BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035819
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 1 GESCAQRIEKLKGEVR-LMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLN 59
E AQ IE LK + R ++L +++ D L ++D ++RLG+SYHFE EI L+
Sbjct: 39 AEKYAQEIEALKEQTRSMLLATGRKLAD------TLNLIDIIERLGISYHFEKEIDEILD 92
Query: 60 SIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESL 119
IYN+ ++ L ++L+FRLLRQHG++I + S ++ ESL
Sbjct: 93 QIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESL 140
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 1 GESCAQRIEKLKGEVR-LMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLN 59
E AQ IE LK + R ++L +++ D L ++D ++RLG+SYHFE EI L+
Sbjct: 39 AEKYAQEIEALKEQTRSMLLATGRKLAD------TLNLIDIIERLGISYHFEKEIDEILD 92
Query: 60 SIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESL 119
IYN+ ++ L ++L+FRLLRQHG++I + S ++ ESL
Sbjct: 93 QIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESL 140
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 39 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 91
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 92 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 139
Query: 119 L 119
L
Sbjct: 140 L 140
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 26 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 78
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 79 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 126
Query: 119 L 119
L
Sbjct: 127 L 127
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 41 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 93
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 94 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 141
Query: 119 L 119
L
Sbjct: 142 L 142
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 39 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 91
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 92 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 139
Query: 119 L 119
L
Sbjct: 140 L 140
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 39 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 91
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 92 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 139
Query: 119 L 119
L
Sbjct: 140 L 140
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 41 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 93
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 94 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 141
Query: 119 L 119
L
Sbjct: 142 L 142
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 1 GESCAQRIEKLKGEVRLML--DNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFL 58
E A+ IE LK + R ML K D L ++D ++RLG+SYHFE EI L
Sbjct: 39 AEKYAKEIEALKEQTRNMLLATGMKLAD-------TLNLIDTIERLGISYHFEKEIDDIL 91
Query: 59 NSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHES 118
+ IYN+ ++ L ++L+FRLLRQHG++I + S ++ ES
Sbjct: 92 DQIYNQNSNCND------------LCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 139
Query: 119 L 119
L
Sbjct: 140 L 140
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 24 EVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLL 83
E++ D + LE++D+LQR+G+S HF+ E K L+SIY + ++ KE ++ L
Sbjct: 43 ELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNP--FPKEERD--L 98
Query: 84 YAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESL 119
Y+ SL FRLLR+HG+ + V + E ++ ESL
Sbjct: 99 YSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESL 134
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 16/99 (16%)
Query: 6 QRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKR 65
+R ++LK EVR M+ V ++ L +D++QRLGVSYHF EI+ L +IY+
Sbjct: 50 KRHQQLKEEVRKMI-----VAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNN 104
Query: 66 NSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHV 104
N + E+ LY S+ FRLLR+HGY++ V
Sbjct: 105 N-----------DAENDLYTTSIRFRLLREHGYNVSCDV 132
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 7 RIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRN 66
+ +KL+ EVR ++N K + L LE++DN+QRLG+ Y FE +I+R L+
Sbjct: 45 KAKKLEAEVRREINNEK-----AEFLTLLELIDNVQRLGLGYRFESDIRRALD------- 92
Query: 67 SRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVS 106
R S+ ++ L+A +L FRLLRQHG+++ S
Sbjct: 93 -RFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFS 131
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 18 MLDNYKEV-DDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAK 76
M+D K + + VD++ LE++D+L+RLG+S HFE EI LNS Y Y
Sbjct: 69 MIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKY----------YTNN 118
Query: 77 ENQESLLYAASLEFRLLRQHGYDIHAHV 104
E E LY+ +L FRLLRQ+ + + V
Sbjct: 119 EIDERDLYSTALRFRLLRQYDFSVSQEV 146
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 7 RIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRN 66
R +L +VR++L E + LE++ +L+ LG+S F+ EIK L IYN+
Sbjct: 36 RKAELIVQVRILLKEKME------PVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK 89
Query: 67 SRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHV 104
+H E ++ LY +L FRLLRQHG++I V
Sbjct: 90 C-----FHNNEVEKMDLYFTALGFRLLRQHGFNISQDV 122
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASL 88
VD L L IVDN+ RLG+ HFE EIK L+ +Y N R + N + L +L
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNER--GIGWGRLNPIADLETTAL 353
Query: 89 EFRLLRQHGYDIHAHV 104
FRLLR H Y++ +
Sbjct: 354 GFRLLRLHRYNVSPAI 369
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASL 88
VD + IVD LQRLG+S +FE EIK L+ Y R + A+ + + ++
Sbjct: 243 VDLFEHIWIVDRLQRLGISRYFEEEIKECLD--YVHRYWTDNGICWARCSHVQDIDDTAM 300
Query: 89 EFRLLRQHGYDIHAHV 104
FRLLRQHGY + A V
Sbjct: 301 AFRLLRQHGYQVSADV 316
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASL 88
+D L L +VDN++ LG+ HF+ EIK L+ +Y + R +++ L +L
Sbjct: 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSER--GIGWGRDSLVPDLNTTAL 301
Query: 89 EFRLLRQHGYDIHAHVVSD 107
R LR HGY++ + V+++
Sbjct: 302 GLRTLRMHGYNVSSDVLNN 320
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASL 88
+D L VD ++RLG+ HF+ EIK L+ +Y+ + R A+EN + ++
Sbjct: 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDER--GIGWARENPVPDIDDTAM 325
Query: 89 EFRLLRQHGYDIHAHVV 105
R+LR HGY++ + V+
Sbjct: 326 GLRILRLHGYNVSSDVL 342
>pdb|1Y88|A Chain A, Crystal Structure Of Protein Of Unknown Function Af1548
Length = 199
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 78 NQESLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQ 114
+E+L + + RLL +HG++ +V+ G +EQ+
Sbjct: 13 GRENLYFQGHMVARLLEEHGFETKTNVIVQGNCVEQE 49
>pdb|4HKJ|D Chain D, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|H Chain H, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|L Chain L, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|P Chain P, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
Length = 206
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 41 LQRLGVSYHFEGEIKRFLNSIY 62
+ LGV+Y F E +R L SIY
Sbjct: 141 INHLGVNYSFXNECERKLTSIY 162
>pdb|3UUX|B Chain B, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
pdb|3UUX|D Chain D, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
Length = 242
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 9/47 (19%)
Query: 2 ESCAQRIEKLKGEVR-------LMLDNYKEVDDYVDAL--HCLEIVD 39
E+ Q+ EKL G++ L+ DN K++DD +D L + LE+++
Sbjct: 187 ENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGLEVIE 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,616,799
Number of Sequences: 62578
Number of extensions: 127994
Number of successful extensions: 341
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 25
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)