BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035820
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 32/350 (9%)
Query: 24 CGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEV 74
V V+S ++P E+ K +L S + +E P +DL+ DE
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 75 ATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLK--AQRMPGN 132
+ +K A + G +INHGI A L+ + FF L K K + G
Sbjct: 62 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 133 MWGYSGAHADRFCSKLPWKET---LSFGFD--DCSLNPMVVNFFNSNIGKDFEQTGIIYQ 187
+ GY A+ +L W++ L++ + D S+ P + + E T
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-------IEATS---- 170
Query: 188 KYCEAMKCLSLGITELLAISLGIN-DRLHYREF--FEEGCSIMRCNNYPTCQASDLALGT 244
+Y + ++ L+ + + L++ LG+ DRL +E EE M+ N YP C +LALG
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLE-KEVGGLEELLLQMKINYYPKCPQPELALGV 229
Query: 245 GPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHR 304
H D ++LT + + V GL++F +W + + D++V++IGDT LSNGKY S LHR
Sbjct: 230 EAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHR 289
Query: 305 AVVNRFTERRSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE 353
+VN+ R S A F P +DK+V +P +++ + +P T++ +E
Sbjct: 290 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 32/350 (9%)
Query: 24 CGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEV 74
V V+S ++P E+ K +L S + +E P +DL+ DE
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60
Query: 75 ATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLK--AQRMPGN 132
+ +K A + G +INHGI A L+ + FF L K K + G
Sbjct: 61 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120
Query: 133 MWGYSGAHADRFCSKLPWKET---LSFGFD--DCSLNPMVVNFFNSNIGKDFEQTGIIYQ 187
+ GY A+ +L W++ L++ + D S+ P + + E T
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-------IEATS---- 169
Query: 188 KYCEAMKCLSLGITELLAISLGIN-DRLHYREF--FEEGCSIMRCNNYPTCQASDLALGT 244
+Y + ++ L+ + + L++ LG+ DRL +E EE M+ N YP C +LALG
Sbjct: 170 EYAKCLRLLATKVFKALSVGLGLEPDRLE-KEVGGLEELLLQMKINYYPKCPQPELALGV 228
Query: 245 GPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHR 304
H D ++LT + + V GL++F +W + + D++V++IGDT LSNGKY S LHR
Sbjct: 229 EAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHR 288
Query: 305 AVVNRFTERRSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE 353
+VN+ R S A F P +DK+V +P +++ + +P T++ +E
Sbjct: 289 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 162/350 (46%), Gaps = 32/350 (9%)
Query: 24 CGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEV 74
V V+S ++P E+ K +L S + +E P +DL+ DE
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 75 ATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLK--AQRMPGN 132
+ +K A + G +INHGI A L + FF L K K + G
Sbjct: 62 IRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 133 MWGYSGAHADRFCSKLPWKET---LSFGFD--DCSLNPMVVNFFNSNIGKDFEQTGIIYQ 187
+ GY A+ +L W++ L++ + D S+ P + + E T
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-------IEATS---- 170
Query: 188 KYCEAMKCLSLGITELLAISLGIN-DRLHYREF--FEEGCSIMRCNNYPTCQASDLALGT 244
+Y + ++ L+ + + L++ LG+ DRL +E EE + N YP C +LALG
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLE-KEVGGLEELLLQXKINYYPKCPQPELALGV 229
Query: 245 GPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHR 304
H D ++LT + + V GL++F +W + + D++V +IGDT LSNGKY S LHR
Sbjct: 230 EAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHR 289
Query: 305 AVVNRFTERRSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE 353
+VN+ R S A F P +DK+V +P + + + +P T++ +E
Sbjct: 290 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 27/287 (9%)
Query: 75 ATQRAA--RIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGN 132
+RAA IKDAC + GFF+++NHGI + +K ++ K
Sbjct: 14 GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKA 73
Query: 133 MWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGK--DF-EQTGIIYQKY 189
+ G D W+ T + + SNI + D E+ + + +
Sbjct: 74 LEGVQAEVTDX-----DWESTF-----------FLKHLPISNISEVPDLDEEYREVXRDF 117
Query: 190 CEAMKCLSLGITELLAISLGINDRLHYREFF-EEGCSI-MRCNNYPTCQASDLALGTGPH 247
+ ++ L+ + +LL +LG+ F+ +G + + +NYP C DL G H
Sbjct: 118 AKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 248 CDPTSLTILHQD-QVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAV 306
D + +L QD +V GL++ + +W V P ++V+N+GD ++NGKY S HR +
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVI 237
Query: 307 VNRFTERRSLAFFLCPREDKVVRPPQDLI---CRQGTRIYPDFTWSD 350
+ R SLA F P D V+ P L+ + ++YP F + D
Sbjct: 238 AQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD 284
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 20/295 (6%)
Query: 78 RAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGY- 136
R A+ + + +GF + ++ +D + I AA D FF LP K + + G GY
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 137 -----SGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCE 191
+ AD + K W N + + I +Y
Sbjct: 81 PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYN---- 136
Query: 192 AMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPT 251
++ + E +A L + +R ++ ++G S++R +YP + G H D
Sbjct: 137 SLDGXGGKVLEAIATYLKL-ERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDIN 195
Query: 252 SLTILHQDQVGGLEVF-ANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRF 310
++T+L + GGLEV + +W + P LVINIGD L+N S +HR VVN
Sbjct: 196 TITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPP 254
Query: 311 TERR-----SLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYR 360
ERR S FFL D ++ Q+ + + YP+ +D EF Q+ R
Sbjct: 255 PERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITAD--EFLQQRLR 307
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 121/309 (39%), Gaps = 61/309 (19%)
Query: 61 PVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPT 120
P +D+ F D+ A R A+ I A GFF +NHGI+ +S
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ------------K 57
Query: 121 SRKLKAQRMPGNMW-----GYSGAHADR----FCSKLPWKETL-SFGFDDCSLNPMVVNF 170
+++ P W Y+ H D+ + +P K+ + SF C LNP NF
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESF----CYLNP---NF 110
Query: 171 -------------FNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELL----AISLGINDR 213
N+ D E +Q + E G++ L A++LG +
Sbjct: 111 TPDHPRIQAKTPTHEVNVWPD-ETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEEN 169
Query: 214 LHYREFFEE----GCSIMR---CNNYPTCQASDLALGTGP----HCDPTSLTILHQDQVG 262
R F + ++R + YP A GT H D + +T+L+Q V
Sbjct: 170 FFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQ 229
Query: 263 GLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAV-VNRFTERRSLAFFLC 321
L+V +Q + D +IN G L+N Y + +HR VN ER+SL FF+
Sbjct: 230 NLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN--AERQSLPFFVN 287
Query: 322 PREDKVVRP 330
D V+ P
Sbjct: 288 LGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 121/309 (39%), Gaps = 61/309 (19%)
Query: 61 PVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPT 120
P +D+ F D+ A R A+ I A GFF +NHGI+ +S
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ------------K 57
Query: 121 SRKLKAQRMPGNMW-----GYSGAHADR----FCSKLPWKETL-SFGFDDCSLNPMVVNF 170
+++ P W Y+ H D+ + +P K+ + SF C LNP NF
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESF----CYLNP---NF 110
Query: 171 -------------FNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELL----AISLGINDR 213
N+ D E +Q + E G++ L A++LG +
Sbjct: 111 TPDHPRIQAKTPTHEVNVWPD-ETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEEN 169
Query: 214 LHYREFFEE----GCSIMR---CNNYPTCQASDLALGTGP----HCDPTSLTILHQDQVG 262
R F + ++R + YP A GT H D + +T+L+Q V
Sbjct: 170 FFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQ 229
Query: 263 GLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAV-VNRFTERRSLAFFLC 321
L+V +Q + D +IN G L+N Y + +HR VN ER+SL FF+
Sbjct: 230 NLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN--AERQSLPFFVN 287
Query: 322 PREDKVVRP 330
D V+ P
Sbjct: 288 LGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 225 SIMRCNNYP--TCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANN-RWQSVRPRDDA 281
+++R +YP T A+ H D +T+L GL+V A + W V
Sbjct: 150 TLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGN 209
Query: 282 LVINIGDTFTALSNGKYMSCLHRAV----VNRFTERRSLAFFLCPREDKVV 328
++INIGD S+G + S HR + ++ R SL FL P V+
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|3HMQ|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Nad
Synthetase (Nade) From Salmonella Typhimurium Lt2 In
Complex With Nad(+)
Length = 275
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 48 KGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDA 102
KG +++S L E ++L F RG+E A +R A +HG +H +A
Sbjct: 112 KGAVLASEQALREAGIELSDFVRGNEKARERXKAQYSIAGXTHGVVVGTDHAAEA 166
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 48 KGDLVSSHGELMEPVVDLEGFFRGDEVAT-----QRAARIIKDACMSHGFFQVI 96
K D S G+ + D+ G+ G + T RA R KD C H F+Q++
Sbjct: 210 KNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,926,529
Number of Sequences: 62578
Number of extensions: 497198
Number of successful extensions: 946
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 15
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)