Query 035818
Match_columns 568
No_of_seqs 394 out of 1646
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 100.0 2.2E-30 7.4E-35 259.7 11.2 222 3-290 28-256 (256)
2 3i3n_A Kelch-like protein 11; 100.0 1E-29 3.6E-34 258.0 14.2 228 3-296 29-269 (279)
3 3htm_A Speckle-type POZ protei 99.9 4.6E-22 1.6E-26 186.5 13.6 127 4-147 32-162 (172)
4 2vkp_A BTB/POZ domain-containi 99.9 1.3E-21 4.6E-26 170.5 11.0 100 3-111 5-109 (109)
5 2if5_A Zinc finger and BTB dom 99.8 2.2E-21 7.6E-26 172.3 10.7 98 3-108 22-120 (120)
6 4eoz_A Speckle-type POZ protei 99.8 5.9E-22 2E-26 180.8 6.3 116 4-136 23-139 (145)
7 1r29_A B-cell lymphoma 6 prote 99.8 5.8E-21 2E-25 171.4 11.0 98 3-109 26-125 (127)
8 1buo_A POZ domain, protein (pr 99.8 1.1E-20 3.7E-25 168.6 11.1 96 3-110 25-120 (121)
9 3b84_A Zinc finger and BTB dom 99.8 4.1E-21 1.4E-25 171.0 8.4 97 3-110 21-117 (119)
10 2vpk_A Myoneurin; transcriptio 99.8 9.1E-21 3.1E-25 167.5 10.3 95 3-108 19-115 (116)
11 2ppi_A Gigaxonin; BTB domain, 99.8 7.4E-21 2.5E-25 175.3 9.3 98 3-108 44-144 (144)
12 2z8h_A Transcription regulator 99.8 6.4E-21 2.2E-25 174.0 7.4 98 4-111 34-133 (138)
13 2yy9_A Zinc finger and BTB dom 99.8 6.9E-21 2.4E-25 173.4 7.2 98 3-111 22-119 (135)
14 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.5E-20 5E-25 167.4 8.7 94 3-108 24-117 (119)
15 3hqi_A Speckle-type POZ protei 99.8 3.9E-20 1.3E-24 190.1 12.9 129 3-148 171-303 (312)
16 3ga1_A Nucleus accumbens-assoc 99.8 8E-21 2.7E-25 171.3 6.2 98 3-111 30-128 (129)
17 3ohu_A Transcription regulator 99.8 8.6E-21 3E-25 169.8 4.7 94 4-107 30-125 (125)
18 3m5b_A Zinc finger and BTB dom 99.8 3.4E-20 1.2E-24 165.8 7.3 91 3-109 27-117 (119)
19 2ihc_A Transcription regulator 99.8 1.7E-20 5.7E-25 168.2 4.2 96 3-108 26-123 (124)
20 3fkc_A Transcriptional regulat 99.7 2.6E-18 8.8E-23 152.5 9.8 83 4-92 29-112 (116)
21 2ast_A S-phase kinase-associat 99.4 7.1E-13 2.4E-17 124.2 10.3 94 9-111 3-126 (159)
22 4ajy_C Transcription elongatio 99.2 6.3E-11 2.2E-15 102.0 9.3 78 9-89 4-96 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 2.3E-10 7.9E-15 105.1 9.6 91 9-111 4-121 (141)
24 2p1m_A SKP1-like protein 1A; F 98.9 3.1E-10 1.1E-14 106.4 1.8 102 9-121 6-136 (160)
25 3v7d_A Suppressor of kinetocho 98.4 8.4E-07 2.9E-11 83.8 10.4 95 8-111 8-133 (169)
26 2fnj_C Transcription elongatio 98.4 4.3E-07 1.5E-11 77.9 7.3 79 9-90 3-96 (96)
27 1hv2_A Elongin C, ELC1; protei 98.4 8.3E-07 2.8E-11 76.6 9.0 79 9-90 6-99 (99)
28 3drz_A BTB/POZ domain-containi 97.9 6E-05 2.1E-09 65.6 10.6 93 8-109 7-106 (107)
29 1vcb_B Protein (elongin C); tu 97.9 1.6E-05 5.6E-10 70.0 7.0 79 9-90 19-112 (112)
30 2eqx_A Kelch repeat and BTB do 97.2 0.00072 2.5E-08 58.3 7.2 53 179-252 46-98 (105)
31 3drx_A BTB/POZ domain-containi 96.6 0.005 1.7E-07 59.5 8.3 93 9-110 14-113 (202)
32 3kvt_A Potassium channel prote 95.6 0.017 5.8E-07 50.9 5.8 81 9-92 7-91 (115)
33 1t1d_A Protein (potassium chan 94.6 0.065 2.2E-06 45.9 6.4 81 9-92 3-88 (100)
34 1s1g_A Potassium voltage-gated 93.9 0.084 2.9E-06 47.0 6.0 79 8-92 14-98 (124)
35 1nn7_A Potassium channel KV4.2 92.5 0.053 1.8E-06 46.8 2.4 78 9-92 2-85 (105)
36 2nz0_B Potassium voltage-gated 91.2 0.36 1.2E-05 43.8 6.5 79 8-92 36-120 (140)
37 2yy0_A C-MYC-binding protein; 72.7 3.8 0.00013 30.9 4.0 30 485-514 20-49 (53)
38 2r9r_B Paddle chimera voltage 69.3 6.8 0.00023 42.6 6.7 81 9-92 54-139 (514)
39 1deb_A APC protein, adenomatou 68.7 7.6 0.00026 28.8 4.6 34 481-514 14-47 (54)
40 2yy0_A C-MYC-binding protein; 55.1 15 0.00053 27.5 4.4 32 477-508 19-50 (53)
41 1pd7_B MAD1; PAH2, SIN3, eukar 49.4 5.8 0.0002 25.4 1.0 17 76-92 3-19 (26)
42 1vjh_A BET V I allergen family 49.3 12 0.0004 32.6 3.4 32 357-399 91-122 (122)
43 1dip_A Delta-sleep-inducing pe 39.3 23 0.00078 28.4 3.2 34 481-514 12-45 (78)
44 3htm_A Speckle-type POZ protei 38.0 38 0.0013 30.1 5.1 34 72-111 131-164 (172)
45 3vmx_A Voltage-gated hydrogen 35.1 48 0.0017 24.4 4.1 31 485-515 5-35 (48)
46 3vp9_A General transcriptional 30.3 36 0.0012 28.5 3.2 25 491-515 50-74 (92)
47 3b0b_C CENP-X, centromere prot 27.2 49 0.0017 27.0 3.4 42 301-356 6-47 (81)
48 1a92_A Delta antigen; leucine 25.3 98 0.0033 22.8 4.3 29 478-506 8-36 (50)
49 1ci6_A Transcription factor AT 25.2 89 0.0031 24.0 4.5 34 481-514 27-60 (63)
50 4dra_E Centromere protein X; D 24.4 40 0.0014 27.7 2.4 43 300-356 9-51 (84)
51 3hqi_A Speckle-type POZ protei 23.6 97 0.0033 30.4 5.7 34 72-111 271-304 (312)
52 3fs7_A Parvalbumin, thymic; ca 21.7 2.8E+02 0.0096 21.8 7.3 59 359-421 21-82 (109)
53 3i3n_A Kelch-like protein 11; 21.4 94 0.0032 30.1 5.0 34 72-111 138-171 (279)
54 3hve_A Gigaxonin; ubiquitin, c 20.6 1E+02 0.0034 29.4 4.9 34 72-111 130-163 (256)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.96 E-value=2.2e-30 Score=259.69 Aligned_cols=222 Identities=14% Similarity=0.154 Sum_probs=168.3
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCc--cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAK--DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~--es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
++.+|||+|.|||+.|++||.+|+++|+||++||+ ++. ++...+|+|++++ +++|+.+++|+|||++.++.+|+.
T Consensus 28 ~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~~v~ 105 (256)
T 3hve_A 28 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQ 105 (256)
T ss_dssp --CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-CCHH
T ss_pred cCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHhHHH
Confidence 47899999999999999999999999999999998 454 5677899999999 999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhhc
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLVS 156 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~~ 156 (568)
.++.||++|+|++ |+..|++||.+.+ +++||+.++ .+|+.++ +.+.|.+.|..+...
T Consensus 106 ~ll~~A~~l~i~~------l~~~c~~~L~~~l--~~~n~~~i~-------~~A~~~~~~~L~~~~~~~i~~~f~~----- 165 (256)
T 3hve_A 106 DVVQAADLLLLTD------LKTLCCEFLEGCI--AAENCIGIR-------DFALHYCLHHVHYLATEYLETHFRD----- 165 (256)
T ss_dssp HHHHHHHHHTCHH------HHHHHHHHHHHTC--CSSTTHHHH-------HHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHChHH------HHHHHHHHHHhhC--CHhhHHHHH-------HHHHHcCcHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999 9999999999999 888998884 5566665 556666666543311
Q ss_pred ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccC
Q 035818 157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSN 236 (568)
Q Consensus 157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~ 236 (568)
. +-.++|..|+.+.+..++++......+|+.|+++++.|+++....+
T Consensus 166 ----------------v---~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R-------------- 212 (256)
T 3hve_A 166 ----------------V---SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIR-------------- 212 (256)
T ss_dssp ----------------H---TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCS--------------
T ss_pred ----------------H---hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHH--------------
Confidence 0 2357899999999999999877776679999999999987765432
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhhcCC-HHhHHHHHH
Q 035818 237 RTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDAS-IACKLELER 290 (568)
Q Consensus 237 ~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l~as-~~Cr~~LE~ 290 (568)
..+...|++.| |++.+|..||...+....++..+ +.|+..|++
T Consensus 213 ----~~~~~~ll~~V-------Rf~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 213 ----KVHMKDVMSAL-------WVSGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp ----TTTHHHHHHHH-------HHHTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred ----HHHHHHHHHhC-------CCCCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 24567899999 45778888999999999999988 689998875
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.96 E-value=1e-29 Score=258.00 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=186.0
Q ss_pred CCCcccEEEEEc---CeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeC------CCCCCHHHHHHHHHHHhCCccc
Q 035818 3 SDVAGDITIVVD---GESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELH------NIPGGPQTFELAVKFCYGMNFE 72 (568)
Q Consensus 3 s~~~sDV~i~V~---g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~------dipGG~eaFe~vl~F~Yt~~i~ 72 (568)
++.+|||+|.|| |+.|++||.+|+++|+||++||+ +++|+...+|+|+ +++ +++|+.+++|+|||++.
T Consensus 29 ~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Ytg~~~ 106 (279)
T 3i3n_A 29 QGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYTGRIR 106 (279)
T ss_dssp HTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHHSEEE
T ss_pred cCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCcCCcc
Confidence 378999999998 99999999999999999999999 6888888899998 778 99999999999999999
Q ss_pred CChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHh
Q 035818 73 ITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNA 149 (568)
Q Consensus 73 it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a 149 (568)
++.+|+..|+.||++|+|++ |+..|++||.+.+ +.+||+.+ +.+|+.++ +.+.|.+.|..+.
T Consensus 107 i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l--~~~n~~~i-------~~~A~~~~~~~L~~~~~~~i~~~f 171 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKL--HLSNCVAI-------HSLAHMYTLSQLALKAADMIRRNF 171 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CTTTHHHH-------HHHHHHTTCHHHHHHHHHHHHHTH
T ss_pred cCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcC--CcchHHHH-------HHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999 99999988 45666665 5666666665432
Q ss_pred hhhhhhcccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccC
Q 035818 150 CKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWN 229 (568)
Q Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~ 229 (568)
.. . +..++|..|+.+.+..+|++......+|+.|+++++.|+++..+.+
T Consensus 172 ~~---------------------v---~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r------- 220 (279)
T 3i3n_A 172 HK---------------------V---IQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEER------- 220 (279)
T ss_dssp HH---------------------H---TTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHH-------
T ss_pred HH---------------------H---hcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHH-------
Confidence 11 0 2457899999999999999877766679999999999998876532
Q ss_pred ccccccCcccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhhcCCHHhHHHHHHHHHhhh
Q 035818 230 PARMKSNRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRL 296 (568)
Q Consensus 230 ~~~~~~~~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l~as~~Cr~~LE~rIg~qL 296 (568)
..+...|++.| |++.+|..+|..+++...++..++.|+..|.++..-++
T Consensus 221 -----------~~~~~~ll~~V-------Rf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~~~~~ 269 (279)
T 3i3n_A 221 -----------ERYFEELFKLL-------RLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHA 269 (279)
T ss_dssp -----------TTTHHHHHTTS-------CGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhc-------CCCCCCHHHHHHHhhccchhcCCHHHHHHHHHHHHhcc
Confidence 13345666666 77899999999999999999999999999988765443
No 3
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=186.55 Aligned_cols=127 Identities=22% Similarity=0.307 Sum_probs=115.1
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
+.+|||+|.|+|+.|++||.+|+++|+||++||. ++.|+....|.|++++ +++|+.+++|+||+++.++.+|+..|+
T Consensus 32 ~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~~~~ll 109 (172)
T 3htm_A 32 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLL 109 (172)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHH
T ss_pred CCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 6789999999999999999999999999999999 6788888899999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHH
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAV 147 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~ 147 (568)
.+|++|+|++ |...|++||.+.+ +.+||+.++ .+|+.++ |.+.|.+.|..
T Consensus 110 ~~A~~~~~~~------l~~~c~~~l~~~l--~~~n~~~~~-------~~A~~~~~~~L~~~~~~~i~~ 162 (172)
T 3htm_A 110 AAADKYALER------LKVMCEDALCSNL--SVENAAEIL-------ILADLHSADQLKTQAVDFINY 162 (172)
T ss_dssp HHHHHTTCHH------HHHHHHHHHHHTC--CTTTHHHHH-------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHH------HHHHHHHHHHHhC--CHHHHHHHH-------HHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999 9999999999988 889998884 4566554 56667666654
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=170.49 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=91.2
Q ss_pred CCCcccEEEEEcC----eEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhh
Q 035818 3 SDVAGDITIVVDG----ESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTN 77 (568)
Q Consensus 3 s~~~sDV~i~V~g----~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~N 77 (568)
++.+|||+|.|+| +.|++||.+|+++|+||++||. ++.|+. ..|.|++++ +++|+.+++|+||+++.++.+|
T Consensus 5 ~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~~~~ 81 (109)
T 2vkp_A 5 NELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLEADT 81 (109)
T ss_dssp CCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCCTTT
T ss_pred CCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCCHHH
Confidence 4789999999998 8999999999999999999999 577777 899999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 78 VASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 78 V~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+..++.+|++|+|+. |+..|++||.+.+
T Consensus 82 ~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 82 VLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 999999999999999 9999999998753
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.85 E-value=2.2e-21 Score=172.30 Aligned_cols=98 Identities=21% Similarity=0.356 Sum_probs=89.9
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||. ++.|+....|+|++++ +++|+.+++|+|||++.++.+|+..+
T Consensus 22 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~~~l 99 (120)
T 2if5_A 22 QGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANVGDI 99 (120)
T ss_dssp TTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGHHHH
T ss_pred cCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 47899999999999999999999999999999999 5778888899999999 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHH
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLN 108 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~ 108 (568)
+.+|++|+|++ |++.|++||.
T Consensus 100 l~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 100 LSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHhCCHH------HHHHHHHHhC
Confidence 99999999999 9999999983
No 6
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.85 E-value=5.9e-22 Score=180.76 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=91.1
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
+.+|||+|.|+|+.|++||.+|+++|+||++||. ++.++....|.|++++ +++|+.+++|+||+++.++.+|+..++
T Consensus 23 ~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~ll 100 (145)
T 4eoz_A 23 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLL 100 (145)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHH
T ss_pred CCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHHHHHHHH
Confidence 6789999999999999999999999999999999 5677777899999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG 136 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~ 136 (568)
.+|++|+|++ |+..|++||.+.+ +.+||+.+ +.+|+.|+
T Consensus 101 ~~A~~~~~~~------l~~~c~~~l~~~l--~~~n~~~~-------l~~A~~~~ 139 (145)
T 4eoz_A 101 AAADKYALER------LKVMCEDALCSNL--SVENAAEI-------LILADLHS 139 (145)
T ss_dssp HHHHHTTCHH------HHHHHHCC------------------------------
T ss_pred HHHHHhCHHH------HHHHHHHHHHHhC--CHHHHHHH-------HHHHHHhC
Confidence 9999999999 9999999999998 88888776 55666665
No 7
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.84 E-value=5.8e-21 Score=171.44 Aligned_cols=98 Identities=28% Similarity=0.476 Sum_probs=92.9
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeee-CCCCCCHHHHHHHHHHHhCCcccCChhhHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLEL-HNIPGGPQTFELAVKFCYGMNFEITTTNVAS 80 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L-~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~ 80 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||. ++.| ....|+| ++++ +++|+.+++|+||+++.++.+|+..
T Consensus 26 ~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ 102 (127)
T 1r29_A 26 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNIMA 102 (127)
T ss_dssp TTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTHHH
T ss_pred cCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCC--HHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 47899999999999999999999999999999999 5666 6789999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhHHHHHHHHHHH
Q 035818 81 LRCAAEYLEMTEDYRDENLVARTEVYLNE 109 (568)
Q Consensus 81 Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~ 109 (568)
|+.+|++|+|++ |+..|++||.+
T Consensus 103 ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 103 VMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHh
Confidence 999999999999 99999999975
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.83 E-value=1.1e-20 Score=168.57 Aligned_cols=96 Identities=24% Similarity=0.382 Sum_probs=90.7
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+ +..+|+|++++ +++|+.+++|+|||++.++.+|+..++
T Consensus 25 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll 98 (121)
T 1buo_A 25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLL 98 (121)
T ss_dssp HTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHH
T ss_pred cCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC----CCcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHH
Confidence 368999999999999999999999999999999974 25689999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHHH
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNEV 110 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~~ 110 (568)
.+|++|+|++ |+..|++||.+.
T Consensus 99 ~~A~~~~i~~------L~~~c~~~l~~~ 120 (121)
T 1buo_A 99 YAAEILEIEY------LEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHCCHH------HHHHHHHHHHHh
Confidence 9999999999 999999999875
No 9
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=4.1e-21 Score=170.98 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=88.8
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+.. ...|+|++++ +++|+.+++|+|||++.++.+|+..|+
T Consensus 21 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll 95 (119)
T 3b84_A 21 KGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVL 95 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred cCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 36899999999999999999999999999999998422 4689999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHHH
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNEV 110 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~~ 110 (568)
.+|++|+|++ |++.|++||.+.
T Consensus 96 ~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 96 LAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHhCcHH------HHHHHHHHHHHc
Confidence 9999999999 999999998764
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=9.1e-21 Score=167.52 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=88.7
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeC--CCCCCHHHHHHHHHHHhCCcccCChhhHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELH--NIPGGPQTFELAVKFCYGMNFEITTTNVAS 80 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~--dipGG~eaFe~vl~F~Yt~~i~it~~NV~~ 80 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ....|.|+ +++ +++|+.+++|+|||++.++.+|+..
T Consensus 19 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~~~~~v~~ 93 (116)
T 2vpk_A 19 AGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVK--ADGFQKLLEFIYTGTLNLDSWNVKE 93 (116)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCC--HHHHHHHHHHHHHSCCCCCTTTHHH
T ss_pred cCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCC--HHHHHHHHHHHcCCCcccCHHHHHH
Confidence 3689999999999999999999999999999999854 35577787 999 9999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhHHHHHHHHHH
Q 035818 81 LRCAAEYLEMTEDYRDENLVARTEVYLN 108 (568)
Q Consensus 81 Ll~AA~~L~m~e~~~~~NL~~~ce~fL~ 108 (568)
++.+|++|+|++ |++.|++||.
T Consensus 94 ll~~A~~~~i~~------L~~~C~~~l~ 115 (116)
T 2vpk_A 94 IHQAADYLKVEE------VVTKCKIKME 115 (116)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHhCCHH------HHHHHHHHHh
Confidence 999999999999 9999999985
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=175.31 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=88.8
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCcc--CCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKD--SNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA 79 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~e--s~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~ 79 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||. ++.+ +....|.|++++ +++|+.+++|+|||++.++.+|+.
T Consensus 44 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~ 121 (144)
T 2ppi_A 44 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQ 121 (144)
T ss_dssp --CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTTTHH
T ss_pred cCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHH
Confidence 47899999999999999999999999999999998 5544 567799999999 999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHHH
Q 035818 80 SLRCAAEYLEMTEDYRDENLVARTEVYLN 108 (568)
Q Consensus 80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~ 108 (568)
.|+.+|++|+|++ |+..|++||.
T Consensus 122 ~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 122 DVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp HHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred HHHHHHHHhCcHH------HHHHHHHHhC
Confidence 9999999999999 9999999874
No 12
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.82 E-value=6.4e-21 Score=174.01 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=91.4
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcC-CccCCCCeeeeC-CCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVAD-AKDSNSSKLELH-NIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~-~~es~~~~I~L~-dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
+.+|||+|.|+|+.|++||.||+++|+||++||.+ +.+ ...|.|+ +++ +++|+.+++|+|||++.++.+|+..|
T Consensus 34 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~~v~~l 109 (138)
T 2z8h_A 34 DVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVT--VKGFEPLIQFAYTAKLILSKDNVDEV 109 (138)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTHHHH
T ss_pred CCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCC--HHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 67999999999999999999999999999999994 443 3578895 899 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+.+|++|+|++ |+..|++||.+.+
T Consensus 110 l~~A~~~~i~~------L~~~C~~~l~~~l 133 (138)
T 2z8h_A 110 CRCVEFLSVHN------IEESCFQFLKFKF 133 (138)
T ss_dssp HHHHHHHTCGG------GHHHHHHHTTCCC
T ss_pred HHHHHHhCCHH------HHHHHHHHHHHhc
Confidence 99999999999 9999999999877
No 13
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=6.9e-21 Score=173.43 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=88.2
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
.+.+|||+|.|+|+.|++||.||+++|+||++||.+.. ..+|+|++++ +++|+.+++|+||+++.++.+|+..|+
T Consensus 22 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll 96 (135)
T 2yy9_A 22 KGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVL 96 (135)
T ss_dssp TTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred cCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 47899999999999999999999999999999998422 4679999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.||++|+|++ |++.|++||.+.+
T Consensus 97 ~~A~~l~i~~------L~~~C~~~l~~~l 119 (135)
T 2yy9_A 97 LAAKELRVPE------AVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHTTCHH------HHHHHHHCCC---
T ss_pred HHHHHhCcHH------HHHHHHHHHHHhc
Confidence 9999999999 9999999998876
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.82 E-value=1.5e-20 Score=167.39 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=88.3
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+ ....|.|++++ +++|+.+++|+|||++.++.+|+..|+
T Consensus 24 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~--~~~f~~ll~~~Ytg~~~i~~~~~~~ll 97 (119)
T 2q81_A 24 LGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISN--AAGLGQVLEFMYTAKLSLSPENVDDVL 97 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH----CCSGGGGGGCC--HHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred cCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC----CCCEEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 368999999999999999999999999999999984 24578899999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHH
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLN 108 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~ 108 (568)
.+|++|+|++ |++.|++||.
T Consensus 98 ~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 98 AVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp HHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHhCCHH------HHHHHHHHHh
Confidence 9999999999 9999999985
No 15
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.82 E-value=3.9e-20 Score=190.11 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=112.8
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
++.+|||+|.|+|+.|++||.+||++|+||++||. ++.|+...+|+|++++ +++|+.+++|+||+.+.++.+|+..|
T Consensus 171 ~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~~~l 248 (312)
T 3hqi_A 171 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDL 248 (312)
T ss_dssp TTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHHHHH
Confidence 36789999999999999999999999999999999 5788888999999999 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHH
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVN 148 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~ 148 (568)
+.||++|+|+. |+..|++||.+.+ +.+|++.+| .+|+.++ |.+.|++.|+.+
T Consensus 249 l~~A~~~~~~~------l~~~c~~~l~~~~--~~~n~~~~l-------~~A~~~~~~~L~~~~~~~i~~~ 303 (312)
T 3hqi_A 249 LAAADKYALER------LKVMCEDALCSNL--SVENAAEIL-------ILADLHSADQLKTQAVDFINYH 303 (312)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHTTC--CTTTHHHHH-------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCHHH------HHHHHHHHHHccC--CHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999 9999999999988 888888874 5566664 677888877653
No 16
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=8e-21 Score=171.29 Aligned_cols=98 Identities=23% Similarity=0.482 Sum_probs=84.3
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeC-CCCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELH-NIPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~-dipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ....|+|+ +++ +++|+.+++|+|||++.++.+|+..|
T Consensus 30 ~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~~~l 104 (129)
T 3ga1_A 30 QGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQDLL 104 (129)
T ss_dssp TTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTHHHH
T ss_pred cCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHHHHH
Confidence 4679999999999999999999999999999999843 56789997 999 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+.||++|+|++ |++.|++||.+..
T Consensus 105 l~~A~~~~i~~------l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 105 MYTAGFLQIQE------IMEKGTEFFLKVS 128 (129)
T ss_dssp HHHHHHTTBTT------SSCC---------
T ss_pred HHHHHHhCCHH------HHHHHHHHHHHhc
Confidence 99999999999 9999999998754
No 17
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=8.6e-21 Score=169.85 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=87.6
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcC-CccCCCCeeeeCC-CCCCHHHHHHHHHHHhCCcccCChhhHHHH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVAD-AKDSNSSKLELHN-IPGGPQTFELAVKFCYGMNFEITTTNVASL 81 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~-~~es~~~~I~L~d-ipGG~eaFe~vl~F~Yt~~i~it~~NV~~L 81 (568)
+.+|||+|.|+|+.|++||.+|+++|+||++||.+ +.+ ...|.+++ ++ +++|+.+++|+|||++.++.+|+..|
T Consensus 30 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~~v~~l 105 (125)
T 3ohu_A 30 DILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVT--ARGFGPLLQFAYTAKLLLSRENIREV 105 (125)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCC--HHHHHHHHHHHTTSEEEECTTTHHHH
T ss_pred CCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCC--HHHHHHHHHhHcCCceEECHHHHHHH
Confidence 67999999999999999999999999999999994 443 56899998 99 99999999999999999999999999
Q ss_pred HHHHHHhccccccchhhHHHHHHHHH
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYL 107 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL 107 (568)
+.+|++|+|++ |++.|++||
T Consensus 106 l~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 106 IRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp HHHHHHHTBSS------CTTSSCCCC
T ss_pred HHHHHHhCCHH------HHHHHHHhC
Confidence 99999999999 999998774
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=3.4e-20 Score=165.81 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=84.0
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR 82 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll 82 (568)
.+.+|||+|.|+|+.|++||.|||++|+||++ ....|+|++++ +++|+.+++|+|||++.++.+||..|+
T Consensus 27 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll 96 (119)
T 3m5b_A 27 RPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQ 96 (119)
T ss_dssp TTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHH
T ss_pred cCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHH
Confidence 37899999999999999999999999999974 24578999999 999999999999999999999999999
Q ss_pred HHHHHhccccccchhhHHHHHHHHHHH
Q 035818 83 CAAEYLEMTEDYRDENLVARTEVYLNE 109 (568)
Q Consensus 83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~ 109 (568)
.||++|+|+. |++.|++++.+
T Consensus 97 ~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 97 EAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp HHHHHTTCHH------HHHHHHHHC--
T ss_pred HHHHHhCCHH------HHHHHHHHHhh
Confidence 9999999999 99999998765
No 19
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=1.7e-20 Score=168.19 Aligned_cols=96 Identities=23% Similarity=0.396 Sum_probs=86.5
Q ss_pred CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcC-CccCCCCeeee-CCCCCCHHHHHHHHHHHhCCcccCChhhHHH
Q 035818 3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVAD-AKDSNSSKLEL-HNIPGGPQTFELAVKFCYGMNFEITTTNVAS 80 (568)
Q Consensus 3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~-~~es~~~~I~L-~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~ 80 (568)
++.+|||+|.|+|+.|++||.+|+++|+||++||.+ +.+ ...|.+ .+++ +++|+.+++|+|||++.++.+|+..
T Consensus 26 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e--~~~i~l~~~v~--~~~f~~lL~~iYtg~~~i~~~~v~~ 101 (124)
T 2ihc_A 26 KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG--ELNITLPEEVT--VKGFEPLIQFAYTAKLILSKENVDE 101 (124)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-----CEEEECCTTSC--HHHHHHHHHHHHHSEEEEETTTHHH
T ss_pred cCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC--CceEeecCCcC--HHHHHHHHHHhcCCCcccCHHHHHH
Confidence 367999999999999999999999999999999994 443 357889 4899 9999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhHHHHHHHHHH
Q 035818 81 LRCAAEYLEMTEDYRDENLVARTEVYLN 108 (568)
Q Consensus 81 Ll~AA~~L~m~e~~~~~NL~~~ce~fL~ 108 (568)
|+.+|++|+|++ |++.|++||.
T Consensus 102 ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 102 VCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHTBSS------CCGGGGGTC-
T ss_pred HHHHHHHHCCHH------HHHHHHHHHh
Confidence 999999999999 9999999874
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.75 E-value=2.6e-18 Score=152.50 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=78.9
Q ss_pred CCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcc-cCChhhHHHHH
Q 035818 4 DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNF-EITTTNVASLR 82 (568)
Q Consensus 4 ~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i-~it~~NV~~Ll 82 (568)
+.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...|+|++++ +++|+.+++|+|||++ .++.+|+..++
T Consensus 29 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll 102 (116)
T 3fkc_A 29 GLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELI 102 (116)
T ss_dssp TTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHH
T ss_pred CCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHH
Confidence 679999999999999999999999999999999843 5689999999 9999999999999999 79999999999
Q ss_pred HHHHHhcccc
Q 035818 83 CAAEYLEMTE 92 (568)
Q Consensus 83 ~AA~~L~m~e 92 (568)
.+|++|+|+.
T Consensus 103 ~~A~~l~i~~ 112 (116)
T 3fkc_A 103 KSGQLLGVKF 112 (116)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHhCccc
Confidence 9999999998
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.40 E-value=7.1e-13 Score=124.20 Aligned_cols=94 Identities=20% Similarity=0.357 Sum_probs=82.7
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcC--Cc-cCCCCeeeeCCCCCCHHHHHHHHHHHhCCc--------------
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVAD--AK-DSNSSKLELHNIPGGPQTFELAVKFCYGMN-------------- 70 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~--~~-es~~~~I~L~dipGG~eaFe~vl~F~Yt~~-------------- 70 (568)
|+|.. +|+.|.+|+.+ |++|+||+.||.+ +. |+....|.|++|+ +.+++.+++|||+.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 67764 79999999999 8999999999984 34 5566789999999 999999999999887
Q ss_pred ------------ccCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 71 ------------FEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 71 ------------i~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+.++..|+..|+.||+||+|.. |+..|++|+...+
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~~i 126 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMI 126 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 8899999999999999999999 9999999999988
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.18 E-value=6.3e-11 Score=101.96 Aligned_cols=78 Identities=18% Similarity=0.408 Sum_probs=65.3
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcC---CccCCCCeeeeCCCCCCHHHHHHHHHHHh-----C---Cccc---C
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVAD---AKDSNSSKLELHNIPGGPQTFELAVKFCY-----G---MNFE---I 73 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~---~~es~~~~I~L~dipGG~eaFe~vl~F~Y-----t---~~i~---i 73 (568)
|++.- +|+.|.+||.+ |++|+||++||.+ +.|+....|.|++++ +.+++.+++||| + +.+. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 45553 78999999999 9999999999984 455667789999999 999999999999 5 6777 9
Q ss_pred ChhhHHHHHHHHHHhc
Q 035818 74 TTTNVASLRCAAEYLE 89 (568)
Q Consensus 74 t~~NV~~Ll~AA~~L~ 89 (568)
+.+|+.+|+.||+||+
T Consensus 81 ~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 81 APEIALELLMAANFLD 96 (97)
T ss_dssp CGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhC
Confidence 9999999999999997
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.10 E-value=2.3e-10 Score=105.11 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=81.9
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCc-----------------
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMN----------------- 70 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~----------------- 70 (568)
|++.. +|+.|.+|+.+ |..|+||+.||.+.. ...|.|++|+ +.+++.+++|||...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 77 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 77 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCC--HHHHHHHHHHHHHHTTCC--------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchh
Confidence 66765 78999999998 899999999998432 4579999999 999999999999755
Q ss_pred ---------ccCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 71 ---------FEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 71 ---------i~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+.++.+++.+|+.||+||++.. |+..|++|+...+
T Consensus 78 ~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~i 121 (141)
T 1fs1_B 78 DIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMI 121 (141)
T ss_dssp ---HHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence 7789999999999999999999 9999999999988
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.89 E-value=3.1e-10 Score=106.38 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=56.4
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCc-----------------
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMN----------------- 70 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~----------------- 70 (568)
|+|.. +|+.|.+|+.+ |..|+||+.||.+.. ....|.|++|+ +.+++.|++|||...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 80 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSC--HHHHHHHHHC----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCc--HHHHHHHHHHHHHcccCCCccccccccccccc
Confidence 66664 79999999998 899999999998432 23479999999 999999999999865
Q ss_pred ----------ccCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhc-cChhHHHHH
Q 035818 71 ----------FEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVV-QSLEKSVEV 121 (568)
Q Consensus 71 ----------i~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~-~s~~n~i~v 121 (568)
+.++..++.+|+.||+||+|.. |+..|++|+...+- .++++.-.+
T Consensus 81 ~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~ikgkt~eeir~~ 136 (160)
T 2p1m_A 81 DDLKAWDADFMKIDQATLFELILAANYLNIKN------LLDLTCQTVADMIKGKTPEEIRTT 136 (160)
T ss_dssp --------------------CHHHHHHTTCHH------HHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred chhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4688899999999999999999 99999999999872 344444433
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.43 E-value=8.4e-07 Score=83.79 Aligned_cols=95 Identities=17% Similarity=0.315 Sum_probs=77.6
Q ss_pred cEEEEE-cCeEEEeehHhhcccCHHHHHhhcCCcc-----CCCCeeeeCCCCCCHHHHHHHHHHHhCCc-----------
Q 035818 8 DITIVV-DGESFLLHKFPLVSRSGKIRKMVADAKD-----SNSSKLELHNIPGGPQTFELAVKFCYGMN----------- 70 (568)
Q Consensus 8 DV~i~V-~g~~F~~HK~vLas~S~yFr~lf~~~~e-----s~~~~I~L~dipGG~eaFe~vl~F~Yt~~----------- 70 (568)
-|+|.- +|+.|.+++.+ |..|++++.|+.+... .....|.|++|+ +.+++.|++|||.-+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 356654 78899999997 7899999999984321 233689999999 999999999999532
Q ss_pred --------------ccCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 71 --------------FEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 71 --------------i~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
+.++...+.+|+.||+||+|.. |+..|++++...+
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i 133 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP------LLDAGCKVVAEMI 133 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 3567788999999999999999 9999999998876
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.42 E-value=4.3e-07 Score=77.94 Aligned_cols=79 Identities=19% Similarity=0.404 Sum_probs=63.9
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcC--C-ccCCCCeeeeCCCCCCHHHHHHHHHHHhCCc-----------ccC
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVAD--A-KDSNSSKLELHNIPGGPQTFELAVKFCYGMN-----------FEI 73 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~--~-~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~-----------i~i 73 (568)
|++.- +|..|.+|+.+ |..|++|+.|+.+ . .|+....|.|++|+ +.+++.+++|||.-. ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 55654 89999999996 8999999999984 2 35555689999999 999999999999632 357
Q ss_pred ChhhHHHHHHHHHHhcc
Q 035818 74 TTTNVASLRCAAEYLEM 90 (568)
Q Consensus 74 t~~NV~~Ll~AA~~L~m 90 (568)
+.+.+.+|+.||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999975
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.41 E-value=8.3e-07 Score=76.58 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=66.8
Q ss_pred EEEEE-cCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCc--------------ccC
Q 035818 9 ITIVV-DGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMN--------------FEI 73 (568)
Q Consensus 9 V~i~V-~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~--------------i~i 73 (568)
|++.- +|+.|.+|+.+ |..|++++.|+.+.-+.....|.|++++ +.+++.+++|||.-+ ..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 66665 89999999996 8999999999984224455689999999 999999999999632 357
Q ss_pred ChhhHHHHHHHHHHhcc
Q 035818 74 TTTNVASLRCAAEYLEM 90 (568)
Q Consensus 74 t~~NV~~Ll~AA~~L~m 90 (568)
+...+.+|+.||+||++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999975
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.92 E-value=6e-05 Score=65.65 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=73.3
Q ss_pred cEEEEEcCeEEEeehHhhcccC-HHHHHhhcCCcc-----CCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHH
Q 035818 8 DITIVVDGESFLLHKFPLVSRS-GKIRKMVADAKD-----SNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVAS 80 (568)
Q Consensus 8 DV~i~V~g~~F~~HK~vLas~S-~yFr~lf~~~~e-----s~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~ 80 (568)
=|+|.|||+.|...+..|.... .+|.+||.+..+ ....++-+ |-+ |..|+.+++|+.+|++.+..+ ....
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRd--p~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRD--PTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSC--HHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCC--hHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 3678999999999999999876 578999974211 12233433 677 999999999999999887543 4578
Q ss_pred HHHHHHHhccccccchhhHHHHHHHHHHH
Q 035818 81 LRCAAEYLEMTEDYRDENLVARTEVYLNE 109 (568)
Q Consensus 81 Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~ 109 (568)
++.-|+|+++++ |++.|++-+.+
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~~ 106 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHhc
Confidence 999999999999 99999876543
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.92 E-value=1.6e-05 Score=70.01 Aligned_cols=79 Identities=19% Similarity=0.403 Sum_probs=63.4
Q ss_pred EEEE-EcCeEEEeehHhhcccCHHHHHhhcCC---ccCCCCeeeeCCCCCCHHHHHHHHHHHhCCc-----------ccC
Q 035818 9 ITIV-VDGESFLLHKFPLVSRSGKIRKMVADA---KDSNSSKLELHNIPGGPQTFELAVKFCYGMN-----------FEI 73 (568)
Q Consensus 9 V~i~-V~g~~F~~HK~vLas~S~yFr~lf~~~---~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~-----------i~i 73 (568)
|++. -+|..|.+++. .|..|+.++.|+.+. .|.....|.|++|+ +.+++.|++|||.-. ..+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 5555 48899999999 578999999999842 34444689999999 999999999998532 357
Q ss_pred ChhhHHHHHHHHHHhcc
Q 035818 74 TTTNVASLRCAAEYLEM 90 (568)
Q Consensus 74 t~~NV~~Ll~AA~~L~m 90 (568)
+..++.+|+.||+||++
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999975
No 30
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00072 Score=58.33 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=42.2
Q ss_pred hhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccCcccchHHHHHHHHHHH
Q 035818 179 IEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLV 252 (568)
Q Consensus 179 ~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv 252 (568)
.++|..|+.+.+..+|+.. ..+|+.|++|++.|+++....+ ..+...||+.|.
T Consensus 46 ~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv~~d~~~R------------------~~~~~~Ll~~VR 98 (105)
T 2eqx_A 46 TEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWINFNKEER------------------EAFAESLRTSLK 98 (105)
T ss_dssp SHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHHHTTHHHH------------------HHHHHHHHHHCC
T ss_pred cccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCHHHH------------------HHHHHHHHHHHH
Confidence 4789999999999999983 4578899999999998886542 345677888773
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.61 E-value=0.005 Score=59.46 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=72.1
Q ss_pred EEEEEcCeEEEeehHhhcccC-HHHHHhhcCCcc-----CCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRS-GKIRKMVADAKD-----SNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVASL 81 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S-~yFr~lf~~~~e-----s~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~L 81 (568)
|+|.|||..|...+..|.... .+|.+||.+..+ ....++-+ |-+ |..|..|++|+-+|++.+..+ ....+
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRD--P~~F~~ILnyLRtG~L~lP~~~~~~~l 90 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRD--PTYFGPVLNYLRHGKLVINKDLAEEGV 90 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSC--STTHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCC--hHHHHHHHHHhcCCccCCCCCCCHHHH
Confidence 678999999999999998765 478999873211 11223333 566 899999999999999987543 35679
Q ss_pred HHHHHHhccccccchhhHHHHHHHHHHHH
Q 035818 82 RCAAEYLEMTEDYRDENLVARTEVYLNEV 110 (568)
Q Consensus 82 l~AA~~L~m~e~~~~~NL~~~ce~fL~~~ 110 (568)
+.-|+|+++++ |+..|++-+.+.
T Consensus 91 ~eEA~FygL~~------Lv~~l~~~i~er 113 (202)
T 3drx_A 91 LEEAEFYNITS------LIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHCCcHH------HHHHHHHHHHHH
Confidence 99999999999 999998877643
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.56 E-value=0.017 Score=50.88 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred EEEEEcCeEEEeehHhhcccCH-HHHHhhcCCc--cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRSG-KIRKMVADAK--DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVASLRCA 84 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S~-yFr~lf~~~~--es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~Ll~A 84 (568)
|+|.|||..|...+..|....+ +|.+|+.+.. .....++-+ |-+ |..|..|++|.-+|++.+..+ .+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRd--p~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRH--PGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSC--TTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecC--hHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 7899999999999999987643 4666776321 122334444 556 899999999999999987653 57889999
Q ss_pred HHHhcccc
Q 035818 85 AEYLEMTE 92 (568)
Q Consensus 85 A~~L~m~e 92 (568)
|+|+++++
T Consensus 84 a~fy~i~~ 91 (115)
T 3kvt_A 84 LEFWGLDS 91 (115)
T ss_dssp HHHHTCCG
T ss_pred HHHhCCCh
Confidence 99999998
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.57 E-value=0.065 Score=45.95 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred EEEEEcCeEEEeehHhhcccCH-HHHHhhcC--CccCCCCeeeeCCCCCCHHHHHHHHHHHhC-CcccCCh-hhHHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRSG-KIRKMVAD--AKDSNSSKLELHNIPGGPQTFELAVKFCYG-MNFEITT-TNVASLRC 83 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S~-yFr~lf~~--~~es~~~~I~L~dipGG~eaFe~vl~F~Yt-~~i~it~-~NV~~Ll~ 83 (568)
|+|.|||..|...+..|...-+ .+.+|+.. .-.....++-+ |-+ |..|+.+++|.-+ |++.+.. -.+..++.
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRd--p~~F~~ILnflR~~G~l~~p~~~~~~~~~~ 79 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRN--RPSFDAILYFYQSGGRLRRPVNVPLDVFSE 79 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSC--STTHHHHHHHHHTTSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCC--hHHHHHHHHHHhcCCcccCCCCCCHHHHHH
Confidence 7899999999999999965422 34444431 11123334444 556 8999999999998 8987654 34788999
Q ss_pred HHHHhcccc
Q 035818 84 AAEYLEMTE 92 (568)
Q Consensus 84 AA~~L~m~e 92 (568)
-|+|+++++
T Consensus 80 Ea~fy~i~~ 88 (100)
T 1t1d_A 80 EIKFYELGE 88 (100)
T ss_dssp HHHHTTCCH
T ss_pred HHHHcCCCH
Confidence 999999998
No 34
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.89 E-value=0.084 Score=46.99 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=57.8
Q ss_pred cEEEEEcCeEEEeehHhhcccCHHHHHhhcCC-c----cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHHH
Q 035818 8 DITIVVDGESFLLHKFPLVSRSGKIRKMVADA-K----DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVASL 81 (568)
Q Consensus 8 DV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~-~----es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~L 81 (568)
=|+|.|||..|..-+..|...-+ .|+... + .....++-+ |-+ |..|..|++|.-+|++.+..+ .+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRd--p~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRD--PEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSC--HHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCC--hHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 37789999999999999976533 233321 0 112223333 556 999999999999999887543 47889
Q ss_pred HHHHHHhcccc
Q 035818 82 RCAAEYLEMTE 92 (568)
Q Consensus 82 l~AA~~L~m~e 92 (568)
+.-|+|+++++
T Consensus 88 ~~Ea~fy~i~~ 98 (124)
T 1s1g_A 88 DDELAFYGILP 98 (124)
T ss_dssp HHHHHHTTCCG
T ss_pred HHHHHHcCCCh
Confidence 99999999998
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=92.52 E-value=0.053 Score=46.83 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=57.3
Q ss_pred EEEEEcCeEEEeehHhhcccCHHHHHhhcCCc-----cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRSGKIRKMVADAK-----DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVASLR 82 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~-----es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~Ll 82 (568)
|+|.|||..|...+..|....+ .|+..+. .....++-+ |-+ |..|..+++|.-+|++.+..+ .+..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRd--p~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRD--PDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSC--TTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCC--cHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 7899999999999999976533 2333210 011223333 456 899999999999999887543 478899
Q ss_pred HHHHHhcccc
Q 035818 83 CAAEYLEMTE 92 (568)
Q Consensus 83 ~AA~~L~m~e 92 (568)
.-|+|+++++
T Consensus 76 ~Ea~fy~i~~ 85 (105)
T 1nn7_A 76 EELAFFGLIP 85 (105)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHcCCCH
Confidence 9999999998
No 36
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=91.20 E-value=0.36 Score=43.77 Aligned_cols=79 Identities=10% Similarity=0.214 Sum_probs=58.2
Q ss_pred cEEEEEcCeEEEeehHhhcccCHHHHHhhcCCc-----cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChh-hHHHH
Q 035818 8 DITIVVDGESFLLHKFPLVSRSGKIRKMVADAK-----DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTT-NVASL 81 (568)
Q Consensus 8 DV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~-----es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~-NV~~L 81 (568)
=|+|.|||..|...+..|...-+ .|+.... .....++-+ |-+ |..|+.|++|.-+|++.+..+ .+..+
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRd--p~~F~~ILnflR~G~l~~p~~~~~~~l 109 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRD--PEVFRCVLNFYRTGKLHYPRYECISAY 109 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSC--HHHHHHHHHHHHHSSBCCCTTSCHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCC--cHHHHHHHHHHhcCCcCCCCCcCHHHH
Confidence 37889999999999999976532 2333210 112233333 556 999999999999999887543 47889
Q ss_pred HHHHHHhcccc
Q 035818 82 RCAAEYLEMTE 92 (568)
Q Consensus 82 l~AA~~L~m~e 92 (568)
+.-|+|+++++
T Consensus 110 ~eEa~fy~i~~ 120 (140)
T 2nz0_B 110 DDELAFYGILP 120 (140)
T ss_dssp HHHHHHHTCCG
T ss_pred HHHHHHcCCCh
Confidence 99999999998
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.71 E-value=3.8 Score=30.89 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 485 ENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 485 en~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
|.+.||.|++.+|.|+.+|.+++...+..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666655554
No 38
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=69.30 E-value=6.8 Score=42.60 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=56.7
Q ss_pred EEEEEcCeEEEeehHhhcccCH-HHHHhhcC--CccCCCCeeeeCCCCCCHHHHHHHHHHHhC-CcccCChh-hHHHHHH
Q 035818 9 ITIVVDGESFLLHKFPLVSRSG-KIRKMVAD--AKDSNSSKLELHNIPGGPQTFELAVKFCYG-MNFEITTT-NVASLRC 83 (568)
Q Consensus 9 V~i~V~g~~F~~HK~vLas~S~-yFr~lf~~--~~es~~~~I~L~dipGG~eaFe~vl~F~Yt-~~i~it~~-NV~~Ll~ 83 (568)
|+|.|||..|...+..|...-+ .+.+++.. ..+....++-+ |-+ |+.|+.+++|..+ |++.+..+ .+..+..
T Consensus 54 v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~--~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~ 130 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRN--RPSFDAILYYYQSGGRLRRPVNVPLDIFSE 130 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSC--HHHHHHHHHHHHHTSCCCCCTTSCHHHHHH
T ss_pred EEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCC--hHHHHHHHHHHhcCCccccCCcccHHHHHH
Confidence 6789999999999998865422 12222221 11122334444 566 9999999999999 99876543 4677889
Q ss_pred HHHHhcccc
Q 035818 84 AAEYLEMTE 92 (568)
Q Consensus 84 AA~~L~m~e 92 (568)
-|+|+++.+
T Consensus 131 E~~f~~i~~ 139 (514)
T 2r9r_B 131 EIRFYELGE 139 (514)
T ss_dssp HHHHTTCCH
T ss_pred HHHhcCCCH
Confidence 999999998
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=68.73 E-value=7.6 Score=28.83 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=30.8
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 481 SLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 481 ~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
.++.||-.||.|++.=...++.||.|-+.||..+
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 5688999999999999999999999999999765
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.08 E-value=15 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=27.9
Q ss_pred cchhhhHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 035818 477 DNYASLRRENRELKLEISRMRVRLSELEKEQM 508 (568)
Q Consensus 477 ~~~~~~~ren~~Lk~el~~m~~rv~eLe~~~~ 508 (568)
.++..+.+||.+||.+++.++.++.||.+...
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999987653
No 41
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=49.42 E-value=5.8 Score=25.43 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhcccc
Q 035818 76 TNVASLRCAAEYLEMTE 92 (568)
Q Consensus 76 ~NV~~Ll~AA~~L~m~e 92 (568)
.||+.|+.||+||+=-+
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 48999999999997433
No 42
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=49.33 E-value=12 Score=32.60 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=23.5
Q ss_pred hcCCCCCChHHHHHHHHhcCCCCcccchhHHHHHHHHHHhCCC
Q 035818 357 IAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPM 399 (568)
Q Consensus 357 iA~D~~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~Hp~ 399 (568)
...|.+.+|.++.+.+ .++++|||-||-+||.
T Consensus 91 ~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 91 KVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp ESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred ECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 3456677777776554 6789999999999983
No 43
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=39.31 E-value=23 Score=28.42 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=30.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 481 SLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 481 ~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
.+++|.+.||..|..+-.|+..||.|+.-+|+-.
T Consensus 12 AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 12 AVREEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577889999999999999999999999888865
No 44
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=37.95 E-value=38 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=30.7
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++.+|+..++..|+.+++++ |...|.+|+.+..
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~------L~~~~~~~i~~~~ 164 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQ------LKTQAVDFINYHA 164 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 478899999999999999999 9999999998754
No 45
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.05 E-value=48 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 485 ENRELKLEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 485 en~~Lk~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
..-.||.--..+-+||.+||..|..+.++++
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEie 35 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIE 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3456777788889999999999999999986
No 46
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.32 E-value=36 Score=28.52 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc
Q 035818 491 LEISRMRVRLSELEKEQMFMKQGMI 515 (568)
Q Consensus 491 ~el~~m~~rv~eLe~~~~~mk~~~~ 515 (568)
.||+.||..|.+||..+..||+..+
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998654
No 47
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=27.18 E-value=49 Score=26.99 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.6
Q ss_pred CccccHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 035818 301 DSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAE 356 (568)
Q Consensus 301 ~~~ydvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~yLaE 356 (568)
+..++.+++.||+..+...... .-+..++..||+++|-|..|
T Consensus 6 ~~~~~~~lI~ril~~~f~~~kt--------------rI~~dAl~l~aeyl~iFV~E 47 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRT--------------RVNGDALLLMAELLKVFVRE 47 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTC--------------EECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcc--------------cccHHHHHHHHHHHHHHHHH
Confidence 4568999999999986544321 12356899999999999988
No 48
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.32 E-value=98 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=23.5
Q ss_pred chhhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 035818 478 NYASLRRENRELKLEISRMRVRLSELEKE 506 (568)
Q Consensus 478 ~~~~~~ren~~Lk~el~~m~~rv~eLe~~ 506 (568)
.|.+.++..++|..++.+.+..+..||.+
T Consensus 8 qWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 8 QWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 47777777888888888888888888876
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.17 E-value=89 Score=23.96 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035818 481 SLRRENRELKLEISRMRVRLSELEKEQMFMKQGM 514 (568)
Q Consensus 481 ~~~ren~~Lk~el~~m~~rv~eLe~~~~~mk~~~ 514 (568)
.+..+.+.|+.+-..++.++..|++|...+|+-|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777888888888877766544
No 50
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=24.35 E-value=40 Score=27.74 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCccccHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 035818 300 GDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAE 356 (568)
Q Consensus 300 ~~~~ydvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~yLaE 356 (568)
.+..+..++|.||+..+...+.. .-+..++..|++++|-|..|
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kT--------------kIs~dAl~l~aeyl~iFV~E 51 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKT--------------KVSGDALQLMVELLKVFVVE 51 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTC--------------EECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCc--------------cccHHHHHHHHHHHHHHHHH
Confidence 45678999999999866543321 12356899999999999988
No 51
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=23.56 E-value=97 Score=30.43 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=30.6
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++.+|+..++..|+.+++++ |...|-+|+...+
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~------L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQ------LKTQAVDFINYHA 304 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHH
Confidence 468899999999999999999 9999999998754
No 52
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=21.70 E-value=2.8e+02 Score=21.76 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=43.7
Q ss_pred CCCCCChHHHHHHHHhcCCCCcccchhHHHHHHHHHHhCCC-CCHHHHhhhccccc--cccCCHHH
Q 035818 359 PDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPM-LTEHECKKLCKFID--CQKLSQEA 421 (568)
Q Consensus 359 ~D~~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~Hp~-ls~~Er~~lC~~~d--c~KLS~ea 421 (568)
.|..+....|+.+...- ....+.+.+|.+.|=+.+.+ |+..|=.++++.+. ..+++.+.
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 68899999999987653 23566788888887666664 99999888888764 45566554
No 53
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=21.44 E-value=94 Score=30.08 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=30.6
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++++|+..++..|+.+++++ |...|..|+....
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~------L~~~~~~~i~~~f 171 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQ------LALKAADMIRRNF 171 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTH
T ss_pred cCCcchHHHHHHHHHHcCcHH------HHHHHHHHHHHHH
Confidence 478999999999999999999 9999999997754
No 54
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=20.61 E-value=1e+02 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.5
Q ss_pred cCChhhHHHHHHHHHHhccccccchhhHHHHHHHHHHHHh
Q 035818 72 EITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVV 111 (568)
Q Consensus 72 ~it~~NV~~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l 111 (568)
.++++|+..++..|+.+++++ |...|..|+.+..
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~------L~~~~~~~i~~~f 163 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHH------VHYLATEYLETHF 163 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHH------HHHHHHHHHHHHH
Confidence 478899999999999999999 9999999998765
Done!