Query 035822
Match_columns 471
No_of_seqs 128 out of 236
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2481 Protein required for n 100.0 1E-163 2E-168 1264.5 23.9 429 5-445 1-447 (570)
2 COG5163 NOP7 Protein required 100.0 1E-144 2E-149 1096.7 24.2 430 5-440 1-463 (591)
3 PF06732 Pescadillo_N: Pescadi 100.0 4E-115 9E-120 858.5 22.9 253 8-263 1-258 (281)
4 PF00533 BRCT: BRCA1 C Terminu 99.0 3.3E-10 7.3E-15 89.6 4.0 69 325-401 2-78 (78)
5 smart00292 BRCT breast cancer 98.7 1.4E-08 3E-13 78.6 3.9 70 327-404 1-80 (80)
6 cd00027 BRCT Breast Cancer Sup 98.4 2E-07 4.4E-12 70.4 4.2 63 331-401 1-71 (72)
7 KOG0966 ATP-dependent DNA liga 97.6 3E-05 6.5E-10 86.8 2.7 91 321-419 626-726 (881)
8 PLN03122 Poly [ADP-ribose] pol 90.2 0.32 7E-06 56.2 4.5 87 324-419 185-282 (815)
9 KOG0966 ATP-dependent DNA liga 87.2 0.25 5.3E-06 56.5 1.0 80 328-412 790-880 (881)
10 PF12738 PTCB-BRCT: twin BRCT 80.0 1.1 2.4E-05 34.6 1.7 47 342-396 13-63 (63)
11 KOG3548 DNA damage checkpoint 76.8 0.75 1.6E-05 53.5 -0.2 91 324-414 921-1035(1176)
12 KOG2043 Signaling protein SWIF 74.3 1.6 3.5E-05 51.2 1.6 72 334-414 662-738 (896)
13 KOG3226 DNA repair protein [Re 69.9 2.8 6E-05 44.7 2.0 88 320-417 309-404 (508)
14 PLN03123 poly [ADP-ribose] pol 69.1 3.9 8.5E-05 48.5 3.2 83 324-415 389-481 (981)
15 PF12728 HTH_17: Helix-turn-he 62.8 7.6 0.00017 28.8 2.7 46 19-70 1-46 (51)
16 PF00867 XPG_I: XPG I-region; 54.0 5.7 0.00012 33.6 0.8 30 15-44 63-92 (94)
17 cd04762 HTH_MerR-trunc Helix-T 49.5 21 0.00045 25.0 3.0 47 20-71 1-47 (49)
18 TIGR01764 excise DNA binding d 47.0 14 0.00031 26.2 1.8 45 19-69 1-45 (49)
19 PF15101 DUF4557: Domain of un 46.4 10 0.00022 37.5 1.2 86 329-421 1-92 (212)
20 KOG4362 Transcriptional regula 41.5 37 0.0008 39.0 4.8 37 323-359 582-621 (684)
21 KOG1929 Nucleotide excision re 39.5 16 0.00034 42.7 1.6 82 325-416 100-190 (811)
22 cd04761 HTH_MerR-SF Helix-Turn 33.1 58 0.0013 23.3 3.3 46 20-70 1-46 (49)
23 PF02042 RWP-RK: RWP-RK domain 32.1 37 0.00079 26.6 2.1 34 20-54 16-49 (52)
24 PF12989 DUF3873: Domain of un 30.6 29 0.00062 28.8 1.3 38 118-169 17-66 (69)
25 PRK14562 haloacid dehalogenase 29.7 1.6E+02 0.0035 28.7 6.6 96 71-174 19-132 (204)
26 KOG2908 26S proteasome regulat 25.2 3E+02 0.0066 29.6 8.0 121 67-203 217-342 (380)
27 PRK06195 DNA polymerase III su 23.5 1.2E+02 0.0026 31.1 4.7 45 326-378 218-265 (309)
28 PRK06063 DNA polymerase III su 22.7 1.1E+02 0.0023 31.7 4.2 47 325-379 229-277 (313)
No 1
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=100.00 E-value=1.1e-163 Score=1264.50 Aligned_cols=429 Identities=46% Similarity=0.812 Sum_probs=377.3
Q ss_pred CCCCCCCccCcccccccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCC-----CceeEecchhhhhhhchHHHHH
Q 035822 5 YRPAGKKKEGNAAKYITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGN-----HQTYYHLKDVSFIRHDPILEDL 79 (471)
Q Consensus 5 ~~~~kK~~~G~a~~yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~-----~ktyY~~KDI~~L~HePil~kf 79 (471)
+|.|||+++|+|+|||||+||+|||||||+|||||||||||||||||||+|+| ++||||+|||+||+||||++||
T Consensus 1 ~r~kkk~~~G~A~~YiTr~qAlKkLQLsLaDFRRLCIlKGIYP~EPKhkkK~NKGSta~~tfY~~kDI~fLlHEpIv~Kf 80 (570)
T KOG2481|consen 1 GREKKKYERGSATNYITRSQALKKLQLSLADFRRLCILKGIYPREPKHKKKVNKGSTAAQTFYYIKDIRFLLHEPIVNKF 80 (570)
T ss_pred CCccccccccchhhhhhHHHHHHHhcccHHHHhhHhhhccccCCCcchhhhcccCCCCcceeeeHhHHHHHhhhHHHHHH
Confidence 47889999999999999999999999999999999999999999999999998 6999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhccHHHHHHhhhcCCCCCccchhhccCCChHHHHhCCCchhHHHHHHhhCCCCCCcccchhhhhh
Q 035822 80 RAKSAYRKKIIKAKAKRNKELADILKNRQPEIKLDRLVQERYPHFIDALRDLDDPLTLVHLFAALPASDRLKIEVKRVHN 159 (471)
Q Consensus 80 Re~K~~~kKl~ka~~r~~~~~ak~l~~~~P~y~LdhiIKERYPtF~dALrDLDDaLs~l~LFa~lp~~~~~~i~~~~i~~ 159 (471)
||+|+|+||++||.|+|+...+++|.+|+|.|+||||||||||||+|||||||||||||||||+||+++ .++.++|++
T Consensus 81 reyKvf~rKl~ka~~k~e~~~~k~L~~~~p~Y~lDhiIKERyptf~dAlrDlddaLsmlfLfs~lP~td--~~~~~~v~~ 158 (570)
T KOG2481|consen 81 REYKVFARKLKKAYGKGEEETLRRLLDNKPTYKLDHIIKERYPTFIDALRDLDDALSMLFLFSTLPSTD--RLHVKIVAL 158 (570)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhcCCccchhhHHHHhcCcHHHHHHHHHHHHHHHHHHhhCCccc--cchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred hhHHHHHHHHHHHHhcccceeEEEeeeeEEEEEEcCeeEEEEcccCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 035822 160 CRKLSHEWQAYISRTHKLRKVFISVKGVYYQAEVEGQKITWLTPHGMQQVLPDDDVVYDVLLSFLEFYETLLAFVNFKLY 239 (471)
Q Consensus 160 c~rL~~Ef~~yv~~t~~LrKvFiSIKGiYyQAeI~Gq~ItWlvP~~f~~~~p~~dVDfrVm~tFlEFY~tLl~FVnfkLY 239 (471)
|+|||+|||||||++++|||||+|||||||||||.||+|||+|||.|++.+|+ ||||+||+||||||+|||||||||||
T Consensus 159 crrlt~EF~hYVi~s~aLrkvF~SiKGiYyQAei~gqkitWivP~~f~~~~~t-dVDf~vm~tF~EFY~~llgFvnfkLy 237 (570)
T KOG2481|consen 159 CRRLTAEFMHYVIASSALRKVFLSIKGIYYQAEILGQKITWIVPYAFVELHPT-DVDFRVMPTFLEFYTTLLGFVNFKLY 237 (570)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcceehhhhhcccceEEEeecCCCCcCcc-ccccchhhhHHHHHHHHHhhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhcCccCCCCCChhHHHhH---HH-HHHHHhhhc-cCCCCcc---hhh-hhhhHH-HHHHHHHhhccCCCCCCchhhhhh
Q 035822 240 HSINVKYPPILDPQLEASA---AE-LYALARYFD-ANSRPSE---KVE-ATQEEE-SELRLAQLQHQLPSNEPGALMQLV 309 (471)
Q Consensus 240 ~~~nl~YPPk~d~~~~~~~---~~-l~~l~~~~~-~~~~~~~---~~~-~~~~e~-~e~~i~~~~~~~~~~~~~~~~~~~ 309 (471)
+++||.|||++|....+.. ++ ....+..+. ....... ... ...+|+ +|..++++ ++.++..
T Consensus 238 q~l~l~YPpkld~~~~~~~k~~e~~~a~~~e~~~~~~a~~das~l~~~~v~~~ee~~e~e~def---------~~~~~~~ 308 (570)
T KOG2481|consen 238 QDLNLSYPPKLDGQAQAEVKASEGTYALDSESVMEDLAALDASLLARSVVPETEEEEEPELDEF---------PANGELS 308 (570)
T ss_pred hhccccCCCcccchhhhhhhhcccchhhhhhhhhhhhhccchHHhhhccchhhhhhcccccccc---------ccccchh
Confidence 9999999999998532111 11 111111000 0000000 000 011111 12222222 2222333
Q ss_pred cccccccccchhhhhhcCCCCCceEEEecCCchhhHHHHhHhcCceeecC--CCCCCCCCCCCCceEEEecCCCCCCccC
Q 035822 310 KDAADENEEDEDTKECKNLFKNMRFFLSREVPRESMLFVIPAFGGTVSWE--GEGAPFSETDQSITHQIVDRPTQGHVYL 387 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~LF~g~~FfI~REvPre~LefiIrs~GG~V~wd--~~~~~~~e~d~~ITH~IvDRP~~~~~~~ 387 (471)
...+...++.+..++.++||+||+|||+|||||++|+|||+||||+|+|+ +.|+||+++|++|||||||||.+..++.
T Consensus 309 ~~~~~~~~e~~~~s~~kslF~glkFfl~reVPresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~ 388 (570)
T KOG2481|consen 309 AQEDKMRQELEEQSSHKSLFSGLKFFLNREVPRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVI 388 (570)
T ss_pred hhHHHHHhhhhhhhhHHHHhhcceeeeeccCchHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccceee
Confidence 44566778888999999999999999999999999999999999999999 5799999999999999999999999999
Q ss_pred CceEeecceeeeeccCCcccCCCCCCCCCCCCCccCCCccCCCCCCCCChHHHH-HHHH
Q 035822 388 SREYVQPQWVYDCVNTRIILPTDAYMVGRVPPPHLSPFVDNEEEGYVPDYAETI-KRLK 445 (471)
Q Consensus 388 ~r~YVQPQWVfDcvN~~~lLp~~~Y~pG~~LPPHLSPFv~~~~~~YvP~~~~~l-~~l~ 445 (471)
||.||||||||||||+|.|||++.|+||+.|||||||||+.++|+|+|++..++ +..+
T Consensus 389 gR~YvQPQWvfDsvNar~llpt~~Y~~G~~LPpHlSPFv~~~~~~yiP~e~l~~~~~~~ 447 (570)
T KOG2481|consen 389 GRTYVQPQWVFDSVNARLLLPTEKYFPGKALPPHLSPFVDEKEGDYIPREELELLEKTQ 447 (570)
T ss_pred eeeeecchhhhhhccchhhccHhhhCCCccCCcccCccccccccCcCChHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999887664 4444
No 2
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-144 Score=1096.72 Aligned_cols=430 Identities=37% Similarity=0.643 Sum_probs=369.9
Q ss_pred CCCCCCCccCcccccccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCC-----CceeEecchhhhhhhchHHHHH
Q 035822 5 YRPAGKKKEGNAAKYITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGN-----HQTYYHLKDVSFIRHDPILEDL 79 (471)
Q Consensus 5 ~~~~kK~~~G~a~~yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~-----~ktyY~~KDI~~L~HePil~kf 79 (471)
||+|+|++.|+|++||||+||+|||||+|+|||||||||||||||||+|+|+| +.||||+||||||+|||+++||
T Consensus 1 ~rik~kn~~g~ar~yItr~qa~kkLql~ladFrrlcilkGvYPrePknkkKankGstap~tfYy~kDiqyL~Hepv~~kf 80 (591)
T COG5163 1 MRIKGKNYIGPARKYITRGQAMKKLQLRLADFRRLCILKGVYPREPKNKKKANKGSTAPGTFYYIKDIQYLAHEPVYRKF 80 (591)
T ss_pred CcccccCcccchhhheeHHHHHHHhcccHHHHhhHhhhcccccCCCccchhcccCCCCceeEEEehhhHHHhccHHHHHH
Confidence 57899999999999999999999999999999999999999999999999997 4899999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhccHHHHHHhhhcCCCCCccchhhccCCChHHHHhCCCchhHHHHHHhhCCCCCCcccchhhhhh
Q 035822 80 RAKSAYRKKIIKAKAKRNKELADILKNRQPEIKLDRLVQERYPHFIDALRDLDDPLTLVHLFAALPASDRLKIEVKRVHN 159 (471)
Q Consensus 80 Re~K~~~kKl~ka~~r~~~~~ak~l~~~~P~y~LdhiIKERYPtF~dALrDLDDaLs~l~LFa~lp~~~~~~i~~~~i~~ 159 (471)
|++|+|++|++||+|+|++..|+||+.++|.|+||||||||||+|.||++||||||||+|||++||.++ +|+++++++
T Consensus 81 re~K~farKl~ralG~Ge~e~akRle~~~~~Y~ldhiIKeRyp~f~dAv~diddaLsmLfLfs~lp~td--~i~s~~~~~ 158 (591)
T COG5163 81 RENKRFARKLKRALGTGEFEYAKRLEICDEEYGLDHIIKERYPGFGDAVDDIDDALSMLFLFSMLPLTD--RISSKIAND 158 (591)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHhhhccccccHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCccc--hhhHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred hhHHHHHHHHHHHHhcccceeEEEeeeeEEEEEEcCeeEEEEcccCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 035822 160 CRKLSHEWQAYISRTHKLRKVFISVKGVYYQAEVEGQKITWLTPHGMQQVLPDDDVVYDVLLSFLEFYETLLAFVNFKLY 239 (471)
Q Consensus 160 c~rL~~Ef~~yv~~t~~LrKvFiSIKGiYyQAeI~Gq~ItWlvP~~f~~~~p~~dVDfrVm~tFlEFY~tLl~FVnfkLY 239 (471)
|+++|++|++||++.++|||+|+||||+||||+|.|+.|+|+|||+|++++|. |||||||+||||||+||||||+||||
T Consensus 159 ~q~vc~~f~~yV~r~~llrk~f~SikGvYyQa~i~ge~v~W~VPykf~e~iP~-dvdfrim~tflefy~~ll~fV~~Kly 237 (591)
T COG5163 159 AQEVCEMFEDYVRRRSLLRKSFMSIKGVYYQATIGGEKVVWFVPYKFPENIPG-DVDFRIMLTFLEFYSTLLHFVSLKLY 237 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeecceEEEEEeeccccccCCC-chhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhcCccCCCCCChhHHHhHHHHHHHHhhhccCCCCcc-----hhh--hhhh-------H--HHHHHHHHhhccCCCCCCc
Q 035822 240 HSINVKYPPILDPQLEASAAELYALARYFDANSRPSE-----KVE--ATQE-------E--ESELRLAQLQHQLPSNEPG 303 (471)
Q Consensus 240 ~~~nl~YPPk~d~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~--~~~~-------e--~~e~~i~~~~~~~~~~~~~ 303 (471)
+..||.|||++|-......++|++.-+.-+ +..+.+ +.+ +..+ + +.+....++++.+++.+..
T Consensus 238 ~~~gl~yPpK~d~~k~~~~~glssyelEes-Sslp~~i~~~~k~~~~~~stlksav~~D~~n~D~s~~e~sek~~e~~~e 316 (591)
T COG5163 238 VEEGLDYPPKFDWSKPNFLDGLSSYELEES-SSLPTEIEEDVKVESLDSSTLKSAVCNDPGNIDVSKEELSEKIPELMVE 316 (591)
T ss_pred HhhcccCCcccccCcchhhhhhhhhhhhcc-cccchhhcccccccccchHHHHHHHhcCcccccccHHHHhccchHHHhh
Confidence 999999999999988887777765422100 111100 000 0000 0 0000011111111110000
Q ss_pred ---------hhhhhhcccccccccchhhhhhcCCCCCceEEEecCCchhhHHHHhHhcCceeecCCC---CCCCCCCCCC
Q 035822 304 ---------ALMQLVKDAADENEEDEDTKECKNLFKNMRFFLSREVPRESMLFVIPAFGGTVSWEGE---GAPFSETDQS 371 (471)
Q Consensus 304 ---------~~~~~~~~~~~~~~~~~~~~~~~~LF~g~~FfI~REvPre~LefiIrs~GG~V~wd~~---~~~~~e~d~~ 371 (471)
.+.+.....+.+...+.-.++.+.||+|++|||+||||+.+|+|||+||||.|+|++. ++++...|+.
T Consensus 317 ~~~~ee~ld~f~d~~~n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~ 396 (591)
T COG5163 317 CRLVEEKLDTFEDNNKNKDIMEMVSKPCSSLKSLFSGFKFYISREVPGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEK 396 (591)
T ss_pred hHHHHhhhhhhhccccchhhhhhccCcCcchhhhhhceEEEEeccccchHHHHHHHHcCCcccCchhhccCCchhhccch
Confidence 0000000112334445566778899999999999999999999999999999999974 7778889999
Q ss_pred ceEEEecCCCCCCccCCceEeecceeeeeccCCcccCCCCCCCCCCCCCccCCCccCCCCCCCCChHHH
Q 035822 372 ITHQIVDRPTQGHVYLSREYVQPQWVYDCVNTRIILPTDAYMVGRVPPPHLSPFVDNEEEGYVPDYAET 440 (471)
Q Consensus 372 ITH~IvDRP~~~~~~~~r~YVQPQWVfDcvN~~~lLp~~~Y~pG~~LPPHLSPFv~~~~~~YvP~~~~~ 440 (471)
|||||||||...+++.||.||||||||||||+|.|.+++.|.+|+.||||||||++ .|+|+|.+..+
T Consensus 397 vth~i~drp~~~~kvegrtYiQPQw~fDsiNkG~l~~~~~Y~~G~~LPpHlSPf~~--v~~ydP~a~l~ 463 (591)
T COG5163 397 VTHQIVDRPVMKNKVEGRTYIQPQWLFDSINKGKLACVENYCVGKRLPPHLSPFAS--VDSYDPRASLM 463 (591)
T ss_pred hhhhhccchhhhhhhcceeeechHHHHhhhccccchhhhhccccccCCCCcCcccc--ccccCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999998 67799997643
No 3
>PF06732 Pescadillo_N: Pescadillo N-terminus; InterPro: IPR010613 Pescadillo protein localises to distinct substructures of the interphase nucleus including nucleoli, the site of ribosome biogenesis. During mitosis pescadillo closely associates with the periphery of metaphase chromosomes and by late anaphase is associated with nucleolus-derived foci and prenucleolar bodies. Blastomeres in mouse embryos lacking pescadillo arrest at morula stages of development, the nucleoli fail to differentiate and accumulation of ribosomes is inhibited. It has been proposed that in mammalian cells pescadillo is essential for ribosome biogenesis and nucleologenesis and that disruption to its function results in cell cycle arrest []. ; GO: 0042254 ribosome biogenesis, 0005730 nucleolus
Probab=100.00 E-value=4.2e-115 Score=858.49 Aligned_cols=253 Identities=57% Similarity=0.978 Sum_probs=246.8
Q ss_pred CCCCccCcccccccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCCC-----ceeEecchhhhhhhchHHHHHHHH
Q 035822 8 AGKKKEGNAAKYITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGNH-----QTYYHLKDVSFIRHDPILEDLRAK 82 (471)
Q Consensus 8 ~kK~~~G~a~~yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~~-----ktyY~~KDI~~L~HePil~kfRe~ 82 (471)
||||++|+|+|||||+||+|||||||+|||||||||||||||||+|+++|+ +||||+|||+||+||||++|||++
T Consensus 1 kkK~~~g~a~~yiTR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~kg~~~~ktyY~~KDI~~L~hepil~kfRe~ 80 (281)
T PF06732_consen 1 KKKGEKGEAKNYITRNQALKKLQLSLKDFRRLCILKGIYPREPKKKKKVNKGSTAPKTYYHIKDIKFLAHEPILQKFREI 80 (281)
T ss_pred CCCcccccccccccHHHHHHHhcCCHHHHhhHHhhcCccCCCCCcccccccCCCCCceEEEHHHHHHHhccHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998874 999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccHHHHHHhhhcCCCCCccchhhccCCChHHHHhCCCchhHHHHHHhhCCCCCCcccchhhhhhhhH
Q 035822 83 SAYRKKIIKAKAKRNKELADILKNRQPEIKLDRLVQERYPHFIDALRDLDDPLTLVHLFAALPASDRLKIEVKRVHNCRK 162 (471)
Q Consensus 83 K~~~kKl~ka~~r~~~~~ak~l~~~~P~y~LdhiIKERYPtF~dALrDLDDaLs~l~LFa~lp~~~~~~i~~~~i~~c~r 162 (471)
|+|+||++||.|||++++|++|.+|+|+|+||||||||||||+|||||||||||||||||+||+++ .|++++|++|+|
T Consensus 81 k~~~kK~~ka~~r~~~~~~~~l~~~kP~y~LdhiIKERYPtF~dALrDLDDaLs~i~Lfa~lp~~~--~i~~~~i~~c~r 158 (281)
T PF06732_consen 81 KAFLKKLRKAKARGEKDKAKRLRENKPRYKLDHIIKERYPTFIDALRDLDDALSMIFLFATLPADK--KIPSELIAKCRR 158 (281)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCCCCCchhhhhccCCCcHHHHHHHHHHHHHHHHHHHhCCCcC--CCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHhcccceeEEEeeeeEEEEEEcCeeEEEEcccCCCCCCCCCccchhhhhHHHHHHHHHHHHHHHhhhhhc
Q 035822 163 LSHEWQAYISRTHKLRKVFISVKGVYYQAEVEGQKITWLTPHGMQQVLPDDDVVYDVLLSFLEFYETLLAFVNFKLYHSI 242 (471)
Q Consensus 163 L~~Ef~~yv~~t~~LrKvFiSIKGiYyQAeI~Gq~ItWlvP~~f~~~~p~~dVDfrVm~tFlEFY~tLl~FVnfkLY~~~ 242 (471)
||+||++||+++++|||||||||||||||||+||+|||++||+|+|.+|. ||||+||+||+|||+|||||||||||+++
T Consensus 159 L~~ef~~yv~~~~~LrKvFiSiKGiYyQAeI~G~~ItWl~Ph~f~~~~p~-dVD~~vm~tFlEFY~tLl~FVnfkLy~~~ 237 (281)
T PF06732_consen 159 LCNEFQHYVIRTRSLRKVFISIKGIYYQAEILGQKITWLVPHQFSQDIPT-DVDFRVMLTFLEFYTTLLGFVNFKLYHSL 237 (281)
T ss_pred HHHHHHHHHHHhhhhhhheeeeeeEEEEEEECCceEEEEeccccCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CccCCCCCChhHHHhHHHHHH
Q 035822 243 NVKYPPILDPQLEASAAELYA 263 (471)
Q Consensus 243 nl~YPPk~d~~~~~~~~~l~~ 263 (471)
||.|||+++...+..+.++.+
T Consensus 238 ~l~YPP~~~~~~~~~~~~~~~ 258 (281)
T PF06732_consen 238 NLVYPPKLDSSLDKEAAGLSA 258 (281)
T ss_pred CCCCCCcccccccchhcchhh
Confidence 999999999998877665544
No 4
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.99 E-value=3.3e-10 Score=89.62 Aligned_cols=69 Identities=30% Similarity=0.513 Sum_probs=56.3
Q ss_pred hcCCCCCceEEEe--cCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCC-CCC-----CccCCceEeecce
Q 035822 325 CKNLFKNMRFFLS--REVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRP-TQG-----HVYLSREYVQPQW 396 (471)
Q Consensus 325 ~~~LF~g~~FfI~--REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP-~~~-----~~~~~r~YVQPQW 396 (471)
..++|+|++|+|+ .+..++.|+.+|+++||.|..+ .++..||.|++.+ ... ....+..+|.|||
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~--------~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~W 73 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNS--------FSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDW 73 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESS--------SSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEee--------cccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHH
Confidence 3579999999993 3467999999999999999764 3578999999988 222 2336899999999
Q ss_pred eeeec
Q 035822 397 VYDCV 401 (471)
Q Consensus 397 VfDcv 401 (471)
|.|||
T Consensus 74 i~~ci 78 (78)
T PF00533_consen 74 IEDCI 78 (78)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99996
No 5
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.70 E-value=1.4e-08 Score=78.63 Aligned_cols=70 Identities=30% Similarity=0.543 Sum_probs=57.1
Q ss_pred CCCCCceEEEecC---CchhhHHHHhHhcCceeecCCCCCCCCCCCC-CceEEEecCCCCCCc------cCCceEeecce
Q 035822 327 NLFKNMRFFLSRE---VPRESMLFVIPAFGGTVSWEGEGAPFSETDQ-SITHQIVDRPTQGHV------YLSREYVQPQW 396 (471)
Q Consensus 327 ~LF~g~~FfI~RE---vPre~LefiIrs~GG~V~wd~~~~~~~e~d~-~ITH~IvDRP~~~~~------~~~r~YVQPQW 396 (471)
++|+|++||++.. ..++.|...|+++||.+.-.. ++ +.||.|++.+..... ..+..+|.|+|
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~--------~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~W 72 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSL--------SSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDW 72 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEeccc--------CccceeEEEEcCCCCccHHHHHHHHcCCCCccHHH
Confidence 4899999999973 468999999999999998542 22 689999998865432 26789999999
Q ss_pred eeeeccCC
Q 035822 397 VYDCVNTR 404 (471)
Q Consensus 397 VfDcvN~~ 404 (471)
|.||+..+
T Consensus 73 i~~~~~~~ 80 (80)
T smart00292 73 LLDCLKAG 80 (80)
T ss_pred HHHHHHCc
Confidence 99999864
No 6
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.44 E-value=2e-07 Score=70.38 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=52.4
Q ss_pred CceEEEecCC---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC-----ccCCceEeecceeeeec
Q 035822 331 NMRFFLSREV---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH-----VYLSREYVQPQWVYDCV 401 (471)
Q Consensus 331 g~~FfI~REv---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~-----~~~~r~YVQPQWVfDcv 401 (471)
|++||++... .++.|+-+|+++||.|..+. ++..||.|++.+.... ...+...|.||||.||+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~--------~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSV--------SKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccc--------cCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 6889999974 68999999999999999863 2578999999886532 22678999999999997
No 7
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.61 E-value=3e-05 Score=86.77 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=70.7
Q ss_pred hhhhhcCCCCCceEEEecCCc----hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEe--cCCCCCCcc----CCce
Q 035822 321 DTKECKNLFKNMRFFLSREVP----RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIV--DRPTQGHVY----LSRE 390 (471)
Q Consensus 321 ~~~~~~~LF~g~~FfI~REvP----re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~Iv--DRP~~~~~~----~~r~ 390 (471)
...+.+++|.|+-|++...++ ++.|+-+|..+||.|+..... +-||+|. ++-+...+. .+++
T Consensus 626 ~~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p--------~~~~ci~~a~~et~~vk~~~~~~~cd 697 (881)
T KOG0966|consen 626 KVAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGP--------SDTLCIATAGKETTRVKAQAIKRSCD 697 (881)
T ss_pred cccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCC--------CCcceEEeccccchHHHHHHHhccCc
Confidence 345789999999999999875 577999999999999986432 2467774 555432111 3899
Q ss_pred EeecceeeeeccCCcccCCCCCCCCCCCC
Q 035822 391 YVQPQWVYDCVNTRIILPTDAYMVGRVPP 419 (471)
Q Consensus 391 YVQPQWVfDcvN~~~lLp~~~Y~pG~~LP 419 (471)
.|+|+||.||++...++|..++.....-+
T Consensus 698 Vl~p~Wlldcc~~~~l~p~~P~~~fh~~e 726 (881)
T KOG0966|consen 698 VLKPAWLLDCCKKQRLLPWLPRDLFHATE 726 (881)
T ss_pred eeeHHHHHHHHhhhhccccccHHHHhhCc
Confidence 99999999999999999999988764433
No 8
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=90.17 E-value=0.32 Score=56.20 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=67.7
Q ss_pred hhcCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecC-----CCCC----CccCCceEe
Q 035822 324 ECKNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDR-----PTQG----HVYLSREYV 392 (471)
Q Consensus 324 ~~~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDR-----P~~~----~~~~~r~YV 392 (471)
...+.|.|++|.|+--. +|..+.-+|.++||.|+... ...||.|+-- +... .+-.|.-.|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV---------s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIV 255 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV---------EGVTCLVVSPAERERGGSSKIAEAMERGIPVV 255 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc---------ccceEEEEcCccccccCccHHHHHHHcCCcCc
Confidence 35556999999998864 69999999999999998863 3457888643 3211 122578899
Q ss_pred ecceeeeeccCCcccCCCCCCCCCCCC
Q 035822 393 QPQWVYDCVNTRIILPTDAYMVGRVPP 419 (471)
Q Consensus 393 QPQWVfDcvN~~~lLp~~~Y~pG~~LP 419 (471)
..+|+.||++.+..+|...|......+
T Consensus 256 sEd~L~d~i~~~k~~~~~~y~l~~~~~ 282 (815)
T PLN03122 256 REAWLIDSIEKQEAQPLEAYDVVSDLS 282 (815)
T ss_pred cHHHHHHHHhcCCcccchhhhhccccc
Confidence 999999999999999999999864443
No 9
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=87.16 E-value=0.25 Score=56.49 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=53.9
Q ss_pred CCCCceEEEecCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC-----------CccCCceEeecce
Q 035822 328 LFKNMRFFLSREVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG-----------HVYLSREYVQPQW 396 (471)
Q Consensus 328 LF~g~~FfI~REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~-----------~~~~~r~YVQPQW 396 (471)
+|-.++=++++| ...++.-++-|||+|.-.+... .-.-...||.|+- ++-. ..-..|..++|.|
T Consensus 790 ~f~~~~~~~~se--~~~~~l~~k~~g~~i~~~~~~~--~~~~~~~t~~v~~-~i~~~h~~~~~~~~~~lt~~rkv~~~~w 864 (881)
T KOG0966|consen 790 MFYVLRRKLSSE--EVIIELKLKNFGGRITDAQSEC--NNIGAKYTHCVLR-CIDEDHEKIKEQKKASLTIKRKVVAPSW 864 (881)
T ss_pred eeecccccccHH--HHHHHHHHHHhcceeeeccchh--hhcccceeeeeee-ecchHHHHHHHHHHHHhcccccccCHHH
Confidence 455555555553 3677888999999987654211 0111234888876 4321 1114679999999
Q ss_pred eeeeccCCcccCCCCC
Q 035822 397 VYDCVNTRIILPTDAY 412 (471)
Q Consensus 397 VfDcvN~~~lLp~~~Y 412 (471)
|=+|+|.+.++|.+.|
T Consensus 865 v~~s~~~~~~~~e~~~ 880 (881)
T KOG0966|consen 865 VDHSINENCLLPEEDF 880 (881)
T ss_pred HHHhhcccccCccccC
Confidence 9999999999999988
No 10
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=80.02 E-value=1.1 Score=34.64 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=32.9
Q ss_pred hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecce
Q 035822 342 RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQW 396 (471)
Q Consensus 342 re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQW 396 (471)
+..|.-+|...||.+.-+- ....||.|+..+...+ +-.+...|.|+|
T Consensus 13 ~~~l~~~i~~~Gg~~~~~l--------t~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 13 RSQLRKLIEALGGKYSKDL--------TKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp CCHHHHHHHCTT-EEESSS--------STT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred HHHHHHHHHHCCCEEeccc--------cCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 7889999999999998752 3478999998775321 114688899988
No 11
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=76.84 E-value=0.75 Score=53.54 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=57.2
Q ss_pred hhcCCCCCceEEEecCC-chhhHHHHhHhcCceeecCCCCCCCC-----------------CC-CCCceEEEecCCCCCC
Q 035822 324 ECKNLFKNMRFFLSREV-PRESMLFVIPAFGGTVSWEGEGAPFS-----------------ET-DQSITHQIVDRPTQGH 384 (471)
Q Consensus 324 ~~~~LF~g~~FfI~REv-Pre~LefiIrs~GG~V~wd~~~~~~~-----------------e~-d~~ITH~IvDRP~~~~ 384 (471)
..++||.||+|.+..=+ .++.+.--+.+.||.|.-.+--.+|. .. +-.=--.|.|+=--..
T Consensus 921 ~gkniFd~cvF~lTsa~~sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~ 1000 (1176)
T KOG3548|consen 921 IGKNIFDGCVFMLTSANRSDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTH 1000 (1176)
T ss_pred hCcchhcceeEEEeccccchhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHH
Confidence 34799999999998764 45555666667899886543111121 00 0000112333321112
Q ss_pred cc-----CCceEeecceeeeeccCCcccCCCCCCC
Q 035822 385 VY-----LSREYVQPQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 385 ~~-----~~r~YVQPQWVfDcvN~~~lLp~~~Y~p 414 (471)
+| .|.--|.||||=+|+-++.++|..+|+.
T Consensus 1001 KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLL 1035 (1176)
T KOG3548|consen 1001 KYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLL 1035 (1176)
T ss_pred HHHHHHHcCCCcccHHHHHHHHhccccccchhhcc
Confidence 33 4667799999999999999999999973
No 12
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.31 E-value=1.6 Score=51.17 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=54.8
Q ss_pred EEEecCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCC-----CCCCccCCceEeecceeeeeccCCcccC
Q 035822 334 FFLSREVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRP-----TQGHVYLSREYVQPQWVYDCVNTRIILP 408 (471)
Q Consensus 334 FfI~REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP-----~~~~~~~~r~YVQPQWVfDcvN~~~lLp 408 (471)
--++.+.-...+...++..||.+.-+ +...||.|+||= .++..-.|.-.|-|||+-+|+-.|.+++
T Consensus 662 ~lfs~~~~~~~~k~~~k~lg~s~~ss---------~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~d 732 (896)
T KOG2043|consen 662 VLFSDKNDGKNYKLAKKFLGGSVASS---------DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLD 732 (896)
T ss_pred eeeeeccCchhhhhHHhhccceeecc---------cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhcccccc
Confidence 44455566677888888888766543 345799999964 2234446889999999999999999999
Q ss_pred CCCCCC
Q 035822 409 TDAYMV 414 (471)
Q Consensus 409 ~~~Y~p 414 (471)
..+|..
T Consensus 733 ek~yil 738 (896)
T KOG2043|consen 733 EKPYIL 738 (896)
T ss_pred Cccccc
Confidence 999975
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=69.91 E-value=2.8 Score=44.74 Aligned_cols=88 Identities=23% Similarity=0.419 Sum_probs=64.7
Q ss_pred hhhhhhcCCCCCceEEEecCCc--hhhHHHHhHhcCceee--cCCCCCCCCCCCCCceEEEecCCCCC--Ccc--CCceE
Q 035822 320 EDTKECKNLFKNMRFFLSREVP--RESMLFVIPAFGGTVS--WEGEGAPFSETDQSITHQIVDRPTQG--HVY--LSREY 391 (471)
Q Consensus 320 ~~~~~~~~LF~g~~FfI~REvP--re~LefiIrs~GG~V~--wd~~~~~~~e~d~~ITH~IvDRP~~~--~~~--~~r~Y 391 (471)
......++|.+|.+|.||.=.. |..|.---...|.+-- |. .| -||-|+-=|... .++ .|-.+
T Consensus 309 s~t~el~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~-~g---------sThLICAF~NTPKy~QV~g~Gg~I 378 (508)
T KOG3226|consen 309 SNTTELSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWN-AG---------STHLICAFPNTPKYRQVEGNGGTI 378 (508)
T ss_pred CCchhHHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcC-CC---------ceeEEEecCCCcchhhcccCCceE
Confidence 3455788899999999998642 4555555556676644 53 23 499999877543 233 35579
Q ss_pred eecceeeeeccCCcccCCCCCCCCCC
Q 035822 392 VQPQWVYDCVNTRIILPTDAYMVGRV 417 (471)
Q Consensus 392 VQPQWVfDcvN~~~lLp~~~Y~pG~~ 417 (471)
|.-.||-||-..+.+||...|+.-..
T Consensus 379 V~keWI~~Cy~~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 379 VSKEWITECYAQKKLLPIRRYLMHAG 404 (508)
T ss_pred eeHHHHHHHHHHHhhccHHHHHhcCC
Confidence 99999999999999999999987554
No 14
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=69.11 E-value=3.9 Score=48.52 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=64.5
Q ss_pred hhcCCCCCceEEEecCCch--hhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC--------ccCCceEee
Q 035822 324 ECKNLFKNMRFFLSREVPR--ESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH--------VYLSREYVQ 393 (471)
Q Consensus 324 ~~~~LF~g~~FfI~REvPr--e~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~--------~~~~r~YVQ 393 (471)
...+.|.|++|.++--.+. ..+.-.|.++||.++-.. ...+||.|+.. ...+ +-.+.-.|.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v--------~~~~t~l~tt~-e~~k~~~kv~qAk~~~ipIVs 459 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATV--------KKDTNCLVVCG-ELDDEDAEMRKARRMKIPIVR 459 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeec--------cCCceEEEccH-HhhhcchHHHHHHhcCCCccc
Confidence 5677899999999987665 677778999999998753 23568988774 3211 114688899
Q ss_pred cceeeeeccCCcccCCCCCCCC
Q 035822 394 PQWVYDCVNTRIILPTDAYMVG 415 (471)
Q Consensus 394 PQWVfDcvN~~~lLp~~~Y~pG 415 (471)
-.|+-||+..+..+|...|...
T Consensus 460 edwL~ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 460 EDYLVDCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHHHHHHhccccCcchhhhhc
Confidence 9999999999999999999654
No 15
>PF12728 HTH_17: Helix-turn-helix domain
Probab=62.84 E-value=7.6 Score=28.76 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=35.6
Q ss_pred cccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCCCceeEecchhhhh
Q 035822 19 YITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGNHQTYYHLKDVSFI 70 (471)
Q Consensus 19 yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~~ktyY~~KDI~~L 70 (471)
|+|..||...|++|..-++++|-=++| |.- + .+.+.+|...||.-.
T Consensus 1 ~lt~~e~a~~l~is~~tv~~~~~~g~i-~~~---~--~g~~~~~~~~~l~~~ 46 (51)
T PF12728_consen 1 YLTVKEAAELLGISRSTVYRWIRQGKI-PPF---K--IGRKWRIPKSDLDRW 46 (51)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCC-CeE---E--eCCEEEEeHHHHHHH
Confidence 789999999999999999999964444 332 2 235799999998543
No 16
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=53.97 E-value=5.7 Score=33.62 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.3
Q ss_pred cccccccHHHHHHHhcCChhhhhhheeccc
Q 035822 15 NAAKYITRSQALKQLQVNTKLFRKLCIYKG 44 (471)
Q Consensus 15 ~a~~yITR~qAlkkLQlsl~dFRRLCILKG 44 (471)
.....++....++.|++|...|.-+|||-|
T Consensus 63 ~~~~~~~~~~i~~~l~l~~~~fi~~~iL~G 92 (94)
T PF00867_consen 63 KEVEVIDLDDILKELGLTREQFIDLCILCG 92 (94)
T ss_dssp SEEEEEEHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred cceEEEEHHHHHHHcCCCHHHHHHHheecC
Confidence 345789999999999999999999999987
No 17
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=49.49 E-value=21 Score=25.04 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=35.0
Q ss_pred ccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCCCceeEecchhhhhh
Q 035822 20 ITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGNHQTYYHLKDVSFIR 71 (471)
Q Consensus 20 ITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~~ktyY~~KDI~~L~ 71 (471)
+|..+|.+.|++|..-++++|= .|..|. . + ..++...|...||.-++
T Consensus 1 ~s~~e~a~~lgvs~~tl~~~~~-~g~~~~--~-~-~~~~~~~~~~~ei~~~~ 47 (49)
T cd04762 1 LTTKEAAELLGVSPSTLRRWVK-EGKLKA--I-R-TPGGHRRFPEEDLERLL 47 (49)
T ss_pred CCHHHHHHHHCcCHHHHHHHHH-cCCCCc--e-e-CCCCceecCHHHHHHHH
Confidence 4789999999999999999964 576663 1 2 23357789999986543
No 18
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=46.97 E-value=14 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=35.0
Q ss_pred cccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCCCceeEecchhhh
Q 035822 19 YITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGNHQTYYHLKDVSF 69 (471)
Q Consensus 19 yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~~ktyY~~KDI~~ 69 (471)
|+|..+|.+.|++|..-++++|= .|..|.. +. + ....|...||.-
T Consensus 1 ~lt~~e~a~~lgis~~ti~~~~~-~g~i~~~---~~-g-~~~~~~~~~l~~ 45 (49)
T TIGR01764 1 YLTVEEAAEYLGVSKDTVYRLIH-EGELPAY---RV-G-RHYRIPREDVDE 45 (49)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH-cCCCCeE---Ee-C-CeEEEeHHHHHH
Confidence 78999999999999999999974 5655542 22 3 477888888854
No 19
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=46.42 E-value=10 Score=37.46 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=55.0
Q ss_pred CCCceEEEecCCchhhHHHHhHhcCceee-cCCCCCCCCCCCCCceEEEecCCCCCC--ccCCceEeecceeeeeccCCc
Q 035822 329 FKNMRFFLSREVPRESMLFVIPAFGGTVS-WEGEGAPFSETDQSITHQIVDRPTQGH--VYLSREYVQPQWVYDCVNTRI 405 (471)
Q Consensus 329 F~g~~FfI~REvPre~LefiIrs~GG~V~-wd~~~~~~~e~d~~ITH~IvDRP~~~~--~~~~r~YVQPQWVfDcvN~~~ 405 (471)
|+|.+=|.++.|+.+.-.|-+ +.||.|+ |+.++=-|+ +| -+|.=.-|--... +-.+-..-+|-||-=|.|+..
T Consensus 1 F~~q~aWFs~SVs~~~~~~Wv-~~GG~isd~~~AdFLFS-~D--AshpDT~~iy~S~dY~~d~aTVFha~yl~a~~na~s 76 (212)
T PF15101_consen 1 FQGQRAWFSGSVSQDLRQFWV-KEGGTISDWDAADFLFS-CD--ASHPDTARIYQSLDYIEDRATVFHASYLSAVANAES 76 (212)
T ss_pred CCCceeeeecCcchHHHHHHH-hcCCccCChhhcceeee-cC--CCCcchHhhhhhhhhhhcCeeeeeHHHHHHHhhhhh
Confidence 889999999999999999988 5888876 876543333 22 1221111100000 112335568999999999988
Q ss_pred ccCCCCCCCCC-CC--CCc
Q 035822 406 ILPTDAYMVGR-VP--PPH 421 (471)
Q Consensus 406 lLp~~~Y~pG~-~L--PPH 421 (471)
.-++. .|. +| ||-
T Consensus 77 ~~sV~---LGhyVL~~PP~ 92 (212)
T PF15101_consen 77 KNSVA---LGHYVLNTPPE 92 (212)
T ss_pred cCCcc---ccceEecCCHH
Confidence 76665 454 55 776
No 20
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=41.46 E-value=37 Score=39.02 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=32.0
Q ss_pred hhhcCCCCCceEEEecC---CchhhHHHHhHhcCceeecC
Q 035822 323 KECKNLFKNMRFFLSRE---VPRESMLFVIPAFGGTVSWE 359 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~RE---vPre~LefiIrs~GG~V~wd 359 (471)
...-+||+|+.||+..+ -|.+.|.-+|.++||.|.--
T Consensus 582 s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~ 621 (684)
T KOG4362|consen 582 SYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQV 621 (684)
T ss_pred ccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeec
Confidence 34567999999999998 58999999999999998754
No 21
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=39.48 E-value=16 Score=42.73 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=55.9
Q ss_pred hcCCCCCceEEEec-CC-chhhHHHHhHhcCceee-cCCCCCCCCCCCCCceEEEecCCCCC-Ccc-----CCceEeecc
Q 035822 325 CKNLFKNMRFFLSR-EV-PRESMLFVIPAFGGTVS-WEGEGAPFSETDQSITHQIVDRPTQG-HVY-----LSREYVQPQ 395 (471)
Q Consensus 325 ~~~LF~g~~FfI~R-Ev-Pre~LefiIrs~GG~V~-wd~~~~~~~e~d~~ITH~IvDRP~~~-~~~-----~~r~YVQPQ 395 (471)
..-.|.|++..+.+ +. =+..+.++|.++||... |= +.+.+|+++- |.+. .+| -+-..+-++
T Consensus 100 ~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L---------~s~v~~~~~~-~~~~~~kYe~al~wn~~v~~~~ 169 (811)
T KOG1929|consen 100 KCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSL---------SSDVNSLKIL-PEVKTEKYEQALKWNIPVVSDD 169 (811)
T ss_pred cCCcccceEEEecccchHHHHHHHHHhhhcccEEehhh---------hhhhheeeec-cccchHHHHHHHhhCCccccHH
Confidence 34467777776665 33 47899999999999865 42 1234444432 1111 233 356778899
Q ss_pred eeeeeccCCcccCCCCCCCCC
Q 035822 396 WVYDCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~pG~ 416 (471)
|.|||+|.+.++++.+|-.+.
T Consensus 170 w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 170 WLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred HHhhhhccccccccccccccc
Confidence 999999999999999997654
No 22
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.07 E-value=58 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.3
Q ss_pred ccHHHHHHHhcCChhhhhhheeccccccCCCCCccCCCCceeEecchhhhh
Q 035822 20 ITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKGNHQTYYHLKDVSFI 70 (471)
Q Consensus 20 ITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~~~ktyY~~KDI~~L 70 (471)
+|-.++.+.|++|..-.|++ +=+|.-| |.+ ..++.-+|...||.-|
T Consensus 1 ~~~~e~a~~~gv~~~tlr~~-~~~g~l~--~~~--~~~~~~~y~~~~v~~l 46 (49)
T cd04761 1 YTIGELAKLTGVSPSTLRYY-ERIGLLS--PAR--TEGGYRLYSDADLERL 46 (49)
T ss_pred CcHHHHHHHHCcCHHHHHHH-HHCCCCC--CCc--CCCCCEEeCHHHHHHh
Confidence 46789999999999999987 6788877 432 2235677888888654
No 23
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=32.14 E-value=37 Score=26.61 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=29.6
Q ss_pred ccHHHHHHHhcCChhhhhhheeccccccCCCCCcc
Q 035822 20 ITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKF 54 (471)
Q Consensus 20 ITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~ 54 (471)
++-.+|.+.|++|.-.+.|.|=--|| ||=|-.|.
T Consensus 16 lp~~eAA~~Lgv~~T~LKr~CR~~GI-~RWP~Rkl 49 (52)
T PF02042_consen 16 LPIKEAAKELGVSVTTLKRRCRRLGI-PRWPYRKL 49 (52)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHcCC-CCCCchhh
Confidence 67789999999999999999999998 77776554
No 24
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=30.59 E-value=29 Score=28.78 Aligned_cols=38 Identities=29% Similarity=0.593 Sum_probs=28.8
Q ss_pred hccCCChHHHH------------hCCCchhHHHHHHhhCCCCCCcccchhhhhhhhHHHHHHHH
Q 035822 118 QERYPHFIDAL------------RDLDDPLTLVHLFAALPASDRLKIEVKRVHNCRKLSHEWQA 169 (471)
Q Consensus 118 KERYPtF~dAL------------rDLDDaLs~l~LFa~lp~~~~~~i~~~~i~~c~rL~~Ef~~ 169 (471)
+|+|-+|.+++ |+.|..|--|.. ...+.|||+.++|+.
T Consensus 17 ~E~Y~~f~~~~~~k~~~~~qYdYr~~~GeLFscV~--------------~tLeEcRr~rd~WL~ 66 (69)
T PF12989_consen 17 EEKYEKFQLGIGRKGVTKYQYDYRHTDGELFSCVA--------------PTLEECRRLRDEWLS 66 (69)
T ss_pred ceeeeeeeeccccccceEEEEeeecCCccchhhhh--------------ccHHHHHHHHHHHHh
Confidence 58888888877 788887654432 347899999999975
No 25
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=29.68 E-value=1.6e+02 Score=28.74 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=66.1
Q ss_pred hhchHHHHHHHHhHHHHHHHHHHhhccHHHHHHhhh--------------cCCCCCccchhhccC-CChHHHHhCCCchh
Q 035822 71 RHDPILEDLRAKSAYRKKIIKAKAKRNKELADILKN--------------RQPEIKLDRLVQERY-PHFIDALRDLDDPL 135 (471)
Q Consensus 71 ~HePil~kfRe~K~~~kKl~ka~~r~~~~~ak~l~~--------------~~P~y~LdhiIKERY-PtF~dALrDLDDaL 135 (471)
.+|-++..-||+-...|+.-.++.|++...|..... ..|.| || -....|+..+=+|+
T Consensus 19 ~RE~iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~--------~y~~~~~~~lQEyvEA~ 90 (204)
T PRK14562 19 AREEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKELLKDHPEL--------YYAGYVGTALQEYVEAL 90 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhccCchh--------hhhhhcchHHHHHHHHH
Confidence 578889999999999999888888887665443311 23433 44 45677999999999
Q ss_pred HHHHHHh--hCCCCCCcccchhh-hhhhhHHHHHHHHHHHHh
Q 035822 136 TLVHLFA--ALPASDRLKIEVKR-VHNCRKLSHEWQAYISRT 174 (471)
Q Consensus 136 s~l~LFa--~lp~~~~~~i~~~~-i~~c~rL~~Ef~~yv~~t 174 (471)
++.+... .||+.+..+|++.- +.----++-|-+.|++.+
T Consensus 91 ~f~~~l~~~~l~s~eel~v~~~dYLlGl~Dl~GEL~R~al~~ 132 (204)
T PRK14562 91 LVYSLLFENKIPSPEELGVPEAAYLLGLADAIGELRRHILEL 132 (204)
T ss_pred HHHHHHcCCCCCCHHHcCCCHHHHHhHHHHHHhHHHHHHHHH
Confidence 9998876 67766544555532 111122777888887766
No 26
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=3e+02 Score=29.61 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=79.9
Q ss_pred hhhhhhchHHHHHHH-HhHHHHHHHHHHhhccHHHHHHhhhcCCCCCccchhhccCCChHHHHhCCCchhHHHHH---Hh
Q 035822 67 VSFIRHDPILEDLRA-KSAYRKKIIKAKAKRNKELADILKNRQPEIKLDRLVQERYPHFIDALRDLDDPLTLVHL---FA 142 (471)
Q Consensus 67 I~~L~HePil~kfRe-~K~~~kKl~ka~~r~~~~~ak~l~~~~P~y~LdhiIKERYPtF~dALrDLDDaLs~l~L---Fa 142 (471)
+--|++.|++++++- ...|++-+=.|..-||...-.+|....-. -|-|..--.-|-.=.+|++| -=
T Consensus 217 fGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~----------~p~L~~~e~~L~qKI~LmaLiEi~F 286 (380)
T KOG2908|consen 217 FGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGK----------QPDLASNEDFLLQKIRLLALIEITF 286 (380)
T ss_pred HHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhcc----------CchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999997 55789999999999999999888762211 56665544444454555554 33
Q ss_pred hCCCCCCcccchhhhhhhhHHH-HHHHHHHHHhcccceeEEEeeeeEEEEEEcCeeEEEEcc
Q 035822 143 ALPASDRLKIEVKRVHNCRKLS-HEWQAYISRTHKLRKVFISVKGVYYQAEVEGQKITWLTP 203 (471)
Q Consensus 143 ~lp~~~~~~i~~~~i~~c~rL~-~Ef~~yv~~t~~LrKvFiSIKGiYyQAeI~Gq~ItWlvP 203 (471)
.-|+..+ .++-+.|+..-+|. .|=.+.|+++=++ .- |||-==|.+ +=..++|+.|
T Consensus 287 ~rpa~~R-~lsf~~Ia~~tkip~~eVE~LVMKAlsl--gL--ikG~Idqv~-~~v~~swvqP 342 (380)
T KOG2908|consen 287 SRPANER-TLSFKEIAEATKIPNKEVELLVMKALSL--GL--IKGSIDQVE-GVVYMSWVQP 342 (380)
T ss_pred cCcchhc-cccHHHHHHHhCCCHHHHHHHHHHHHhc--cc--eeeeecccc-cEEEEecccc
Confidence 5677776 89988888777765 4556667766333 21 445422211 0135899999
No 27
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=23.48 E-value=1.2e+02 Score=31.13 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=35.8
Q ss_pred cCCCCCceEEEecCC---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEec
Q 035822 326 KNLFKNMRFFLSREV---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVD 378 (471)
Q Consensus 326 ~~LF~g~~FfI~REv---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvD 378 (471)
...|.|.+|.+.-.. +|..++-+|..+||.|..+.+ ...|+.|+.
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs--------~~t~~lV~G 265 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVT--------KKTTYLVTN 265 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcc--------cCceEEEEC
Confidence 457999999999874 899999999999999988642 244556665
No 28
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=22.73 E-value=1.1e+02 Score=31.74 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=37.4
Q ss_pred hcCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecC
Q 035822 325 CKNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDR 379 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDR 379 (471)
...||.|.+|.+.-+. +|+.++-.|.+.||.|+.+.+ ...+..|+.-
T Consensus 229 ~~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs--------~~t~~lv~g~ 277 (313)
T PRK06063 229 GRPLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVD--------RDTSLVVCND 277 (313)
T ss_pred CCcccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccc--------cCccEEEECC
Confidence 3568999999999876 899999999999999987642 2445666653
Done!