15-243 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.3E-33 4.5E-38 265.5 15.8 195 36-251 35-253 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 8.1E-33 2.8E-37 264.7 20.1 181 53-251 47-244 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 7.1E-33 2.4E-37 260.7 18.8 194 36-251 25-242 (257)
12 1zp2_A RNA polymerase II holoe 100.0 1E-32 3.6E-37 256.6 16.1 178 64-252 37-223 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 1.4E-32 4.8E-37 270.9 9.9 193 38-252 34-250 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 8.6E-30 2.9E-34 247.8 20.1 179 64-250 66-262 (323)
15 1c9b_A General transcription f 99.9 2.4E-26 8.3E-31 209.4 22.1 176 64-249 14-189 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.9E-22 9.8E-27 181.4 19.9 175 64-248 18-194 (200)
17 3k7a_M Transcription initiatio 99.7 3.6E-19 1.2E-23 174.4 4.7 175 64-248 135-321 (345)
18 4bbr_M Transcription initiatio 99.5 6E-14 2.1E-18 137.3 7.0 176 64-249 135-322 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.0 2.5E-05 8.4E-10 74.1 10.3 102 64-170 83-186 (293)
20 1ais_B TFB TFIIB, protein (tra 96.6 0.0056 1.9E-07 54.2 8.1 85 64-154 114-198 (200)
21 1c9b_A General transcription f 95.9 0.061 2.1E-06 47.7 11.0 87 157-247 7-93 (207)
22 4bbr_M Transcription initiatio 93.8 0.34 1.2E-05 46.8 10.6 91 154-248 125-215 (345)
23 3h4c_A Transcription factor TF 92.1 2.2 7.7E-05 38.1 12.2 143 64-211 21-169 (260)
24 1zp2_A RNA polymerase II holoe 91.9 1.2 4.2E-05 40.0 10.9 86 158-247 31-125 (235)
25 3k7a_M Transcription initiatio 91.3 0.16 5.5E-06 49.0 4.5 90 155-248 126-215 (345)
26 2b9r_A Human cyclin B1; cell c 84.1 6.3 0.00022 36.1 10.3 86 159-247 42-129 (269)
27 2w96_A G1/S-specific cyclin-D1 83.9 7.6 0.00026 35.5 10.8 86 159-247 61-148 (271)
28 2f2c_A Cyclin homolog, V-cycli 81.5 8.5 0.00029 34.8 10.0 87 159-248 56-144 (254)
29 3rgf_B Cyclin-C; protein kinas 81.0 9.1 0.00031 35.4 10.2 55 159-214 47-101 (285)
30 2cch_B Cyclin A2, cyclin-A; co 80.6 6.3 0.00022 35.8 8.8 86 159-247 43-130 (260)
31 1g3n_C V-cyclin; cyclin-depend 80.6 7.4 0.00025 35.3 9.3 86 159-247 55-142 (257)
32 1jkw_A Cyclin H; cell cycle, c 80.1 13 0.00045 35.0 11.1 54 160-214 62-117 (323)
33 2ivx_A Cyclin-T2; transcriptio 78.7 5 0.00017 36.3 7.4 56 158-214 34-89 (257)
34 2i53_A Cyclin K; cell cycle, t 77.1 6 0.0002 35.7 7.4 55 159-214 45-99 (258)
35 3g33_B CCND3 protein; Ser/Thr 74.0 18 0.00062 33.8 10.1 86 159-247 75-162 (306)
36 1w98_B Cyclin E, G1/S-specific 73.8 18 0.0006 33.4 9.8 86 159-247 54-142 (283)
37 2pk2_A Cyclin-T1, protein TAT; 73.6 5.7 0.00019 38.3 6.6 56 158-214 41-96 (358)
38 1f5q_B Gamma herpesvirus cycli 61.8 54 0.0019 29.6 10.3 87 158-247 52-140 (252)
39 2pmi_B PHO85 cyclin PHO80, ami 50.4 1.1E+02 0.0037 28.6 10.4 89 156-247 75-166 (293)
40 3m03_A ORC6, origin recognitio 50.1 61 0.0021 25.2 7.2 82 64-147 8-89 (95)
41 4b6m_A Tubulin-specific chaper 47.0 6.7 0.00023 30.0 1.2 20 338-358 44-63 (84)
42 1whm_A Cylindromatosis tumor s 43.8 9.6 0.00033 29.6 1.7 21 338-358 51-71 (92)
43 2cp3_A CLIP-115, KIAA0291; mic 42.3 8.8 0.0003 29.3 1.2 19 339-358 45-63 (84)
44 3rdv_A CAP-Gly domain-containi 40.3 9.9 0.00034 28.1 1.2 19 339-358 40-58 (72)
45 1whh_A Clipr-59; microtubule b 37.7 12 0.00042 29.5 1.5 19 339-358 63-81 (102)
46 2e3h_A Restin; CAP-Gly, cytopl 37.2 12 0.0004 28.9 1.3 19 339-358 39-57 (90)
47 3m03_A ORC6, origin recognitio 30.6 1.2E+02 0.0041 23.5 6.1 51 195-248 42-92 (95)
48 1txq_A Dynactin 1; protein com 30.4 17 0.00059 28.1 1.2 19 339-358 51-69 (93)
49 2z0w_A CAP-Gly domain-containi 29.3 18 0.00063 28.2 1.2 17 339-355 48-64 (96)
50 2coy_A Dynactin-1; microtubule 28.3 19 0.00067 28.8 1.2 19 339-358 72-90 (112)
51 2cp6_A Restin; microtubule bin 26.1 22 0.00077 30.7 1.3 19 339-358 76-94 (172)
52 1ixd_A Cylindromatosis tumour- 25.5 25 0.00086 27.8 1.4 20 338-358 57-76 (104)
53 1whl_A Cylindromatosis tumor s 25.3 27 0.00092 27.0 1.5 19 339-358 56-74 (95)
54 3o0g_D Cyclin-dependent kinase 22.7 1.1E+02 0.0036 25.4 4.6 31 100-130 75-107 (149)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-44 Score=344.48 Aligned_cols=227 Identities=18% Similarity=0.276 Sum_probs=196.9
Q ss_pred CCCCCcccHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHH
Q 035817 5 HDYPLPAYKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAM 80 (365)
Q Consensus 5 ~~~p~~~y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV 80 (365)
..||--.|.+|||++|+++|.++.|.++|+ .++++.+|..+++||+ +|+.+|+++++|+++||
T Consensus 30 ~~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~-------------ev~~~~~l~~~t~~lAv 96 (306)
T 3g33_B 30 GPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWML-------------EVCEEQRCEEEVFPLAM 96 (306)
T ss_dssp -------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHH-------------HHHHHTTCCTTHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHH-------------HHHHHhCCcHhHHHHHH
Confidence 346655799999999999999999999998 3588899996666666 99999999999999999
Q ss_pred HHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCC
Q 035817 81 NIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVT 157 (365)
Q Consensus 81 ~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pT 157 (365)
+|||||+++..+. ++++||+|+||||||+|+||..+| +.++ ++++.|++++|++||+.||++|+|++++||
T Consensus 97 ~~lDRfls~~~v~------~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~t 170 (306)
T 3g33_B 97 NYLDRYLSCVPTR------KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVI 170 (306)
T ss_dssp HHHHHHHHHCCCC------GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCC
Confidence 9999999999887 479999999999999999999775 7787 477899999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCC--cchhhHHHHHhhcCC
Q 035817 158 PICLVRFFVEMIPIGK----GIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDD--IYEENKKILLSRKYV 231 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~----~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~--~~~~w~~~L~~~~~~ 231 (365)
|++||.+|++.++... .+.+. |+++++.++.++.|++|+||+||||||++|+..++.. +...|.+.|..++||
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~-a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~ 249 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKH-AQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGT 249 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHH-HHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHH-HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCC
Confidence 9999999999987652 24455 8999999999999999999999999999999988743 224678899999999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 035817 232 EEEDLETCLDETYEKCIEKK 251 (365)
Q Consensus 232 ~~~~l~~c~~~l~~l~~~~~ 251 (365)
+.++|.+|++.|.+++.+..
T Consensus 250 ~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 250 EVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 2
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=9.7e-44 Score=335.88 Aligned_cols=220 Identities=20% Similarity=0.258 Sum_probs=201.2
Q ss_pred CcccHHHHHHHHHHHHhhhcCCCCCC---CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHH
Q 035817 9 LPAYKEEQFEKYFNVETEWMADEGYA---ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDR 85 (365)
Q Consensus 9 ~~~y~~ei~~~l~~~E~~~~p~~~y~---~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDR 85 (365)
..+|.+|||.+|++.|.++.|.++|+ +++++.+|..+++||. +|+.+|+++++|+++||+|+||
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~-------------~v~~~~~l~~~tl~lAv~~lDR 69 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLV-------------EVGEEYKLQNETLHLAVNYIDR 69 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999 5688999996666666 9999999999999999999999
Q ss_pred HHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCChHHHH
Q 035817 86 FISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLV 162 (365)
Q Consensus 86 fls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL 162 (365)
|+++..+. +.++|++|+||||||||+||..+| +.|+ ++++.|++++|++||+.||++|+|++++|||++|+
T Consensus 70 fls~~~v~------~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl 143 (260)
T 2cch_B 70 FLSSMSVL------RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFL 143 (260)
T ss_dssp HHHHCCCC------HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred HhccCCCC------HHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHH
Confidence 99999887 468999999999999999999664 8888 46788999999999999999999999999999999
Q ss_pred HHHHHHCCCCh-hHHHHHHHHHHHHHccchh-ccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHHHH
Q 035817 163 RFFVEMIPIGK-GIERRTLNEIIIQTQDNIS-FTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCL 240 (365)
Q Consensus 163 ~~fl~~l~~~~-~l~~~~a~~li~~~l~d~~-~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~c~ 240 (365)
.+|++.++.+. .+... |+++++.++.++. +++|+||.||||||++|+..++. +.|.+.+..++|+++++|.+|+
T Consensus 144 ~~~~~~l~~~~~~~~~~-a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~ 219 (260)
T 2cch_B 144 TQYFLHQQPANCKVESL-AMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCL 219 (260)
T ss_dssp HHHHTTCSSCCHHHHHH-HHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHH-HHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHH
Confidence 99999998664 77788 9999999999999 99999999999999999998864 4588899999999999999999
Q ss_pred HHHHHHHHhcc
Q 035817 241 DETYEKCIEKK 251 (365)
Q Consensus 241 ~~l~~l~~~~~ 251 (365)
+.|.+++.+..
T Consensus 220 ~~l~~~~~~~~ 230 (260)
T 2cch_B 220 MDLHQTYLKAP 230 (260)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHhcC
Confidence 99999987654
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.4e-43 Score=332.67 Aligned_cols=229 Identities=14% Similarity=0.180 Sum_probs=196.9
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHH
Q 035817 4 HHDYPLPAYKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLA 79 (365)
Q Consensus 4 ~~~~p~~~y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lA 79 (365)
+.+||.-...+||| +|+++|.++.|.++|+ .++++.+|..+++||+ +|+.+|+++++|+++|
T Consensus 10 ~~~dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~-------------ev~~~~~l~~etl~lA 75 (257)
T 1g3n_C 10 GLLDPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMF-------------SVCQEYNLEPNVVALA 75 (257)
T ss_dssp ------CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHH
T ss_pred CCCCCccccHHHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHH-------------HHHHHhCCCccHHHHH
Confidence 34566544459999 9999999999999997 5688999996666655 9999999999999999
Q ss_pred HHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccC
Q 035817 80 MNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAV 156 (365)
Q Consensus 80 V~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~p 156 (365)
|+|+|||+++..+. +.++|++|+||||||||+||..+| +.++ ++++.|++++|++||+.||++|+|++++|
T Consensus 76 v~~~DRfls~~~v~------~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~ 149 (257)
T 1g3n_C 76 LNLLDRLLLIKQVS------KEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAV 149 (257)
T ss_dssp HHHHHHHTTTCCCC------HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHccCCCC------HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCC
Confidence 99999999998887 478999999999999999999765 7888 47789999999999999999999999999
Q ss_pred ChHHHHHHHHHHCCCChh----HHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCC---cchhhHHHHHhhc
Q 035817 157 TPICLVRFFVEMIPIGKG----IERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDD---IYEENKKILLSRK 229 (365)
Q Consensus 157 Tp~~FL~~fl~~l~~~~~----l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~---~~~~w~~~L~~~~ 229 (365)
||++|+.+|++.++.+.+ +... |+++++.++.++.|++|+||.||||||++|+..++.. ..+.|.+.+..++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~-a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t 228 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHE-VNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL 228 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHH-HHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHH-HHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH
Confidence 999999999999876532 3456 8999999999999999999999999999999888632 1256999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccc
Q 035817 230 YVEEEDLETCLDETYEKCIEKKIL 253 (365)
Q Consensus 230 ~~~~~~l~~c~~~l~~l~~~~~~~ 253 (365)
||++++|.+|++.|.+++.+...+
T Consensus 229 ~~~~~~l~~c~~~i~~l~~~~~~~ 252 (257)
T 1g3n_C 229 GCDVSVLQAAVEQILTSVSDFDLR 252 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred CcCHHHHHHHHHHHHHHHHHCCHH
Confidence 999999999999999999775543
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=5e-43 Score=329.96 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=194.2
Q ss_pred CCCCCcccHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHH
Q 035817 5 HDYPLPAYKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAM 80 (365)
Q Consensus 5 ~~~p~~~y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV 80 (365)
.+||.-...+|||+ |+++|.++.|.++|+ +++++.+|..+++||+ +|+.+|+++++|+++||
T Consensus 12 ~~dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~-------------~v~~~~~l~~etl~lAv 77 (254)
T 2f2c_A 12 KIDSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMH-------------LLCESFELDKSVFPLSV 77 (254)
T ss_dssp CCCHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHH-------------HHHHHTTCCTTHHHHHH
T ss_pred CCCcccccHHHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHH-------------HHHHHHCCCchHHHHHH
Confidence 44554333489999 999999999999997 3588999996655555 99999999999999999
Q ss_pred HHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCC
Q 035817 81 NIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVT 157 (365)
Q Consensus 81 ~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pT 157 (365)
+|+|||+++..+. +.++|++|+||||||||+||..+| +.++ ++++.|++++|++||+.||++|+|+++.||
T Consensus 78 ~~~DRfls~~~v~------~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~t 151 (254)
T 2f2c_A 78 SILDRYLCKKQGT------KKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVL 151 (254)
T ss_dssp HHHHHHTTTSCCC------TTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHccCCcC------HHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCC
Confidence 9999999998887 368999999999999999998765 7888 467899999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCChh----HHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCc--chhhHHHHHhhcCC
Q 035817 158 PICLVRFFVEMIPIGKG----IERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDI--YEENKKILLSRKYV 231 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~~----l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~--~~~w~~~L~~~~~~ 231 (365)
|++|+.+|++.++.+.+ +... |+++++.++.++.|++|+||.||||||++|+..++... |..|.+.+..++||
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~-a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEA-ASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHH-HHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHH-HHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 99999999999987633 3455 89999999999999999999999999999998863321 33348999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 035817 232 EEEDLETCLDETYEKCIEKK 251 (365)
Q Consensus 232 ~~~~l~~c~~~l~~l~~~~~ 251 (365)
++++|.+|++.|.+++.+..
T Consensus 231 ~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp CHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999986544
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.5e-43 Score=328.11 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=186.4
Q ss_pred ccHHHHHHHHHHHHhhhcCCCCCCCCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHHhcC
Q 035817 11 AYKEEQFEKYFNVETEWMADEGYAESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRH 90 (365)
Q Consensus 11 ~y~~ei~~~l~~~E~~~~p~~~y~~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfls~~ 90 (365)
...++||.+|+++|.++.|. ..-+++++.+|..+|+||+ +|+.+|+++++|+++||+|+|||+++.
T Consensus 19 l~~d~i~~~l~~~E~~~~p~-~~q~~i~~~~R~~lvdWl~-------------ev~~~~~l~~eT~~lAv~~lDRfLs~~ 84 (252)
T 1f5q_B 19 DCRQMIYRSEREHDARMVGV-NVDQHFTSQYRKVLTTWMF-------------CVCKDLRQDNNVFPLAVALLDELFLST 84 (252)
T ss_dssp HHHHHHHHHHHHHHHHHSSS-SHHHHHHCSHHHHHHHHHH-------------HHHHHTTCCTTHHHHHHHHHHHHHHHS
T ss_pred HhHHHHHHHHHHHHHHhCcC-ccCCCCCHHHHHHHHHHHH-------------HHHHHcCCChHHHHHHHHHHHHHhcCC
Confidence 45679999999999999882 1115678889996655555 999999999999999999999999999
Q ss_pred CCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCChHHHHHHHHH
Q 035817 91 QLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVE 167 (365)
Q Consensus 91 ~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~ 167 (365)
.+. ++++||+|+|||+||||+||+.+| +.++ ++++.|++++|++||+.||++|+|+++.|||++|+++|++
T Consensus 85 ~v~------~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~ 158 (252)
T 1f5q_B 85 RID------RENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILH 158 (252)
T ss_dssp CCC------GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred CcC------HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHH
Confidence 887 479999999999999999999775 7777 5789999999999999999999999999999999999999
Q ss_pred HCCCCh----hHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHHHHHHH
Q 035817 168 MIPIGK----GIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDET 243 (365)
Q Consensus 168 ~l~~~~----~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l 243 (365)
.++.+. .+... |.++++.++.++.|++|+||+|||||+.++.... ..+...|.+.+..++||+.++|.+|+++|
T Consensus 159 ~~~~~~~~~~~~~~~-a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~-~~~~~~~~~~L~~~t~~~~~~l~~C~~~i 236 (252)
T 1f5q_B 159 IMHAPREDYLNIYNL-CRPKIFCALCDGRSAMKRPVLITLACMHLTMNQK-YDYYENRIDGVCKSLYITKEELHQCCDLV 236 (252)
T ss_dssp HTTCCHHHHHHHHHH-HHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCCcchHHHHHHH-HHHHHHHHHhchhhhccCHHHHHHHHHHHHhccC-CCchhhHHHHHHHHHCcCHHHHHHHHHHH
Confidence 987662 34556 8999999999999999999999999965554211 11123357788899999999999999999
Q ss_pred HHHHHhcc
Q 035817 244 YEKCIEKK 251 (365)
Q Consensus 244 ~~l~~~~~ 251 (365)
.+++....
T Consensus 237 ~~~l~~~~ 244 (252)
T 1f5q_B 237 DIAIVSFD 244 (252)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhC
Confidence 99986654
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.5e-43 Score=333.80 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=198.7
Q ss_pred cccHHHHHHHHHHHHhhhcCCCCCC--CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHH
Q 035817 10 PAYKEEQFEKYFNVETEWMADEGYA--ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFI 87 (365)
Q Consensus 10 ~~y~~ei~~~l~~~E~~~~p~~~y~--~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfl 87 (365)
.+|.+|||++|++.|.++.|.++|+ +++++.+|..+++||. +|+.+|+++++|+++||+|+|||+
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~-------------~v~~~~~l~~~tl~lAv~~lDRfl 70 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLV-------------QVQMKFRLLQETMYMTVSIIDRFM 70 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999 5689999996666666 999999999999999999999999
Q ss_pred hcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCChHHHHHH
Q 035817 88 SRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRF 164 (365)
Q Consensus 88 s~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~ 164 (365)
++..+. +.++|++|+||||||||+||..+| +.|+ ++++.|++++|++||+.||++|+|++++|||++|+.+
T Consensus 71 ~~~~v~------~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 71 QNNSVP------KKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp TTSCCC------GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred cCCCCc------HHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 999887 478999999999999999999765 8888 4678899999999999999999999999999999999
Q ss_pred HHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHHHHHHHH
Q 035817 165 FVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETY 244 (365)
Q Consensus 165 fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~ 244 (365)
|++.++.+..+... |+++++.++.++.|++|+||.||||||++|+..++.. .|.+.+..++||++++|.+|++.|.
T Consensus 145 ~~~~~~~~~~~~~~-a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~ 220 (269)
T 2b9r_A 145 ASKIGEVDVEQHTL-AKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLA 220 (269)
T ss_dssp HHHSSCCCHHHHHH-HHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHH
T ss_pred HHHhcCCCHHHHHH-HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998887778888 9999999999999999999999999999999998754 4888899999999999999999999
Q ss_pred HHHHhc
Q 035817 245 EKCIEK 250 (365)
Q Consensus 245 ~l~~~~ 250 (365)
+++...
T Consensus 221 ~~~~~~ 226 (269)
T 2b9r_A 221 KNVVMV 226 (269)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988654
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.2e-41 Score=323.27 Aligned_cols=221 Identities=20% Similarity=0.325 Sum_probs=194.1
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCC----CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHH
Q 035817 12 YKEEQFEKYFNVETEWMADEGYA----ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFI 87 (365)
Q Consensus 12 y~~ei~~~l~~~E~~~~p~~~y~----~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfl 87 (365)
..+|||++|+++|.++.|.++|+ +++++.+|..+++||. +|+.+|+++++|+++||+|+|||+
T Consensus 23 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~-------------~v~~~~~l~~~tl~lAv~~lDRfl 89 (271)
T 2w96_A 23 LNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWML-------------EVCEEQKCEEEVFPLAMNYLDRFL 89 (271)
T ss_dssp --CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHH-------------HHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHH-------------HHHHHHCCchhHHHHHHHHHHHhC
Confidence 37899999999999999999987 4688999996666666 999999999999999999999999
Q ss_pred hcCCCCCccCCcccchhhhHHHHHHHHhhhccCCC-Chhhh--hhccccCHHHHHHHHHHHHHhcCCccccCChHHHHHH
Q 035817 88 SRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSF-SVPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRF 164 (365)
Q Consensus 88 s~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~-pl~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~ 164 (365)
++..+. +.++|++|+||||||||+||+.+ .+.++ ++++.|++++|++||+.||++|+|++++|||++|+.+
T Consensus 90 s~~~v~------~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 90 SLEPVK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp TTSCCC------TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred CcCCcC------HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 999887 36899999999999999999955 47887 4678999999999999999999999999999999999
Q ss_pred HHHHCCCChh----HHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCC------CcchhhHHHHHhhcCCCHH
Q 035817 165 FVEMIPIGKG----IERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYD------DIYEENKKILLSRKYVEEE 234 (365)
Q Consensus 165 fl~~l~~~~~----l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~------~~~~~w~~~L~~~~~~~~~ 234 (365)
|++.++.+.+ +.+. |+++++.++.++.|++|+||.||||||++|+..++. .+...|.+.+..++||+++
T Consensus 164 ~~~~l~~~~~~~~~~~~~-a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~ 242 (271)
T 2w96_A 164 FLSKMPEAEENKQIIRKH-AQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPD 242 (271)
T ss_dssp HHHTSCCCHHHHHHHHHH-HHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHH
T ss_pred HHHHcCCCchHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHH
Confidence 9999987633 2345 899999999999999999999999999999987752 1234578899999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 035817 235 DLETCLDETYEKCIEKKI 252 (365)
Q Consensus 235 ~l~~c~~~l~~l~~~~~~ 252 (365)
+|++|++.|.+++.....
T Consensus 243 ~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 243 CLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999976543
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.5e-40 Score=314.68 Aligned_cols=211 Identities=19% Similarity=0.302 Sum_probs=186.5
Q ss_pred cccHHHHHHHHHHHHhhhcCCCCCC---CCcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHH
Q 035817 10 PAYKEEQFEKYFNVETEWMADEGYA---ESKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRF 86 (365)
Q Consensus 10 ~~y~~ei~~~l~~~E~~~~p~~~y~---~~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRf 86 (365)
.+|.+|||++|+++|.++.|.++|+ +++++.+|..+++||. +|+.+|++.++|+++||+|+|||
T Consensus 15 ~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~-------------~v~~~~~l~~~tl~lAv~~lDRf 81 (283)
T 1w98_B 15 WANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLM-------------EVCEVYKLHRETFYLAQDFFDRY 81 (283)
T ss_dssp SSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHH-------------HHHHHTTCBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHH-------------HHHHHhCCCccHHHHHHHHHHHH
Confidence 3899999999999999999999999 4688999996666666 99999999999999999999999
Q ss_pred Hhc-CCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhh--hhccccCHHHHHHHHHHHHHhcCCccccCChHHHH
Q 035817 87 ISR-HQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEF--LGKWNLDKDLMLKMELQILRGLKWQMRAVTPICLV 162 (365)
Q Consensus 87 ls~-~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl--~~~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL 162 (365)
+++ ..+. ++++|++|+|||+||||+||..+| +.++ ++++.|++++|++||+.||++|+|++++|||++|+
T Consensus 82 ls~~~~v~------~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL 155 (283)
T 1w98_B 82 MATQENVV------KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWL 155 (283)
T ss_dssp HHHCCCCC------GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred HHhCCCCC------HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHH
Confidence 998 4565 479999999999999999999765 7888 46789999999999999999999999999999999
Q ss_pred HHHHHHCCCCh-----------hHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCC
Q 035817 163 RFFVEMIPIGK-----------GIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYV 231 (365)
Q Consensus 163 ~~fl~~l~~~~-----------~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~ 231 (365)
.+|++.++.+. ..... +.++++.++.++.|++|+||.||||||++|+ |.+.+..++||
T Consensus 156 ~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~ 224 (283)
T 1w98_B 156 NVYMQVAYLNDLHEVLLPQYPQQIFIQ-IAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGY 224 (283)
T ss_dssp HHHHHHHTCCSSCCSSSCCSCHHHHHH-HHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCC
T ss_pred HHHHHHhccCchhhHHHHhhhHHHHHH-HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCC
Confidence 99999875431 12233 6778999999999999999999999999985 46778899999
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 035817 232 EEEDLETCLDETYEKCIEK 250 (365)
Q Consensus 232 ~~~~l~~c~~~l~~l~~~~ 250 (365)
++++|.+|++.|..++...
T Consensus 225 ~~~~i~~c~~~l~~~~~~~ 243 (283)
T 1w98_B 225 QWCDIENCVKWMVPFAMVI 243 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-33 Score=265.54 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=165.0
Q ss_pred CcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHh
Q 035817 36 SKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAW 115 (365)
Q Consensus 36 ~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAs 115 (365)
+.+..+|..+++||. +++.+|+++++|+++|++|||||+++..+. +.++|++|+|||||||
T Consensus 35 ~~e~~~R~~~~~~i~-------------~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~------~~~~qlv~~acL~lA~ 95 (258)
T 2i53_A 35 ATEARYRREGARFIF-------------DVGTRLGLHYDTLATGIIYFHRFYMFHSFK------QFPRYVTGACCLFLAG 95 (258)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHcCCChHHHHHHHHHHHHHHHhCChh------hcCHHHHHHHHHHHHH
Confidence 455667776666665 999999999999999999999999999887 3689999999999999
Q ss_pred hhccCCCChhhhhh-------cccc------CHHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHCCCCh----hHHHH
Q 035817 116 KMRDNSFSVPEFLG-------KWNL------DKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGK----GIERR 178 (365)
Q Consensus 116 K~eE~~~pl~dl~~-------~~~~------t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~----~l~~~ 178 (365)
|+||..+++.+++. ++.| ++++|++||+.||++|+|+++++||++|+.+|++.++.+. .+.+.
T Consensus 96 K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~ 175 (258)
T 2i53_A 96 KVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQM 175 (258)
T ss_dssp HHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99998777888752 2334 4899999999999999999999999999999999998774 57777
Q ss_pred HHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHH-----HHh--hcCCCHHHHHHHHHHHHHHHHhcc
Q 035817 179 TLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKI-----LLS--RKYVEEEDLETCLDETYEKCIEKK 251 (365)
Q Consensus 179 ~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~-----L~~--~~~~~~~~l~~c~~~l~~l~~~~~ 251 (365)
|+++++.++.+..+++|+||.||+|||++|...++.. .+.|... +.. ++|++.++|.+|++.|.+++...+
T Consensus 176 -A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~ 253 (258)
T 2i53_A 176 -AWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253 (258)
T ss_dssp -HHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSC
T ss_pred -HHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999988742 2233211 112 359999999999999999986654
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-33 Score=264.68 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=161.2
Q ss_pred hhhhhccCcccccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCC-hhhhhh--
Q 035817 53 AFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFS-VPEFLG-- 129 (365)
Q Consensus 53 idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~p-l~dl~~-- 129 (365)
++|+. +|+.+++++++|+++|++|||||+++..+. +.++|++|+||||||||+||+.+| +.+++.
T Consensus 47 ~~~I~------~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~------~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 47 TNVIQ------ALGEHLKLRQQVIATATVYFKRFYARYSLK------SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHH------HHHHHTTCCHHHHHHHHHHHHHHHHHSCTT------TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHH------HHHHHhCCCHHHHHHHHHHHHHHHHhCCch------hcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 55555 999999999999999999999999999988 368999999999999999999886 667632
Q ss_pred --------------ccccCHHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccC
Q 035817 130 --------------KWNLDKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTR 195 (365)
Q Consensus 130 --------------~~~~t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~ 195 (365)
++.+++++|++||+.||++|+|+++++||++||..|++.++.+..+.+. |+++++.++.+..+++
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~-A~~~l~~sl~t~~~l~ 193 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL-AWRIVNDTYRTDLCLL 193 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHH-HHHHHHHHTTSSHHHH
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHccChhhc
Confidence 2457999999999999999999999999999999999999988888888 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc
Q 035817 196 FRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKK 251 (365)
Q Consensus 196 ~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~~~~ 251 (365)
|+||.||+|||++|...++... ..| ...+|++.++|.+|++.|.+++....
T Consensus 194 ~~Ps~IAaAaiylA~~~~~~~~-~~W----~~~~~~~~~~l~~~~~~il~ly~~~~ 244 (285)
T 3rgf_B 194 YPPFMIALACLHVACVVQQKDA-RQW----FAELSVDMEKILEIIRVILKLYEQWK 244 (285)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCC-HHH----HHTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcCCCh-hhH----HHHHCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887432 334 34579999999999999999997643
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=7.1e-33 Score=260.68 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=164.0
Q ss_pred CcChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHh
Q 035817 36 SKEVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAW 115 (365)
Q Consensus 36 ~i~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAs 115 (365)
+....+|..+++||. +++.+|+++++|+++|++|||||+++..+. +.++|++|+|||||||
T Consensus 25 ~~e~~~R~~~~~~i~-------------~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~------~~~~qlv~~acL~lA~ 85 (257)
T 2ivx_A 25 DKELSCRQQAANLIQ-------------EMGQRLNVSQLTINTAIVYMHRFYMHHSFT------KFNKNIISSTALFLAA 85 (257)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHcCCcHHHHHHHHHHHHHHHhhCChh------hhCHHHHHHHHHHHHh
Confidence 344567776655555 999999999999999999999999999887 3689999999999999
Q ss_pred hhccCCCChhhhhh----------------ccccC--HHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHCCCChhHHH
Q 035817 116 KMRDNSFSVPEFLG----------------KWNLD--KDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIER 177 (365)
Q Consensus 116 K~eE~~~pl~dl~~----------------~~~~t--~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~~l~~ 177 (365)
|+||..+++.|++. +..|+ +++|++||+.||++|+|+++++||+.|+..|++.++.+.++.+
T Consensus 86 K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~ 165 (257)
T 2ivx_A 86 KVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQ 165 (257)
T ss_dssp HHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHH
Confidence 99999666888741 23344 9999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHcc-chhccCCCHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhcc
Q 035817 178 RTLNEIIIQTQD-NISFTRFRPSVIAASAVLTACRLLYDDI-----YEENKKILLSRKYVEEEDLETCLDETYEKCIEKK 251 (365)
Q Consensus 178 ~~a~~li~~~l~-d~~~l~~~PS~IAaAai~lA~~~l~~~~-----~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~~~~ 251 (365)
. |+++++.++. +..+++|+||.||+|||++|...++... ...|.+.+ ..+|+.++|++|++.|.+++....
T Consensus 166 ~-A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~ 242 (257)
T 2ivx_A 166 T-SYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTP 242 (257)
T ss_dssp H-HHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSH
T ss_pred H-HHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhCh
Confidence 8 9999999984 5668999999999999999999887321 12344322 348999999999999999997654
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=256.57 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=158.1
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcc-cchhhhHHHHHHHHhhhccCCCChhhhhh--c------cccC
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVR-DDIVLAANSCLTLAWKMRDNSFSVPEFLG--K------WNLD 134 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~-~~lqLiavaCL~LAsK~eE~~~pl~dl~~--~------~~~t 134 (365)
+++..++++++|+++|++|||||+++..+. + .++|++|+||||||||+||.++++.|++. + +.++
T Consensus 37 ~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~------~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~ 110 (235)
T 1zp2_A 37 TFGDRLRLRQRVLATAIVLLRRYMLKKNEE------KGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLS 110 (235)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCSC------CCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcccc------cccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhcc
Confidence 999999999999999999999999999888 3 58999999999999999998888988853 2 3689
Q ss_pred HHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 135 KDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 135 ~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
+++|++||+.||++|+|++.++||+.|+..|++.++.+.++.+. |+++++.++.+..+++|+||.||+|||++|...++
T Consensus 111 ~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~-A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~ 189 (235)
T 1zp2_A 111 RSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEF-AWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDE 189 (235)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHH-HHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998877788888 99999999999999999999999999999998665
Q ss_pred CCcchhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhccc
Q 035817 215 DDIYEENKKILLSRKYVEEEDLETCLDETYEKCIEKKI 252 (365)
Q Consensus 215 ~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~~~~~ 252 (365)
. ..+.|...+ .|++.++|.+|++.|.+++...+.
T Consensus 190 ~-~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~~~ 223 (235)
T 1zp2_A 190 N-TIPKLLDLI---KSTDAFKVILCVQRIISIYYFEDI 223 (235)
T ss_dssp T-HHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred C-CCCCCcchh---hcCCHHHHHHHHHHHHHHHhhCCc
Confidence 3 223343322 399999999999999999976653
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=1.4e-32 Score=270.87 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=161.9
Q ss_pred ChhhhHHHHHHHHHhhhhhhccCcccccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhh
Q 035817 38 EVTLRKVAMHVILRSAFWVLLDSFPVQNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKM 117 (365)
Q Consensus 38 ~~~~R~~~v~wIlr~idWl~~~~~~~~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~ 117 (365)
...+|..+++||. +|+.+|+|+++|+++|++|||||+++..+. +.++|+||+||||||||+
T Consensus 34 E~~~R~~~v~wI~-------------ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~------~~~~qlva~acLfLA~K~ 94 (358)
T 2pk2_A 34 ELSYRQQAANLLQ-------------DMGQRLNVSQLTINTAIVYMHRFYMIQSFT------RFPGNSVAPAALFLAAKV 94 (358)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHHHHHHHhcCCcc------cccHHHHHHHHHHHHHhh
Confidence 3456665555555 999999999999999999999999999887 368999999999999999
Q ss_pred ccCCCChhhhhh----------------cccc--CHHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHCCCChhHHHHH
Q 035817 118 RDNSFSVPEFLG----------------KWNL--DKDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRT 179 (365)
Q Consensus 118 eE~~~pl~dl~~----------------~~~~--t~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~~l~~~~ 179 (365)
||+.+++.|++. +..| .+++|++||+.||++|+|++.++||+.||..|++.++.+.++.+.
T Consensus 95 EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~- 173 (358)
T 2pk2_A 95 EEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQT- 173 (358)
T ss_dssp TTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHH-
T ss_pred ccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHH-
Confidence 999777888742 2234 489999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHcc-chhccCCCHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhccc
Q 035817 180 LNEIIIQTQD-NISFTRFRPSVIAASAVLTACRLLYDDI-----YEENKKILLSRKYVEEEDLETCLDETYEKCIEKKI 252 (365)
Q Consensus 180 a~~li~~~l~-d~~~l~~~PS~IAaAai~lA~~~l~~~~-----~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~~~~~ 252 (365)
|+++++.++. +..++.|+||.||||||++|...++... ...|...+ ..+|+.++|++|++.|.+++.....
T Consensus 174 A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~ 250 (358)
T 2pk2_A 174 SYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN 250 (358)
T ss_dssp HHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc
Confidence 9999999985 5558999999999999999999886320 12243322 2479999999999999999866543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=8.6e-30 Score=247.80 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=158.2
Q ss_pred ccccccC--CCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhc-------cccC
Q 035817 64 QNSKSDK--LDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGK-------WNLD 134 (365)
Q Consensus 64 ~v~~~~~--l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~-------~~~t 134 (365)
++|..|+ ++++|+++|++|||||++..++. +.++|+||+||||||||+||.++++.+++.. ..|+
T Consensus 66 ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~------~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 66 EFCSVFKPAMPRSVVGTACMYFKRFYLNNSVM------EYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhhhCChh------hcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHH
Confidence 9999999 99999999999999999999887 3689999999999999999998889888532 1467
Q ss_pred HHHHHHHHHHHHHhcCCccccCChHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHH
Q 035817 135 KDLMLKMELQILRGLKWQMRAVTPICLVRFFVEMI-------PIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVL 207 (365)
Q Consensus 135 ~~~Il~mE~~IL~~L~w~L~~pTp~~FL~~fl~~l-------~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~ 207 (365)
+++|++||+.||++|+|++.++||+.||..|+..+ +....+.+. |+++++.++.+..++.|+||.||+|||+
T Consensus 140 ~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~-A~~~l~~sl~t~~~l~~~Ps~IAaAai~ 218 (323)
T 1jkw_A 140 LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKT-ADDFLNRIALTDAYLLYTPSQIALTAIL 218 (323)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHH-HHHHHHHHTTSTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHhccHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999999999998765 222457777 9999999999999999999999999999
Q ss_pred HHHHHhCCCcchhhHHHHHhh--cCCCHHHHHHHHHHHHHHHHhc
Q 035817 208 TACRLLYDDIYEENKKILLSR--KYVEEEDLETCLDETYEKCIEK 250 (365)
Q Consensus 208 lA~~~l~~~~~~~w~~~L~~~--~~~~~~~l~~c~~~l~~l~~~~ 250 (365)
+|...++. ..+.|...+..+ ++++.++|.+|++.|.+++...
T Consensus 219 lA~~~~~~-~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 219 SSASRAGI-TMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp HHHHHHSC-CCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCC-ChHHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 99998874 345688777554 7889999999999999998764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=2.4e-26 Score=209.45 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=162.4
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
+++..+++++.|+.+|+.|++||+....+. +.+.+++|+||||||||+||.+.++.|+.....+++++|.++|+
T Consensus 14 ~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~------~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~~~ 87 (207)
T 1c9b_A 14 TMADRINLPRNIVDRTNNLFKQVYEQKSLK------GRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFK 87 (207)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTCST------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCcC------CCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999998887 36799999999999999999987899997666699999999999
Q ss_pred HHHHhcCCccccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHH
Q 035817 144 QILRGLKWQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKK 223 (365)
Q Consensus 144 ~IL~~L~w~L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~ 223 (365)
.||++|+|++.+++|+.|+.+|.+.++.+.++.+. |+++++.++.+..+++++|+.||+||||+|....+. +.|.+
T Consensus 88 ~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~-A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~---~~~~~ 163 (207)
T 1c9b_A 88 LILKALETSVDLITTGDFMSRFCSNLCLPKQVQMA-ATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE---KRTQK 163 (207)
T ss_dssp HHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS---CCCHH
T ss_pred HHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC---CCCHH
Confidence 99999999999999999999999999988888888 999999999988899999999999999999987753 34778
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHh
Q 035817 224 ILLSRKYVEEEDLETCLDETYEKCIE 249 (365)
Q Consensus 224 ~L~~~~~~~~~~l~~c~~~l~~l~~~ 249 (365)
.+..++|+++.+|..|++.|.+....
T Consensus 164 ~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 164 EIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999986644
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.89 E-value=2.9e-22 Score=181.38 Aligned_cols=175 Identities=17% Similarity=0.161 Sum_probs=161.7
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
+++..+++++.+...|..|++||+....+. +...+.+|++|+++|||.++.+.++.|+.....++..+|.++++
T Consensus 18 ~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~------gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~ 91 (200)
T 1ais_B 18 RITAQLKLPRHVEEEAARLYREAVRKGLIR------GRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR 91 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTTTTT------TCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCcC------CCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999987765 25789999999999999999887899997666799999999999
Q ss_pred HHHHhcCCcccc--CChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhh
Q 035817 144 QILRGLKWQMRA--VTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEEN 221 (365)
Q Consensus 144 ~IL~~L~w~L~~--pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w 221 (365)
.|++.|+|++.. ++|..|+.+|...++.+.++.+. |+++++.+..+..+.+++|+.|||||||+|....+.. .|
T Consensus 92 ~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~-A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~---~t 167 (200)
T 1ais_B 92 FIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRR-AIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEK---RT 167 (200)
T ss_dssp HHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHH-HHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCC---CC
Confidence 999999999999 99999999999999998888888 9999999999999999999999999999999887643 47
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 035817 222 KKILLSRKYVEEEDLETCLDETYEKCI 248 (365)
Q Consensus 222 ~~~L~~~~~~~~~~l~~c~~~l~~l~~ 248 (365)
.+.+..++|+++.+|..|++.|.+.+.
T Consensus 168 ~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 168 QREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 889999999999999999999998763
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.6e-19 Score=174.42 Aligned_cols=175 Identities=9% Similarity=0.032 Sum_probs=74.8
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
.++..++++..+.-.|..|+.|++....+. ....+.++++|||||||.++++.++.|+..-..+++++|.++++
T Consensus 135 ~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~k------gr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~~ 208 (345)
T 3k7a_M 135 MLCDAAELPKIVKDCAKEAYKLCHDEKTLK------GKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHTTCCHHHHTHHHHHHHHHSSSCSSC------CCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCccc------CCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 899999999999999999999999988776 25789999999999999999987899997666799999999999
Q ss_pred HHHHhcC------------CccccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHH
Q 035817 144 QILRGLK------------WQMRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACR 211 (365)
Q Consensus 144 ~IL~~L~------------w~L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~ 211 (365)
.|++.|+ +++.+++|..|+.+|+..++.+.++.+. |+++++.+..+..+.+++|+.|||||||+|..
T Consensus 209 ~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~-A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~ 287 (345)
T 3k7a_M 209 IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTS-AEYTAKKCKEIKEIAGKSPITIAVVSIYLNIL 287 (345)
T ss_dssp HHHHHHTCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHhchhcCCCHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999988888888 99999999999889999999999999999998
Q ss_pred HhCCCcchhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 035817 212 LLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCI 248 (365)
Q Consensus 212 ~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~ 248 (365)
.++. ..|++.+...+|+++..|+.+++.|.+...
T Consensus 288 ~~~~---~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 288 LFQI---PITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -------------------------------------
T ss_pred HHCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7753 247788999999999999999999998763
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.45 E-value=6e-14 Score=137.27 Aligned_cols=176 Identities=9% Similarity=0.038 Sum_probs=72.4
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
+++..++|+..+.-.|..++.+++....+. ......++++|+|+|+|.++.+.++.|+..-...++.+|.+..+
T Consensus 135 ~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~r------Grs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~k 208 (345)
T 4bbr_M 135 MLCDAAELPKIVKDCAKEAYKLCHDEKTLK------GKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCTTTT------TCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCcc------CCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999999999999877665 24688999999999999999988899986666688999999999
Q ss_pred HHHHhcCCc------------cccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHH
Q 035817 144 QILRGLKWQ------------MRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACR 211 (365)
Q Consensus 144 ~IL~~L~w~------------L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~ 211 (365)
.|.+.|+.. +...+|.+|+.+|...++.+.++... |+.++..+..+....+.+|+.|||||||+|..
T Consensus 209 ~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~-A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~ 287 (345)
T 4bbr_M 209 IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTS-AEYTAKKCKEIKEIAGKSPITIAVVSIYLNIL 287 (345)
T ss_dssp HHHHCC--------------------------------------------------------------------------
T ss_pred HHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHhcccccCCChHHHHHHHHHHHHH
Confidence 999999974 77889999999999999988888888 99999999887777899999999999999998
Q ss_pred HhCCCcchhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 035817 212 LLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCIE 249 (365)
Q Consensus 212 ~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~~ 249 (365)
..+.. .-++.+....|+++..|+..++.|.+....
T Consensus 288 l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 288 LFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp --------------------------------------
T ss_pred HhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 76532 345778889999999999999999877544
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.00 E-value=2.5e-05 Score=74.09 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=78.6
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCC-CCCccCCcccchhhhHHHHHHHHhhhccCCC-ChhhhhhccccCHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQ-LPTVLDHVRDDIVLAANSCLTLAWKMRDNSF-SVPEFLGKWNLDKDLMLKM 141 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~-~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~-pl~dl~~~~~~t~~~Il~m 141 (365)
.+..+-+++.+|+..|+.|+||+..+.. +... ....+-+-++||.+|+|+-+... .-..+..-..++.+++.+|
T Consensus 83 RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~----~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~L 158 (293)
T 2pmi_B 83 RLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLN----SLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNIL 158 (293)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCS----TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccC----CchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHH
Confidence 7777888999999999999999998543 3321 25678888999999999977654 3445544467899999999
Q ss_pred HHHHHHhcCCccccCChHHHHHHHHHHCC
Q 035817 142 ELQILRGLKWQMRAVTPICLVRFFVEMIP 170 (365)
Q Consensus 142 E~~IL~~L~w~L~~pTp~~FL~~fl~~l~ 170 (365)
|+..|..|+|+|.+. +..|..+++...+
T Consensus 159 E~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 159 ENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp HHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred HHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 999999999999765 4556666655543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.60 E-value=0.0056 Score=54.25 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=72.5
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
..+..++++.++...|..++.+........ ......+|++|+++|++......+..++.....++..+|.+.=+
T Consensus 114 r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~------gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~ 187 (200)
T 1ais_B 114 KFADELGLSEKVRRRAIEILDEAYKRGLTS------GKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 187 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTCCT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCccc------CCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 778889999999999999999999765544 25688999999999999988877888886666689999999999
Q ss_pred HHHHhcCCccc
Q 035817 144 QILRGLKWQMR 154 (365)
Q Consensus 144 ~IL~~L~w~L~ 154 (365)
.+.+.|+.++.
T Consensus 188 ~l~~~l~~~~~ 198 (200)
T 1ais_B 188 ELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHcCCCCC
Confidence 99999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.89 E-value=0.061 Score=47.74 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHH
Q 035817 157 TPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDL 236 (365)
Q Consensus 157 Tp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l 236 (365)
....++..+...++..+.+... |..++...+....+.++++-.+|+||+|+|.+.-+. +.-...+...++++..+|
T Consensus 7 ~a~~~I~~~~~~L~L~~~v~~~-A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~---p~~l~di~~~~~~~~~~i 82 (207)
T 1c9b_A 7 NAFKEITTMADRINLPRNIVDR-TNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV---PRTFKEICAVSRISKKEI 82 (207)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC---CCCHHHHHHTSSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCCHHHH
Confidence 3567889999999988778777 888888888777888999999999999999987653 334577788889999999
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+...|.+.+
T Consensus 83 ~~~~~~ll~~L 93 (207)
T 1c9b_A 83 GRCFKLILKAL 93 (207)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988887755
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=93.83 E-value=0.34 Score=46.79 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=76.3
Q ss_pred ccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCH
Q 035817 154 RAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEE 233 (365)
Q Consensus 154 ~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~ 233 (365)
+....+..|..+...++....+... |..++..+.....+-+.+...+||||||+|.+..+ .+.....+..+++++.
T Consensus 125 ~L~~a~~~I~~~~~~L~Lp~~v~d~-A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~---~prtl~eI~~~~~v~~ 200 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAELPKIVKDC-AKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVKT 200 (345)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC---CBCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC---CCccHHHHHHHhCCCH
Confidence 4566888999999999998888888 99999998877667788999999999999998764 2345677888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 035817 234 EDLETCLDETYEKCI 248 (365)
Q Consensus 234 ~~l~~c~~~l~~l~~ 248 (365)
.+|..+++.|...+.
T Consensus 201 keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp THHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987664
No 23
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=92.08 E-value=2.2 Score=38.10 Aligned_cols=143 Identities=12% Similarity=0.096 Sum_probs=88.7
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhh-hccccCHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFL-GKWNLDKDLMLKME 142 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~-~~~~~t~~~Il~mE 142 (365)
.++.+-+++...+--||.+--.|.-...-...+ ..+-|-+|++|+.||+----.++|+.++. -+.....-++.+.|
T Consensus 21 ~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqR---vE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvelrr~E 97 (260)
T 3h4c_A 21 GLHKKAVLPEPVLDRGIELARAFVGGRRARGQR---VERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVELRRAD 97 (260)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHHHHHH
T ss_pred HHHhhccCcHHHHHHHHHHHHHHhhhhhhhccc---ccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHHHHHH
Confidence 788888999999999999999998654332111 14678999999999998777778887763 23333333333333
Q ss_pred HHHHHhcCCc-----cccCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHH
Q 035817 143 LQILRGLKWQ-----MRAVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACR 211 (365)
Q Consensus 143 ~~IL~~L~w~-----L~~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~ 211 (365)
|++.|+-. +.-.-.-..|.+|+.+++..-.++..+|..++...-.--.+..+.--.--.-|+++|+.
T Consensus 98 --iv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLArT 169 (260)
T 3h4c_A 98 --IVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLART 169 (260)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred --HHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45555532 22222345667788888776455554465555533333334455544444556667764
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=91.86 E-value=1.2 Score=40.03 Aligned_cols=86 Identities=7% Similarity=0.072 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccC-CCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc-------
Q 035817 158 PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTR-FRPSVIAASAVLTACRLLYDDIYEENKKILLSRK------- 229 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~-~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~------- 229 (365)
..+++......++........ |..++...+....+.. +.+-.||+||+++|.+.-+.. .-.+.+..++
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~-A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~---~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLAT-AIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECP---VHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCc---ccHHHHHHHHHHHccch
Confidence 467888888888888777777 8888888887788888 999999999999999876532 1223333333
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q 035817 230 -YVEEEDLETCLDETYEKC 247 (365)
Q Consensus 230 -~~~~~~l~~c~~~l~~l~ 247 (365)
.++.++|..+-..|.+.+
T Consensus 107 ~~~~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVL 125 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHC
Confidence 578999988888877655
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.16 Score=48.98 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHH
Q 035817 155 AVTPICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEE 234 (365)
Q Consensus 155 ~pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~ 234 (365)
....+.++..+...++....+... |..+...++....+-+.+...|||||||+|.+..+ .+.-...+..+++++..
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~-A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~---~prtl~ei~~~~~v~~k 201 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDC-AKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTH-HHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB---SSCCHHHHHHSSSCCSH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC---CCccHHHHHHHHCCCHH
Confidence 345678899999999988888888 99999988877777789999999999999997543 34456778888999999
Q ss_pred HHHHHHHHHHHHHH
Q 035817 235 DLETCLDETYEKCI 248 (365)
Q Consensus 235 ~l~~c~~~l~~l~~ 248 (365)
+|..+++.|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=84.08 E-value=6.3 Score=36.10 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=64.3
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++..+....+.....-.+|+||+++|.+.-+.. +.-.+.+..++ .++.++|
T Consensus 42 v~wl~~v~~~~~l~~~tl~l-Av~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~--~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYM-TVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMY--PPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccccc--CccHHHHHHHhcCCCCHHHH
Confidence 56777777777777666677 8888888887777778899999999999999876531 22234455555 4889999
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+-..|.+.+
T Consensus 119 ~~mE~~IL~~L 129 (269)
T 2b9r_A 119 RQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88888887755
No 27
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=83.92 E-value=7.6 Score=35.51 Aligned_cols=86 Identities=9% Similarity=-0.058 Sum_probs=60.8
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++..+..........-.+|+||+++|.+.-+.. +.-.+.+..++ .|+.++|
T Consensus 61 v~wl~~v~~~~~l~~~tl~l-Av~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~--p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 61 ATWMLEVCEEQKCEEEVFPL-AMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETI--PLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHTTCCTTHHHH-HHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHCCchhHHHH-HHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHhcCCCCHHHH
Confidence 45566666666665555566 7778887776677778899999999999999876531 22234445554 4889999
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+-..|.+.+
T Consensus 138 ~~mE~~IL~~L 148 (271)
T 2w96_A 138 LQMELLLVNKL 148 (271)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88887777655
No 28
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=81.46 E-value=8.5 Score=34.83 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=64.9
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++..+..........-.+|+||+++|.+.-... +.-.+.+..++ .++.++|
T Consensus 56 vdwl~~v~~~~~l~~etl~l-Av~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~--~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPL-SVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVK--PMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHH-HHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHCCCchHHHH-HHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccC--CCCHHHHHHHhCCCCCHHHH
Confidence 56777777777777777777 8888998887777888999999999999999876531 22234444554 3789999
Q ss_pred HHHHHHHHHHHH
Q 035817 237 ETCLDETYEKCI 248 (365)
Q Consensus 237 ~~c~~~l~~l~~ 248 (365)
..+-..|.+.+.
T Consensus 133 ~~mE~~IL~~L~ 144 (254)
T 2f2c_A 133 INQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888877663
No 29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.98 E-value=9.1 Score=35.39 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=46.3
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
.+||......++........ |..++...+....+..+.+-.||+||+++|.+.-+
T Consensus 47 ~~~I~~v~~~l~L~~~t~~t-A~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE 101 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIAT-ATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 101 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhc
Confidence 56777777788877777777 88888888888888999999999999999998765
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=80.61 E-value=6.3 Score=35.83 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++..+....+.....-.+|+||+++|.+.-+.. +.-.+.+..++ .++.++|
T Consensus 43 vdwl~~v~~~~~l~~~tl~l-Av~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~--~~~~~d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHL-AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIY--PPEVAEFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccC--CCCHHHHHHHHcCCcCHHHH
Confidence 45666666666666555555 6667766665555556677789999999999876531 22234445555 4888888
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+-..|.+.+
T Consensus 120 ~~mE~~iL~~L 130 (260)
T 2cch_B 120 LRMEHLVLKVL 130 (260)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88887777655
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=80.55 E-value=7.4 Score=35.28 Aligned_cols=86 Identities=9% Similarity=-0.055 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++..+..........-.+|+||+++|.+.-... +.-.+.+..++ .++.++|
T Consensus 55 vdwl~ev~~~~~l~~etl~l-Av~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~--~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVAL-ALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLT--PISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCccHHHH-HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcccc--CCCHHHHHHHHCCCCCHHHH
Confidence 46677777777776666666 8888887776666666778899999999999876431 22234455554 4899999
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+-..|.+.+
T Consensus 132 ~~mE~~iL~~L 142 (257)
T 1g3n_C 132 IDQEKELLEKL 142 (257)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88887777765
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=80.12 E-value=13 Score=35.04 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHHHHCC--CChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 160 CLVRFFVEMIP--IGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 160 ~FL~~fl~~l~--~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
.++..+...++ ....+... |..++...+....+..+.|-.||+||+++|.+.-+
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~t-A~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE 117 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGT-ACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHH-HHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHH-HHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhc
Confidence 45667777777 66667776 88899988888889999999999999999998765
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=78.73 E-value=5 Score=36.34 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 158 PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
..+|+......++........ |..++...+....+..+.+-.+|+||+++|.+.-+
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~-A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE 89 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINT-AIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE 89 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH-HHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHhhCChhhhCHHHHHHHHHHHHhcccc
Confidence 568888888888888777777 88999988888889999999999999999998765
No 34
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=77.08 E-value=6 Score=35.74 Aligned_cols=55 Identities=11% Similarity=-0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
.+|+......++........ |..++...+....+..+.+-.+|+||+++|.+.-+
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~-A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE 99 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLAT-GIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE 99 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc
Confidence 57888888888888777777 88999988888888999999999999999998765
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=74.03 E-value=18 Score=33.78 Aligned_cols=86 Identities=10% Similarity=-0.047 Sum_probs=60.5
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEEDL 236 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~l 236 (365)
.+|+......++........ |..+++.-+....+.....-.+|++|+++|.+.-... +.-.+.+..++ .|+.++|
T Consensus 75 vdwl~ev~~~~~l~~~t~~l-Av~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~--p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 75 AYWMLEVCEEQRCEEEVFPL-AMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETT--PLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHTTCCTTHHHH-HHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSS--CCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHhCCcHhHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHhccCccHHHH
Confidence 46666777777766666666 7777777776667778889999999999999875432 11123344444 3788888
Q ss_pred HHHHHHHHHHH
Q 035817 237 ETCLDETYEKC 247 (365)
Q Consensus 237 ~~c~~~l~~l~ 247 (365)
..+-..|.+.+
T Consensus 152 ~~mE~~IL~~L 162 (306)
T 3g33_B 152 RDWEVLVLGKL 162 (306)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88877777655
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=73.81 E-value=18 Score=33.38 Aligned_cols=86 Identities=7% Similarity=-0.058 Sum_probs=58.2
Q ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHccc-hhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHH
Q 035817 159 ICLVRFFVEMIPIGKGIERRTLNEIIIQTQDN-ISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEED 235 (365)
Q Consensus 159 ~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d-~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~ 235 (365)
.+|+......++........ |..+++..+.. ........-.+|+||+++|.+.-+.. +.-.+.+..++ .++.++
T Consensus 54 v~wl~~v~~~~~l~~~tl~l-Av~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~--~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 54 LDWLMEVCEVYKLHRETFYL-AQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIY--PPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHTTCBHHHHHH-HHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHhCCCccHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccC--CCcHHHHHHHHcCCCCHHH
Confidence 35566666666665555555 66677665544 34556788899999999999876531 22234555555 489999
Q ss_pred HHHHHHHHHHHH
Q 035817 236 LETCLDETYEKC 247 (365)
Q Consensus 236 l~~c~~~l~~l~ 247 (365)
|..+-..|.+.+
T Consensus 131 i~~mE~~IL~~L 142 (283)
T 1w98_B 131 ILTMELMIMKAL 142 (283)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999888887765
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=73.62 E-value=5.7 Score=38.25 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhC
Q 035817 158 PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLY 214 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~ 214 (365)
..+||..+...++........ |..++...+....+..+.+-.||+|||++|.+.-.
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~t-Av~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE 96 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINT-AIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEE 96 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHH-HHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhcc
Confidence 567888888888877777777 88999988888889999999999999999998654
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=61.75 E-value=54 Score=29.62 Aligned_cols=87 Identities=9% Similarity=-0.104 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHCCCChhHHHHHHHHHHHHHccchhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhc--CCCHHH
Q 035817 158 PICLVRFFVEMIPIGKGIERRTLNEIIIQTQDNISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRK--YVEEED 235 (365)
Q Consensus 158 p~~FL~~fl~~l~~~~~l~~~~a~~li~~~l~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~--~~~~~~ 235 (365)
..+|+......++...+.... |..+++.-+..........-.+|++|+++|.+.-... +.-.+.+..++ .|+.++
T Consensus 52 lvdWl~ev~~~~~l~~eT~~l-Av~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~--p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 52 LTTWMFCVCKDLRQDNNVFPL-AVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM--PIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHTTCCTTHHHH-HHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHH-HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHhCCCCCHHH
Confidence 456677777777766666666 7777777666666667778899999999999876532 22234444444 478888
Q ss_pred HHHHHHHHHHHH
Q 035817 236 LETCLDETYEKC 247 (365)
Q Consensus 236 l~~c~~~l~~l~ 247 (365)
|...=..|.+.+
T Consensus 129 i~~mE~~IL~~L 140 (252)
T 1f5q_B 129 LLTLEVKSLDTL 140 (252)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 887777766655
No 39
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=50.37 E-value=1.1e+02 Score=28.57 Aligned_cols=89 Identities=8% Similarity=0.019 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHCCCChhHHHHHHHHHHHH-Hcc--chhccCCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCC
Q 035817 156 VTPICLVRFFVEMIPIGKGIERRTLNEIIIQ-TQD--NISFTRFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVE 232 (365)
Q Consensus 156 pTp~~FL~~fl~~l~~~~~l~~~~a~~li~~-~l~--d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~ 232 (365)
.+..+|+.++.+.........-. +..+++. ... ..........-+-++|+.+|.+.++... .+...+.++.|++
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~-ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~--ysN~~wAkVgGis 151 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMT-SLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSF--STNAHYAKVGGVR 151 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHH-HHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSC--CCHHHHHHHHTSC
T ss_pred CcHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccc--cChhHhhhccCcC
Confidence 35678999888887776444433 4333432 221 2223457788899999999999997543 4678888889999
Q ss_pred HHHHHHHHHHHHHHH
Q 035817 233 EEDLETCLDETYEKC 247 (365)
Q Consensus 233 ~~~l~~c~~~l~~l~ 247 (365)
..++...=..+..++
T Consensus 152 l~ELN~LE~eFL~lL 166 (293)
T 2pmi_B 152 CHELNILENDFLKRV 166 (293)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999887766666554
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=50.05 E-value=61 Score=25.18 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=55.6
Q ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCCCCccCCcccchhhhHHHHHHHHhhhccCCCChhhhhhccccCHHHHHHHHH
Q 035817 64 QNSKSDKLDAFIPYLAMNIFDRFISRHQLPTVLDHVRDDIVLAANSCLTLAWKMRDNSFSVPEFLGKWNLDKDLMLKMEL 143 (365)
Q Consensus 64 ~v~~~~~l~~eTl~lAV~~lDRfls~~~~~~~k~~~~~~lqLiavaCL~LAsK~eE~~~pl~dl~~~~~~t~~~Il~mE~ 143 (365)
+++..||+.. ..-.|-.+|++|=....-.. +.+..-.-...+++|+|.|||.--..++-..++.-...++.++-+.+.
T Consensus 8 dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~-~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l~~ 85 (95)
T 3m03_A 8 DLAVQFSCIE-AVNMASKILKSYESSLPQTQ-QVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCK 85 (95)
T ss_dssp HHHHHHTCGG-GHHHHHHHHHHHHTTSCHHH-HHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHhCCHH-HHHHHHHHHHHHHHHhHHHh-hccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHH
Confidence 6777888765 66788899999985532100 000012345677889999999988877766676666777777777766
Q ss_pred HHHH
Q 035817 144 QILR 147 (365)
Q Consensus 144 ~IL~ 147 (365)
.+-+
T Consensus 86 ~~e~ 89 (95)
T 3m03_A 86 QLEK 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 41
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=47.04 E-value=6.7 Score=29.97 Aligned_cols=20 Identities=40% Similarity=0.821 Sum_probs=16.3
Q ss_pred CCCCCCCCcccccccccccCC
Q 035817 338 APDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+|.--|||||.-+.||. |.|
T Consensus 44 ep~GkndGsv~G~rYF~-C~~ 63 (84)
T 4b6m_A 44 EPVGKGDGTVKGTRVFQ-CQP 63 (84)
T ss_dssp SSCCSBSSEETTEESSC-CCT
T ss_pred CCCCCcCCEECCEEEEe-cCC
Confidence 35567999999999996 665
No 42
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=43.83 E-value=9.6 Score=29.61 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.5
Q ss_pred CCCCCCCCcccccccccccCC
Q 035817 338 APDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+|---|||+|..+.||..|.+
T Consensus 51 EP~GknDGsv~G~ryF~~c~~ 71 (92)
T 1whm_A 51 NPIGNWDGRFDGVQLCSFACV 71 (92)
T ss_dssp SSCCCCCSEETTEESCSSCCT
T ss_pred CCCCCCCCeECCEEeccccCC
Confidence 456789999999999987754
No 43
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=42.34 E-value=8.8 Score=29.26 Aligned_cols=19 Identities=47% Similarity=1.015 Sum_probs=15.4
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||||....||. |.|
T Consensus 45 p~GkndGsv~G~rYF~-c~~ 63 (84)
T 2cp3_A 45 PLGKNDGAVAGTRYFQ-CPP 63 (84)
T ss_dssp SCCSBSSEETTEESSC-CCT
T ss_pred CCCcCCCEECCEEeee-cCC
Confidence 3467999999999997 554
No 44
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=40.32 E-value=9.9 Score=28.07 Aligned_cols=19 Identities=47% Similarity=0.997 Sum_probs=15.7
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||+|....||. |.|
T Consensus 40 p~GkndGsv~G~rYF~-c~p 58 (72)
T 3rdv_A 40 PIGKNDGSVAGVRYFQ-CEP 58 (72)
T ss_dssp SCSSBSSEETTEESCC-CST
T ss_pred CCCccCCEECCEEeCc-cCC
Confidence 4467999999999998 665
No 45
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=37.66 E-value=12 Score=29.54 Aligned_cols=19 Identities=47% Similarity=0.976 Sum_probs=15.6
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||||....||. |.|
T Consensus 63 p~GKnDGsv~G~rYF~-C~p 81 (102)
T 1whh_A 63 PTGKHDGSVFGVRYFT-CAP 81 (102)
T ss_dssp SCCSSSSEETTEECSC-CCT
T ss_pred CCCcCCCEECCEEeee-cCC
Confidence 4567999999999997 544
No 46
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=37.22 E-value=12 Score=28.93 Aligned_cols=19 Identities=47% Similarity=1.006 Sum_probs=15.4
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||||....||. |.|
T Consensus 39 p~GKndGsv~G~rYF~-C~p 57 (90)
T 2e3h_A 39 PLGKNDGAVAGTRYFQ-CQP 57 (90)
T ss_dssp SCCSBSSEETTEESCC-CCT
T ss_pred CCCCCCCEECCEEeee-cCC
Confidence 3467999999999997 554
No 47
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=30.58 E-value=1.2e+02 Score=23.47 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 035817 195 RFRPSVIAASAVLTACRLLYDDIYEENKKILLSRKYVEEEDLETCLDETYEKCI 248 (365)
Q Consensus 195 ~~~PS~IAaAai~lA~~~l~~~~~~~w~~~L~~~~~~~~~~l~~c~~~l~~l~~ 248 (365)
.+.--.-++||+|.+.+.++.. .-...|...+|+.+.++......+..+..
T Consensus 42 D~s~P~f~aaA~~~acr~~K~k---VdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKLK---VDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCC---CCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHccC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4444567888899998877632 23467888899999999999998887764
No 48
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=30.39 E-value=17 Score=28.11 Aligned_cols=19 Identities=47% Similarity=0.955 Sum_probs=15.6
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||||....||. |.|
T Consensus 51 p~GKndGsv~G~rYF~-C~~ 69 (93)
T 1txq_A 51 AKGKNDGTVQGRKYFT-CDE 69 (93)
T ss_dssp SCSSBSSEETTEESCC-CCT
T ss_pred CCCCCCCEECCEEeee-cCC
Confidence 4568999999999997 554
No 49
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=29.34 E-value=18 Score=28.15 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=14.2
Q ss_pred CCCCCCCcccccccccc
Q 035817 339 PDDPNDGTVEARNYFDL 355 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~ 355 (365)
|.--|||||....||.+
T Consensus 48 p~GKnDGsv~G~rYF~C 64 (96)
T 2z0w_A 48 PHGKNDGSVGGVQYFSC 64 (96)
T ss_dssp SCSSBSSEETTEESSCC
T ss_pred CCCCCCCEECCEEeeec
Confidence 35679999999999974
No 50
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=28.27 E-value=19 Score=28.85 Aligned_cols=19 Identities=47% Similarity=0.955 Sum_probs=15.8
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||+|....||. |.|
T Consensus 72 p~GKnDGsv~G~rYF~-C~p 90 (112)
T 2coy_A 72 AKGKNDGTVQGRKYFT-CDE 90 (112)
T ss_dssp SCSSBSSEETTEECSC-CCT
T ss_pred CCCCCCCEECCEEeee-cCC
Confidence 4678999999999997 554
No 51
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=26.05 E-value=22 Score=30.66 Aligned_cols=19 Identities=47% Similarity=1.006 Sum_probs=15.5
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
|.--|||+|....||. |.|
T Consensus 76 P~GKnDGsv~G~rYF~-C~p 94 (172)
T 2cp6_A 76 PLGKNDGAVAGTRYFQ-CQP 94 (172)
T ss_dssp SCCSBSSEETTEECCC-CCT
T ss_pred CCCccCCEECCEEeee-eCC
Confidence 3467999999999998 554
No 52
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.49 E-value=25 Score=27.78 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=16.5
Q ss_pred CCCCCCCCcccccccccccCC
Q 035817 338 APDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+|.--|||||....||. |.|
T Consensus 57 ep~GKnDGsv~G~rYF~-C~p 76 (104)
T 1ixd_A 57 ECAGCTDGTFRGTRYFT-CAL 76 (104)
T ss_dssp CCTTCBSSEETTEECSC-CCT
T ss_pred CCCCCCCCEECCEEeee-cCC
Confidence 45678999999999995 654
No 53
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.26 E-value=27 Score=27.05 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCCCCCCcccccccccccCC
Q 035817 339 PDDPNDGTVEARNYFDLCAP 358 (365)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ 358 (365)
+.--|||||.-+.||. |.|
T Consensus 56 ~~GKnDGsv~G~rYF~-C~~ 74 (95)
T 1whl_A 56 GQGFTDGVYQGKQLFQ-CDE 74 (95)
T ss_dssp SCCSSTTEETTEECCC-CCT
T ss_pred cCCCCCCEECCEEEee-cCC
Confidence 3566999999999995 544
No 54
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=22.68 E-value=1.1e+02 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=24.6
Q ss_pred ccchhhhHHHHHHHHhhhc--cCCCChhhhhhc
Q 035817 100 RDDIVLAANSCLTLAWKMR--DNSFSVPEFLGK 130 (365)
Q Consensus 100 ~~~lqLiavaCL~LAsK~e--E~~~pl~dl~~~ 130 (365)
..++|.+-.|||+||--+- |+..|++-++.+
T Consensus 75 e~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~ 107 (149)
T 3o0g_D 75 DHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 107 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCcchhhc
Confidence 4789999999999998885 555688877543
Done!