Query 035819
Match_columns 122
No_of_seqs 120 out of 691
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ong_A 4S-limonene synthase; m 100.0 2.3E-37 7.9E-42 266.6 13.0 110 2-121 27-136 (543)
2 3m00_A Aristolochene synthase; 100.0 4.3E-37 1.5E-41 266.3 12.8 103 2-121 42-144 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1E-36 3.5E-41 264.1 12.7 106 2-121 40-146 (555)
4 3g4d_A (+)-delta-cadinene synt 100.0 1.2E-36 4.2E-41 263.6 11.9 104 2-121 46-149 (554)
5 1n1b_A (+)-bornyl diphosphate 100.0 2.8E-36 9.4E-41 260.5 12.8 109 2-121 31-140 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2.1E-36 7.1E-41 262.3 11.6 103 2-121 60-164 (569)
7 3sdr_A Alpha-bisabolene syntha 99.9 4.5E-28 1.5E-32 217.4 9.5 89 29-119 296-384 (817)
8 3p5p_A Taxadiene synthase; cla 99.9 1E-27 3.6E-32 213.8 9.7 89 29-119 244-332 (764)
9 3s9v_A Abietadiene synthase, c 99.9 1E-27 3.4E-32 214.4 9.4 89 29-119 268-356 (785)
10 3pya_A ENT-copalyl diphosphate 99.9 2.5E-27 8.7E-32 210.6 10.5 108 6-117 221-328 (727)
11 1pd3_A Nonstructural protein N 83.5 1.1 3.6E-05 28.0 3.1 41 6-55 16-56 (58)
12 1fi6_A EH domain protein REPS1 56.1 31 0.0011 21.3 5.5 76 13-103 9-84 (92)
13 1qjt_A EH1, epidermal growth f 51.5 44 0.0015 21.2 6.6 64 30-106 26-89 (99)
14 1c07_A Protein (epidermal grow 50.5 43 0.0015 20.8 7.8 61 29-103 24-86 (95)
15 2jq6_A EH domain-containing pr 42.9 82 0.0028 21.9 8.2 77 12-104 50-126 (139)
16 2e5n_A RNA polymerase II elong 33.2 83 0.0028 21.4 4.9 45 11-63 14-58 (100)
17 1b0n_B Protein (SINI protein); 32.2 58 0.002 19.9 3.6 26 31-59 12-37 (57)
18 3zyq_A Hepatocyte growth facto 31.9 43 0.0015 25.0 3.7 22 81-102 124-145 (226)
19 3fia_A Intersectin-1; EH 1 dom 30.7 1.3E+02 0.0044 20.6 8.0 63 29-104 46-108 (121)
20 1eh2_A EPS15; calcium binding, 30.7 1.1E+02 0.0038 19.8 7.3 75 13-103 15-89 (106)
21 2doa_A RNA polymerase II elong 30.5 66 0.0023 22.0 4.1 45 11-63 13-57 (104)
22 1q08_A Zn(II)-responsive regul 29.9 58 0.002 20.5 3.6 27 31-60 2-28 (99)
23 3vmx_A Voltage-gated hydrogen 27.0 23 0.0008 21.2 1.1 8 91-98 39-46 (48)
24 3sdr_A Alpha-bisabolene syntha 25.1 42 0.0014 30.2 2.9 20 1-20 49-68 (817)
25 3a2a_A Voltage-gated hydrogen 24.0 25 0.00086 21.8 0.9 9 91-99 46-54 (58)
26 1x5b_A Signal transducing adap 23.6 78 0.0027 22.5 3.6 22 81-102 131-152 (163)
No 1
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=2.3e-37 Score=266.60 Aligned_cols=110 Identities=35% Similarity=0.550 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQES 81 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~ 81 (122)
+.+.+++++||++||+|+... .+++++|+|||+||||||+|||++||+++|+.||+.|... .+|+..+ ..
T Consensus 27 ~~~~~~~~~Lk~~V~~~~~~~------~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~---~~~~~~~-~~ 96 (543)
T 2ong_A 27 DKHVIRASELVTLVKMELEKE------TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYY---KNPFPKE-ER 96 (543)
T ss_dssp THHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCC---CSSCCCC-CC
T ss_pred hHHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhccc---ccccccc-cC
Confidence 458899999999999999876 5899999999999999999999999999999999887432 1222222 46
Q ss_pred hHHHHHHHHHHHHhcCCccChhhhhcccCCCCcccccccc
Q 035819 82 LLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESLFN 121 (122)
Q Consensus 82 dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g~f~~~l~~ 121 (122)
|||+|||+|||||||||+||||||++|+|++|+|++++++
T Consensus 97 dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~ 136 (543)
T 2ong_A 97 DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSD 136 (543)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGG
T ss_pred CHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhh
Confidence 9999999999999999999999999999999999998764
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=4.3e-37 Score=266.30 Aligned_cols=103 Identities=39% Similarity=0.631 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQES 81 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~ 81 (122)
+.|.+|+++||++||.||.... .+++++|+|||+||||||+|||++||+++|+.||+.|.. ..
T Consensus 42 ~~~~~~~e~Lk~eVr~~l~~~~-----~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~------------~~ 104 (550)
T 3m00_A 42 EKYAKEIEALKEQTRNMLLATG-----MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN------------CN 104 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSS-----CCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC------------CS
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc------------CC
Confidence 4588899999999999997533 689999999999999999999999999999999987742 26
Q ss_pred hHHHHHHHHHHHHhcCCccChhhhhcccCCCCcccccccc
Q 035819 82 LLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESLFN 121 (122)
Q Consensus 82 dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g~f~~~l~~ 121 (122)
|||+|||+|||||||||+||||||++|+|++|+|++++.+
T Consensus 105 dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~ 144 (550)
T 3m00_A 105 DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLAS 144 (550)
T ss_dssp SHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGG
T ss_pred CHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchh
Confidence 9999999999999999999999999999999999999865
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1e-36 Score=264.10 Aligned_cols=106 Identities=34% Similarity=0.530 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCccc-chhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYV-DALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQE 80 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~-d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~ 80 (122)
+.|.+|+++||++||.||... . +++++|+|||+||||||+|||++||+++|+.||+..... ++ ..
T Consensus 40 ~~~~~~~e~Lk~eVr~~l~~~------~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~----~~----~~ 105 (555)
T 3n0f_A 40 EVYKDKAKKLEAEVRREINNE------KAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFD----GV----TK 105 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT------TSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHH----HH----TT
T ss_pred HHHHHHHHHHHHHHHHHHHhc------ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhcccc----cc----cc
Confidence 468899999999999999764 5 899999999999999999999999999999999741100 00 13
Q ss_pred chHHHHHHHHHHHHhcCCccChhhhhcccCCCCcccccccc
Q 035819 81 SLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESLFN 121 (122)
Q Consensus 81 ~dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g~f~~~l~~ 121 (122)
.|||+|||+|||||||||+||||||++|+|++|+|++++.+
T Consensus 106 ~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~ 146 (555)
T 3n0f_A 106 TSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKE 146 (555)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGG
T ss_pred CCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhh
Confidence 69999999999999999999999999999999999998865
No 4
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.2e-36 Score=263.59 Aligned_cols=104 Identities=37% Similarity=0.602 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQES 81 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~ 81 (122)
+.|.+|+++||++||.||.... .+++++|+|||+||||||+|||++||+++|+.||+. . .. ...
T Consensus 46 ~~~~~~~e~Lk~eVr~~l~~~~-----~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~-~~---------~~~ 109 (554)
T 3g4d_A 46 AETEKRHQQLKEEVRKMIVAPM-----ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-N-ND---------AEN 109 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-----SSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-C-CC---------TTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-c-CC---------CCC
Confidence 4688999999999999997533 689999999999999999999999999999999975 1 11 136
Q ss_pred hHHHHHHHHHHHHhcCCccChhhhhcccCCCCcccccccc
Q 035819 82 LLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHESLFN 121 (122)
Q Consensus 82 dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g~f~~~l~~ 121 (122)
|||+|||+|||||||||+||||||++|+|++|+|++++.+
T Consensus 110 dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~ 149 (554)
T 3g4d_A 110 DLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTS 149 (554)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCccccccc
Confidence 9999999999999999999999999999999999988754
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.8e-36 Score=260.49 Aligned_cols=109 Identities=33% Similarity=0.520 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQES 81 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~ 81 (122)
+.+.+++++||++||+|+... .+++++|+|||+||||||+|||++||+++|+.||+.+.... .......
T Consensus 31 ~~~~~~~~~Lk~~V~~~~~~~------~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~~~~~~~ 99 (549)
T 1n1b_A 31 ERHLDRKAELIVQVRILLKEK------MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFH-----NNEVEKM 99 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHH-----HCCCCSC
T ss_pred hHHHHHHHHHHHHHHHHHhcc------cCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhcccc-----ccccccC
Confidence 358899999999999999876 58999999999999999999999999999999998753210 0011246
Q ss_pred hHHHHHHHHHHHHhcCCccChhhhhcccCCCC-cccccccc
Q 035819 82 LLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQ-QYHESLFN 121 (122)
Q Consensus 82 dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g-~f~~~l~~ 121 (122)
|||+|||+|||||||||+||||||++|+|++| +|++++.+
T Consensus 100 dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~ 140 (549)
T 1n1b_A 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQ 140 (549)
T ss_dssp CHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGG
T ss_pred ChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhh
Confidence 99999999999999999999999999999999 99998764
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.1e-36 Score=262.30 Aligned_cols=103 Identities=36% Similarity=0.585 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHH-hhccCCCccccccccccc
Q 035819 2 ESCAQRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIY-NKRNSRRSSTYHAKENQE 80 (122)
Q Consensus 2 ~~~~~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~-~~~~~~~~~~~~~~~~~~ 80 (122)
+.+.+++++||++||+|+... .+++++|+|||+||||||+|||++||+++|+.|| +.+.. ..
T Consensus 60 ~~~~~~~~~Lk~~Vr~~~~~~------~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~-----------~~ 122 (569)
T 2j5c_A 60 EKHLMRAAGMIDQVKMMLQEE------VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI-----------DE 122 (569)
T ss_dssp --CHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS-----------CT
T ss_pred HHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc-----------cc
Confidence 357899999999999999876 5899999999999999999999999999999999 65322 24
Q ss_pred chHHHHHHHHHHHHhcCCccChhhhhcccCCCC-cccccccc
Q 035819 81 SLLYAASLEFRLLRQHGYDIHAHVVSDGAHLEQ-QYHESLFN 121 (122)
Q Consensus 81 ~dL~~~AL~FRLLRqhGy~VS~DVF~~F~d~~g-~f~~~l~~ 121 (122)
.|||+|||+|||||||||+||||||++|+|++| +|++++.+
T Consensus 123 ~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~ 164 (569)
T 2j5c_A 123 RDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVD 164 (569)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGG
T ss_pred CChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhh
Confidence 699999999999999999999999999999999 99998764
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=99.95 E-value=4.5e-28 Score=217.39 Aligned_cols=89 Identities=36% Similarity=0.490 Sum_probs=77.0
Q ss_pred cchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHHHHhcCCccChhhhhcc
Q 035819 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDG 108 (122)
Q Consensus 29 ~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DVF~~F 108 (122)
.+++++|+|||+||||||+|||++||+++|+.||+.|...+ .++++.+...|||+|||+|||||||||+||||||++|
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g--i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 373 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERG--IGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNF 373 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTC--CCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc--cccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHH
Confidence 47899999999999999999999999999999999886532 2344444457999999999999999999999999999
Q ss_pred cCCCCcccccc
Q 035819 109 AHLEQQYHESL 119 (122)
Q Consensus 109 ~d~~g~f~~~l 119 (122)
+|++|+|+.++
T Consensus 374 ~d~~g~F~~~~ 384 (817)
T 3sdr_A 374 KDANGKFICST 384 (817)
T ss_dssp BCC--CBCCCS
T ss_pred hhcCCCceech
Confidence 99999999875
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=99.94 E-value=1e-27 Score=213.80 Aligned_cols=89 Identities=29% Similarity=0.508 Sum_probs=78.1
Q ss_pred cchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHHHHhcCCccChhhhhcc
Q 035819 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDG 108 (122)
Q Consensus 29 ~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DVF~~F 108 (122)
.+++++|+|||+||||||+|||++||+++|+.||+.|...+ .++++.+...|||+|||+|||||||||+||||||++|
T Consensus 244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g--i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 321 (764)
T 3p5p_A 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERG--IGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNF 321 (764)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTC--CCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc--cccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhh
Confidence 47899999999999999999999999999999999876532 2333344457999999999999999999999999999
Q ss_pred cCCCCcccccc
Q 035819 109 AHLEQQYHESL 119 (122)
Q Consensus 109 ~d~~g~f~~~l 119 (122)
+|++|+|+.++
T Consensus 322 ~d~~g~F~~~~ 332 (764)
T 3p5p_A 322 KDENGRFFSSA 332 (764)
T ss_dssp BCTTSCBCSCT
T ss_pred hcCCCCccccc
Confidence 99999998753
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=99.94 E-value=1e-27 Score=214.42 Aligned_cols=89 Identities=29% Similarity=0.478 Sum_probs=78.6
Q ss_pred cchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHHHHhcCCccChhhhhcc
Q 035819 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVSDG 108 (122)
Q Consensus 29 ~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DVF~~F 108 (122)
.+++++|+|||+||||||+|||++||+++|+.||+.|...+ .+++.++...|||+|||+|||||||||+||||||++|
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g--i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 345 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERG--IGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTF 345 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTC--CCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc--ccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 47899999999999999999999999999999998876532 2333344457999999999999999999999999999
Q ss_pred cCCCCcccccc
Q 035819 109 AHLEQQYHESL 119 (122)
Q Consensus 109 ~d~~g~f~~~l 119 (122)
+|++|+|+.++
T Consensus 346 ~d~~g~F~~~~ 356 (785)
T 3s9v_A 346 RDENGEFFCFL 356 (785)
T ss_dssp BCTTSCBCSST
T ss_pred HhcCCCeeecc
Confidence 99999999876
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.94 E-value=2.5e-27 Score=210.55 Aligned_cols=108 Identities=31% Similarity=0.380 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHH
Q 035819 6 QRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYA 85 (122)
Q Consensus 6 ~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~ 85 (122)
+..+.|+..|+++....+ -+=..+++++|+|||+||||||+|||++||+++|+.||+.|...+ .+++......|||+
T Consensus 221 ~~l~YL~~~v~k~~g~VP-~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g--~~~~~~~~~~DL~~ 297 (727)
T 3pya_A 221 NCLEYLRNAVKRFNGGVP-NVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNG--ICWARCSHVQDIDD 297 (727)
T ss_dssp HHHHHHHHHHHHTTTCCC-SSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTC--CCSSSSCSCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCC-CCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcC--cccccCCCCCCHHH
Confidence 456678888887643211 000147899999999999999999999999999999999876432 23333344579999
Q ss_pred HHHHHHHHHhcCCccChhhhhcccCCCCcccc
Q 035819 86 ASLEFRLLRQHGYDIHAHVVSDGAHLEQQYHE 117 (122)
Q Consensus 86 ~AL~FRLLRqhGy~VS~DVF~~F~d~~g~f~~ 117 (122)
|||+|||||||||+||||||++|+ ++|.|+.
T Consensus 298 tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~ 328 (727)
T 3pya_A 298 TAMAFRLLRQHGYQVSADVFKNFE-KEGEFFC 328 (727)
T ss_dssp HHHHHHHHHHTTCCCCGGGGGGGE-ETTEECS
T ss_pred HHHHHHHHHhCCCCCCHHHHHhcc-CCCcccc
Confidence 999999999999999999999999 8899984
No 11
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=83.46 E-value=1.1 Score=27.97 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHH
Q 035819 6 QRIEKLKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIK 55 (122)
Q Consensus 6 ~~~~~LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~ 55 (122)
+.+.-|.+|||+.|..+ .+.++++-++.+||-| ---+.||.
T Consensus 16 EeIRwlIeE~Rh~Lk~T------ensfeQItfmqalQLl---leveqeir 56 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKIT------ENSFEQITFMQALQLL---LEVEQEIR 56 (58)
T ss_dssp HHHHHHHHHHHHTCCCC------TTSHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHH---HHHHHHHh
Confidence 34556778888888776 6899999999999875 23344444
No 12
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=56.12 E-value=31 Score=21.32 Aligned_cols=76 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHH
Q 035819 13 GEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRL 92 (122)
Q Consensus 13 eeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRL 92 (122)
++++.+|...- .+.+..+..=++...+.++|++ +.|+.+++..+ ..+..+ ....+=+..++.-.-
T Consensus 9 ~~~~~~F~~~D--~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG------~i~~~EF~~~~~~~~ 73 (92)
T 1fi6_A 9 QYYVNQFKTIQ--PDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELS----DFDKDG------ALTLDEFCAAFHLVV 73 (92)
T ss_dssp HHHHHHHTTTC--CSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHH----CTTCSS------EEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC------CCCHHHHHHHHHHHH
Confidence 45566664320 0113456666778889999976 56666665433 211100 112222233344344
Q ss_pred HHhcCCccChh
Q 035819 93 LRQHGYDIHAH 103 (122)
Q Consensus 93 LRqhGy~VS~D 103 (122)
.+|.|+.+++.
T Consensus 74 ~~~~g~~lp~~ 84 (92)
T 1fi6_A 74 ARKNGYDLPEK 84 (92)
T ss_dssp HHHHSCCCCCC
T ss_pred HHHcCCCCCcc
Confidence 56889998864
No 13
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=51.47 E-value=44 Score=21.23 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=40.5
Q ss_pred chhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHHHHhcCCccChhhhh
Q 035819 30 DALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHVVS 106 (122)
Q Consensus 30 d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DVF~ 106 (122)
..+..=++...+.++|++ +.|+.+++..+ ..+..+ ....+=+..++.---+.|.|+.++++...
T Consensus 26 G~Is~~el~~~l~~~~l~---~~~l~~i~~~~----D~d~dG------~i~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLP---DLILGKIWDLA----DTDGKG------VLSKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp SCCCSHHHHHHHHTSSSC---HHHHHHHHHHH----CCSSSS------SCCSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred CcCCHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC------cCCHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 445556677788999986 56666665443 211100 12334456778888889999999987654
No 14
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.54 E-value=43 Score=20.84 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=33.8
Q ss_pred cchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccc-cchHHHHHHHHHHHH-hcCCccChh
Q 035819 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQ-ESLLYAASLEFRLLR-QHGYDIHAH 103 (122)
Q Consensus 29 ~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~-~~dL~~~AL~FRLLR-qhGy~VS~D 103 (122)
+..+..=++...+.++|++ +.|+..++..+ ..+..+ .. ..++. .++.-.-.+ |.|+.++..
T Consensus 24 dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG------~i~~~EF~-~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLP---STLLAHIWSLC----DTKDCG------KLSKDQFA-LAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SSEECHHHHHHHHHTTTCC---HHHHHHHHHHH----CTTCSS------SEETTTHH-HHHHHHHHHHTSCCCCCSS
T ss_pred CCcEeHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC------cCCHHHHH-HHHHHHHHHHHcCCCCCCc
Confidence 3456666788889999976 56666665543 111100 11 23443 333333334 899988764
No 15
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=42.95 E-value=82 Score=21.91 Aligned_cols=77 Identities=5% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHH
Q 035819 12 KGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFR 91 (122)
Q Consensus 12 keeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FR 91 (122)
+++.+.+|... ++.+..+..=++...|.++|++ +.|+.+++..+ ..+..+ ....+=+..++.--
T Consensus 50 ~~~l~~~F~~f---Dd~dG~Is~~El~~~l~~~gl~---~~el~~I~~~~----D~d~dG------~Ld~~EF~~am~li 113 (139)
T 2jq6_A 50 KPTYDEIFYTL---SPVNGKITGANAKKEMVKSKLP---NTVLGKIWKLA----DVDKDG------LLDDEEFALANHLI 113 (139)
T ss_dssp HHHHHHHHHHS---CCSSSEEEHHHHHHHHHHTTCC---HHHHHHHHHHH----CSSCCS------EEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCCeECHHHHHHHHHHhCcC---HHHHHHHHHHh----CCCCCC------cCcHHHHHHHHHHH
Confidence 34556666543 1114456677788899999987 45555554432 221100 12233345666666
Q ss_pred HHHhcCCccChhh
Q 035819 92 LLRQHGYDIHAHV 104 (122)
Q Consensus 92 LLRqhGy~VS~DV 104 (122)
-+++.|+.+++..
T Consensus 114 ~~~~~G~~lP~~L 126 (139)
T 2jq6_A 114 KVKLEGHELPADL 126 (139)
T ss_dssp HHHHTTSCCCSCC
T ss_pred HHHHcCCCCCccc
Confidence 6789999998754
No 16
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.18 E-value=83 Score=21.37 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHh
Q 035819 11 LKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYN 63 (122)
Q Consensus 11 LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~ 63 (122)
+++.|=++|. ..|+.+-+|+..|++=||+.-=.+.|..+|+.|-.
T Consensus 14 lReRvIHLLA--------LkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~ 58 (100)
T 2e5n_A 14 YRDRVIHLLA--------LKAYKKPELLARLQKDGVNQKDKNSLGAILQQVAN 58 (100)
T ss_dssp HHHHHHHHHH--------HSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHH--------cCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHh
Confidence 5666667765 34566789999999999999888888999998843
No 17
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=32.19 E-value=58 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHhCCccchHHHHHHHHH
Q 035819 31 ALHCLEIVDNLQRLGVSYHFEGEIKRFLN 59 (122)
Q Consensus 31 ~~~~L~lID~LqRLGI~yhFe~EI~~~L~ 59 (122)
..+.+.||...+++|++ -+||++.|.
T Consensus 12 d~ewl~LI~~Ak~lGls---leEIrefL~ 37 (57)
T 1b0n_B 12 DQEWVELMVEAKEANIS---PEEIRKYLL 37 (57)
T ss_dssp CHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHH
Confidence 46889999999999998 478888884
No 18
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.89 E-value=43 Score=25.01 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHhcCCccCh
Q 035819 81 SLLYAASLEFRLLRQHGYDIHA 102 (122)
Q Consensus 81 ~dL~~~AL~FRLLRqhGy~VS~ 102 (122)
.+|..++=.++.|+..||..++
T Consensus 124 ~~l~~i~~~Y~~Lk~~G~~FP~ 145 (226)
T 3zyq_A 124 PKYKVVQDTYQIMKVEGHVFPE 145 (226)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCC
T ss_pred cchHHHHHHHHHHHhcCCCccc
Confidence 5677788889999999999875
No 19
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.75 E-value=1.3e+02 Score=20.58 Aligned_cols=63 Identities=10% Similarity=0.242 Sum_probs=38.9
Q ss_pred cchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHHHHhcCCccChhh
Q 035819 29 VDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLLRQHGYDIHAHV 104 (122)
Q Consensus 29 ~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV 104 (122)
+..+..-++.+.+.++|++ .+.|.+|+..-..+..+ ....+=+.+||..--+++.|+.+++-+
T Consensus 46 dG~Isg~elr~~~~~sgLp-------~~~L~~Iw~laD~d~dG------~Ld~~EF~~aM~Li~~~~~G~~lP~~L 108 (121)
T 3fia_A 46 SGFITGDQARNFFFQSGLP-------QPVLAQIWALADMNNDG------RMDQVEFSIAMKLIKLKLQGYQLPSAL 108 (121)
T ss_dssp TTBEEHHHHHHHHGGGCCC-------HHHHHHHHHHHCTTCSS------EECHHHHHHHHHHHHHHHTTCCCCSSC
T ss_pred CCeECHHHHHHHHHHcCCC-------HHHHHHHHHHHcCCCCC------cCCHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 4456667888999999998 34466666543322100 112234456666666788999998654
No 20
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=30.67 E-value=1.1e+02 Score=19.78 Aligned_cols=75 Identities=7% Similarity=-0.020 Sum_probs=42.4
Q ss_pred HHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHhhccCCCcccccccccccchHHHHHHHHHH
Q 035819 13 GEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRL 92 (122)
Q Consensus 13 eeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~~~~~~~dL~~~AL~FRL 92 (122)
++.+.+|...- ..+..+..=++...+.++|++ +.|+.+++..+ ..+..+ ....+=+..++..--
T Consensus 15 ~~~~~~F~~~D---~~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~----D~d~dG------~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 15 AKYDAIFDSLS---PVNGFLSGDKVKPVLLNSKLP---VDILGRVWELS----DIDHDG------MLDRDEFAVAMFLVY 78 (106)
T ss_dssp HHHHHHHTTSC---CSSSCCBHHHHHHHHHTTTCC---HHHHHHHHHHH----CSSCSS------BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHH----cCCCCC------cCcHHHHHHHHHHHH
Confidence 45566664321 014556667788889999987 55665554432 211100 122233455666666
Q ss_pred HHhcCCccChh
Q 035819 93 LRQHGYDIHAH 103 (122)
Q Consensus 93 LRqhGy~VS~D 103 (122)
.++.|+.+++.
T Consensus 79 ~~~~g~~lP~~ 89 (106)
T 1eh2_A 79 CALEKEPVPMS 89 (106)
T ss_dssp HHHHTCCCCSS
T ss_pred HHHcCCCCCCC
Confidence 77889988864
No 21
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=30.48 E-value=66 Score=22.02 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcccCCcccchhhhHHHHHHHHHhCCccchHHHHHHHHHHHHh
Q 035819 11 LKGEVRLMLDNYKEVDDYVDALHCLEIVDNLQRLGVSYHFEGEIKRFLNSIYN 63 (122)
Q Consensus 11 LkeeVr~ml~~~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i~~ 63 (122)
+++.|=++|. ..|+.+-+|+..|++=||+--=.+.|..+|+.|-.
T Consensus 13 lReRvIHLLA--------Lkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~ 57 (104)
T 2doa_A 13 FRDRVLHLLA--------LRPYRKAELLLRLQKDGLTQADKDALDGLLQQVAN 57 (104)
T ss_dssp HHHHHHHHHH--------HSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSE
T ss_pred HHHHHHHHHH--------cCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5667777775 34566789999999999999888888999998843
No 22
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=29.92 E-value=58 Score=20.48 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHhCCccchHHHHHHHHHH
Q 035819 31 ALHCLEIVDNLQRLGVSYHFEGEIKRFLNS 60 (122)
Q Consensus 31 ~~~~L~lID~LqRLGI~yhFe~EI~~~L~~ 60 (122)
.++.|.+|-.++.||++= +||++.|..
T Consensus 2 dl~rL~~I~~lr~lGfsL---~eIk~~l~~ 28 (99)
T 1q08_A 2 DLQRLKFIRHARQLGFSL---ESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH---HHHHHHHHH
Confidence 356789999999999885 678887753
No 23
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.99 E-value=23 Score=21.22 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=5.9
Q ss_pred HHHHhcCC
Q 035819 91 RLLRQHGY 98 (122)
Q Consensus 91 RLLRqhGy 98 (122)
+||||||.
T Consensus 39 ~LLkqHgl 46 (48)
T 3vmx_A 39 KLLKQNGL 46 (48)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 67888874
No 24
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=25.14 E-value=42 Score=30.22 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q 035819 1 GESCAQRIEKLKGEVRLMLD 20 (122)
Q Consensus 1 ~~~~~~~~~~LkeeVr~ml~ 20 (122)
++.|.+++++|+++||.||.
T Consensus 49 ~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 49 DSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc
Confidence 35788999999999999997
No 25
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.00 E-value=25 Score=21.78 Aligned_cols=9 Identities=67% Similarity=0.988 Sum_probs=5.3
Q ss_pred HHHHhcCCc
Q 035819 91 RLLRQHGYD 99 (122)
Q Consensus 91 RLLRqhGy~ 99 (122)
+||||||.-
T Consensus 46 ~LLkqHgl~ 54 (58)
T 3a2a_A 46 KLLRQHGLL 54 (58)
T ss_dssp HHHHHC---
T ss_pred HHHHHcCCc
Confidence 689999863
No 26
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=23.59 E-value=78 Score=22.51 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHhcCCccCh
Q 035819 81 SLLYAASLEFRLLRQHGYDIHA 102 (122)
Q Consensus 81 ~dL~~~AL~FRLLRqhGy~VS~ 102 (122)
.+|..+.-.++.|+..||..++
T Consensus 131 ~~l~~i~~~Y~~Lk~~G~~FP~ 152 (163)
T 1x5b_A 131 PQFSLISATIKSMKEEGITFPP 152 (163)
T ss_dssp STTHHHHHHHHHHHTTTCCCCC
T ss_pred cccHHHHHHHHHHHHcCCCCCC
Confidence 4688888899999999998765
Done!