Query 035822
Match_columns 471
No_of_seqs 128 out of 236
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep8_A Pescadillo homolog 1; A 100.0 3.6E-34 1.2E-38 244.9 6.6 92 322-413 6-100 (100)
2 1z56_C DNA ligase IV; DNA repa 99.8 1.7E-21 5.7E-26 188.8 0.5 110 325-437 2-126 (264)
3 3pc7_A DNA ligase 3; DNA repai 99.8 5.9E-21 2E-25 160.1 2.5 77 323-410 11-88 (88)
4 3pc6_A DNA repair protein XRCC 99.8 6.9E-20 2.4E-24 157.8 4.4 82 325-414 4-94 (104)
5 1wf6_A Similar to S.pombe -RAD 99.7 2.1E-18 7.2E-23 152.7 4.1 87 324-423 36-130 (132)
6 2ebw_A DNA repair protein REV1 99.7 3.2E-18 1.1E-22 142.5 4.0 85 323-414 7-95 (97)
7 4id3_A DNA repair protein REV1 99.6 3.6E-16 1.2E-20 127.9 3.2 85 324-414 3-91 (92)
8 3ii6_X DNA ligase 4; XRCC4, NH 99.5 1E-15 3.5E-20 149.7 3.0 115 323-445 5-130 (263)
9 3u3z_A Microcephalin; DNA repa 99.5 1.3E-14 4.6E-19 136.4 3.5 81 325-416 116-199 (199)
10 2nte_A BARD-1, BRCA1-associate 99.4 3E-13 1E-17 126.7 6.2 86 325-410 101-209 (210)
11 1z56_C DNA ligase IV; DNA repa 99.4 5.8E-14 2E-18 135.8 1.3 83 323-414 155-261 (264)
12 3ii6_X DNA ligase 4; XRCC4, NH 99.2 1.9E-11 6.5E-16 119.5 7.2 83 324-414 160-263 (263)
13 2d8m_A DNA-repair protein XRCC 99.2 1.9E-11 6.3E-16 107.6 6.2 100 320-427 14-119 (129)
14 3l3e_A DNA topoisomerase 2-bin 99.1 6.4E-11 2.2E-15 100.5 4.9 84 323-414 10-102 (107)
15 1t15_A Breast cancer type 1 su 99.0 2E-10 6.7E-15 106.6 4.9 88 325-416 112-212 (214)
16 2cou_A ECT2 protein; BRCT doma 98.9 1.4E-09 4.9E-14 93.2 5.2 90 325-422 9-104 (109)
17 2jw5_A DNA polymerase lambda; 98.9 5.4E-10 1.9E-14 95.9 2.6 82 324-413 7-102 (106)
18 2vxb_A DNA repair protein RHP9 98.7 3.3E-09 1.1E-13 102.6 3.2 88 327-414 1-116 (241)
19 1kzy_C Tumor suppressor P53-bi 98.6 2.4E-08 8.3E-13 97.4 4.3 89 325-415 12-136 (259)
20 3pa6_A Microcephalin; BRCT dom 98.6 2.5E-08 8.5E-13 85.9 3.1 88 326-422 5-102 (107)
21 3l46_A Protein ECT2; alternati 98.5 1.1E-07 3.9E-12 82.5 5.5 85 326-419 19-110 (112)
22 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 1.4E-07 4.8E-12 88.6 4.7 88 326-416 115-214 (229)
23 3olc_X DNA topoisomerase 2-bin 98.2 5E-07 1.7E-11 89.9 3.8 85 325-416 196-286 (298)
24 2coe_A Deoxynucleotidyltransfe 98.1 5E-06 1.7E-10 73.2 6.5 85 324-417 16-116 (120)
25 3ef0_A RNA polymerase II subun 98.0 3.5E-06 1.2E-10 86.6 4.6 82 325-414 279-371 (372)
26 1l0b_A BRCA1; TANDEM-BRCT, thr 98.0 6.3E-06 2.1E-10 77.3 5.2 114 328-449 4-145 (229)
27 1t15_A Breast cancer type 1 su 97.9 1.5E-05 5E-10 73.7 6.6 78 331-416 4-93 (214)
28 3ef1_A RNA polymerase II subun 97.9 6.6E-06 2.3E-10 86.4 3.8 83 324-414 348-441 (442)
29 2etx_A Mediator of DNA damage 97.7 1.7E-05 5.7E-10 74.5 4.3 84 326-416 113-203 (209)
30 2nte_A BARD-1, BRCA1-associate 97.7 6.7E-05 2.3E-09 69.9 8.2 113 331-451 2-134 (210)
31 2etx_A Mediator of DNA damage 97.6 2.3E-05 7.8E-10 73.5 3.2 78 328-415 9-91 (209)
32 3al2_A DNA topoisomerase 2-bin 97.6 3.4E-05 1.2E-09 74.2 4.5 81 330-416 8-95 (235)
33 3al2_A DNA topoisomerase 2-bin 97.6 1.5E-05 5.2E-10 76.7 1.5 86 326-415 133-229 (235)
34 1kzy_C Tumor suppressor P53-bi 97.5 2.3E-05 7.9E-10 76.3 2.1 87 325-411 152-248 (259)
35 2l42_A DNA-binding protein RAP 97.5 3.2E-05 1.1E-09 66.1 1.8 78 326-414 9-94 (106)
36 3sqd_A PAX-interacting protein 97.4 5E-05 1.7E-09 72.3 2.6 78 329-415 14-98 (219)
37 3u3z_A Microcephalin; DNA repa 97.4 8.6E-05 3E-09 69.5 4.2 79 332-418 11-98 (199)
38 3olc_X DNA topoisomerase 2-bin 97.4 7.8E-05 2.7E-09 74.1 4.0 112 326-446 103-223 (298)
39 2vxb_A DNA repair protein RHP9 97.2 0.00023 8E-09 68.6 4.9 81 323-409 146-241 (241)
40 3l41_A BRCT-containing protein 97.1 0.00014 4.8E-09 69.5 1.8 63 345-416 21-88 (220)
41 2dun_A POL MU, DNA polymerase 95.9 0.0022 7.5E-08 57.4 1.5 85 324-416 6-108 (133)
42 3l41_A BRCT-containing protein 93.2 0.064 2.2E-06 51.0 4.3 78 325-406 110-206 (220)
43 3sqd_A PAX-interacting protein 92.4 0.09 3.1E-06 49.8 4.0 86 325-412 119-216 (219)
44 1l7b_A DNA ligase; BRCT, autos 88.2 0.25 8.6E-06 41.0 2.6 71 325-403 4-80 (92)
45 2k6g_A Replication factor C su 86.0 0.43 1.5E-05 40.8 2.9 71 326-404 30-108 (109)
46 2ebu_A Replication factor C su 81.5 1.1 3.7E-05 38.6 3.6 70 326-403 20-97 (112)
47 2cok_A Poly [ADP-ribose] polym 76.4 1.1 3.7E-05 38.6 2.0 78 326-411 8-104 (113)
48 2k2w_A Recombination and DNA r 61.2 7.5 0.00026 34.0 4.0 37 324-360 9-46 (118)
49 3huf_A DNA repair and telomere 48.0 9.2 0.00031 38.7 2.8 67 329-403 113-187 (325)
50 3qbz_A DDK kinase regulatory s 34.9 24 0.00084 32.3 3.2 54 322-383 52-120 (160)
51 3t7k_A RTT107, regulator of TY 34.3 12 0.00041 36.7 1.1 61 348-414 42-118 (256)
52 1j9i_A GPNU1 DBD;, terminase s 32.3 42 0.0014 25.2 3.7 49 19-72 2-51 (68)
53 3oq4_A DBF4, protein DNA52; DD 29.2 51 0.0017 29.4 4.1 32 343-382 33-64 (134)
No 1
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=244.89 Aligned_cols=92 Identities=53% Similarity=1.006 Sum_probs=86.8
Q ss_pred hhhhcCCCCCceEEEecCCchhhHHHHhHhcCceeecCC---CCCCCCCCCCCceEEEecCCCCCCccCCceEeecceee
Q 035822 322 TKECKNLFKNMRFFLSREVPRESMLFVIPAFGGTVSWEG---EGAPFSETDQSITHQIVDRPTQGHVYLSREYVQPQWVY 398 (471)
Q Consensus 322 ~~~~~~LF~g~~FfI~REvPre~LefiIrs~GG~V~wd~---~~~~~~e~d~~ITH~IvDRP~~~~~~~~r~YVQPQWVf 398 (471)
.++.++||+|++|||+||+|+++|+|+|++|||+|+|+. +|+||.++|++|||+|+|||+..++..+|+||||||||
T Consensus 6 ~~~~~~LF~g~~F~i~~e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~~~~~r~~VqPqWV~ 85 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQWVF 85 (100)
T ss_dssp CSCSCCTTSSCEEECCSSSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSCCBTTBEEECTHHHH
T ss_pred cCchHHHcCCcEEEEecCCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhhhcCCCeEEcchHHH
Confidence 356789999999999999999999999999999999994 69999999999999999999987788999999999999
Q ss_pred eeccCCcccCCCCCC
Q 035822 399 DCVNTRIILPTDAYM 413 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~ 413 (471)
||+|++.|||+++|+
T Consensus 86 Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 86 DSVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHHTSCCCTTTCC
T ss_pred HHHhcCCcCChhhcC
Confidence 999999999999996
No 2
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-21 Score=188.76 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=91.1
Q ss_pred hcCCCCCceEEEecC---------CchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC---ccCCceEe
Q 035822 325 CKNLFKNMRFFLSRE---------VPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH---VYLSREYV 392 (471)
Q Consensus 325 ~~~LF~g~~FfI~RE---------vPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~---~~~~r~YV 392 (471)
.++||+|++|||.++ +|++.|+++|++|||+++|+....++.. ..||+|+|||+... ...++.||
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~---~~~~iI~~~~t~k~~~~~~~~~~vV 78 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSI---GDVRLISCKTTTECKALIDRGYDIL 78 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCS---SCCEEEECSCCGGGGGGTTTTCCCB
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCc---cceEEEecCCcHHHHHHHhCCCCEE
Confidence 578999999999654 6999999999999999999654444432 14999999998742 22468999
Q ss_pred ecceeeeeccCCcccCCCCC---CCCCCCCCccCCCccCCCCCCCCCh
Q 035822 393 QPQWVYDCVNTRIILPTDAY---MVGRVPPPHLSPFVDNEEEGYVPDY 437 (471)
Q Consensus 393 QPQWVfDcvN~~~lLp~~~Y---~pG~~LPPHLSPFv~~~~~~YvP~~ 437 (471)
||||||||||++.|||+++| +.+..+++|++++++.-.++|.++-
T Consensus 79 ~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~ 126 (264)
T 1z56_C 79 HPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDI 126 (264)
T ss_dssp CSSTTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCC
T ss_pred echHHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCC
Confidence 99999999999999999998 4577899999999998888998874
No 3
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.80 E-value=5.9e-21 Score=160.11 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=69.4
Q ss_pred hhhcCCCCCceEEEecCCchh-hHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCccCCceEeecceeeeec
Q 035822 323 KECKNLFKNMRFFLSREVPRE-SMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVYLSREYVQPQWVYDCV 401 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~REvPre-~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~~~r~YVQPQWVfDcv 401 (471)
+..-+||+|++|||++|+|.. .|++.|.+|||.|+|+ .+.++|||+|+||+ ...++.|||||||||||
T Consensus 11 ~~LpdiFsg~~~~l~~~v~~~~~l~RyiiAfgG~v~~~-------~~~~~vTHvI~~~~----~~~~~~~V~p~WI~dcI 79 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQE-------FDMTSATHVLGSRD----KNPAAQQVSPEWIWACI 79 (88)
T ss_dssp CCCCCCSTTCEECCCTTSTTHHHHHHHHHHTTCEECCG-------GGGGGCSEEESCCT----TCTTSEEECHHHHHHHH
T ss_pred CcCChhhcCeEEEccCCcCchhhheeeeeecCCEEecc-------cCCCcCeEEecCCC----cCCCCcEEchHHHHHHH
Confidence 457789999999999999998 9999999999999994 34468999999997 46799999999999999
Q ss_pred cCCcccCCC
Q 035822 402 NTRIILPTD 410 (471)
Q Consensus 402 N~~~lLp~~ 410 (471)
|+|+|||++
T Consensus 80 ~k~~Ll~~~ 88 (88)
T 3pc7_A 80 RKRRLVAPS 88 (88)
T ss_dssp HHTSCCSCC
T ss_pred hCCcccCCC
Confidence 999999974
No 4
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.78 E-value=6.9e-20 Score=157.77 Aligned_cols=82 Identities=26% Similarity=0.513 Sum_probs=72.3
Q ss_pred hcCCCCCceEEEecCCc---hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCC------CCccCCceEeecc
Q 035822 325 CKNLFKNMRFFLSREVP---RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQ------GHVYLSREYVQPQ 395 (471)
Q Consensus 325 ~~~LF~g~~FfI~REvP---re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~------~~~~~~r~YVQPQ 395 (471)
.-++|+|++|||++++| +..|++.|.+|||.|+|. . ++++||+|+|||.- .+...++.+||||
T Consensus 4 Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~-------~-~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~ 75 (104)
T 3pc6_A 4 LPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDY-------M-NERVQFVITAQEWDPNFEEALMENPSLAFVRPR 75 (104)
T ss_dssp CCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSS-------C-CTTCCEEEESSCCCHHHHHHHTTCTTCEEECHH
T ss_pred cchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcc-------c-CCCceEEEeCCCCChhHHHHhhhCCCCeEEccH
Confidence 35699999999999999 788999999999999984 2 46899999999842 2456799999999
Q ss_pred eeeeeccCCcccCCCCCCC
Q 035822 396 WVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~p 414 (471)
|||||+|++++||.++|+.
T Consensus 76 WI~~Ci~~~klvp~~~y~~ 94 (104)
T 3pc6_A 76 WIYSCNEKQKLLPHQLYGV 94 (104)
T ss_dssp HHHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHhcCccCCccccee
Confidence 9999999999999999975
No 5
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.71 E-value=2.1e-18 Score=152.66 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=75.1
Q ss_pred hhcCCCCCceEEEe--cCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC-C-----ccCCceEeecc
Q 035822 324 ECKNLFKNMRFFLS--REVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG-H-----VYLSREYVQPQ 395 (471)
Q Consensus 324 ~~~~LF~g~~FfI~--REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~-~-----~~~~r~YVQPQ 395 (471)
....||+||+|||+ ++.+++.|.++|+++||+|..+- ++.|||+|+++|... . ...++.||+||
T Consensus 36 ~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l--------~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~ 107 (132)
T 1wf6_A 36 APEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQL--------NEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAK 107 (132)
T ss_dssp CCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSC--------CSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHH
T ss_pred ccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcC--------CCCCeEEEECCchHHHHHHHHhhCCCCeEechH
Confidence 34689999999999 88899999999999999998742 478999999998542 1 11467999999
Q ss_pred eeeeeccCCcccCCCCCCCCCCCCCccC
Q 035822 396 WVYDCVNTRIILPTDAYMVGRVPPPHLS 423 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~pG~~LPPHLS 423 (471)
||+||++++.+||.++| +|||||
T Consensus 108 Wv~dsi~~~~ll~e~~Y-----~~~~~s 130 (132)
T 1wf6_A 108 WLLECFSKGYMLSEEPY-----IHSGPS 130 (132)
T ss_dssp HHHHHHHHSSCCCSGGG-----BCCCSC
T ss_pred HHHHHHHcCCcCCHhhc-----cCCCCC
Confidence 99999999999999999 789998
No 6
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=142.52 Aligned_cols=85 Identities=13% Similarity=0.309 Sum_probs=72.1
Q ss_pred hhhcCCCCCceEEEe--cCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC--CccCCceEeecceee
Q 035822 323 KECKNLFKNMRFFLS--REVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG--HVYLSREYVQPQWVY 398 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~--REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~--~~~~~r~YVQPQWVf 398 (471)
...++||+|++|||+ ++.+++.|+.+|+++||.+.++ .++..+||+|++++... ....+..+|+||||+
T Consensus 7 ~~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~-------~~~~~~THlI~~~~~~~k~~~~~~~~iV~p~Wl~ 79 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVY-------YSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIV 79 (97)
T ss_dssp SCCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSS-------CCSSSCCEEECSCCCTTHHHHTSSSCCBCTHHHH
T ss_pred CCCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeee-------cCCCCCEEEEecCCChHHHHHhcCCCEeChHHHH
Confidence 346789999999999 5688999999999999998874 23367999999998543 122488999999999
Q ss_pred eeccCCcccCCCCCCC
Q 035822 399 DCVNTRIILPTDAYMV 414 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~p 414 (471)
||+|++.+||.++|.+
T Consensus 80 dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 80 ESIKAGRLLSYIPYQL 95 (97)
T ss_dssp HHHHHTSCCCSGGGBS
T ss_pred HHHHcCCccCchHcEe
Confidence 9999999999999975
No 7
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.6e-16 Score=127.88 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=70.1
Q ss_pred hhcCCCCCceEEEec--CCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC--ccCCceEeecceeee
Q 035822 324 ECKNLFKNMRFFLSR--EVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH--VYLSREYVQPQWVYD 399 (471)
Q Consensus 324 ~~~~LF~g~~FfI~R--EvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~--~~~~r~YVQPQWVfD 399 (471)
..+++|+|++|||+. +.+++.|+.+|+++||.++++.. .++.+||.|++++...+ ...+..+|+||||+|
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~------~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~d 76 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLS------SKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVD 76 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCC------CTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHH
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEec------CCCceEEEEecCCCHHHHHHcCCCCEEcccHHHH
Confidence 357899999999995 56899999999999999997531 13689999999986432 235889999999999
Q ss_pred eccCCcccCCCCCCC
Q 035822 400 CVNTRIILPTDAYMV 414 (471)
Q Consensus 400 cvN~~~lLp~~~Y~p 414 (471)
|++++.+||.++|..
T Consensus 77 ci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 77 SVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHTSCCCGGGGBC
T ss_pred HHHcCCcCChhhccc
Confidence 999999999999974
No 8
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.55 E-value=1e-15 Score=149.70 Aligned_cols=115 Identities=18% Similarity=0.368 Sum_probs=81.8
Q ss_pred hhhcCCCCCceEEEec---CCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC--Ccc-C-CceEeecc
Q 035822 323 KECKNLFKNMRFFLSR---EVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG--HVY-L-SREYVQPQ 395 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~R---EvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~--~~~-~-~r~YVQPQ 395 (471)
++.++||+|++|||.+ +.+++.|+.+|++|||.|+|+. ++..||+|+|+++.. ... . .+.+|+||
T Consensus 5 ~~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~--------~~~t~~iIa~~~~~k~~~~~~~g~~~IV~p~ 76 (263)
T 3ii6_X 5 SKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNP--------GPDTYCVIAGSENIRVKNIILSNKHDVVKPA 76 (263)
T ss_dssp -CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSC--------CTTEEEEECSSCCHHHHHHHHSCSCCEECHH
T ss_pred CcCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecC--------CCCEEEEEeCCCCHHHHHHHhcCCCCEeehH
Confidence 4578999999999976 6899999999999999999964 245677799998752 111 2 48999999
Q ss_pred eeeeeccCCcccCCCCCCCCCCCC---CccCCCccCCCCCCCCC-hHHHHHHHH
Q 035822 396 WVYDCVNTRIILPTDAYMVGRVPP---PHLSPFVDNEEEGYVPD-YAETIKRLK 445 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~pG~~LP---PHLSPFv~~~~~~YvP~-~~~~l~~l~ 445 (471)
||+||+|++.+||.++|..-..-+ -+++--+|.=.+.|..+ ...+|.++-
T Consensus 77 Wv~Dci~~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll 130 (263)
T 3ii6_X 77 WLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVF 130 (263)
T ss_dssp HHHHHHHHTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHH
Confidence 999999999999999996553222 12222333223456555 345555553
No 9
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.47 E-value=1.3e-14 Score=136.41 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=66.2
Q ss_pred hcCCCCCc-eEEEec--CCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCccCCceEeecceeeeec
Q 035822 325 CKNLFKNM-RFFLSR--EVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVYLSREYVQPQWVYDCV 401 (471)
Q Consensus 325 ~~~LF~g~-~FfI~R--EvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~~~r~YVQPQWVfDcv 401 (471)
..+||+|+ .||++. +.|++.|+.+|+++||+|.|+.. + .++.|.+.+ ..+..++.||+||||||||
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-------~--~~iiI~~~~--~~~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-------Q--ASIVIGPYS--GKKKATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-------G--CSEEESCCC--SCCCTTCEEECHHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-------C--CEEEEeCCc--hhccCCCcEEChhHHHHHH
Confidence 45899999 578874 67899999999999999999742 1 234565533 3456789999999999999
Q ss_pred cCCcccCCCCCCCCC
Q 035822 402 NTRIILPTDAYMVGR 416 (471)
Q Consensus 402 N~~~lLp~~~Y~pG~ 416 (471)
|++.+||.++|++|+
T Consensus 185 ~~~~llp~~~Y~~~~ 199 (199)
T 3u3z_A 185 TQHKVCAPENYLLSQ 199 (199)
T ss_dssp HHTSCCCGGGGBCC-
T ss_pred HcCCcCChHhccCCC
Confidence 999999999999996
No 10
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.38 E-value=3e-13 Score=126.69 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=66.6
Q ss_pred hcCCCCCceEEEecC---CchhhHHHHhHhcCceeec-CCC----------CCCC----CCCCCCceEEEecCCCCCC--
Q 035822 325 CKNLFKNMRFFLSRE---VPRESMLFVIPAFGGTVSW-EGE----------GAPF----SETDQSITHQIVDRPTQGH-- 384 (471)
Q Consensus 325 ~~~LF~g~~FfI~RE---vPre~LefiIrs~GG~V~w-d~~----------~~~~----~e~d~~ITH~IvDRP~~~~-- 384 (471)
...||+|++||++.+ .+++.|+.+|+++||.|.. .+. ..+| +.+++.+||+||++|....
T Consensus 101 ~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~ 180 (210)
T 2nte_A 101 LPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHP 180 (210)
T ss_dssp CCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCC
T ss_pred cccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCH
Confidence 468999999999874 6799999999999999884 432 1222 2334779999999996321
Q ss_pred -cc-CCc-eEeecceeeeeccCCcccCCC
Q 035822 385 -VY-LSR-EYVQPQWVYDCVNTRIILPTD 410 (471)
Q Consensus 385 -~~-~~r-~YVQPQWVfDcvN~~~lLp~~ 410 (471)
.. .++ .+|+||||+||||++.|||.+
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 11 133 799999999999999999986
No 11
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.8e-14 Score=135.83 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=50.0
Q ss_pred hhhcCCCCCceEEEec---CCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCC----------CCccC--
Q 035822 323 KECKNLFKNMRFFLSR---EVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQ----------GHVYL-- 387 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~R---EvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~----------~~~~~-- 387 (471)
.....||+||+|||++ +.+++.|+++|+++||+|+++. + .+|||||+.+.. .+.+.
T Consensus 155 ~~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l--------~-~~t~hVV~~~~~~~~~~~~~~~~~~~~~~ 225 (264)
T 1z56_C 155 RFPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQ--------S-LCNLIIIPYTDPILRKDCMNEVHEKIKEQ 225 (264)
T ss_dssp CCCCC--------------------CHHHHHHHTTSCCCCS--------S-SCSEEECCCSSTTTHHHHSSHHHHTTTTT
T ss_pred cCchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEeccc--------C-CCEEEEEeCCCccchHHHHHHHHHHHHhh
Confidence 3457899999999998 6788999999999999999863 2 678888886521 01111
Q ss_pred --------C-ceEeecceeeeeccCCcccCCCCCCC
Q 035822 388 --------S-REYVQPQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 388 --------~-r~YVQPQWVfDcvN~~~lLp~~~Y~p 414 (471)
+ ..||+||||+||+|+|.+||.++|+|
T Consensus 226 ~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 226 IKASDTIPKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp TTSSSSCCCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred cccccccCCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 2 38999999999999999999999965
No 12
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.19 E-value=1.9e-11 Score=119.48 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=65.6
Q ss_pred hhcCCCCCceEEEec---------CC---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC--------
Q 035822 324 ECKNLFKNMRFFLSR---------EV---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG-------- 383 (471)
Q Consensus 324 ~~~~LF~g~~FfI~R---------Ev---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~-------- 383 (471)
....||+||+||+.+ ++ +.+.+...|+.+||+|+++- ++++||+|++++...
T Consensus 160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l--------~~~vTHVVv~~~~~r~~~~~~~~ 231 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCL--------AEGVSHVIIGEDHSRVADFKAFR 231 (263)
T ss_dssp CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSC--------CTTCCEEEECSCCTTHHHHHHHH
T ss_pred CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCC--------CCCceEEEECCCCccHHHHHHHH
Confidence 356899999999965 23 34556889999999999962 347999999986531
Q ss_pred Ccc-CCceEeecceeeeeccCCcccCCCCCCC
Q 035822 384 HVY-LSREYVQPQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 384 ~~~-~~r~YVQPQWVfDcvN~~~lLp~~~Y~p 414 (471)
+.. .+-.+|+|+||.||+++|.+||.++|++
T Consensus 232 ~~~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 232 RTFKRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp HTCSSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred hhcCCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 111 2458999999999999999999999974
No 13
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=107.63 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred hhhhhhcCCCCCceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEee
Q 035822 320 EDTKECKNLFKNMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQ 393 (471)
Q Consensus 320 ~~~~~~~~LF~g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQ 393 (471)
.......++|+|++|+|+.-.+ |+.|..+|+++||.|..+. +..+||.|++.+...+ .-.+..+|.
T Consensus 14 ~~~~~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~--------s~~~ThLI~~~~~~~K~~~A~~~gi~IV~ 85 (129)
T 2d8m_A 14 AGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDW--------TRDSTHLICAFANTPKYSQVLGLGGRIVR 85 (129)
T ss_dssp CCHHHHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSC--------CTTCCEEEESSSSCHHHHHHHHHTCEEEE
T ss_pred ccCCCccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCc--------CCCCeEEEecCCCChHHHHHHHCCCcEec
Confidence 3445677899999999999874 8999999999999998752 3468999999875321 115899999
Q ss_pred cceeeeeccCCcccCCCCCCCCCCCCCccCCCcc
Q 035822 394 PQWVYDCVNTRIILPTDAYMVGRVPPPHLSPFVD 427 (471)
Q Consensus 394 PQWVfDcvN~~~lLp~~~Y~pG~~LPPHLSPFv~ 427 (471)
|+||+||++++.+||.++|.++...+..-.+..+
T Consensus 86 ~~Wl~d~~~~~~~l~e~~Y~l~~~~~~~~~~~~~ 119 (129)
T 2d8m_A 86 KEWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEAS 119 (129)
T ss_dssp THHHHHHHHTTSCCCGGGGBCSSSSCCSCCCSCC
T ss_pred HHHHHHHHHhCCcCChHhcccCCCCcCCCCccCC
Confidence 9999999999999999999887766555555433
No 14
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.08 E-value=6.4e-11 Score=100.54 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=67.2
Q ss_pred hhhcCCCCCceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecC-CCC-CC-----ccCCceEee
Q 035822 323 KECKNLFKNMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDR-PTQ-GH-----VYLSREYVQ 393 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDR-P~~-~~-----~~~~r~YVQ 393 (471)
....++|+|++|+|+...+ |..|.-+|+++||+|.++- +..+||.|+++ +.. .. +-.|..+|.
T Consensus 10 ~~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~--------s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~ 81 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSF--------DETVTHFIYQGRPNDTNREYKSVKERGVHIVS 81 (107)
T ss_dssp ----CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSC--------CTTCCEEECCCCTTCCCHHHHHHHHTTCEEEC
T ss_pred ccccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccc--------cCCceEEEecCCCCCCCHHHHHHHHCCCeEec
Confidence 4567899999999999874 8999999999999999852 35789999965 211 11 116889999
Q ss_pred cceeeeeccCCcccCCCCCCC
Q 035822 394 PQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 394 PQWVfDcvN~~~lLp~~~Y~p 414 (471)
|+||+||++++.+||.++|.+
T Consensus 82 ~~Wl~~c~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 82 EHWLLDCAQECKHLPESLYPH 102 (107)
T ss_dssp HHHHHHHHHHTSCCCGGGCCT
T ss_pred HHHHHHHHHhCCCCchhhCCC
Confidence 999999999999999999975
No 15
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.00 E-value=2e-10 Score=106.56 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=66.3
Q ss_pred hcCCCCCceEEEecC---CchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEE--EecCCCCC--------CccCCceE
Q 035822 325 CKNLFKNMRFFLSRE---VPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQ--IVDRPTQG--------HVYLSREY 391 (471)
Q Consensus 325 ~~~LF~g~~FfI~RE---vPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~--IvDRP~~~--------~~~~~r~Y 391 (471)
...||+|++||++++ .+++.|+.+|+++||.|..+....+ ....+|+ |++..... ....+..+
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~----~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~i 187 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFT----LGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV 187 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCC----CSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCE
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccc----cCCCCccEEEECCCcccchhhHHHHHHhcCCcE
Confidence 567999999999874 5799999999999999987542211 1124564 45532211 12246799
Q ss_pred eecceeeeeccCCcccCCCCCCCCC
Q 035822 392 VQPQWVYDCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 392 VQPQWVfDcvN~~~lLp~~~Y~pG~ 416 (471)
|+|+||+|||+++.++|.++|.+++
T Consensus 188 V~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 188 VTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp EEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred EeccHHHHhHhhcCcCCCcceeecc
Confidence 9999999999999999999999886
No 16
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=1.4e-09 Score=93.17 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=72.8
Q ss_pred hcCCCCCceEEEecC--CchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecceee
Q 035822 325 CKNLFKNMRFFLSRE--VPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQWVY 398 (471)
Q Consensus 325 ~~~LF~g~~FfI~RE--vPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQWVf 398 (471)
...+|+|++++++.= .-|..|.-+|..+||.++-+ .++..||.|++.+...+ ...+...|.|+|++
T Consensus 9 ~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~--------~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~ 80 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPV--------GDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFW 80 (109)
T ss_dssp CCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCT--------TCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHH
T ss_pred cCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecc--------cCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHH
Confidence 345899999999872 34788999999999998742 35789999999886432 12467899999999
Q ss_pred eeccCCcccCCCCCCCCCCCCCcc
Q 035822 399 DCVNTRIILPTDAYMVGRVPPPHL 422 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~pG~~LPPHL 422 (471)
||+..+.+|+.++|.+...-+|-+
T Consensus 81 dsi~~g~~ldE~~Y~~~~~~tp~~ 104 (109)
T 2cou_A 81 GSIQMDARAGETMYLYEKANTPES 104 (109)
T ss_dssp HHHHTTSCCCGGGTBCCCCCCSCS
T ss_pred HHHHcCCcCChhccCCCCCCCCCC
Confidence 999999999999999887655544
No 17
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.88 E-value=5.4e-10 Score=95.89 Aligned_cols=82 Identities=17% Similarity=0.329 Sum_probs=62.3
Q ss_pred hhcCCCCCceEEEe-cCC--c-hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCC--------C-Ccc-CCc
Q 035822 324 ECKNLFKNMRFFLS-REV--P-RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQ--------G-HVY-LSR 389 (471)
Q Consensus 324 ~~~~LF~g~~FfI~-REv--P-re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~--------~-~~~-~~r 389 (471)
....+|+|++||+. ..+ + ++.....++.+||+|..+ . +++|||+|||.... . ... .+-
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~-------~-~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~ 78 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPA-------Q-GPGVTHIVVDEGMDYERALRLLRLPQLPPGA 78 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCST-------T-CTTCCEEEECSSSCHHHHHHHTTCSSCCSSC
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeec-------c-CCCccEEEEcCCCCHHHHHHHHhhcccCCCc
Confidence 46789999999983 333 3 355566889999999754 2 45899999996431 1 112 356
Q ss_pred eEeecceeeeeccCCcccCCCCCC
Q 035822 390 EYVQPQWVYDCVNTRIILPTDAYM 413 (471)
Q Consensus 390 ~YVQPQWVfDcvN~~~lLp~~~Y~ 413 (471)
.+|.++||+||+.++.+|+.+.|.
T Consensus 79 ~iV~~~Wv~dci~~~~llde~~y~ 102 (106)
T 2jw5_A 79 QLVKSAWLSLCLQERRLVDVAGFS 102 (106)
T ss_dssp EEEEHHHHHHHHHTCSCCCGGGTB
T ss_pred EEecCchHHHHHhcCcccCccccc
Confidence 889999999999999999999994
No 18
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.73 E-value=3.3e-09 Score=102.56 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=67.9
Q ss_pred CCCCCceEEEecC-----CchhhHHHHhHhcCceeecCCCCCCCCCC------------------CCCceEEEecCCCCC
Q 035822 327 NLFKNMRFFLSRE-----VPRESMLFVIPAFGGTVSWEGEGAPFSET------------------DQSITHQIVDRPTQG 383 (471)
Q Consensus 327 ~LF~g~~FfI~RE-----vPre~LefiIrs~GG~V~wd~~~~~~~e~------------------d~~ITH~IvDRP~~~ 383 (471)
+||+|+.|+|++. -.++.|+-+|+++||.|.-++-..-|... +-..||.|+|+....
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 5899999999987 47899999999999999876311111100 113699999986533
Q ss_pred Ccc-----CCceEeecceeeeeccCCcccCCCCCCC
Q 035822 384 HVY-----LSREYVQPQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 384 ~~~-----~~r~YVQPQWVfDcvN~~~lLp~~~Y~p 414 (471)
.++ .|-..|.|+||.||+.++.++|.++|..
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL 116 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLL 116 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBB
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccC
Confidence 222 4679999999999999999999999986
No 19
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.58 E-value=2.4e-08 Score=97.39 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=69.6
Q ss_pred hcCCCCCceEEEecCC-------------------------------chhhHHHHhHhcCceeecCCCCCCCCCCCCCce
Q 035822 325 CKNLFKNMRFFLSREV-------------------------------PRESMLFVIPAFGGTVSWEGEGAPFSETDQSIT 373 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv-------------------------------Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~IT 373 (471)
.++||.|+.|+|+.-. .++.|+-+|+++||.|.-+...++- +....|
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~--~~~~~t 89 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQC--NTAYQC 89 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTT--TTTCEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCcccccc--ccCCCe
Confidence 5789999999995542 3468999999999999976433211 123479
Q ss_pred EEEecCCCCCCcc-----CCceEeecceeeeeccCCcccCCCCCCCC
Q 035822 374 HQIVDRPTQGHVY-----LSREYVQPQWVYDCVNTRIILPTDAYMVG 415 (471)
Q Consensus 374 H~IvDRP~~~~~~-----~~r~YVQPQWVfDcvN~~~lLp~~~Y~pG 415 (471)
|.|+|++.-..++ .|...|.|+||.||+.++.++|.++|...
T Consensus 90 ~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 90 LLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 9999996543232 58899999999999999999999999874
No 20
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.55 E-value=2.5e-08 Score=85.85 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred cCCCCCceEEEecCC------chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC----CccCCceEeecc
Q 035822 326 KNLFKNMRFFLSREV------PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG----HVYLSREYVQPQ 395 (471)
Q Consensus 326 ~~LF~g~~FfI~REv------Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~----~~~~~r~YVQPQ 395 (471)
..+|+|+++|+.--. -.+.+...++++||+|..+- +..+||.|+..+... .+..+.-.|.|+
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l--------~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~ 76 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTF--------NKQVTHVIFKDGYQSTWDKAQKRGVKLVSVL 76 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSC--------CTTCCEEEEESCCHHHHHHHHHHTCEEECHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEeccc--------CCCccEEEEeCCCChHHHHHhcCCCEEECHH
Confidence 349999999994432 23789999999999999863 357999999876531 111367899999
Q ss_pred eeeeeccCCcccCCCCCCCCCCCCCcc
Q 035822 396 WVYDCVNTRIILPTDAYMVGRVPPPHL 422 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~pG~~LPPHL 422 (471)
||.||+.++.++|.++|.+. ..|-||
T Consensus 77 Wv~~C~~~~~~vdE~~Y~i~-~~~~~~ 102 (107)
T 3pa6_A 77 WVEKCRTAGAHIDESLFPAA-NMNEHL 102 (107)
T ss_dssp HHHHHHHHTSCCCGGGSBCC-CTTTTC
T ss_pred HHHHHHHhCccCChhcccCC-CCcccc
Confidence 99999999999999999863 333444
No 21
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=82.52 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=68.5
Q ss_pred cCCCCCceEEEecCCc---hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecceee
Q 035822 326 KNLFKNMRFFLSREVP---RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQWVY 398 (471)
Q Consensus 326 ~~LF~g~~FfI~REvP---re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQWVf 398 (471)
-..|+||+++++. .+ |..|.-+|.+.||.++-+ .++..||.|++.+...+ .-.+...|.|+|++
T Consensus 19 ~p~F~g~~Ic~sG-f~~~er~~l~~~i~~~GG~~~~~--------l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~ 89 (112)
T 3l46_A 19 VPPFQDCILSFLG-FSDEEKTNMEEMTEMQGGKYLPL--------GDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFW 89 (112)
T ss_dssp CCTTTTCEECEES-CCHHHHHHHHHHHHHTTCEECCT--------TCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHH
T ss_pred CCccCCeEEEEeC-CCHHHHHHHHHHHHHcCCEECcc--------cCCCceEEEecCCchhhHHHHHHCCeeEecHHHHH
Confidence 4589999999987 44 688999999999999864 25678999999986431 12478999999999
Q ss_pred eeccCCcccCCCCCCCCCCCC
Q 035822 399 DCVNTRIILPTDAYMVGRVPP 419 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~pG~~LP 419 (471)
|||..|.+|+.+.|..-..=+
T Consensus 90 dsi~~g~~ldE~~Y~~~~~~~ 110 (112)
T 3l46_A 90 GSIQMDARAGETMYLYEKANT 110 (112)
T ss_dssp HHHHHTSCCCGGGSBCCC---
T ss_pred HHHHcCCccChhhceeccCCC
Confidence 999999999999998865433
No 22
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.42 E-value=1.4e-07 Score=88.64 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=59.8
Q ss_pred cCCCCCceEEEecC---CchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEE-EecCCC--CC---C---ccCCceEee
Q 035822 326 KNLFKNMRFFLSRE---VPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQ-IVDRPT--QG---H---VYLSREYVQ 393 (471)
Q Consensus 326 ~~LF~g~~FfI~RE---vPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~-IvDRP~--~~---~---~~~~r~YVQ 393 (471)
..||+|++||+... .+++.|+-+|+++||.|.-.....+ .+...||. |++-.. .. . ...+..+|.
T Consensus 115 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~---~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs 191 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLT---RDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVM 191 (229)
T ss_dssp --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGG---GCCSSCCEEEEC-------------------CEEE
T ss_pred hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCccccc---ccCCCceEEEEcCCccchhhhHHHHHHHcCCeEee
Confidence 48999999999764 4699999999999999986543221 23345774 444211 00 1 124678999
Q ss_pred cceeeeeccCCcccCCCCCCCCC
Q 035822 394 PQWVYDCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 394 PQWVfDcvN~~~lLp~~~Y~pG~ 416 (471)
|.||+|||.++.++|.++|....
T Consensus 192 ~~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 192 WDWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp THHHHHHHHTTSCCCGGGGBCC-
T ss_pred hhHHHHHHhcCCcCCccceEccc
Confidence 99999999999999999996653
No 23
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.23 E-value=5e-07 Score=89.91 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred hcCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecceee
Q 035822 325 CKNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQWVY 398 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQWVf 398 (471)
...+|+|++|+++.-. .|+.|.-+|.++||.++-+ .++...||.|+..+...+ +-.|.-.|.|+|+.
T Consensus 196 ~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~-------ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~ 268 (298)
T 3olc_X 196 KCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQ-------LKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFF 268 (298)
T ss_dssp BCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSS-------CCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHH
T ss_pred cccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEece-------ecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHH
Confidence 4579999999999854 5789999999999999864 334678999999985321 11478899999999
Q ss_pred eeccCCcccCCCCCCCCC
Q 035822 399 DCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~pG~ 416 (471)
||+..+.+||.++|.+..
T Consensus 269 dsi~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 269 DSIEKGFCQDESIYKTEP 286 (298)
T ss_dssp HHHHHTSCCCGGGSBSCC
T ss_pred HHHHCCCCCCchhcCCCC
Confidence 999999999999998764
No 24
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=5e-06 Score=73.19 Aligned_cols=85 Identities=16% Similarity=0.265 Sum_probs=65.9
Q ss_pred hhcCCCCCceEEE-ecCCc---hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC------------CccC
Q 035822 324 ECKNLFKNMRFFL-SREVP---RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG------------HVYL 387 (471)
Q Consensus 324 ~~~~LF~g~~FfI-~REvP---re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~------------~~~~ 387 (471)
....+|.|++.|| .+-+. ++-+..+++..||.|..+ . +++|||+|+| .+-. ..-.
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~-------l-s~~VTHVVve-~~~~~e~~~~l~~~~l~~~~ 86 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENE-------L-SDSVTHIVAE-NNSGSDVLEWLQAQKVQVSS 86 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSS-------C-CTTCCEEEES-SCCHHHHHHHHHHCCCCCSS
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeec-------c-CCCcCEEEec-CCCHHHHHHHHhcccccccc
Confidence 4568999999999 55554 588889999999999864 2 6789999998 3211 0112
Q ss_pred CceEeecceeeeeccCCcccCCCCCCCCCC
Q 035822 388 SREYVQPQWVYDCVNTRIILPTDAYMVGRV 417 (471)
Q Consensus 388 ~r~YVQPQWVfDcvN~~~lLp~~~Y~pG~~ 417 (471)
+..+|.-+|+-||+.++.++|.+.+..-..
T Consensus 87 ~~~lv~i~Wl~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 87 QPELLDVSWLIECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp CCEEEEHHHHHHHHHTTSCCCCSSSSBCCC
T ss_pred ccEEeecHHHHHHHHcCCccCcccceEecc
Confidence 468899999999999999999987765443
No 25
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.99 E-value=3.5e-06 Score=86.62 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=68.5
Q ss_pred hcCCCCCceEEEecCCch------hhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC-----CccCCceEee
Q 035822 325 CKNLFKNMRFFLSREVPR------ESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG-----HVYLSREYVQ 393 (471)
Q Consensus 325 ~~~LF~g~~FfI~REvPr------e~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~-----~~~~~r~YVQ 393 (471)
.+.+|+|++++++.-.|. ..|.-+|.++||.++++- +..+||.|+.++... ....+.-.|.
T Consensus 279 k~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~v--------s~~vTHLVa~~~~t~K~~~A~~~~~I~IV~ 350 (372)
T 3ef0_A 279 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF--------SVPPTHLIAAKIRTEKVKKAVSMGNIKVVK 350 (372)
T ss_dssp HTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSS--------SSCCSEEEECSCCCHHHHHHHHSSSCCEEE
T ss_pred HhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcC--------CCCceEEEEcCCCchHHHHHHhcCCCEEEc
Confidence 457999999999988753 789999999999999863 357899999987542 1224678999
Q ss_pred cceeeeeccCCcccCCCCCCC
Q 035822 394 PQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 394 PQWVfDcvN~~~lLp~~~Y~p 414 (471)
|+|+.||+..+..+|.++|..
T Consensus 351 ~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 351 LNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHHHHHHTTSCCCGGGGBC
T ss_pred HHHHHHHHHhCCcCChhhcee
Confidence 999999999999999999963
No 26
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.95 E-value=6.3e-06 Score=77.33 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCC-----CCCcc-----CCceEeecc
Q 035822 328 LFKNMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPT-----QGHVY-----LSREYVQPQ 395 (471)
Q Consensus 328 LF~g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~-----~~~~~-----~~r~YVQPQ 395 (471)
-+++++|.++.=.+ +..|+-+++.+||.+..+- ++.+||.|+..+. -..++ .|.-+|.|+
T Consensus 4 ~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~--------~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~ 75 (229)
T 1l0b_A 4 AERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVI--------TEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYS 75 (229)
T ss_dssp CCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSC--------CSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCc--------CCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHH
Confidence 46788888876333 5679999999999998531 3679999999873 11222 478899999
Q ss_pred eeeeeccCCcccCCCCCCCCCCCC---C----------ccCCCccCC---CCCCCCChHHHHHHHHHHhh
Q 035822 396 WVYDCVNTRIILPTDAYMVGRVPP---P----------HLSPFVDNE---EEGYVPDYAETIKRLKSAAK 449 (471)
Q Consensus 396 WVfDcvN~~~lLp~~~Y~pG~~LP---P----------HLSPFv~~~---~~~YvP~~~~~l~~l~~~~~ 449 (471)
||.||+.++.+||.++|.....-+ - ...+|-... -|.+..+.+.+|.++-.+..
T Consensus 76 Wl~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~G 145 (229)
T 1l0b_A 76 WVIKSIQERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCG 145 (229)
T ss_dssp HHHHHHTTTSCCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCcCChHHeEeccccccccccccchhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHHCC
Confidence 999999999999999997754221 1 124553321 24455556677777765433
No 27
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.90 E-value=1.5e-05 Score=73.68 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=58.6
Q ss_pred CceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCC-----CCCcc-----CCceEeecceee
Q 035822 331 NMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPT-----QGHVY-----LSREYVQPQWVY 398 (471)
Q Consensus 331 g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~-----~~~~~-----~~r~YVQPQWVf 398 (471)
|++|.++.=. -++.|.-+|+.+||.+..+- ++.+||.|+..+. -..++ .|.-+|.|+||.
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~--------~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~ 75 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLI--------TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVT 75 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCEECSSC--------CTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCEEeCcc--------CCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHH
Confidence 4555555422 25678899999999988532 3579999999873 11111 578899999999
Q ss_pred eeccCCcccCCCCCCCCC
Q 035822 399 DCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~pG~ 416 (471)
||+.++.++|.++|....
T Consensus 76 ~~~~~~~~~~e~~y~~~~ 93 (214)
T 1t15_A 76 QSIKERKMLNEHDFEVRG 93 (214)
T ss_dssp HHHHTTSCCCGGGGBCCE
T ss_pred HHHHCCCcCChHHeEeec
Confidence 999999999999997753
No 28
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=97.85 E-value=6.6e-06 Score=86.43 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=68.7
Q ss_pred hhcCCCCCceEEEecCCc------hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC-----CccCCceEe
Q 035822 324 ECKNLFKNMRFFLSREVP------RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG-----HVYLSREYV 392 (471)
Q Consensus 324 ~~~~LF~g~~FfI~REvP------re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~-----~~~~~r~YV 392 (471)
..+.+|+|++|.++.-.| |..|.-+|.++||.++++- +...||.|+-++... .+..+.-.|
T Consensus 348 ~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~v--------s~~vTHLVa~~~~t~K~~~A~~~g~IkIV 419 (442)
T 3ef1_A 348 MKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF--------SVPPTHLIAAKIRTEKVKKAVSMGNIKVV 419 (442)
T ss_dssp HHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSS--------SSCCSEEEECSCCCHHHHHHHHHSSSEEE
T ss_pred HhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCC--------CCCceEEEeCCCCCHHHHHHHhcCCCEEE
Confidence 366799999999999775 4689999999999999863 357899999987532 122356899
Q ss_pred ecceeeeeccCCcccCCCCCCC
Q 035822 393 QPQWVYDCVNTRIILPTDAYMV 414 (471)
Q Consensus 393 QPQWVfDcvN~~~lLp~~~Y~p 414 (471)
.|+|++||+..+..+|.++|..
T Consensus 420 s~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 420 KLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp EHHHHHHHHHHTSCCCGGGTBC
T ss_pred eHHHHHHHHHcCCcCChhcccc
Confidence 9999999999999999999963
No 29
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.75 E-value=1.7e-05 Score=74.47 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=61.9
Q ss_pred cCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCcc-----CCceEeecceee
Q 035822 326 KNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVY-----LSREYVQPQWVY 398 (471)
Q Consensus 326 ~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-----~~r~YVQPQWVf 398 (471)
..||+|++||++..+ +++.|.-+|+++||+|.-....+ . .-+|.|+..+.-.... .+-..|-+.||+
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~-~-----~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~ 186 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRS-Y-----KPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLL 186 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCS-C-----CTTEEEECCGGGGGGCHHHHHHTCCEECTHHHH
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCC-C-----CCceEEEECcccHHHHHHHHHCCCeEEcHHHHH
Confidence 489999999998864 68999999999999998543211 1 1157777554321111 345789999999
Q ss_pred eeccCCcccCCCCCCCCC
Q 035822 399 DCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 399 DcvN~~~lLp~~~Y~pG~ 416 (471)
|||..+.| +.+.|....
T Consensus 187 ~sI~~q~l-d~e~y~l~~ 203 (209)
T 2etx_A 187 TGVLKQEA-KPEAFVLSP 203 (209)
T ss_dssp HHHHHTCC-CGGGGBCCT
T ss_pred HHHHhccc-ChHHheecC
Confidence 99999886 999997754
No 30
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.73 E-value=6.7e-05 Score=69.86 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=75.0
Q ss_pred CceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCC--CCCCcc-----CCceEeecceeeeec
Q 035822 331 NMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRP--TQGHVY-----LSREYVQPQWVYDCV 401 (471)
Q Consensus 331 g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP--~~~~~~-----~~r~YVQPQWVfDcv 401 (471)
|++|.++.=.+ ++.|.-+++.+||.+..+- ++++||.|+... .-..++ .|.-+|.|+||.||+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~--------~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~ 73 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEF--------DSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACL 73 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSC--------CTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCC--------CCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHH
Confidence 34455444222 5678999999999998642 367999999763 211111 578899999999999
Q ss_pred cCCcccCCCCCCCCCCCC--------CccCCCccCC---CCCCCCChHHHHHHHHHHhhcc
Q 035822 402 NTRIILPTDAYMVGRVPP--------PHLSPFVDNE---EEGYVPDYAETIKRLKSAAKNE 451 (471)
Q Consensus 402 N~~~lLp~~~Y~pG~~LP--------PHLSPFv~~~---~~~YvP~~~~~l~~l~~~~~~~ 451 (471)
.++.++|.++|......+ .+...|-... -|.+.++.+..|.+|-.+..-.
T Consensus 74 ~~~~~~~e~~y~~~~~~~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~ 134 (210)
T 2nte_A 74 RRKVCEQEEKYEIPEGPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQ 134 (210)
T ss_dssp HHTSCCCGGGTBCTTHHHHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCE
T ss_pred HcCCcCChhhccCCCCChhhhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCE
Confidence 999999999998763210 1123453221 3456666677888876554433
No 31
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.62 E-value=2.3e-05 Score=73.51 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=56.9
Q ss_pred CCCCceEEEecCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCcc-----CCceEeecceeeeecc
Q 035822 328 LFKNMRFFLSREVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVY-----LSREYVQPQWVYDCVN 402 (471)
Q Consensus 328 LF~g~~FfI~REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-----~~r~YVQPQWVfDcvN 402 (471)
.-+++++.++.=.+ ..++-+|+++||.|.-+. ...||.|++++.-..++ .|.-+|.|+||.||+.
T Consensus 9 ~~~~~~v~~sG~~~-~~~~~~i~~lGg~~~~~~---------~~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~ 78 (209)
T 2etx_A 9 ESTAPKVLFTGVVD-ARGERAVLALGGSLAGSA---------AEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRK 78 (209)
T ss_dssp ---CCEEEECSSCC-HHHHHHHHHTTCEECSST---------TTCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHH
T ss_pred cCCCcEEEEeCCCc-HHHHHHHHHCCCEEeCCC---------CCceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHH
Confidence 34455555544334 346899999999987542 13799999976432222 4788999999999999
Q ss_pred CCcccCCCCCCCC
Q 035822 403 TRIILPTDAYMVG 415 (471)
Q Consensus 403 ~~~lLp~~~Y~pG 415 (471)
++.+||.++|...
T Consensus 79 ~~~~l~e~~y~~~ 91 (209)
T 2etx_A 79 AGFFLPPDEYVVT 91 (209)
T ss_dssp HTSCCCSGGGBCC
T ss_pred cCCCCChhhcccc
Confidence 9999999999875
No 32
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.62 E-value=3.4e-05 Score=74.24 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=62.7
Q ss_pred CCceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCcc-----CCceEeecceeeeecc
Q 035822 330 KNMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVY-----LSREYVQPQWVYDCVN 402 (471)
Q Consensus 330 ~g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-----~~r~YVQPQWVfDcvN 402 (471)
++.+|-++.=.+ +..+.-+|+..||.|+-+. .+ ++..||.|+..|.-..++ .|.-+|.|+||.||+.
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~---~~---~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQ---CF---DPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRT 81 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSS---SC---CTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccC---CC---CCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence 456677764323 5778999999999997421 11 357899999998543333 6999999999999999
Q ss_pred CCcccCCCCCCCCC
Q 035822 403 TRIILPTDAYMVGR 416 (471)
Q Consensus 403 ~~~lLp~~~Y~pG~ 416 (471)
+|.+||.++|..+.
T Consensus 82 ~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 82 AGHFVQEEDYEWGS 95 (235)
T ss_dssp HTSCCCSGGGBTTS
T ss_pred cCCCCChhceeecC
Confidence 99999999998774
No 33
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.59 E-value=1.5e-05 Score=76.71 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=64.1
Q ss_pred cCCCCCceEEEecCCch-hhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCC--CC--------ccCCceEeec
Q 035822 326 KNLFKNMRFFLSREVPR-ESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQ--GH--------VYLSREYVQP 394 (471)
Q Consensus 326 ~~LF~g~~FfI~REvPr-e~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~--~~--------~~~~r~YVQP 394 (471)
..||+|++|||..+.|+ +.|.-||+++||.|.-.. .++. ....||.+||-... .. ...+-.++.+
T Consensus 133 ~~lF~g~~v~l~~~~~~~~~l~~ii~agGg~vl~~~--~~~~--~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ 208 (235)
T 3al2_A 133 EGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGH--SVPL--FKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRT 208 (235)
T ss_dssp SSTTTTCEEEEECCHHHHHHHHHHHHHTTCEECSSC--CGGG--GGGCSEEEECC--------CCCHHHHHHTTCEEEET
T ss_pred CCCCCCcEEEEecCCCcHHHHHHHHHcCCcEEecCC--CCCc--cccCceEEEecccCCccchhHHHHHHHHcCCcEEcH
Confidence 58999999999987654 789999999999997332 2222 12369999995321 10 1146779999
Q ss_pred ceeeeeccCCcccCCCCCCCC
Q 035822 395 QWVYDCVNTRIILPTDAYMVG 415 (471)
Q Consensus 395 QWVfDcvN~~~lLp~~~Y~pG 415 (471)
.||.|||..+.+.+.+.|..-
T Consensus 209 ewlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 209 EYIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHHhcCCCCChhheEcc
Confidence 999999999999999999653
No 34
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.54 E-value=2.3e-05 Score=76.30 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=60.4
Q ss_pred hcCCCCCceEEEecCC---chhhHHHHhHhcCceeecCCC-CCCCCCCCCCceEEEecCCC-CCC-----ccCCceEeec
Q 035822 325 CKNLFKNMRFFLSREV---PRESMLFVIPAFGGTVSWEGE-GAPFSETDQSITHQIVDRPT-QGH-----VYLSREYVQP 394 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv---Pre~LefiIrs~GG~V~wd~~-~~~~~e~d~~ITH~IvDRP~-~~~-----~~~~r~YVQP 394 (471)
..+||+|++||+...+ .++.+++||+++||.|..... ...-.+.+...+|+||.... ... ...+.-.|.+
T Consensus 152 ~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~ 231 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQ 231 (259)
T ss_dssp CCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECH
T ss_pred cCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecH
Confidence 4689999999998876 568899999999999875431 11011222356666664322 111 1135678999
Q ss_pred ceeeeeccCCcccCCCC
Q 035822 395 QWVYDCVNTRIILPTDA 411 (471)
Q Consensus 395 QWVfDcvN~~~lLp~~~ 411 (471)
.||+|||..+.+||.+.
T Consensus 232 EWv~~sI~~~~ll~~~~ 248 (259)
T 1kzy_C 232 EWVIQCLIVGERIGFKQ 248 (259)
T ss_dssp HHHHHHHHHTSCCCTTS
T ss_pred HHHHHHHHhCCcCCCCc
Confidence 99999999999998864
No 35
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=3.2e-05 Score=66.08 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=57.4
Q ss_pred cCCCCCceEEEecCCc-------hhhHHHHhHhcCceeecCCC-CCCCCCCCCCceEEEecCCCCCCccCCceEeeccee
Q 035822 326 KNLFKNMRFFLSREVP-------RESMLFVIPAFGGTVSWEGE-GAPFSETDQSITHQIVDRPTQGHVYLSREYVQPQWV 397 (471)
Q Consensus 326 ~~LF~g~~FfI~REvP-------re~LefiIrs~GG~V~wd~~-~~~~~e~d~~ITH~IvDRP~~~~~~~~r~YVQPQWV 397 (471)
...|+|++|||.|+.. .+.|+-+|++.||.|..+.. ++ .+ -+.||--+- --++-.|-|-||
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s----~~---~~yVVSpyN----~t~LpTVtpTYI 77 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRES----KE---NVFIVSPYN----HTNLPTVTPTYI 77 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCC----SS---CCCCBCTTC----CCSSSBCCTTHH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccc----cC---CeEEEeCCC----CCCCccccHHHH
Confidence 4469999999999854 48999999999999986642 22 01 122222211 025567889999
Q ss_pred eeeccCCcccCCCCCCC
Q 035822 398 YDCVNTRIILPTDAYMV 414 (471)
Q Consensus 398 fDcvN~~~lLp~~~Y~p 414 (471)
-+||-+++||++++|+.
T Consensus 78 ~aC~~~nTLLnv~~YLv 94 (106)
T 2l42_A 78 KACCQSNSLLNMENYLV 94 (106)
T ss_dssp HHHHHSTTSCGGGGCCB
T ss_pred HHHHhcCceeccccccc
Confidence 99999999999999973
No 36
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.42 E-value=5e-05 Score=72.30 Aligned_cols=78 Identities=18% Similarity=0.358 Sum_probs=60.2
Q ss_pred CCCceEEEecCCc--hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCcc-----CCceEeecceeeeec
Q 035822 329 FKNMRFFLSREVP--RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVY-----LSREYVQPQWVYDCV 401 (471)
Q Consensus 329 F~g~~FfI~REvP--re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-----~~r~YVQPQWVfDcv 401 (471)
..|+++.++.=.+ ++.+.-+|+++||.|..+. +..||.|++++.-..++ .|.-+|.|+||.||+
T Consensus 14 ~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~---------~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~ 84 (219)
T 3sqd_A 14 ELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA---------QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECF 84 (219)
T ss_dssp GGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG---------GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC---------CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHH
Confidence 3456666665333 4678899999999997541 46799999986432122 578899999999999
Q ss_pred cCCcccCCCCCCCC
Q 035822 402 NTRIILPTDAYMVG 415 (471)
Q Consensus 402 N~~~lLp~~~Y~pG 415 (471)
.++.++|.++|...
T Consensus 85 ~~~~~l~e~~y~l~ 98 (219)
T 3sqd_A 85 RCQKFIDEQNYILR 98 (219)
T ss_dssp HHTSCCCSGGGBCC
T ss_pred HcCCCCChHhccCC
Confidence 99999999999875
No 37
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.42 E-value=8.6e-05 Score=69.50 Aligned_cols=79 Identities=11% Similarity=0.202 Sum_probs=58.4
Q ss_pred ceEEEecCCc---hhhHHHHhHhcCce-eecCCCCCCCCCCCCCceEEEecCCCCCCcc-----CCceEeecceeeeecc
Q 035822 332 MRFFLSREVP---RESMLFVIPAFGGT-VSWEGEGAPFSETDQSITHQIVDRPTQGHVY-----LSREYVQPQWVYDCVN 402 (471)
Q Consensus 332 ~~FfI~REvP---re~LefiIrs~GG~-V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-----~~r~YVQPQWVfDcvN 402 (471)
-..++.+-.| +..|.-+|.++||. ++.+ -+++.||.|++.+.-..++ .|.-.|.|+||.||+.
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~--------~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~ 82 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPD--------VCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLE 82 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESS--------CCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecC--------CCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhh
Confidence 3455555554 45688899999995 5432 2467899999887322222 5788999999999999
Q ss_pred CCcccCCCCCCCCCCC
Q 035822 403 TRIILPTDAYMVGRVP 418 (471)
Q Consensus 403 ~~~lLp~~~Y~pG~~L 418 (471)
+|.+||.++|......
T Consensus 83 ~g~~l~e~~y~~~~~~ 98 (199)
T 3u3z_A 83 LGHWISEEPFELSHHF 98 (199)
T ss_dssp HTSCCCSGGGBCTTTC
T ss_pred CCCCCChhhccccCCc
Confidence 9999999999776543
No 38
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=97.41 E-value=7.8e-05 Score=74.10 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=78.0
Q ss_pred cCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecceeee
Q 035822 326 KNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQWVYD 399 (471)
Q Consensus 326 ~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQWVfD 399 (471)
+..|+|++|.++.=. .++.|.-+|.++||.++-+- ++.+||.|+......+ .-.+.-.|.|+||.|
T Consensus 103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~--------t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~ 174 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDL--------NVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKT 174 (298)
T ss_dssp CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSC--------CTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHH
T ss_pred ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCc--------CCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHH
Confidence 679999999997654 47899999999999998642 3579999999764211 115789999999999
Q ss_pred eccCCcccCCCCCCCCCCCCCccCC-CccCC--CCCCCCChHHHHHHHHH
Q 035822 400 CVNTRIILPTDAYMVGRVPPPHLSP-FVDNE--EEGYVPDYAETIKRLKS 446 (471)
Q Consensus 400 cvN~~~lLp~~~Y~pG~~LPPHLSP-Fv~~~--~~~YvP~~~~~l~~l~~ 446 (471)
|+..+..++...|.. ....+|-.| |.+-. =.|+.++.+.+|.++-.
T Consensus 175 c~~~~~~~~~~~~~~-~~~~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~ 223 (298)
T 3olc_X 175 LWEKSQEKKITRYTD-INMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTV 223 (298)
T ss_dssp HHHHHHTTCCSSGGG-SCGGGGBCCTTTTCEEEECSCCHHHHHHHHHHHH
T ss_pred HHHcCCcCCcccccc-cccccccccccCCeEEEEeCCCCccHHHHHHHHH
Confidence 999999887665421 122345443 42211 23577766666665543
No 39
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.23 E-value=0.00023 Score=68.58 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=60.0
Q ss_pred hhhcCCCCCceEEEecCC---c------------hhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCccC
Q 035822 323 KECKNLFKNMRFFLSREV---P------------RESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVYL 387 (471)
Q Consensus 323 ~~~~~LF~g~~FfI~REv---P------------re~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~~ 387 (471)
....+||.|+++|+..+. | .+.+.++++++||.+ -.. . ..+..++|.|++-......-.
T Consensus 146 ~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v--~---~~~~~~~d~v~~~~~~~~~~~ 219 (241)
T 2vxb_A 146 LARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADV-EIR--P---NVAHLECDLILTMDGNIVDET 219 (241)
T ss_dssp HHCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEE-ECC--S---CCSSCCCSEEECSSSCCCSSC
T ss_pred hhcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCce-ecc--c---ccccCCccEEEECCccccccC
Confidence 345789999999996542 3 389999999999999 111 1 123467888887543333445
Q ss_pred CceEeecceeeeeccCCcccCC
Q 035822 388 SREYVQPQWVYDCVNTRIILPT 409 (471)
Q Consensus 388 ~r~YVQPQWVfDcvN~~~lLp~ 409 (471)
+.-.|.|.||.||+-.|.+|++
T Consensus 220 ~~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 220 NCPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SSCEECHHHHHHHHHHTSCTTC
T ss_pred CCCEecHHHHHHHHHhceecCC
Confidence 7899999999999999999874
No 40
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=97.09 E-value=0.00014 Score=69.51 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=51.2
Q ss_pred HHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCc-----cCCceEeecceeeeeccCCcccCCCCCCCCC
Q 035822 345 MLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHV-----YLSREYVQPQWVYDCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 345 LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~-----~~~r~YVQPQWVfDcvN~~~lLp~~~Y~pG~ 416 (471)
..-+|++.||.|..+. ...||.|++++.-..+ -.|.-.|.|+||.||+.++.++|.++|....
T Consensus 21 ~~~~i~~lGg~v~~~~---------~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d 88 (220)
T 3l41_A 21 SIDNLKKLDMSITSNP---------SKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLND 88 (220)
T ss_dssp CCGGGGGGTEEECSCT---------TTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred CcchHhhcceeeccCc---------hhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccCccccCC
Confidence 3889999999997652 2479999998743222 2588999999999999999999999998753
No 41
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=95.91 E-value=0.0022 Score=57.41 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=64.5
Q ss_pred hhcCCCCCceEEEecC-C---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC--------------c
Q 035822 324 ECKNLFKNMRFFLSRE-V---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH--------------V 385 (471)
Q Consensus 324 ~~~~LF~g~~FfI~RE-v---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~--------------~ 385 (471)
.....|.|++.||--- + =|+-|+-++++.||.|..+- .+++||+|++-..-.. .
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~--------S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~ 77 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDAC--------SSEATHVVMEETSAEEAVSWQERRMAAAPPG 77 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSC--------CTTCCEEEESSCCHHHHHHHHHHHHHHSCTT
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEecccc--------CCCceEEEecCCCHHHHHHHHHHhhcccCcC
Confidence 3457899999998643 2 26899999999999998752 4689999997543211 1
Q ss_pred cCCceEeecceeeeeccCCcccCCCCCCCCC
Q 035822 386 YLSREYVQPQWVYDCVNTRIILPTDAYMVGR 416 (471)
Q Consensus 386 ~~~r~YVQPQWVfDcvN~~~lLp~~~Y~pG~ 416 (471)
-.+-.++-..|.-||+-+|.++|++.+..-.
T Consensus 78 ~~~~~lLdisWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 78 CTPPALLDISWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp CCCCEEEEHHHHHHHHHHTSCCCCCTTTSCC
T ss_pred CCCcEEeccHHHHHHHhcCCcCCcccceEee
Confidence 1346778999999999999999997775444
No 42
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=93.24 E-value=0.064 Score=51.01 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=52.3
Q ss_pred hcCCCCCceEEEecCC----chhhHHHHhHhcCceeecCCCCCCCC------CCCCCceEEEecCCCC--CCcc------
Q 035822 325 CKNLFKNMRFFLSREV----PRESMLFVIPAFGGTVSWEGEGAPFS------ETDQSITHQIVDRPTQ--GHVY------ 386 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv----Pre~LefiIrs~GG~V~wd~~~~~~~------e~d~~ITH~IvDRP~~--~~~~------ 386 (471)
...||+|+.|||+..+ |++.|.-||+++||+|.-.+ +|. +.++. .+.|+..... +..+
T Consensus 110 ~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p---~~~~~~~~~~~~~~-~~vis~~~d~~~~~~f~~~~~~ 185 (220)
T 3l41_A 110 GPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLN---VYNKRLARHLEDGN-VVLITCNEDSHIWTNFLDNASQ 185 (220)
T ss_dssp CSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEEC---SCCHHHHHHHHHCC-EEEEECGGGHHHHTTTHHHHTT
T ss_pred CchhhhheeEEEeccccCCCCCceEEEEEecCCcEechhh---HHHHHHHHhcccCC-EEEEEeCCcchHHHHhhccccc
Confidence 3789999999999987 48999999999999987632 221 11111 3466652111 1111
Q ss_pred -CCceEeecceeeeeccCCcc
Q 035822 387 -LSREYVQPQWVYDCVNTRII 406 (471)
Q Consensus 387 -~~r~YVQPQWVfDcvN~~~l 406 (471)
.+-..+.+.||++||=.+.|
T Consensus 186 ~~~~~i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 186 NKTIFLQNYDWLIKTVLRQEI 206 (220)
T ss_dssp CTTEEEEEHHHHHHHHHHTCC
T ss_pred cceEEEechhHHHHHHHHHHc
Confidence 23348899999999876665
No 43
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=92.39 E-value=0.09 Score=49.76 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=55.0
Q ss_pred hcCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCC-C-C-CCCCCc--eEEEecCCCCCCc-----cCCceEe
Q 035822 325 CKNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAP-F-S-ETDQSI--THQIVDRPTQGHV-----YLSREYV 392 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~-~-~-e~d~~I--TH~IvDRP~~~~~-----~~~r~YV 392 (471)
...||+|++|||+.++ +++.|..+|+++||+|.-...-.. . . ..+... ..+|.. +.-... -.|-..+
T Consensus 119 ~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~-~~d~~~~~~~~~~~~~v~ 197 (219)
T 3sqd_A 119 VSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISC-ENDLHLCREYFARGIDVH 197 (219)
T ss_dssp HSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEEC-GGGGGGGHHHHHTTCCCE
T ss_pred cccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEec-ccHHHHHHHHHHCCCcEE
Confidence 5789999999999875 579999999999999986532100 0 0 001111 123323 211111 1366788
Q ss_pred ecceeeeeccCCcccCCCCC
Q 035822 393 QPQWVYDCVNTRIILPTDAY 412 (471)
Q Consensus 393 QPQWVfDcvN~~~lLp~~~Y 412 (471)
-+.||++||=.+.| ..+.|
T Consensus 198 s~E~il~~Il~q~l-d~~~~ 216 (219)
T 3sqd_A 198 NAEFVLTGVLTQTL-DYESY 216 (219)
T ss_dssp ETHHHHHHHHHTCC-CTTTS
T ss_pred eHHHHHHHHHheee-cchhc
Confidence 99999999987666 66555
No 44
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=88.19 E-value=0.25 Score=41.03 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=54.2
Q ss_pred hcCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCC----ccCCceEeecceee
Q 035822 325 CKNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGH----VYLSREYVQPQWVY 398 (471)
Q Consensus 325 ~~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~----~~~~r~YVQPQWVf 398 (471)
..+.|.|++|.+.-.. +|+.+.-+|.++||.|..+.. ...||.|+....-.+ .-.+-..|-.+|.+
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVs--------kkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~ 75 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVS--------RKTSYLVVGENPGSKLEKARALGVPTLTEEELY 75 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCS--------SSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHH
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCccc--------CCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHH
Confidence 3567999999997764 799999999999999987642 346778887653221 12578899999999
Q ss_pred eeccC
Q 035822 399 DCVNT 403 (471)
Q Consensus 399 DcvN~ 403 (471)
|+++.
T Consensus 76 ~~l~~ 80 (92)
T 1l7b_A 76 RLLEA 80 (92)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99863
No 45
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=85.98 E-value=0.43 Score=40.84 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=54.1
Q ss_pred cCCCCCceEEEecCC---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCc-----cCCceEeeccee
Q 035822 326 KNLFKNMRFFLSREV---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHV-----YLSREYVQPQWV 397 (471)
Q Consensus 326 ~~LF~g~~FfI~REv---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~-----~~~r~YVQPQWV 397 (471)
.+.|.|++|.|.-.. +|+.+.-+|.++||.|.-+.. ...+|.|+....-..+ -.|...|--+|.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVS--------kkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f 101 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS--------KKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGL 101 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCC--------TTCCEEEECBCCCHHHHHHHHHHTCEEECHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCccc--------CCceEEEECCCCChHHHHHHHHcCCeEEeHHHH
Confidence 346999999999875 799999999999999987532 3467888886532111 147888888888
Q ss_pred eeeccCC
Q 035822 398 YDCVNTR 404 (471)
Q Consensus 398 fDcvN~~ 404 (471)
+|+++.+
T Consensus 102 ~~ll~~~ 108 (109)
T 2k6g_A 102 LNLIRNL 108 (109)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8887654
No 46
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.52 E-value=1.1 Score=38.62 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=54.6
Q ss_pred cCCCCCceEEEecCC---chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCc-----cCCceEeeccee
Q 035822 326 KNLFKNMRFFLSREV---PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHV-----YLSREYVQPQWV 397 (471)
Q Consensus 326 ~~LF~g~~FfI~REv---Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~-----~~~r~YVQPQWV 397 (471)
.+.|.|++|.|.-.. +|+.+.-+|.++||+|.-... ...+|.|+....-..+ -.+...|--+|.
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVS--------kkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f 91 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS--------KKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGL 91 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCC--------SSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHH
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEecccc--------CCeeEEEecCCCChHHHHHHHHcCCeEEeHHHH
Confidence 356999999999875 799999999999999987532 3467888887543112 157889999999
Q ss_pred eeeccC
Q 035822 398 YDCVNT 403 (471)
Q Consensus 398 fDcvN~ 403 (471)
+++++.
T Consensus 92 ~~ll~~ 97 (112)
T 2ebu_A 92 LNLIRT 97 (112)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999874
No 47
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=76.43 E-value=1.1 Score=38.64 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=58.4
Q ss_pred cCCCCCceEEEecCC--chhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecC----CCC---CCccCCceEeecce
Q 035822 326 KNLFKNMRFFLSREV--PRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDR----PTQ---GHVYLSREYVQPQW 396 (471)
Q Consensus 326 ~~LF~g~~FfI~REv--Pre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDR----P~~---~~~~~~r~YVQPQW 396 (471)
.+.|.|++|.|.-.. +|+.+.-.|.+.||+|+-... ...||.|+.. +.- .-+-.+...|--+|
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~ 79 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRVVSEDF 79 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHHH
Confidence 457999999999875 689999999999999987532 3457888762 211 01226788888889
Q ss_pred ----------eeeeccCCcccCCCC
Q 035822 397 ----------VYDCVNTRIILPTDA 411 (471)
Q Consensus 397 ----------VfDcvN~~~lLp~~~ 411 (471)
+-|||+...++|.+.
T Consensus 80 l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 80 LQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp HHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred HHHHHhhchhHHHHHHHhcCCCCCC
Confidence 778888888888776
No 48
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=61.22 E-value=7.5 Score=33.98 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=32.0
Q ss_pred hhcCCCCCceEEEecCCchhhHHHHhHhcCceee-cCC
Q 035822 324 ECKNLFKNMRFFLSREVPRESMLFVIPAFGGTVS-WEG 360 (471)
Q Consensus 324 ~~~~LF~g~~FfI~REvPre~LefiIrs~GG~V~-wd~ 360 (471)
+.+.||+|.+|.....-=...|.-+|..+||... |+.
T Consensus 9 ~~~~LF~GKtFvFLn~KQ~kkl~~aV~~~GG~~~l~~e 46 (118)
T 2k2w_A 9 KRKSIFKDKVFLFLNAKQYKKLSPAVLFGGGKTDLLMG 46 (118)
T ss_dssp CCSCSSTTCEEEESCSSTHHHHHHHHHHTTCEEECCSS
T ss_pred hHHhhccCCEEEEeCHHHHHHHHHHHHhcCceEEeccc
Confidence 4688999999999988888999999999999965 643
No 49
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=47.96 E-value=9.2 Score=38.70 Aligned_cols=67 Identities=7% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCCceEEEecCCchhhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecC-CCCC-------CccCCceEeecceeeee
Q 035822 329 FKNMRFFLSREVPRESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDR-PTQG-------HVYLSREYVQPQWVYDC 400 (471)
Q Consensus 329 F~g~~FfI~REvPre~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDR-P~~~-------~~~~~r~YVQPQWVfDc 400 (471)
+..++|.+++-..+..|.-.+.+.||.+. +- ..+..||.|++. .+.. ....++-+|.|+|+-.+
T Consensus 113 W~P~Vl~~Sske~~~~L~~~L~~LGik~v-~~-------~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al 184 (325)
T 3huf_A 113 WRSMCIQFDNPEMLSQWASNLNLLGIPTG-LR-------DSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYL 184 (325)
T ss_dssp ECCCCEEESCHHHHHHHHHHHHTTTCCEE-SS-------CCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred EeeeEEEecCHHHHHHHHHHHHHcCCEEE-Ec-------cCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHH
Confidence 67888888544456668889999999987 41 123489999984 3221 23479999999999987
Q ss_pred ccC
Q 035822 401 VNT 403 (471)
Q Consensus 401 vN~ 403 (471)
.|.
T Consensus 185 ~~~ 187 (325)
T 3huf_A 185 STV 187 (325)
T ss_dssp TTC
T ss_pred HHh
Confidence 765
No 50
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=34.91 E-value=24 Score=32.26 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=37.9
Q ss_pred hhhhcCCCC-CceEEEecCCc-------h-------hhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCC
Q 035822 322 TKECKNLFK-NMRFFLSREVP-------R-------ESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQG 383 (471)
Q Consensus 322 ~~~~~~LF~-g~~FfI~REvP-------r-------e~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~ 383 (471)
...-..+|. +++||.-.--+ + .-|.--+.+.|++|.- |. |..|||+|.-||...
T Consensus 52 Q~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~------FF--d~~VTiVIT~R~i~~ 120 (160)
T 3qbz_A 52 QTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQ------FF--DTTVTIVITRRSVEN 120 (160)
T ss_dssp HHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEES------SC--CTTCCEEEESSCSSC
T ss_pred HHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeee------ec--cCCeEEEEecCcCcc
Confidence 456778998 89999976422 1 2232455799999874 22 468999999999653
No 51
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=34.29 E-value=12 Score=36.69 Aligned_cols=61 Identities=7% Similarity=0.136 Sum_probs=42.2
Q ss_pred HhHhcCceeecCCCCCCCCCCCCCceEEEecCCCCCCcc-------CCceEeecceeeeeccC---Cc------ccCCCC
Q 035822 348 VIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQGHVY-------LSREYVQPQWVYDCVNT---RI------ILPTDA 411 (471)
Q Consensus 348 iIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~~~~~-------~~r~YVQPQWVfDcvN~---~~------lLp~~~ 411 (471)
.+|..|=+|..|... ...++|.|.-+..=..++ +-+..|.|.||.||+.. +. ++++++
T Consensus 42 ~Lr~LGI~Iv~d~~~------~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~d 115 (256)
T 3t7k_A 42 ILNQLGIKIFDNIKE------TDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFD 115 (256)
T ss_dssp HHHHTTEEECSSCCG------GGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC-------CCCCCSST
T ss_pred HHHHcCeEEEecCcc------cCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcCCcccccccCChhh
Confidence 456677777665311 146899998877544333 34569999999999977 77 999999
Q ss_pred CCC
Q 035822 412 YMV 414 (471)
Q Consensus 412 Y~p 414 (471)
|..
T Consensus 116 Y~L 118 (256)
T 3t7k_A 116 YEI 118 (256)
T ss_dssp TBC
T ss_pred ccC
Confidence 984
No 52
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.32 E-value=42 Score=25.20 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=37.1
Q ss_pred cccHHHHHHHhcCChhhhhhheeccccccCCCCCccCC-CCceeEecchhhhhhh
Q 035822 19 YITRSQALKQLQVNTKLFRKLCIYKGVFPREPKKKFKG-NHQTYYHLKDVSFIRH 72 (471)
Q Consensus 19 yITR~qAlkkLQlsl~dFRRLCILKGIyPrePk~k~k~-~~ktyY~~KDI~~L~H 72 (471)
.+|..||.+.|+||..-.+|+. -.|. |..-+ -+ +...+|...||.-.+.
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~-~~G~-P~~~~---~g~~~~~~y~~~dv~~wl~ 51 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQ-EQGM-PVLRG---GGKGNEVLYDSAAVIKWYA 51 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHT-TTTC-CCSSC---CCSSSCCEEEHHHHHHHHT
T ss_pred ccCHHHHHHHHCcCHHHHHHHH-HCCC-CeEee---CCCcceEEECHHHHHHHHH
Confidence 5799999999999999999986 4688 64322 22 2488999999955443
No 53
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=29.23 E-value=51 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.4
Q ss_pred hhHHHHhHhcCceeecCCCCCCCCCCCCCceEEEecCCCC
Q 035822 343 ESMLFVIPAFGGTVSWEGEGAPFSETDQSITHQIVDRPTQ 382 (471)
Q Consensus 343 e~LefiIrs~GG~V~wd~~~~~~~e~d~~ITH~IvDRP~~ 382 (471)
+-|---+++.||+|.- |. |.++||+|..||..
T Consensus 33 ~llk~~f~~LGa~I~~------FF--d~~VTiiITrR~~~ 64 (134)
T 3oq4_A 33 DLLKRGFLTLGAQITQ------FF--DTTVTIVITRRSVE 64 (134)
T ss_dssp HHHHHHHHHTTCEEES------SC--CTTCCEEEESSCGG
T ss_pred HHHHHHHHHcCCEEee------ec--CCceEEEEeCCcCc
Confidence 5666778899999984 22 47899999999964
Done!