Query 035818
Match_columns 568
No_of_seqs 394 out of 1646
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3.3E-79 7.2E-84 614.7 22.4 244 176-422 2-258 (258)
2 KOG4441 Proteins containing BT 100.0 2.7E-28 5.9E-33 272.6 20.1 227 3-297 33-265 (571)
3 PHA02713 hypothetical protein; 100.0 1.1E-27 2.4E-32 267.6 18.9 220 3-292 22-248 (557)
4 PHA03098 kelch-like protein; P 99.9 2.9E-25 6.4E-30 246.3 20.6 220 3-293 6-237 (534)
5 PHA02790 Kelch-like protein; P 99.9 9.4E-25 2E-29 240.1 16.1 171 3-217 19-195 (480)
6 PF00651 BTB: BTB/POZ domain; 99.7 7E-17 1.5E-21 141.5 9.0 99 4-110 8-110 (111)
7 KOG4350 Uncharacterized conser 99.7 4.5E-16 9.8E-21 161.6 12.2 206 3-278 41-253 (620)
8 smart00225 BTB Broad-Complex, 99.6 1.2E-15 2.6E-20 126.3 8.6 89 8-104 1-90 (90)
9 KOG2075 Topoisomerase TOP1-int 99.6 1.3E-14 2.8E-19 154.2 13.3 180 3-218 111-296 (521)
10 KOG4591 Uncharacterized conser 99.4 1.3E-12 2.7E-17 125.4 10.2 149 4-196 64-220 (280)
11 KOG4682 Uncharacterized conser 99.2 2.3E-10 5.1E-15 119.7 12.5 171 4-216 67-246 (488)
12 KOG0783 Uncharacterized conser 98.9 2E-09 4.3E-14 120.4 7.3 123 7-147 713-845 (1267)
13 KOG0783 Uncharacterized conser 98.5 1.8E-07 3.9E-12 105.2 6.7 65 4-70 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.5 0.00012 2.7E-09 76.2 4.9 95 9-111 1-104 (317)
15 KOG2716 Polymerase delta-inter 97.4 0.00083 1.8E-08 67.4 9.2 95 9-111 7-105 (230)
16 PF02214 BTB_2: BTB/POZ domain 97.2 0.00045 9.7E-09 59.4 4.4 81 9-92 1-88 (94)
17 smart00512 Skp1 Found in Skp1 97.0 0.0028 6E-08 55.8 7.8 79 9-90 4-104 (104)
18 PF07707 BACK: BTB And C-termi 96.7 0.00064 1.4E-08 58.6 1.6 69 179-272 34-102 (103)
19 KOG2838 Uncharacterized conser 96.5 0.0023 5E-08 65.0 4.2 80 5-86 129-214 (401)
20 smart00875 BACK BTB And C-term 96.0 0.029 6.3E-07 47.5 7.7 65 180-270 35-99 (101)
21 KOG2838 Uncharacterized conser 95.7 0.012 2.5E-07 60.1 4.5 56 17-74 262-329 (401)
22 KOG3473 RNA polymerase II tran 95.6 0.049 1.1E-06 47.5 7.1 73 14-89 25-111 (112)
23 KOG1724 SCF ubiquitin ligase, 95.4 0.057 1.2E-06 51.7 7.7 90 13-112 12-128 (162)
24 PF03931 Skp1_POZ: Skp1 family 95.4 0.078 1.7E-06 42.4 7.3 56 9-68 3-59 (62)
25 KOG0511 Ankyrin repeat protein 95.2 0.056 1.2E-06 57.5 7.7 74 16-92 301-379 (516)
26 KOG2714 SETA binding protein S 92.3 0.43 9.4E-06 51.8 7.8 82 9-92 13-99 (465)
27 COG5201 SKP1 SCF ubiquitin lig 90.7 1.2 2.5E-05 41.1 7.6 93 9-111 4-122 (158)
28 KOG0511 Ankyrin repeat protein 88.6 0.2 4.3E-06 53.5 1.3 85 4-92 147-233 (516)
29 KOG1987 Speckle-type POZ prote 88.0 0.26 5.6E-06 50.9 1.7 89 15-111 109-201 (297)
30 KOG1665 AFH1-interacting prote 86.9 2.3 5E-05 42.7 7.5 93 5-105 7-105 (302)
31 PF01466 Skp1: Skp1 family, di 80.8 2.3 4.9E-05 35.5 4.0 34 72-111 10-43 (78)
32 KOG2715 Uncharacterized conser 80.7 5.8 0.00013 38.3 7.0 95 9-111 23-122 (210)
33 KOG3840 Uncharaterized conserv 70.3 18 0.00038 38.1 7.8 86 8-95 97-189 (438)
34 KOG2016 NEDD8-activating compl 67.6 1.8E+02 0.0038 32.6 14.9 62 341-402 343-434 (523)
35 PF04508 Pox_A_type_inc: Viral 67.5 7 0.00015 25.4 2.7 19 492-510 2-20 (23)
36 PF01166 TSC22: TSC-22/dip/bun 60.3 13 0.00029 29.6 3.6 34 481-514 11-44 (59)
37 PF14363 AAA_assoc: Domain ass 57.6 6.8 0.00015 34.2 1.9 42 375-417 30-71 (98)
38 COG2433 Uncharacterized conser 50.3 1.6E+02 0.0034 34.1 11.3 164 337-515 298-467 (652)
39 PF07407 Seadorna_VP6: Seadorn 40.8 32 0.00069 36.5 3.9 32 477-508 32-63 (420)
40 PF08581 Tup_N: Tup N-terminal 40.8 27 0.00059 29.6 2.8 25 491-515 39-63 (79)
41 PF14077 WD40_alt: Alternative 38.2 15 0.00033 27.8 0.8 20 494-513 14-33 (48)
42 COG3510 CmcI Cephalosporin hyd 33.5 31 0.00067 34.3 2.4 34 373-406 184-219 (237)
43 PF10473 CENP-F_leu_zip: Leuci 33.1 63 0.0014 30.4 4.2 36 479-514 75-110 (140)
44 PF10929 DUF2811: Protein of u 32.3 34 0.00073 27.3 1.9 19 384-402 8-26 (57)
45 PF02183 HALZ: Homeobox associ 32.2 54 0.0012 24.7 3.0 25 479-503 14-38 (45)
46 PRK14127 cell division protein 30.6 67 0.0015 28.9 3.8 33 478-510 38-70 (109)
47 TIGR02894 DNA_bind_RsfA transc 30.2 75 0.0016 30.5 4.3 32 482-513 102-133 (161)
48 KOG2723 Uncharacterized conser 30.0 1.9E+02 0.0041 29.3 7.3 81 9-92 11-97 (221)
49 PHA01750 hypothetical protein 29.4 1E+02 0.0022 25.2 4.3 34 482-515 40-73 (75)
50 PF13815 Dzip-like_N: Iguana/D 27.3 2.5E+02 0.0055 25.2 7.1 54 433-514 64-117 (118)
51 PF07989 Microtub_assoc: Micro 27.0 1.3E+02 0.0029 25.1 4.8 36 479-514 38-73 (75)
52 PHA03098 kelch-like protein; P 26.6 4.1E+02 0.0089 29.7 10.2 34 72-111 104-137 (534)
53 PF10932 DUF2783: Protein of u 26.1 58 0.0013 26.2 2.3 23 383-408 10-32 (60)
54 PRK15322 invasion protein OrgB 26.0 3.3E+02 0.0073 27.2 8.0 104 283-397 72-203 (210)
55 KOG4571 Activating transcripti 25.4 51 0.0011 34.5 2.4 38 478-515 249-286 (294)
56 KOG4350 Uncharacterized conser 24.9 49 0.0011 36.3 2.3 32 73-110 145-176 (620)
57 PRK13922 rod shape-determining 23.9 1E+02 0.0023 31.6 4.5 37 478-514 70-109 (276)
58 PF11123 DNA_Packaging_2: DNA 23.2 56 0.0012 27.5 1.8 16 384-399 31-46 (82)
59 TIGR01834 PHA_synth_III_E poly 23.0 73 0.0016 34.0 3.1 26 490-515 288-313 (320)
60 PF02183 HALZ: Homeobox associ 22.6 1.3E+02 0.0029 22.6 3.6 21 479-499 21-41 (45)
61 PF06156 DUF972: Protein of un 21.9 1.1E+02 0.0024 27.3 3.6 27 479-505 31-57 (107)
62 PF05377 FlaC_arch: Flagella a 21.9 1.4E+02 0.003 23.7 3.6 23 481-503 18-40 (55)
63 COG4467 Regulator of replicati 21.4 87 0.0019 28.1 2.8 29 479-507 31-61 (114)
64 PF07707 BACK: BTB And C-termi 21.2 89 0.0019 26.2 2.8 73 348-421 22-97 (103)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3.3e-79 Score=614.71 Aligned_cols=244 Identities=52% Similarity=0.846 Sum_probs=216.9
Q ss_pred hhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccCcccchHHHHHHHHHHHhhc
Q 035818 176 EWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLL 255 (568)
Q Consensus 176 dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lL 255 (568)
|||+||++.|++++|+|||.+|+++|+++++|+++|++||++|+|+..+.. +..............+||.+||+||+||
T Consensus 2 dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 2 DWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-ccccccccccchhHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999985431 1111122333566789999999999999
Q ss_pred CCCCCCCCChHHHHHHHHhhhhhcCCHHhHHHHHHHHHhhhcc-------------CCCccccHHHHHHHHHHHHhcccc
Q 035818 256 PNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEM-------------TGDSLFDVDTVHRILINFLQRIED 322 (568)
Q Consensus 256 P~~r~~~vs~~fL~~LLr~a~~l~as~~Cr~~LE~rIg~qLd~-------------~~~~~ydvd~V~ril~~Fl~~~~~ 322 (568)
|.++ +++||+|||+|||+|+++++|..||.+||+|||.|||| ..+|+||||+|+|||++||.+++.
T Consensus 81 P~e~-~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~ 159 (258)
T PF03000_consen 81 PPEK-GSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE 159 (258)
T ss_pred CCCC-CcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence 9999 99999999999999999999999999999999999999 234899999999999999998654
Q ss_pred cCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhhhcCCCCCChHHHHHHHHhcCCCCcccchhHHHHHHHHHHhCCCCCH
Q 035818 323 EDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTE 402 (568)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~Hp~ls~ 402 (568)
.+ ....+......+++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||+
T Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~ 238 (258)
T PF03000_consen 160 AG-EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSE 238 (258)
T ss_pred cc-cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCH
Confidence 32 11122223344567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccccCCHHHh
Q 035818 403 HECKKLCKFIDCQKLSQEAS 422 (568)
Q Consensus 403 ~Er~~lC~~~dc~KLS~eac 422 (568)
+||++||++|||||||+|||
T Consensus 239 ~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 239 EERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHHHhhCCcccCCcccC
Confidence 99999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=272.59 Aligned_cols=227 Identities=21% Similarity=0.344 Sum_probs=196.9
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
.+.+|||++.|++++|++||.|||++|+||++||+ +++|+.+.+|+|++++ +++++.+++|+||+++.|+.+||+.|
T Consensus 33 ~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nVq~l 110 (571)
T KOG4441|consen 33 EGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNVQEL 110 (571)
T ss_pred hCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHhHHHH
Confidence 36899999999999999999999999999999999 7999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHH-----HhcccchHHHHHhchHHHHHHHHHHHhhhhhhhc
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVL-----SICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVS 156 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL-----~sc~~l~~~Ae~~~lv~rci~~la~~a~~~~~~~ 156 (568)
+.||.+|||++ +...|++||.+.+ +++||++|. ++|..|...|+.| +.+++.+
T Consensus 111 l~aA~~lQi~~------v~~~C~~fL~~~l--~~~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~------------- 168 (571)
T KOG4441|consen 111 LEAASLLQIPE------VVDACCEFLESQL--DPSNCLGIRRFAELHSCTELLEVADEY-ILQHFAE------------- 168 (571)
T ss_pred HHHHHHhhhHH------HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHH-------------
Confidence 99999999999 9999999999999 999999983 3455554444444 2222211
Q ss_pred ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccC
Q 035818 157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSN 236 (568)
Q Consensus 157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~ 236 (568)
-|-.|||..|+.+.+..+|+......-+|+.|+++++.|+++....+
T Consensus 169 -------------------v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R-------------- 215 (571)
T KOG4441|consen 169 -------------------VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEER-------------- 215 (571)
T ss_pred -------------------HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhH--------------
Confidence 04568999999999999999988888899999999999998887632
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhhcCCHHhHHHHHHHHHhhhc
Q 035818 237 RTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLE 297 (568)
Q Consensus 237 ~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l~as~~Cr~~LE~rIg~qLd 297 (568)
..+...++++| |.+.+|..||...+....++..++.|+..|......+|-
T Consensus 216 ----~~~~~~ll~~v-------r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~ 265 (571)
T KOG4441|consen 216 ----EEHLPALLEAV-------RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLL 265 (571)
T ss_pred ----HHHHHHHHHhc-------CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhC
Confidence 35667788888 678899999999999999999999999999888744443
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=267.59 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=175.4
Q ss_pred CCCcccEEEEEc-CeEEEeehHhhcccCHHHHHhhc-CCccC-CCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 3 SDVAGDITIVVD-GESFLLHKFPLVSRSGKIRKMVA-DAKDS-NSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 3 s~~~sDV~i~V~-g~~F~~HK~vLas~S~yFr~lf~-~~~es-~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
.+.+|||+|.|+ |++|++||.|||++|+||++||+ +++|+ .+.+|+|++++ +++|+.+++|+||++ |+.+||+
T Consensus 22 ~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~~nv~ 97 (557)
T PHA02713 22 DDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISSMNVI 97 (557)
T ss_pred CCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCHHHHH
Confidence 478999999998 89999999999999999999999 78875 47899999999 999999999999997 7899999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhhc
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLVS 156 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~~ 156 (568)
+|+.||++||++. |+..|++||.+.+ +++||+.++.. +..+. |.+.|.+.|.. ++.
T Consensus 98 ~ll~aA~~lqi~~------l~~~C~~~l~~~l--~~~NCl~i~~~-------~~~~~~~~L~~~a~~~i~~----~f~-- 156 (557)
T PHA02713 98 DVLKCADYLLIDD------LVTDCESYIKDYT--NHDTCIYMYHR-------LYEMSHIPIVKYIKRMLMS----NIP-- 156 (557)
T ss_pred HHHHHHHHHCHHH------HHHHHHHHHHhhC--CccchHHHHHH-------HHhccchHHHHHHHHHHHH----HHH--
Confidence 9999999999999 9999999999999 99999999632 22221 22222222222 110
Q ss_pred ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhhhcccccccccCcccccc
Q 035818 157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGR-AGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKS 235 (568)
Q Consensus 157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~-~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~ 235 (568)
.. .-.|||..|+.+.+..+|+.... ...+|+.|++++++|+++....+
T Consensus 157 ---------------~v---~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r------------- 205 (557)
T PHA02713 157 ---------------TL---ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE------------- 205 (557)
T ss_pred ---------------HH---hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH-------------
Confidence 01 12479999999999999998663 55579999999999998875432
Q ss_pred CcccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhhcCCHHhHHHHHHHH
Q 035818 236 NRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRI 292 (568)
Q Consensus 236 ~~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l~as~~Cr~~LE~rI 292 (568)
.+...||+.| |++.++.++++ .+.....+..++.|+..|++..
T Consensus 206 ------~~~~~ll~~V-------R~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~ 248 (557)
T PHA02713 206 ------EQLLCILSCI-------DIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNK 248 (557)
T ss_pred ------HHHhhhHhhh-------hHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhh
Confidence 2244788888 44667777777 5666788888999999987754
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=246.26 Aligned_cols=220 Identities=16% Similarity=0.184 Sum_probs=180.1
Q ss_pred CCCcccEEEEE--cCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 3 SDVAGDITIVV--DGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 3 s~~~sDV~i~V--~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
++.+|||+|.| +|++|++||.+|+++|+||++||+ +++ ..+|+|++ + +++|+.+++|+|||++.|+.+||.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHH
Confidence 58899999998 999999999999999999999999 455 56899999 8 999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhhc
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLVS 156 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~~ 156 (568)
+|+.||++|||++ |+..|++||.+.+ +.+||+.++ .+|+.++ |.+.|.+.|+.+...
T Consensus 80 ~ll~~A~~l~~~~------l~~~C~~~l~~~l--~~~nc~~~~-------~~a~~~~~~~L~~~~~~~i~~nf~~----- 139 (534)
T PHA03098 80 DILSIANYLIIDF------LINLCINYIIKII--DDNNCIDIY-------RFSFFYGCKKLYSAAYNYIRNNIEL----- 139 (534)
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHhC--CHhHHHHHH-------HHHHHcCcHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999 9999999999999 999999884 4566654 455666666543211
Q ss_pred ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccC
Q 035818 157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSN 236 (568)
Q Consensus 157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~ 236 (568)
.. -.+||..|+.+.+..+|++-....-+|+.|+++++.|+++....+
T Consensus 140 ----------------v~---~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r-------------- 186 (534)
T PHA03098 140 ----------------IY---NDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNK-------------- 186 (534)
T ss_pred ----------------Hh---cCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhh--------------
Confidence 00 236899999999999999877777789999999999998765422
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHH------hhhhhcCCHHhHHHHHHHHH
Q 035818 237 RTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLR------MGIMVDASIACKLELERRIA 293 (568)
Q Consensus 237 ~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr------~a~~l~as~~Cr~~LE~rIg 293 (568)
..+...|++.| |++.++..+|..+.+ ...++ .+..|+..+.....
T Consensus 187 ----~~~~~~ll~~v-------R~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 187 ----YKDICLILKVL-------RITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred ----HhHHHHHHhhc-------cccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 23456788888 678899999998876 33344 67788877765543
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=9.4e-25 Score=240.07 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=137.4
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeee--CCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLEL--HNIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L--~dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
.+.+|||++.+ |.+|+|||.|||++|+||++||+ +++|+.. +|.+ .+++ +++|+.+++|+|||++.||.+||+
T Consensus 19 ~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~nV~ 94 (480)
T PHA02790 19 TKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSHNVV 94 (480)
T ss_pred hhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhheeeeEEEecccHH
Confidence 36899987754 56999999999999999999999 7888854 5665 3899 999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhchHHHHHHHHHHHhhhhhhhcccc
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLS 159 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~lv~rci~~la~~a~~~~~~~~~~ 159 (568)
+|+.||.+|||+. +++.|++||.+.+ +++||+.+ ..+|+.|++ +.|..+|-. ...
T Consensus 95 ~ll~aA~~Lqi~~------v~~~C~~fL~~~l--~~~NCl~i-------~~~A~~y~~-----~~L~~~a~~-fi~---- 149 (480)
T PHA02790 95 NLLRASILTSVEF------IIYTCINFILRDF--RKEYCVEC-------YMMGIEYGL-----SNLLCHTKD-FIA---- 149 (480)
T ss_pred HHHHHHHHhChHH------HHHHHHHHHHhhC--CcchHHHH-------HHHHHHhCH-----HHHHHHHHH-HHH----
Confidence 9999999999999 9999999999999 99999998 566777763 223322211 100
Q ss_pred cCCCCCCccccccccch-hh--hhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 035818 160 RLDCNGESAELKSGCLE-WW--IEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQA 217 (568)
Q Consensus 160 ~~~~~~~s~~~~~~~~d-Ww--~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k 217 (568)
.++.+ .. +|||..|++ ..+|++.....-+|+.|++++++|+++
T Consensus 150 ------------~nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 150 ------------KHFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ------------HhHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 01111 11 378888986 468888777777899999999999985
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=7e-17 Score=141.50 Aligned_cols=99 Identities=31% Similarity=0.499 Sum_probs=88.7
Q ss_pred CCcccEEEEEc-CeEEEeehHhhcccCHHHHHhhcCC--ccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCC-hhhHH
Q 035818 4 DVAGDITIVVD-GESFLLHKFPLVSRSGKIRKMVADA--KDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEIT-TTNVA 79 (568)
Q Consensus 4 ~~~sDV~i~V~-g~~F~~HK~vLas~S~yFr~lf~~~--~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it-~~NV~ 79 (568)
+.+||++|.|+ |..|++||.+|+++|+||++||.+. .+....+|.+++++ +++|+.+++|+|++.+.++ .+++.
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~ 85 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVE 85 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHH
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHH
Confidence 67899999999 8999999999999999999999954 44454578999999 9999999999999999998 99999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHH
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEV 110 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~ 110 (568)
.++.+|++|+|++ |...|++||.+.
T Consensus 86 ~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 86 ELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 9999999999999 999999999874
No 7
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.66 E-value=4.5e-16 Score=161.59 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=153.1
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCCh---hhH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITT---TNV 78 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~---~NV 78 (568)
++..+||++.|++..|++||.|||+||.|||+|+. ||.|+.+..|.|++.. .++|..+++|+|||++.++. +-.
T Consensus 41 ~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~~ed~l 118 (620)
T KOG4350|consen 41 SEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGVEEDIL 118 (620)
T ss_pred cCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccchHHHH
Confidence 46789999999999999999999999999999999 8999999999999999 99999999999999999764 456
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhh
Q 035818 79 ASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLV 155 (568)
Q Consensus 79 ~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~ 155 (568)
.+.+..|..+++.+ |.....+||.+.+ ..+|...+ +..|.-|+ |...|+..+..+|-. .+
T Consensus 119 ld~LslAh~Ygf~~------Le~aiSeYl~~iL--~~~NvCmi-------fdaA~ly~l~~Lt~~C~mfmDrnA~~--lL 181 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQ------LETAISEYLKEIL--KNENVCMI-------FDAAYLYQLTDLTDYCMMFMDRNADQ--LL 181 (620)
T ss_pred HHHHHHHHhcCcHH------HHHHHHHHHHHHH--cccceeee-------eeHHHHhcchHHHHHHHHHHhcCHHh--hh
Confidence 77888888888888 9999999999998 77776554 33444333 566677666655522 11
Q ss_pred cccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCcccccc
Q 035818 156 SGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKS 235 (568)
Q Consensus 156 ~~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~ 235 (568)
-.+.|..|+-+.++.|+.-. +--..|..|+-|+..|-+..-
T Consensus 182 ----------------------~~~sFn~LSk~sL~e~l~RD-sFfApE~~IFlAv~~W~~~Ns---------------- 222 (620)
T KOG4350|consen 182 ----------------------EDPSFNRLSKDSLKELLARD-SFFAPELKIFLAVRSWHQNNS---------------- 222 (620)
T ss_pred ----------------------cCcchhhhhHHHHHHHHhhh-cccchHHHHHHHHHHHHhcCc----------------
Confidence 11346677778777776542 223467789999999875332
Q ss_pred CcccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhh
Q 035818 236 NRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMV 278 (568)
Q Consensus 236 ~~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l 278 (568)
....+.|+|.| |.+.++..-|+..+|-.-++
T Consensus 223 -----ke~~k~~~~~V-------RLPLm~lteLLnvVRPsGll 253 (620)
T KOG4350|consen 223 -----KEASKVLLELV-------RLPLMTLTELLNVVRPSGLL 253 (620)
T ss_pred -----hhhHHHHHHHH-------hhhhccHHHHHhccCcccCc
Confidence 12346677777 34555555565555554443
No 8
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=1.2e-15 Score=126.35 Aligned_cols=89 Identities=31% Similarity=0.519 Sum_probs=82.6
Q ss_pred cEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHHHHHH
Q 035818 8 DITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAE 86 (568)
Q Consensus 8 DV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll~AA~ 86 (568)
||++.|+|+.|++||.+|+++|+||++||. +..+.....|.+++++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 789999999999999999999999999999 4555567789999999 9999999999999999999999999999999
Q ss_pred HhccccccchhhHHHHHH
Q 035818 87 YLEMTEDYRDENLVARTE 104 (568)
Q Consensus 87 ~L~m~e~~~~~NL~~~ce 104 (568)
+|+|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999999 988874
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.58 E-value=1.3e-14 Score=154.15 Aligned_cols=180 Identities=17% Similarity=0.244 Sum_probs=147.1
Q ss_pred CCCcccEEEEEcC-----eEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh
Q 035818 3 SDVAGDITIVVDG-----ESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT 76 (568)
Q Consensus 3 s~~~sDV~i~V~g-----~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~ 76 (568)
+...+|+.+.|++ +.||+||++|+..|..|.+||+ ++.+....+|+++|+. |.+|..+++|+|+..+.+.++
T Consensus 111 n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsdev~~~~d 188 (521)
T KOG2075|consen 111 NELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDEVKLAAD 188 (521)
T ss_pred CcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcchhhhhHH
Confidence 3678999999984 4899999999999999999999 5666667899999999 999999999999999999999
Q ss_pred hHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhchHHHHHHHHHHHhhhhhhhc
Q 035818 77 NVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVS 156 (568)
Q Consensus 77 NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~lv~rci~~la~~a~~~~~~~ 156 (568)
|+..++.+|..+-++. |.+.|-+||...+ ...|.+..|-+|..+ .++-.+.++|++.|...+- +...
T Consensus 189 tvi~tl~~AkKY~Vpa------Ler~CVkflr~~l--~~~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~-~al~- 255 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPA------LERQCVKFLRKNL--MADNAFLELFQRAKL---FDEPSLISICLEVIDKSFE-DALT- 255 (521)
T ss_pred HHHHHHHHHHHhhhHH------HHHHHHHHHHHhc--CChHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHH-hhhC-
Confidence 9999999999999999 9999999999998 778888888787554 3555688999998865331 1100
Q ss_pred ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhh
Q 035818 157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQAS 218 (568)
Q Consensus 157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~ 218 (568)
+ =||-|+-.+ .+.|..|+..- ...+++-.+++|+.+|++--
T Consensus 256 ------------------~-EGf~did~~-~dt~~evl~r~-~l~~~e~~lfeA~lkw~~~e 296 (521)
T KOG2075|consen 256 ------------------P-EGFCDIDST-RDTYEEVLRRD-TLEAREFRLFEAALKWAEAE 296 (521)
T ss_pred ------------------c-cceeehhhH-HHHHHHHHhhc-ccchhHHHHHHHHHhhccCc
Confidence 1 144555444 88888888763 34567889999999998643
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.40 E-value=1.3e-12 Score=125.40 Aligned_cols=149 Identities=19% Similarity=0.294 Sum_probs=117.0
Q ss_pred CCcccEEEEEc---CeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhh--H
Q 035818 4 DVAGDITIVVD---GESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTN--V 78 (568)
Q Consensus 4 ~~~sDV~i~V~---g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~N--V 78 (568)
..+||+++.++ ++.+++||+|||+||++++ |.+..+.+..+..+.|.+ +++|-.+++|+||..|++..+. .
T Consensus 64 ~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~~t~iRWIYTDEidfk~dD~~L 139 (280)
T KOG4591|consen 64 EQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAFHTAIRWIYTDEIDFKEDDEFL 139 (280)
T ss_pred ccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHHHHhheeeeccccccccchHHH
Confidence 57899999998 4689999999999999885 443223334566788999 9999999999999999986655 5
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhh
Q 035818 79 ASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLV 155 (568)
Q Consensus 79 ~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~ 155 (568)
..|+..|..+|+.- |.++|++=+...+ +.+|||.+ +++||++. +...|.+-||.
T Consensus 140 ~el~e~An~FqLe~------Lke~C~k~l~a~l--~V~NCIk~-------Ye~AEe~n~~qL~n~~~eiIA~-------- 196 (280)
T KOG4591|consen 140 LELCELANRFQLEL------LKERCEKGLGALL--HVDNCIKF-------YEFAEELNARQLMNVAAEIIAG-------- 196 (280)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHhhHh--hHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHh--------
Confidence 78999999999999 9999999999988 99999988 56677664 33334333332
Q ss_pred cccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHH
Q 035818 156 SGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCA 196 (568)
Q Consensus 156 ~~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~a 196 (568)
..++.--+||+.+++.++-++|..
T Consensus 197 -----------------~W~dL~~a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 197 -----------------AWDDLGKADFAQMSAALLYKLIDG 220 (280)
T ss_pred -----------------hccccChHHHHhccHHHHHHHHcC
Confidence 112234579999999999999876
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.16 E-value=2.3e-10 Score=119.66 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=136.6
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcC-CccCCCCeeee--C--CCCCCHHHHHHHHHHHhCCcccCChhhH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVAD-AKDSNSSKLEL--H--NIPGGPQTFELAVKFCYGMNFEITTTNV 78 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~-~~es~~~~I~L--~--dipGG~eaFe~vl~F~Yt~~i~it~~NV 78 (568)
|.-+||+|.+-|.+.++||.-| ..|+||.+||.| ++|++...|+| + .|+ ..+|..++.-+|..+|+|..+.|
T Consensus 67 ~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id--~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 67 GENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNID--VVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred CCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCccc--HHHHHHHHhhhhhhheeccHHHH
Confidence 6679999999999999999988 889999999995 77887776655 3 466 99999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhch---HHHHHHHHHHHhhhhhhh
Q 035818 79 ASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGI---VNRCVEAVAVNACKEQLV 155 (568)
Q Consensus 79 ~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~l---v~rci~~la~~a~~~~~~ 155 (568)
..++.||.+|+++. |+++|.+-+.+.+ ++++++.. +..+..||+ ...|.+-+-.+-
T Consensus 144 ~gvlAaA~~lqldg------l~qrC~evMie~l--spkta~~y-------Yea~ckYgle~vk~kc~ewl~~nl------ 202 (488)
T KOG4682|consen 144 VGVLAAACLLQLDG------LIQRCGEVMIETL--SPKTACGY-------YEAACKYGLESVKKKCLEWLLNNL------ 202 (488)
T ss_pred HHHHHHHHHHHHhh------HHHHHHHHHHHhc--ChhhhhHh-------hhhhhhhhhHHHHHHHHHHHHHhh------
Confidence 99999999999999 9999999999999 99988876 566777774 344444332211
Q ss_pred cccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 035818 156 SGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIR-PDSITASLMHYAQ 216 (568)
Q Consensus 156 ~~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~-~e~I~~al~~Ya~ 216 (568)
.. .. -..-|-.++++++..|+.+-..-.+. |=.++..+..|.-
T Consensus 203 ------~~---------i~---~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 203 ------MT---------IQ---NVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred ------Hh---------hh---hHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 10 00 01256789999999999887776665 5577888877753
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.90 E-value=2e-09 Score=120.40 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=95.0
Q ss_pred ccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHh-CCcccC-----ChhhHH
Q 035818 7 GDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCY-GMNFEI-----TTTNVA 79 (568)
Q Consensus 7 sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Y-t~~i~i-----t~~NV~ 79 (568)
|||+.. +|+.|+|||++|++|+.||..||. -+.|+.. |...+.|-.+|.++.+++|+| +.+.++ ..+-+.
T Consensus 713 ~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 713 TVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred EEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 444444 788899999999999999999999 5666555 444445555999999999999 566554 334578
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHH
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAV 147 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~ 147 (568)
.++..|+.|-+++ |.+.||.-|.+.+ +.. +|-.++.+|-.|+ |-.+|++.|-.
T Consensus 790 ~il~iaDqlli~~------Lk~Ice~~ll~kl--~lk-------~~~~llefaamY~ak~L~~~C~dfic~ 845 (1267)
T KOG0783|consen 790 EILSIADQLLILE------LKSICEQSLLRKL--NLK-------TLPTLLEFAAMYHAKELYSRCIDFICH 845 (1267)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHhHh--ccc-------chHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8999999999999 9999999999988 744 4555566666654 66889997744
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.49 E-value=1.8e-07 Score=105.16 Aligned_cols=65 Identities=31% Similarity=0.523 Sum_probs=55.0
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcC---Ccc----------CCCCeeeeCCCCCCHHHHHHHHHHHhCCc
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVAD---AKD----------SNSSKLELHNIPGGPQTFELAVKFCYGMN 70 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~---~~e----------s~~~~I~L~dipGG~eaFe~vl~F~Yt~~ 70 (568)
+-+.|||+.||+..||+||+||+++|++||+||-. ..+ +....|..+++| |.+||.++.|+||+.
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999982 111 233456688999 999999999999984
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.47 E-value=0.00012 Score=76.19 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=77.4
Q ss_pred EEEEEcC------eEEEeehHhhcccCHHHHHhhcC-C-ccCCCCeeeeC-CCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 9 ITIVVDG------ESFLLHKFPLVSRSGKIRKMVAD-A-KDSNSSKLELH-NIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 9 V~i~V~g------~~F~~HK~vLas~S~yFr~lf~~-~-~es~~~~I~L~-dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. . ..+...+|+|. .-+ -.+|+-+++|+++....|+++||+
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCD--v~iF~WLm~yv~~~~p~l~~~Nvv 78 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCD--VHIFEWLMRYVKGEPPSLTPSNVV 78 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecC--hhHHHHHHHHhhcCCCcCCcCcEE
Confidence 5677743 48999999999999999999953 1 12233445554 223 459999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++--++||+|++ |++.|-.|+...+
T Consensus 79 sIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 79 SILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 9999999999999 9999999998766
No 15
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00083 Score=67.37 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=77.6
Q ss_pred EEEEEcCeEEEeehHhhcccCHHHHHhhc-CCc-cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCC--hhhHHHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAK-DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEIT--TTNVASLRCA 84 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~-es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it--~~NV~~Ll~A 84 (568)
|.+.|||..|.-+|.-|.-..+||++|+. +.. +.+...-.+-|=+ |.-|+++++|+=.|.+.|. ..++.+|+.=
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRS--PKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCC--hhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 56899999999999999999999999998 332 2222223344667 8999999999998888874 4567899999
Q ss_pred HHHhccccccchhhHHHHHHHHHHHHh
Q 035818 85 AEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 85 A~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
|+|+.+++ |++.|+.-+....
T Consensus 85 A~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 85 AEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHhhHHH------HHHHHHHHhhhcc
Confidence 99999999 9999998777653
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.19 E-value=0.00045 Score=59.41 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=61.1
Q ss_pred EEEEEcCeEEEeehHhhc-ccCHHHHHhhcCC----ccCCCCeeeeCCCCCCHHHHHHHHHHHhC-CcccCC-hhhHHHH
Q 035818 9 ITIVVDGESFLLHKFPLV-SRSGKIRKMVADA----KDSNSSKLELHNIPGGPQTFELAVKFCYG-MNFEIT-TTNVASL 81 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLa-s~S~yFr~lf~~~----~es~~~~I~L~dipGG~eaFe~vl~F~Yt-~~i~it-~~NV~~L 81 (568)
|+|.|||+.|..-+..|. ....+|.+|+.+. .......+-| |-+ |+.|+.+++|+-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 5567999999843 1233445444 567 9999999999999 677653 5678899
Q ss_pred HHHHHHhcccc
Q 035818 82 RCAAEYLEMTE 92 (568)
Q Consensus 82 l~AA~~L~m~e 92 (568)
+.-|+|+++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999998
No 17
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.01 E-value=0.0028 Score=55.84 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=60.6
Q ss_pred EEEE-EcCeEEEeehHhhcccCHHHHHhhcCCc--cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcc--------------
Q 035818 9 ITIV-VDGESFLLHKFPLVSRSGKIRKMVADAK--DSNSSKLELHNIPGGPQTFELAVKFCYGMNF-------------- 71 (568)
Q Consensus 9 V~i~-V~g~~F~~HK~vLas~S~yFr~lf~~~~--es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i-------------- 71 (568)
|++. -+|..|.+.+.+. ..|+-++.|+.+.. +.....|.|++|+ +.+++.+++||+.-+-
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 4554 4788999999966 79999999998422 2222579999999 9999999999984211
Q ss_pred -----cCChhhHHHHHHHHHHhcc
Q 035818 72 -----EITTTNVASLRCAAEYLEM 90 (568)
Q Consensus 72 -----~it~~NV~~Ll~AA~~L~m 90 (568)
.++.+.+.+|+.||+||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678999999999975
No 18
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.75 E-value=0.00064 Score=58.60 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=49.2
Q ss_pred hhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccCcccchHHHHHHHHHHHhhcCCC
Q 035818 179 IEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNE 258 (568)
Q Consensus 179 ~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLP~~ 258 (568)
.++|..||.+.+..+++.-.....+|..|+++++.|+++....+ ......|++.|
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r------------------~~~~~~Ll~~i------- 88 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENR------------------EEHLKELLSCI------- 88 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHH------------------TTTHHHHHCCC-------
T ss_pred chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHH------------------HHHHHHHHHhC-------
Confidence 46899999999999999877666688999999999998876532 13455666666
Q ss_pred CCCCCChHHHHHHH
Q 035818 259 KSSSIPQNFLFGML 272 (568)
Q Consensus 259 r~~~vs~~fL~~LL 272 (568)
|.+.+|..+|...+
T Consensus 89 R~~~l~~~~L~~~v 102 (103)
T PF07707_consen 89 RFPLLSPEELQNVV 102 (103)
T ss_dssp HHHCT-HHHHHHCC
T ss_pred CcccCCHHHHHHHH
Confidence 45677777776543
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.55 E-value=0.0023 Score=65.03 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=60.5
Q ss_pred CcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccC---CCCeeeeCCCCCCHHHHHHHHHHHhCCcccCC---hhhH
Q 035818 5 VAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDS---NSSKLELHNIPGGPQTFELAVKFCYGMNFEIT---TTNV 78 (568)
Q Consensus 5 ~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es---~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it---~~NV 78 (568)
+..||-|......|++||.+|++||++|+.+.+...+. ....|..-+|. .++|++++++.|++..-.. -.|+
T Consensus 129 ~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 129 VCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCchH
Confidence 46789999999999999999999999999998843332 33456667888 9999999999999876532 2445
Q ss_pred HHHHHHHH
Q 035818 79 ASLRCAAE 86 (568)
Q Consensus 79 ~~Ll~AA~ 86 (568)
..|-...+
T Consensus 207 diL~QL~e 214 (401)
T KOG2838|consen 207 DILEQLCE 214 (401)
T ss_pred HHHHHHHH
Confidence 44443333
No 20
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.03 E-value=0.029 Score=47.54 Aligned_cols=65 Identities=6% Similarity=0.193 Sum_probs=49.4
Q ss_pred hhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccCcccchHHHHHHHHHHHhhcCCCC
Q 035818 180 EDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNEK 259 (568)
Q Consensus 180 eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLP~~r 259 (568)
++|..|+.+.+..+|.+-......|..++++++.|+++.... . .....+++.| |
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~------------------~-~~~~~ll~~i-------r 88 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPER------------------R-RHLPELLSHV-------R 88 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHH------------------H-HHHHHHHHhC-------C
Confidence 689999999999999987776667899999999999766321 1 1345566666 6
Q ss_pred CCCCChHHHHH
Q 035818 260 SSSIPQNFLFG 270 (568)
Q Consensus 260 ~~~vs~~fL~~ 270 (568)
.+.+|..+|..
T Consensus 89 ~~~~~~~~l~~ 99 (101)
T smart00875 89 FPLLSPEYLLE 99 (101)
T ss_pred CCCCCHHHHHh
Confidence 67788887754
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.72 E-value=0.012 Score=60.05 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=40.3
Q ss_pred EEEeehHhhcccCHHHHHhhc-CCc---c------CCCCeeeeCC-CCCCHHHHH-HHHHHHhCCcccCC
Q 035818 17 SFLLHKFPLVSRSGKIRKMVA-DAK---D------SNSSKLELHN-IPGGPQTFE-LAVKFCYGMNFEIT 74 (568)
Q Consensus 17 ~F~~HK~vLas~S~yFr~lf~-~~~---e------s~~~~I~L~d-ipGG~eaFe-~vl~F~Yt~~i~it 74 (568)
++.+||.|.++||++||.++. ..+ | ....+|.+.. |= |.+|. .++.|+||..++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~--PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF--PKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc--chhhhhhhhhhheecccchh
Confidence 688999999999999999986 211 1 1345677664 22 45554 56899999988863
No 22
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.60 E-value=0.049 Score=47.48 Aligned_cols=73 Identities=26% Similarity=0.486 Sum_probs=60.3
Q ss_pred cCeEEEeehHhhcccCHHHHHhhcC---CccCCCCeeeeCCCCCCHHHHHHHHHHH-----hCCc------ccCChhhHH
Q 035818 14 DGESFLLHKFPLVSRSGKIRKMVAD---AKDSNSSKLELHNIPGGPQTFELAVKFC-----YGMN------FEITTTNVA 79 (568)
Q Consensus 14 ~g~~F~~HK~vLas~S~yFr~lf~~---~~es~~~~I~L~dipGG~eaFe~vl~F~-----Yt~~------i~it~~NV~ 79 (568)
+|++|-.-|- .|.-|+-+|+||++ ..+...++|.+++|| +-.++.+-.|+ |++. ++|.++-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 6778888776 67789999999994 345677889999999 99999999886 4433 567889999
Q ss_pred HHHHHHHHhc
Q 035818 80 SLRCAAEYLE 89 (568)
Q Consensus 80 ~Ll~AA~~L~ 89 (568)
+|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999986
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.057 Score=51.65 Aligned_cols=90 Identities=20% Similarity=0.322 Sum_probs=70.9
Q ss_pred EcCeEEEeehHhhcccCHHHHHhhcCC--ccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcc-------------------
Q 035818 13 VDGESFLLHKFPLVSRSGKIRKMVADA--KDSNSSKLELHNIPGGPQTFELAVKFCYGMNF------------------- 71 (568)
Q Consensus 13 V~g~~F~~HK~vLas~S~yFr~lf~~~--~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i------------------- 71 (568)
-+|+.|.+-..+ |.+|.-++.++.+. .... ..|.|++|. +.+|..|+.|||--+-
T Consensus 12 sDG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~-~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~ 87 (162)
T KOG1724|consen 12 SDGEIFEVEEEV-ARQSQTISAHMIEDGCADEN-DPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPE 87 (162)
T ss_pred cCCceeehhHHH-HHHhHHHHHHHHHcCCCccC-CccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccH
Confidence 378899888775 47888888888732 2222 478899999 9999999999996221
Q ss_pred ------cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhc
Q 035818 72 ------EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVV 112 (568)
Q Consensus 72 ------~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~ 112 (568)
.+...++.+|.-||.||+++. |+..|++.+...+.
T Consensus 88 WD~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mik 128 (162)
T KOG1724|consen 88 WDAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIK 128 (162)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHc
Confidence 123357899999999999999 99999999988873
No 24
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.38 E-value=0.078 Score=42.37 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=44.3
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhC
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYG 68 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt 68 (568)
|++.- +|+.|.+.+.+. ..|+.++.|+.+..+... .|.|++++ +.+++.+++||+.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHHh
Confidence 44443 788999999865 699999999985444333 79999999 9999999999983
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.25 E-value=0.056 Score=57.51 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=60.1
Q ss_pred eEEEeehHhhcccCHHHHHhhc-CCccCC----CCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHHHHHHHhcc
Q 035818 16 ESFLLHKFPLVSRSGKIRKMVA-DAKDSN----SSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEM 90 (568)
Q Consensus 16 ~~F~~HK~vLas~S~yFr~lf~-~~~es~----~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll~AA~~L~m 90 (568)
..+|+|..++ +|+.||+.||. .+.|+. .....|+.+. ....+.+++|.|+.+-+|.++-...++-.|+.|.+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 3599999988 78999999999 456632 2234456666 78999999999999999999999999999999877
Q ss_pred cc
Q 035818 91 TE 92 (568)
Q Consensus 91 ~e 92 (568)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 75
No 26
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.34 E-value=0.43 Score=51.77 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=62.6
Q ss_pred EEEEEcCeEEEeehHhhcccC--HHHHHhhcC-Cc-cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHHH-
Q 035818 9 ITIVVDGESFLLHKFPLVSRS--GKIRKMVAD-AK-DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRC- 83 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S--~yFr~lf~~-~~-es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll~- 83 (568)
|.+.|||+.|.--+.-|+.-. .+|.+|+++ +. .....-..+-|=+ |+.|..+++|+-|+++.+..--...++.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRD--PdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRD--PDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCC--chHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 558999999999999887766 699999973 21 1122222344566 9999999999999999996555555665
Q ss_pred HHHHhcccc
Q 035818 84 AAEYLEMTE 92 (568)
Q Consensus 84 AA~~L~m~e 92 (568)
=|.||+++.
T Consensus 91 EA~fYGl~~ 99 (465)
T KOG2714|consen 91 EAMFYGLTP 99 (465)
T ss_pred hhhhcCcHH
Confidence 899999999
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=1.2 Score=41.07 Aligned_cols=93 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred EEE-EEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccC--------------
Q 035818 9 ITI-VVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEI-------------- 73 (568)
Q Consensus 9 V~i-~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~i-------------- 73 (568)
|.+ ..+|+.|.+.+. .|-+|-.++.|+.++.+.+. .|.++.+. +.+|..+++||-..+-.+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 444 467889999887 57899999999986655443 35667888 999999999997432222
Q ss_pred -----------ChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 74 -----------TTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 74 -----------t~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+...+.++.-||.||++.. |+..|++-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 1123567888999999999 9999999888877
No 28
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.61 E-value=0.2 Score=53.46 Aligned_cols=85 Identities=21% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCcccEEEEE-cCeEEEeehHhhcccCHHHH-HhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 4 DVAGDITIVV-DGESFLLHKFPLVSRSGKIR-KMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 4 ~~~sDV~i~V-~g~~F~~HK~vLas~S~yFr-~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
|...|+++.+ +|..|.+||+.|+++|.+|. ++..-.. ...+|+=+.+- +.+|+.+++|.|-..-.+-+..-.+|
T Consensus 147 ~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~--~~~f~~flk~lyl~~na~~~~qynal 222 (516)
T KOG0511|consen 147 GCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVI--LSAFSPFLKQLYLNTNAEWKDQYNAL 222 (516)
T ss_pred ccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhh--HhhhhHHHHHHHHhhhhhhhhHHHHH
Confidence 3456888766 67899999999999998764 4433211 12344333444 79999999999975322333334556
Q ss_pred HHHHHHhcccc
Q 035818 82 RCAAEYLEMTE 92 (568)
Q Consensus 82 l~AA~~L~m~e 92 (568)
+.....++...
T Consensus 223 lsi~~kF~~e~ 233 (516)
T KOG0511|consen 223 LSIEVKFSKEK 233 (516)
T ss_pred HhhhhhccHHH
Confidence 66666665544
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.95 E-value=0.26 Score=50.91 Aligned_cols=89 Identities=19% Similarity=0.099 Sum_probs=68.8
Q ss_pred CeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH---HHHHHHHHhcc
Q 035818 15 GESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA---SLRCAAEYLEM 90 (568)
Q Consensus 15 g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~---~Ll~AA~~L~m 90 (568)
+..+..|+.+++++++.|+.|+. +..+.....+.+.+.. ++.|+.+..|.|...-..+..++. .++++|..++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 45699999999999999999998 4333344455677777 999999999999865333444443 77778887777
Q ss_pred ccccchhhHHHHHHHHHHHHh
Q 035818 91 TEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 91 ~e~~~~~NL~~~ce~fL~~~l 111 (568)
.. |...|...+.+.+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 77 9999999998876
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=86.92 E-value=2.3 Score=42.71 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=71.7
Q ss_pred CcccEEEEEcCeEEEeehHhhcccCH--HHHHhhcC---CccCCCCeeeeCCCCCCHHHHHHHHHHHhCCccc-CChhhH
Q 035818 5 VAGDITIVVDGESFLLHKFPLVSRSG--KIRKMVAD---AKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFE-ITTTNV 78 (568)
Q Consensus 5 ~~sDV~i~V~g~~F~~HK~vLas~S~--yFr~lf~~---~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~-it~~NV 78 (568)
.-+=|.+.+||+.|.--..-|.-+-+ .+.+||.+ +.+.+..--.|-|-+ |.-|+-++.|+-.|.+. .+.-++
T Consensus 7 ~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRs--p~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 7 LSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRS--PKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccC--chhhHHHHHHHhcCceeecCCccH
Confidence 34557889999999999888888854 68899983 112222223444666 89999999999999876 556689
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHH
Q 035818 79 ASLRCAAEYLEMTEDYRDENLVARTEV 105 (568)
Q Consensus 79 ~~Ll~AA~~L~m~e~~~~~NL~~~ce~ 105 (568)
..++..|.|||+-. |+...+.
T Consensus 85 lgvLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHh------HHhHHhh
Confidence 99999999999998 8877776
No 31
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=80.78 E-value=2.3 Score=35.54 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=28.7
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++...+..|+.||.||+++. |...|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 346778999999999999999 9999999998877
No 32
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.69 E-value=5.8 Score=38.26 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=72.4
Q ss_pred EEEEEcCeEEEeehHhhcccC-HHHHHhhcCCcc----CCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRS-GKIRKMVADAKD----SNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRC 83 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S-~yFr~lf~~~~e----s~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll~ 83 (568)
|.+.|||..|.--|.-|.--+ .|+.++..+..+ .+.+---|-|-+ |.-|.-+++|+-.|++.++.-.-..++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRD--P~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRD--PFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccC--cchHHHHHHHHhcchhhhhhhhhhccch
Confidence 667899999999999998777 677777763322 222223455556 8999999999999999999866677899
Q ss_pred HHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 84 AAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 84 AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
-|+|+.++. |+....+-+.+..
T Consensus 101 EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 101 EAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred hhhccCChH------HHHHHHHHHHHHh
Confidence 999999998 8877766555543
No 33
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=70.29 E-value=18 Score=38.13 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=62.0
Q ss_pred cEEEEEcCeEEEeehHhhcccCH-HHHHhhc-CCc---cCCCCeeee-CCCCCCHHHHHHHHHHHhCCcccCC-hhhHHH
Q 035818 8 DITIVVDGESFLLHKFPLVSRSG-KIRKMVA-DAK---DSNSSKLEL-HNIPGGPQTFELAVKFCYGMNFEIT-TTNVAS 80 (568)
Q Consensus 8 DV~i~V~g~~F~~HK~vLas~S~-yFr~lf~-~~~---es~~~~I~L-~dipGG~eaFe~vl~F~Yt~~i~it-~~NV~~ 80 (568)
-++..|++..|..-+++|.+.=. -+-+||. +.. -....+.+. .++. ...|.++++|--+|.|.-. .-.|.+
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP~~vSvpE 174 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCPSSVSVSE 174 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCCCCCchHH
Confidence 47788999999999998877643 3456665 211 112223333 3566 9999999999889887743 356899
Q ss_pred HHHHHHHhccccccc
Q 035818 81 LRCAAEYLEMTEDYR 95 (568)
Q Consensus 81 Ll~AA~~L~m~e~~~ 95 (568)
|+.|.+||-++-++.
T Consensus 175 LrEACDYLlipF~a~ 189 (438)
T KOG3840|consen 175 LREACDYLLVPFNAQ 189 (438)
T ss_pred HHhhcceEEeecccc
Confidence 999999999988654
No 34
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=1.8e+02 Score=32.58 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHhhhhcCCC----------------CCChHHHHHHHHhcCCCCc----c-cchh---------HHHHH
Q 035818 341 GSLLKVGRLIDAYLAEIAPDP----------------YLSLQKFIAMLEILPDYSR----V-IDDG---------LYRAI 390 (568)
Q Consensus 341 ~~~~~VakLvD~yLaEiA~D~----------------~L~~~kF~~Lae~lP~~aR----~-~~Dg---------lYrAI 390 (568)
.....|.+.+-.+|.+++.++ +|++-.|..|++-.-++.+ . +.|. +|||+
T Consensus 343 ~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRav 422 (523)
T KOG2016|consen 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAV 422 (523)
T ss_pred hhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHH
Confidence 345689999999999999884 3445555567776655544 2 3333 79999
Q ss_pred HHHHHhCCCCCH
Q 035818 391 DIYLKAHPMLTE 402 (568)
Q Consensus 391 DiyLk~Hp~ls~ 402 (568)
|-||+.|-....
T Consensus 423 drfl~~~gk~pG 434 (523)
T KOG2016|consen 423 DRFLKEKGKYPG 434 (523)
T ss_pred HHHHHHhcCCCC
Confidence 999999876554
No 35
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=67.53 E-value=7 Score=25.41 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035818 492 EISRMRVRLSELEKEQMFM 510 (568)
Q Consensus 492 el~~m~~rv~eLe~~~~~m 510 (568)
||++.|.|+++||++...-
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6899999999999986543
No 36
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=60.32 E-value=13 Score=29.59 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=30.1
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 481 SLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 481 ~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
.++.|.+.||..+..+..|+.+||.|+...|+..
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999999998865
No 37
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=57.55 E-value=6.8 Score=34.21 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.5
Q ss_pred cCCCCcccchhHHHHHHHHHHhCCCCCHHHHhhhccccccccC
Q 035818 375 LPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKL 417 (568)
Q Consensus 375 lP~~aR~~~DglYrAIDiyLk~Hp~ls~~Er~~lC~~~dc~KL 417 (568)
+|++.......+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4455556788999999999999987775 78888887766553
No 38
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.32 E-value=1.6e+02 Score=34.08 Aligned_cols=164 Identities=21% Similarity=0.182 Sum_probs=96.5
Q ss_pred CCCChhhHHHHHHHHHHhhhhcCCCCCChHHHHHHHHhcCCCCcccc--hhHHHHHHHHHHhCCCCCHHHHhhhcccccc
Q 035818 337 SPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVID--DGLYRAIDIYLKAHPMLTEHECKKLCKFIDC 414 (568)
Q Consensus 337 ~~~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~--DglYrAIDiyLk~Hp~ls~~Er~~lC~~~dc 414 (568)
+|.+....|+|.-++.-|. -||..|+++.=..+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-.|.-
T Consensus 298 tp~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~ 375 (652)
T COG2433 298 TPAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWK 375 (652)
T ss_pred CCChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 4566788888888888774 69999999998888888888888877 8999999999987787777777532111111
Q ss_pred ccCCHHHhHHHHhCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCCCccCCCC---CCCCCCCC-CcchhhhHHhhHHHH
Q 035818 415 QKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSG---VPSAAMSP-RDNYASLRRENRELK 490 (568)
Q Consensus 415 ~KLS~eac~haaqNerlPlr~vvqvL~~eQ~~lr~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~ren~~Lk 490 (568)
+- -.+-.+.- .=.||.-++-..--+ -+-+ .....+..... .....+.. ......+.+||+.|+
T Consensus 376 d~--~rika~VI--rG~~l~eal~~~~e~-~~p~--------e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~ 442 (652)
T COG2433 376 DV--ERIKALVI--RGYPLAEALSKVKEE-ERPR--------EKEGTEEEERREITVYEKRIKKLEETVERLEEENSELK 442 (652)
T ss_pred hH--HHHHHHee--cCCcHHHHHHHHHhh-hccc--------cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00000100 012222222211100 0000 00000000000 00000011 122346788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 491 LEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 491 ~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
.+++.|+..+++||.+|..++.++.
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887764
No 39
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.84 E-value=32 Score=36.50 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=26.1
Q ss_pred cchhhhHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 035818 477 DNYASLRRENRELKLEISRMRVRLSELEKEQM 508 (568)
Q Consensus 477 ~~~~~~~ren~~Lk~el~~m~~rv~eLe~~~~ 508 (568)
+.-..++.||..||.|.+.++.+|+.||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999987643
No 40
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.75 E-value=27 Score=29.56 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 491 LEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 491 ~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
.||+.||..|.+||..+..||+..+
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999998765
No 41
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=38.18 E-value=15 Score=27.84 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 035818 494 SRMRVRLSELEKEQMFMKQG 513 (568)
Q Consensus 494 ~~m~~rv~eLe~~~~~mk~~ 513 (568)
+.+|.||.|||.|...+|+-
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 45788999999998877763
No 42
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.52 E-value=31 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=25.9
Q ss_pred HhcC--CCCcccchhHHHHHHHHHHhCCCCCHHHHh
Q 035818 373 EILP--DYSRVIDDGLYRAIDIYLKAHPMLTEHECK 406 (568)
Q Consensus 373 e~lP--~~aR~~~DglYrAIDiyLk~Hp~ls~~Er~ 406 (568)
+-+| +..+..-+|=|+||.-|||.||+=-|.++.
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 4455 555557999999999999999975555554
No 43
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.09 E-value=63 Score=30.36 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=29.6
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 479 YASLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
..+++.|++.|-.+++.|+.||.+||.-++....-+
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456788889999999999999999998877766554
No 44
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.35 E-value=34 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhCCCCCH
Q 035818 384 DGLYRAIDIYLKAHPMLTE 402 (568)
Q Consensus 384 DglYrAIDiyLk~Hp~ls~ 402 (568)
-.||.|+.-||+.||+-+.
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3699999999999998654
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.16 E-value=54 Score=24.73 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=11.2
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHH
Q 035818 479 YASLRRENRELKLEISRMRVRLSEL 503 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~rv~eL 503 (568)
|.++..+++.|+.|-++++..|..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 46
>PRK14127 cell division protein GpsB; Provisional
Probab=30.58 E-value=67 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=25.9
Q ss_pred chhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 035818 478 NYASLRRENRELKLEISRMRVRLSELEKEQMFM 510 (568)
Q Consensus 478 ~~~~~~ren~~Lk~el~~m~~rv~eLe~~~~~m 510 (568)
.|..+.+||..|+.++.+++.++.+++.....-
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 466677888888888888888888888766543
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.21 E-value=75 Score=30.53 Aligned_cols=32 Identities=38% Similarity=0.442 Sum_probs=20.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 035818 482 LRRENRELKLEISRMRVRLSELEKEQMFMKQG 513 (568)
Q Consensus 482 ~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~ 513 (568)
+..||+.|+.++..++.++.+||++...+++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777665555443
No 48
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.99 E-value=1.9e+02 Score=29.26 Aligned_cols=81 Identities=11% Similarity=0.200 Sum_probs=54.2
Q ss_pred EEEEEcCeEEEeehHhhcc-cCHHHHHhhcCCcc---CCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCCh--hhHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVS-RSGKIRKMVADAKD---SNSSKLELHNIPGGPQTFELAVKFCYGMNFEITT--TNVASLR 82 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas-~S~yFr~lf~~~~e---s~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~--~NV~~Ll 82 (568)
|.+.|||..|.--..-|.. .-..+.+||++... .......| |=+ -..|.-+++|+=+....+.. .++..|.
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRD--G~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRD--GFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCC--cchHHHHHHHhcccccccchhhhhHHHHH
Confidence 5688999877644332322 24567788874111 11112222 223 45899999999997766766 7899999
Q ss_pred HHHHHhcccc
Q 035818 83 CAAEYLEMTE 92 (568)
Q Consensus 83 ~AA~~L~m~e 92 (568)
.-|+|++++.
T Consensus 88 rEA~f~~l~~ 97 (221)
T KOG2723|consen 88 REAEFFQLEA 97 (221)
T ss_pred HHHHHHcccc
Confidence 9999999997
No 49
>PHA01750 hypothetical protein
Probab=29.37 E-value=1e+02 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=26.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 482 LRRENRELKLEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 482 ~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
+..|...|+.|++..+.|.-+||++....|+.+.
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3567778888888888888888888777776553
No 50
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.35 E-value=2.5e+02 Score=25.17 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCCCccCCCCCCCCCCCCCcchhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035818 433 VQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQ 512 (568)
Q Consensus 433 lr~vvqvL~~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~ 512 (568)
+|+.+|=|+.-|-.|-..+ ..+..+++.+..+.++++.++.+++.++..+|+
T Consensus 64 aQl~ieYLl~~q~~L~~~~----------------------------~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQL----------------------------EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999988888775422 234566777778888888888888888888877
Q ss_pred cc
Q 035818 513 GM 514 (568)
Q Consensus 513 ~~ 514 (568)
+.
T Consensus 116 E~ 117 (118)
T PF13815_consen 116 ES 117 (118)
T ss_pred hc
Confidence 64
No 51
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.02 E-value=1.3e+02 Score=25.11 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=27.6
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 479 YASLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
..++..+|-+||.+++.|+..+.++.+......+.+
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788888899999999988888887766555444
No 52
>PHA03098 kelch-like protein; Provisional
Probab=26.61 E-value=4.1e+02 Score=29.66 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=30.7
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.|+.+|...++..|+.+...+ |.+.|.+|+.+..
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~------L~~~~~~~i~~nf 137 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKK------LYSAAYNYIRNNI 137 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHH------HHHHHHHHHHHHH
Confidence 478999999999999999988 9999999998765
No 53
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=26.11 E-value=58 Score=26.19 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHhCCCCCHHHHhhh
Q 035818 383 DDGLYRAIDIYLKAHPMLTEHECKKL 408 (568)
Q Consensus 383 ~DglYrAIDiyLk~Hp~ls~~Er~~l 408 (568)
.|+.|.| -+.+|.+||++|-..+
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHHH
Confidence 3999998 5889999999986543
No 54
>PRK15322 invasion protein OrgB; Provisional
Probab=25.95 E-value=3.3e+02 Score=27.24 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhhhcCCC-
Q 035818 283 ACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDP- 361 (568)
Q Consensus 283 ~Cr~~LE~rIg~qLd~~~~~~ydvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~yLaEiA~D~- 361 (568)
.|+..+|.-+-..|.. .+-|+|...++++.|+..-.....+-.. .- +..-+.-+.-+-.||.|..+++
T Consensus 72 ~l~~~ie~~~r~lls~---~Ld~pd~LL~~le~Wl~~l~~~~~pL~l------~l--P~~ak~~~~~L~~~l~e~w~~~~ 140 (210)
T PRK15322 72 KWMEKIQIYARELFSA---AVDHPETLLTVLDEWLRDFDKPEGQLFL------TL--PVNAKKDHQKLMVLLMENWPGTF 140 (210)
T ss_pred HHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCccccCceeE------ec--ChhhhhhHHHHHHHHHHhcCCCe
Confidence 4455555544433332 3457899999999999865542110000 01 2334555666777888866644
Q ss_pred -------------------CCChHHHHHHHHh--------cCCCCcccchhHHHHHHHHHHhC
Q 035818 362 -------------------YLSLQKFIAMLEI--------LPDYSRVIDDGLYRAIDIYLKAH 397 (568)
Q Consensus 362 -------------------~L~~~kF~~Lae~--------lP~~aR~~~DglYrAIDiyLk~H 397 (568)
..+|..|++.|+. +|.-+|...||=-.|.=-|||.|
T Consensus 141 ~i~yhd~~rFV~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~ 203 (210)
T PRK15322 141 NLKYHQEQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTK 203 (210)
T ss_pred EEEEcCCCceEEEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHh
Confidence 4689999999986 33344444444444433355544
No 55
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.35 E-value=51 Score=34.50 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=29.2
Q ss_pred chhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 478 NYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 478 ~~~~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
.|.++..|.+.|-.+=+++|.++.+||||..-||+-|.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677788899999999999999774
No 56
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.88 E-value=49 Score=36.27 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Q 035818 73 ITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEV 110 (568)
Q Consensus 73 it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~ 110 (568)
+.-+||..++-||.++++++ |...|..|+...
T Consensus 145 L~~~NvCmifdaA~ly~l~~------Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTD------LTDYCMMFMDRN 176 (620)
T ss_pred HcccceeeeeeHHHHhcchH------HHHHHHHHHhcC
Confidence 45689999999999999999 999999999754
No 57
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.94 E-value=1e+02 Score=31.57 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=28.3
Q ss_pred chhhhHHhhHHHHHHHHHHHHHHH---HHHHHHhhhhhcc
Q 035818 478 NYASLRRENRELKLEISRMRVRLS---ELEKEQMFMKQGM 514 (568)
Q Consensus 478 ~~~~~~ren~~Lk~el~~m~~rv~---eLe~~~~~mk~~~ 514 (568)
++..+..||++||.|++.++.++. +|++|-..+|+.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355788999999999999998888 4456666666654
No 58
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.21 E-value=56 Score=27.49 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHhCCC
Q 035818 384 DGLYRAIDIYLKAHPM 399 (568)
Q Consensus 384 DglYrAIDiyLk~Hp~ 399 (568)
=.||-||+-||.-|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999975
No 59
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.98 E-value=73 Score=33.98 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 490 KLEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 490 k~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
|.||+.+..|+.||||+...+++++.
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888775
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.60 E-value=1.3e+02 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=10.0
Q ss_pred hhhhHHhhHHHHHHHHHHHHH
Q 035818 479 YASLRRENRELKLEISRMRVR 499 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~r 499 (568)
+.++.+||+.|+.++..++.+
T Consensus 21 ~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 21 YDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555444443
No 61
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.90 E-value=1.1e+02 Score=27.33 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=24.4
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 035818 479 YASLRRENRELKLEISRMRVRLSELEK 505 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~rv~eLe~ 505 (568)
+..+..||..|+.|-+.+|.++.++++
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999999987
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.87 E-value=1.4e+02 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=14.9
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHH
Q 035818 481 SLRRENRELKLEISRMRVRLSEL 503 (568)
Q Consensus 481 ~~~ren~~Lk~el~~m~~rv~eL 503 (568)
++++||++++.++++|...|.+|
T Consensus 18 tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666666444
No 63
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.43 E-value=87 Score=28.12 Aligned_cols=29 Identities=48% Similarity=0.638 Sum_probs=24.6
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHH--HHHHH
Q 035818 479 YASLRRENRELKLEISRMRVRLSE--LEKEQ 507 (568)
Q Consensus 479 ~~~~~ren~~Lk~el~~m~~rv~e--Le~~~ 507 (568)
..++..||-.|++|-+++|.|+.+ +|+.-
T Consensus 31 l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 31 LGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 346788999999999999999999 77553
No 64
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=21.23 E-value=89 Score=26.22 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=47.2
Q ss_pred HHHHHHhhhhcCCC---CCChHHHHHHHHhcCCCCcccchhHHHHHHHHHHhCCCCCHHHHhhhccccccccCCHHH
Q 035818 348 RLIDAYLAEIAPDP---YLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEA 421 (568)
Q Consensus 348 kLvD~yLaEiA~D~---~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~Hp~ls~~Er~~lC~~~dc~KLS~ea 421 (568)
+.|.....+|..++ +|++..+..+-.. ++-.-.+.|.+|.||-.|++.+|.-.+..-.+|.+.+...-||++-
T Consensus 22 ~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~ 97 (103)
T PF07707_consen 22 RFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEE 97 (103)
T ss_dssp HHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHH
T ss_pred HHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHH
Confidence 33334444555443 6888888877774 5555567899999999999998865555556666777666666653
Done!