Query 035823
Match_columns 66
No_of_seqs 103 out of 1475
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 99.7 7.9E-17 1.7E-21 92.6 5.9 63 1-65 434-499 (499)
2 PLN00168 Cytochrome P450; Prov 99.7 1.9E-16 4.2E-21 91.2 6.7 65 1-65 453-517 (519)
3 KOG0157 Cytochrome P450 CYP4/C 99.7 2.1E-16 4.5E-21 90.9 6.7 63 1-65 434-496 (497)
4 PLN02169 fatty acid (omega-1)- 99.7 5.2E-16 1.1E-20 89.3 7.0 62 1-64 438-499 (500)
5 PLN02394 trans-cinnamate 4-mon 99.6 8E-16 1.7E-20 88.2 6.5 65 1-65 436-502 (503)
6 PLN02426 cytochrome P450, fami 99.6 1.7E-15 3.6E-20 87.3 7.4 65 1-65 436-500 (502)
7 PLN00110 flavonoid 3',5'-hydro 99.6 6.5E-16 1.4E-20 88.9 5.5 65 1-65 433-497 (504)
8 PLN03195 fatty acid omega-hydr 99.6 1.3E-15 2.7E-20 87.7 6.6 63 1-65 454-516 (516)
9 PTZ00404 cytochrome P450; Prov 99.6 1.3E-15 2.8E-20 87.0 6.0 63 1-64 420-482 (482)
10 PF00067 p450: Cytochrome P450 99.6 8.5E-16 1.8E-20 85.7 5.1 61 1-61 403-463 (463)
11 PLN02738 carotene beta-ring hy 99.6 2.6E-15 5.7E-20 88.5 7.2 64 1-65 532-595 (633)
12 PLN02655 ent-kaurene oxidase 99.6 3.6E-15 7.9E-20 85.1 7.0 65 1-66 401-465 (466)
13 KOG0159 Cytochrome P450 CYP11/ 99.6 2.7E-15 5.8E-20 86.1 5.7 63 1-65 456-518 (519)
14 PLN02290 cytokinin trans-hydro 99.6 4.4E-15 9.4E-20 85.5 6.6 64 1-66 453-516 (516)
15 PLN02936 epsilon-ring hydroxyl 99.6 8.5E-15 1.8E-19 84.0 6.9 63 1-65 420-482 (489)
16 PLN02971 tryptophan N-hydroxyl 99.6 4.4E-15 9.5E-20 86.1 5.7 63 1-64 470-533 (543)
17 PLN03112 cytochrome P450 famil 99.6 5.4E-15 1.2E-19 85.1 6.0 65 1-65 441-508 (514)
18 PLN03234 cytochrome P450 83B1; 99.6 6.1E-15 1.3E-19 84.6 5.8 64 1-64 432-498 (499)
19 PLN03018 homomethionine N-hydr 99.6 1.1E-14 2.5E-19 84.4 6.8 64 1-65 460-524 (534)
20 PLN02183 ferulate 5-hydroxylas 99.6 6.2E-15 1.3E-19 85.0 5.5 64 1-64 445-511 (516)
21 PLN02687 flavonoid 3'-monooxyg 99.6 9.2E-15 2E-19 84.3 6.1 65 1-65 442-509 (517)
22 PLN02774 brassinosteroid-6-oxi 99.6 1.3E-14 2.9E-19 82.8 5.7 59 1-63 404-462 (463)
23 PLN03141 3-epi-6-deoxocathaste 99.5 1.4E-14 2.9E-19 82.5 5.1 60 1-65 391-450 (452)
24 KOG0684 Cytochrome P450 [Secon 99.5 2.4E-14 5.2E-19 81.3 5.3 64 1-65 422-485 (486)
25 PLN02302 ent-kaurenoic acid ox 99.5 3.5E-14 7.7E-19 81.1 5.7 62 1-65 427-488 (490)
26 PLN02966 cytochrome P450 83A1 99.5 6.4E-14 1.4E-18 80.6 6.8 39 1-39 433-471 (502)
27 PLN02987 Cytochrome P450, fami 99.5 4.4E-14 9.4E-19 81.0 5.3 61 1-65 409-469 (472)
28 PLN02500 cytochrome P450 90B1 99.5 6.3E-14 1.4E-18 80.4 5.8 59 1-63 430-488 (490)
29 KOG0156 Cytochrome P450 CYP2 s 99.5 7.7E-14 1.7E-18 80.5 5.8 62 1-64 426-487 (489)
30 PLN02196 abscisic acid 8'-hydr 99.5 1.3E-13 2.8E-18 78.8 5.2 60 1-63 402-461 (463)
31 COG2124 CypX Cytochrome P450 [ 99.2 1.8E-11 4E-16 69.4 4.6 38 1-38 350-387 (411)
32 PLN02648 allene oxide synthase 99.1 3.9E-10 8.5E-15 65.3 5.5 38 2-39 425-463 (480)
33 KOG3506 40S ribosomal protein 87.8 0.25 5.4E-06 21.0 0.6 10 2-11 13-22 (56)
34 PF12444 Sox_N: Sox developmen 86.5 0.72 1.6E-05 21.4 1.7 21 17-37 59-79 (84)
35 PF09201 SRX: SRX; InterPro: 81.7 1.8 4E-05 22.1 2.1 24 8-31 18-41 (148)
36 PTZ00218 40S ribosomal protein 62.9 3.5 7.6E-05 17.6 0.5 9 3-11 12-20 (54)
37 PHA03162 hypothetical protein; 60.2 16 0.00034 18.6 2.5 24 4-27 2-25 (135)
38 PF14459 Prok-E2_C: Prokaryoti 57.5 4.1 8.8E-05 20.0 0.2 12 1-12 108-119 (131)
39 PF13947 GUB_WAK_bind: Wall-as 49.2 9.8 0.00021 17.9 0.8 10 1-11 15-24 (106)
40 PRK04217 hypothetical protein; 41.5 13 0.00028 18.2 0.6 9 1-9 1-9 (110)
41 PF02663 FmdE: FmdE, Molybdenu 36.3 22 0.00047 17.6 0.9 21 8-28 5-25 (131)
42 PF07963 N_methyl: Prokaryotic 26.1 42 0.00091 11.2 1.7 13 14-26 2-14 (20)
43 COG3697 CitX Phosphoribosyl-de 24.4 1.1E+02 0.0024 16.5 2.3 31 3-33 137-178 (182)
44 KOG4037 Photoreceptor synaptic 23.7 1.2E+02 0.0026 16.5 2.4 23 13-35 159-181 (240)
45 PF09396 Thrombin_light: Throm 22.8 36 0.00079 14.2 0.3 9 3-11 15-23 (49)
46 PRK10224 pyrBI operon leader p 22.0 61 0.0013 12.8 0.9 12 2-13 31-42 (44)
47 PF03947 Ribosomal_L2_C: Ribos 21.7 74 0.0016 16.0 1.4 12 2-13 108-120 (130)
48 KOG4163 Prolyl-tRNA synthetase 20.7 37 0.00081 21.1 0.2 13 5-17 282-294 (551)
49 COG0445 GidA Flavin-dependent 20.1 55 0.0012 21.1 0.8 9 4-12 268-276 (621)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=7.9e-17 Score=92.57 Aligned_cols=63 Identities=25% Similarity=0.428 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccc---eeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERH---EFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|++||++|+++.++.++++|+++..+.+. .. ... ..++.+.+++++++++|+
T Consensus 434 lPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~-~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 434 LPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTI-IP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCccc-Cc-ccCCccceeeecCCceEEEEEeCC
Confidence 6999999999999999999999999999999998877332 22 322 566778888999999874
No 2
>PLN00168 Cytochrome P450; Provisional
Probab=99.68 E-value=1.9e-16 Score=91.19 Aligned_cols=65 Identities=65% Similarity=1.219 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|++||.+|++++++.++++|+++..++...+..........++.++++.+++|+
T Consensus 453 ~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 453 MPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred eCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEecc
Confidence 59999999999999999999999999999999998765433332223445667778999998875
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.68 E-value=2.1e-16 Score=90.94 Aligned_cols=63 Identities=33% Similarity=0.538 Sum_probs=55.7
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||+|+|.|+|+.||.+|++++++.++++|+++...+.. .......+++++.++++.+.+|.
T Consensus 434 ipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~--~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 434 IPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK--PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC--ceeeeEEEEEecCCeEEEEEeCC
Confidence 6999999999999999999999999999999999877643 44556778889999999999885
No 4
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.66 E-value=5.2e-16 Score=89.25 Aligned_cols=62 Identities=26% Similarity=0.510 Sum_probs=51.8
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|++||.+|++++++.++++|+++..++... ......++.+++++++.+++|
T Consensus 438 lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 438 MAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred cCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCc--ccccceEEecCCCEEEEEEeC
Confidence 69999999999999999999999999999999988754332 233445677888999999876
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.64 E-value=8e-16 Score=88.23 Aligned_cols=65 Identities=34% Similarity=0.611 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCC-cCCcccce-eeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGE-VDLSERHE-FTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|+++++|.++++|++.+.++.+ .+.....+ +.+..+.++.+++.+|+
T Consensus 436 ~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 436 LPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence 5999999999999999999999999999999998876542 33332333 44557889999999986
No 6
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.64 E-value=1.7e-15 Score=87.27 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|++++++.++++|+++..++...........++.+++++++.+++|.
T Consensus 436 ~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 436 PVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEcc
Confidence 58999999999999999999999999999999988644321222334456777889999998875
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.63 E-value=6.5e-16 Score=88.90 Aligned_cols=65 Identities=38% Similarity=0.829 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|..|++++++.++++|++++.++...........++.++.++.+.+++|.
T Consensus 433 ~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 433 IPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred eCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccCC
Confidence 59999999999999999999999999999999988765432222234455567789999998773
No 8
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.63 E-value=1.3e-15 Score=87.74 Aligned_cols=63 Identities=30% Similarity=0.419 Sum_probs=50.9
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|++|++++++.++++|++++.++.. .......++.++.++++.+++|+
T Consensus 454 ~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 454 TAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHP--VKYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred eccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCc--ceeeeeeEEecCCCEEEEEEeCC
Confidence 5999999999999999999999999999999998865432 22223344567888999998874
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.62 E-value=1.3e-15 Score=87.00 Aligned_cols=63 Identities=32% Similarity=0.520 Sum_probs=49.5
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|+++|.+|++++++.++++|+++..+++..........+. .+.++++.+++|
T Consensus 420 ~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~R 482 (482)
T PTZ00404 420 MPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTL-KPNKFKVLLEKR 482 (482)
T ss_pred eccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceee-cCCCceeeeecC
Confidence 599999999999999999999999999999999876554322222334444 377888888765
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.62 E-value=8.5e-16 Score=85.65 Aligned_cols=61 Identities=34% Similarity=0.731 Sum_probs=46.4
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEE
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHV 61 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (66)
+|||.|+|.|+|+++|..+++++++.++++|++++.++............+.++.++.+.+
T Consensus 403 ~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 403 LPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp STTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence 5999999999999999999999999999999999976553332222223445777777654
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=99.62 E-value=2.6e-15 Score=88.47 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|..|++++++.++++|++++.++.. +........+.++.++++.+++|.
T Consensus 532 vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~-~~~~~~~~~~~p~~~l~v~l~~R~ 595 (633)
T PLN02738 532 LPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP-PVKMTTGATIHTTEGLKMTVTRRT 595 (633)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC-CcccccceEEeeCCCcEEEEEECC
Confidence 5999999999999999999999999999999999876542 222333456667889999998874
No 12
>PLN02655 ent-kaurene oxidase
Probab=99.61 E-value=3.6e-15 Score=85.07 Aligned_cols=65 Identities=37% Similarity=0.631 Sum_probs=52.9
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecCC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRVR 66 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 66 (66)
+|||.|+|.|+|+.+|..+++++++.++++|++++.++.. +.....+..+.++.++.+.+.+|.+
T Consensus 401 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 401 MAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE-EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc-cccchhheeEeecCCcEEEEeecCC
Confidence 5999999999999999999999999999999999865542 2222344556678899999988753
No 13
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=2.7e-15 Score=86.14 Aligned_cols=63 Identities=29% Similarity=0.536 Sum_probs=54.6
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|+.+.+++++++|+++..... +......+.+.+..++.+++.+|.
T Consensus 456 LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~--pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 456 LPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEE--PVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCC--CccceeEEEEcCCCCcceeeeeCC
Confidence 699999999999999999999999999999999886643 455566777778899999998875
No 14
>PLN02290 cytokinin trans-hydroxylase
Probab=99.60 E-value=4.4e-15 Score=85.48 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecCC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRVR 66 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 66 (66)
+|||.|+|.|+|+.+|.+|++++++.++++|+++..++.. .......+..+.+++++.+++|+.
T Consensus 453 ~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 453 IPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR--HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred ecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc--cCccceeeecCCCCCeEEEEeCCC
Confidence 5999999999999999999999999999999998866532 122234566678889999998863
No 15
>PLN02936 epsilon-ring hydroxylase
Probab=99.59 E-value=8.5e-15 Score=84.04 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=51.8
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.++++++++.++++|+++..++++.. ........++.++++.+++|.
T Consensus 420 ~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 420 IPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIV--MTTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccc--eecceEEeeCCCeEEEEEeee
Confidence 599999999999999999999999999999999987654322 222345557789999998874
No 16
>PLN02971 tryptophan N-hydroxylase
Probab=99.58 E-value=4.4e-15 Score=86.10 Aligned_cols=63 Identities=25% Similarity=0.434 Sum_probs=50.1
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCC-CcCCcccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGG-EVDLSERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|+++|..|++++++.++++|+++..+++ ........+ .+..++++.+.+++|
T Consensus 470 ~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 470 ISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence 699999999999999999999999999999999887543 333333334 444666888888776
No 17
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.58 E-value=5.4e-15 Score=85.06 Aligned_cols=65 Identities=35% Similarity=0.709 Sum_probs=50.9
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCC---cCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGE---VDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|++++++.++++|+++..++.. ............+++++++.+.+|.
T Consensus 441 ~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 508 (514)
T PLN03112 441 LPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRL 508 (514)
T ss_pred eCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCC
Confidence 5999999999999999999999999999999998764421 1122223344456779999999884
No 18
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.58 E-value=6.1e-15 Score=84.58 Aligned_cols=64 Identities=28% Similarity=0.564 Sum_probs=48.1
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCC-C--cCCcccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGG-E--VDLSERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|+++|.+|++++++.++++|++++.++. . .......+....++..+.+..++|
T Consensus 432 ~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 432 LPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 599999999999999999999999999999999887652 1 122223344445666666666554
No 19
>PLN03018 homomethionine N-hydroxylase
Probab=99.57 E-value=1.1e-14 Score=84.42 Aligned_cols=64 Identities=28% Similarity=0.557 Sum_probs=50.0
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCC-CcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGG-EVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|++++++.++++|+++..++. ..+...... .+..+.++++.+++|.
T Consensus 460 lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~p~~~~v~~~~R~ 524 (534)
T PLN03018 460 VSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDA-SLLMAKPLLLSVEPRL 524 (534)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcccccc-ceecCCCeEEEEEecc
Confidence 599999999999999999999999999999999876543 222222223 3335779999998873
No 20
>PLN02183 ferulate 5-hydroxylase
Probab=99.57 E-value=6.2e-15 Score=84.99 Aligned_cols=64 Identities=36% Similarity=0.682 Sum_probs=47.1
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcC-Cc--ccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVD-LS--ERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|+++|.+|+++++|.++++|+++..++...+ .. ...+.....+.++.+.+++|
T Consensus 445 lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 445 IPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 599999999999999999999999999999999886654211 21 12233333455666666655
No 21
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.57 E-value=9.2e-15 Score=84.29 Aligned_cols=65 Identities=37% Similarity=0.724 Sum_probs=48.2
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCc-CCc--ccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEV-DLS--ERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|++++++.++++|++++.++... ... ........+..++++.+++|.
T Consensus 442 ~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 442 IPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 58999999999999999999999999999999988755321 121 122333334457777777663
No 22
>PLN02774 brassinosteroid-6-oxidase
Probab=99.55 E-value=1.3e-14 Score=82.75 Aligned_cols=59 Identities=29% Similarity=0.608 Sum_probs=47.0
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEe
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCP 63 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (66)
+|||+|+|.|+|+++|.+|++++++.++++|++++.+++.... .. .+.+++++++++++
T Consensus 404 lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~~~---~~-~~~p~~g~~~~~~~ 462 (463)
T PLN02774 404 FLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKLMK---FP-RVEAPNGLHIRVSP 462 (463)
T ss_pred cCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcccc---CC-CCCCCCCceEEeee
Confidence 5999999999999999999999999999999999876543111 11 23367888888764
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.54 E-value=1.4e-14 Score=82.46 Aligned_cols=60 Identities=38% Similarity=0.587 Sum_probs=49.4
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|.+|++++++.++++|++...++... ...++.+..++.+.+++|+
T Consensus 391 ~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 391 TPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTIV-----NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCee-----ecccccCCCCceEEEEeCC
Confidence 69999999999999999999999999999999987654321 1124567788999998885
No 24
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=2.4e-14 Score=81.34 Aligned_cols=64 Identities=27% Similarity=0.532 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
||||+|++.|+|+.||.+|++.++..+++.||+++.++.-.+.... .+...+.++++++.+.|.
T Consensus 422 mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s-~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 422 MPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYS-RMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred cccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHH-HhhcCCCCCceEEEeecC
Confidence 6999999999999999999999999999999999998743233222 235557889988888764
No 25
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.52 E-value=3.5e-14 Score=81.13 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=49.3
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|..|++++++.++++|++++.++.. ... ......+..++.+.+++|.
T Consensus 427 ~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~--~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 427 LPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC-KVM--YLPHPRPKDNCLARITKVA 488 (490)
T ss_pred cCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC-cce--eCCCCCCCCCceEEEEecc
Confidence 5999999999999999999999999999999999875432 111 1112557778889888775
No 26
>PLN02966 cytochrome P450 83A1
Probab=99.52 E-value=6.4e-14 Score=80.59 Aligned_cols=39 Identities=46% Similarity=0.832 Sum_probs=36.4
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGG 39 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~ 39 (66)
+|||.|+|.|+|++||.+|++++++.++++|+++..++.
T Consensus 433 ~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 433 IPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM 471 (502)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence 699999999999999999999999999999999887654
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.51 E-value=4.4e-14 Score=81.04 Aligned_cols=61 Identities=30% Similarity=0.507 Sum_probs=49.9
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEecC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPRV 65 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (66)
+|||.|+|.|+|+++|..|++++++.++++|+++..++.. . ....++.+..++++.+++|+
T Consensus 409 l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~--~--~~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 409 TPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK--L--VFFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred ECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCc--e--eecccccCCCCceEEEEecc
Confidence 5899999999999999999999999999999998865442 1 11235567778999998874
No 28
>PLN02500 cytochrome P450 90B1
Probab=99.50 E-value=6.3e-14 Score=80.40 Aligned_cols=59 Identities=32% Similarity=0.651 Sum_probs=46.1
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEe
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCP 63 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (66)
+|||.|+|.|+|+++|.+|++++++.++++|+++..+++.. . .... ...+.++++.+.+
T Consensus 430 lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~-~--~~~~-~~~~~~l~~~~~~ 488 (490)
T PLN02500 430 MPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQA-F--AFPF-VDFPKGLPIRVRR 488 (490)
T ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCcc-e--eccc-ccCCCCceEEEEe
Confidence 59999999999999999999999999999999988765431 1 1112 2345688887764
No 29
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=7.7e-14 Score=80.48 Aligned_cols=62 Identities=52% Similarity=0.911 Sum_probs=50.2
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEec
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCPR 64 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 64 (66)
+|||.|+|.|+|..+|++++.+++++++++|+|...++ ..+.+... .....+.++.+...+|
T Consensus 426 iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-~~d~~e~~-~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 426 IPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-KVDMEEAG-LTLKKKKPLKAVPVPR 487 (489)
T ss_pred cCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-CCCCcccc-cceecCCcceeeeecC
Confidence 69999999999999999999999999999999998876 43444443 5555667777766655
No 30
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.47 E-value=1.3e-13 Score=78.81 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=46.9
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCCCCcCCcccceeeeeeeCCeeEEEEe
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDGGEVDLSERHEFTVVMKNPLKAHVCP 63 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (66)
+|||.|+|.|+|+++|..+++++++.++++|+++..+++. +. ....+..++.++++.++.
T Consensus 402 lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~--~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 402 MPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN-GI--QYGPFALPQNGLPIALSR 461 (463)
T ss_pred cCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC-ce--EEcccccCCCCceEEEec
Confidence 6999999999999999999999999999999998865432 22 222234477787777764
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=1.8e-11 Score=69.45 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=35.2
Q ss_pred CCCCCcccCCCCChhhHHHHHHHHHHHhhhceeeecCC
Q 035823 1 MPFGVGRRICPGLGLPMLHLEYFIANLIWCFEWKAVDG 38 (66)
Q Consensus 1 ~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~ 38 (66)
+|||+|.|.|+|..||++|++++++.+++.|++....+
T Consensus 350 l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 350 LPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence 69999999999999999999999999999999876554
No 32
>PLN02648 allene oxide synthase
Probab=99.08 E-value=3.9e-10 Score=65.27 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=33.9
Q ss_pred CCCCcccCCCCChhhHHHHHHHHHHHhhhce-eeecCCC
Q 035823 2 PFGVGRRICPGLGLPMLHLEYFIANLIWCFE-WKAVDGG 39 (66)
Q Consensus 2 pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~-~~~~~~~ 39 (66)
+||+|+|.|+|+.||..|++++++.++++|+ |++.++.
T Consensus 425 ~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 425 SPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred CCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 3578889999999999999999999999998 8886654
No 33
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=87.83 E-value=0.25 Score=21.03 Aligned_cols=10 Identities=50% Similarity=1.046 Sum_probs=8.5
Q ss_pred CCCCcccCCC
Q 035823 2 PFGVGRRICP 11 (66)
Q Consensus 2 pFg~G~r~C~ 11 (66)
+||.|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999984
No 34
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=86.45 E-value=0.72 Score=21.44 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhceeeecC
Q 035823 17 MLHLEYFIANLIWCFEWKAVD 37 (66)
Q Consensus 17 ~~~~~~~~~~l~~~f~~~~~~ 37 (66)
...|+-++.++|+.|||.+++
T Consensus 59 p~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 59 PVCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred cHHHHHHHHHHhccCCceeee
Confidence 357888999999999999864
No 35
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=81.68 E-value=1.8 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.6
Q ss_pred cCCCCChhhHHHHHHHHHHHhhhc
Q 035823 8 RICPGLGLPMLHLEYFIANLIWCF 31 (66)
Q Consensus 8 r~C~G~~~a~~~~~~~~~~l~~~f 31 (66)
-.|.|+.|+..++..+++.++..-
T Consensus 18 yN~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS-
T ss_pred ecccchHHHHHHHHHHHHHHhcCC
Confidence 369999999999999999988754
No 36
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=62.89 E-value=3.5 Score=17.58 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=7.6
Q ss_pred CCCcccCCC
Q 035823 3 FGVGRRICP 11 (66)
Q Consensus 3 Fg~G~r~C~ 11 (66)
||-|.|.|.
T Consensus 12 yGkGsr~C~ 20 (54)
T PTZ00218 12 YGKGSRQCR 20 (54)
T ss_pred CCCCCCeee
Confidence 788999985
No 37
>PHA03162 hypothetical protein; Provisional
Probab=60.20 E-value=16 Score=18.57 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=19.2
Q ss_pred CCcccCCCCChhhHHHHHHHHHHH
Q 035823 4 GVGRRICPGLGLPMLHLEYFIANL 27 (66)
Q Consensus 4 g~G~r~C~G~~~a~~~~~~~~~~l 27 (66)
+.|.+.||+.....-++..=++.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999998888877766664
No 38
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=57.47 E-value=4.1 Score=20.03 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.7
Q ss_pred CCCCCcccCCCC
Q 035823 1 MPFGVGRRICPG 12 (66)
Q Consensus 1 ~pFg~G~r~C~G 12 (66)
+|||.|.-.|++
T Consensus 108 ~p~GaGaAaC~a 119 (131)
T PF14459_consen 108 NPFGAGAAACFA 119 (131)
T ss_pred CCcCccHHHHHH
Confidence 588888888876
No 39
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=49.23 E-value=9.8 Score=17.88 Aligned_cols=10 Identities=50% Similarity=1.172 Sum_probs=7.3
Q ss_pred CCCCCcccCCC
Q 035823 1 MPFGVGRRICP 11 (66)
Q Consensus 1 ~pFg~G~r~C~ 11 (66)
.|||.|. .|-
T Consensus 15 YPFgi~~-~C~ 24 (106)
T PF13947_consen 15 YPFGIGP-GCG 24 (106)
T ss_pred CCCccCC-CCC
Confidence 4899887 564
No 40
>PRK04217 hypothetical protein; Provisional
Probab=41.50 E-value=13 Score=18.17 Aligned_cols=9 Identities=67% Similarity=1.139 Sum_probs=5.7
Q ss_pred CCCCCcccC
Q 035823 1 MPFGVGRRI 9 (66)
Q Consensus 1 ~pFg~G~r~ 9 (66)
+|||+|...
T Consensus 1 ~~~~~~~~~ 9 (110)
T PRK04217 1 MPFGWGRGR 9 (110)
T ss_pred CCcccccCC
Confidence 577776543
No 41
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=36.34 E-value=22 Score=17.58 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=14.4
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 035823 8 RICPGLGLPMLHLEYFIANLI 28 (66)
Q Consensus 8 r~C~G~~~a~~~~~~~~~~l~ 28 (66)
|.|+|..++......++..+-
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcC
Confidence 789998888877777766653
No 42
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=26.09 E-value=42 Score=11.16 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHH
Q 035823 14 GLPMLHLEYFIAN 26 (66)
Q Consensus 14 ~~a~~~~~~~~~~ 26 (66)
.|...|+-+.++-
T Consensus 2 GFTLiE~~v~l~i 14 (20)
T PF07963_consen 2 GFTLIELLVALAI 14 (20)
T ss_pred ceeHHHHHHHHHH
Confidence 3566677666654
No 43
>COG3697 CitX Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) [Coenzyme metabolism / Lipid metabolism]
Probab=24.45 E-value=1.1e+02 Score=16.51 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCCcccCCC-----------CChhhHHHHHHHHHHHhhhcee
Q 035823 3 FGVGRRICP-----------GLGLPMLHLEYFIANLIWCFEW 33 (66)
Q Consensus 3 Fg~G~r~C~-----------G~~~a~~~~~~~~~~l~~~f~~ 33 (66)
||.-+|.|. |+.-+..++..-+..++..++.
T Consensus 137 ~~lp~R~CLiC~q~A~~CaR~rkHsveell~kIe~ll~d~~~ 178 (182)
T COG3697 137 FGLPPRRCLICEQSAKVCARGRKHSVEELLNKIEALLHDYDA 178 (182)
T ss_pred cCCCCceeEeehhhHHHHhccccccHHHHHHHHHHHHhhhhh
Confidence 677778775 6666677777777777776654
No 44
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=23.65 E-value=1.2e+02 Score=16.52 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHHHhhhceeee
Q 035823 13 LGLPMLHLEYFIANLIWCFEWKA 35 (66)
Q Consensus 13 ~~~a~~~~~~~~~~l~~~f~~~~ 35 (66)
.+|.+.|-..+-.+|++.||++.
T Consensus 159 nnFRMIERHfFrdrLLK~FDFeF 181 (240)
T KOG4037|consen 159 NNFRMIERHFFRDRLLKSFDFEF 181 (240)
T ss_pred chhhHHHHHHHHHHHHhhcccee
Confidence 45777777778889999999875
No 45
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=22.84 E-value=36 Score=14.15 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=6.4
Q ss_pred CCCcccCCC
Q 035823 3 FGVGRRICP 11 (66)
Q Consensus 3 Fg~G~r~C~ 11 (66)
||.|.-.|-
T Consensus 15 FG~GEadCG 23 (49)
T PF09396_consen 15 FGSGEADCG 23 (49)
T ss_dssp HTSSGTTTT
T ss_pred ccCcccccC
Confidence 777777773
No 46
>PRK10224 pyrBI operon leader peptide; Provisional
Probab=22.01 E-value=61 Score=12.82 Aligned_cols=12 Identities=42% Similarity=1.090 Sum_probs=7.6
Q ss_pred CCCCcccCCCCC
Q 035823 2 PFGVGRRICPGL 13 (66)
Q Consensus 2 pFg~G~r~C~G~ 13 (66)
|..-|.-.|+|.
T Consensus 31 pl~~g~ffcpgv 42 (44)
T PRK10224 31 PLNRGAFFCPGV 42 (44)
T ss_pred cccccccccCcc
Confidence 345566778874
No 47
>PF03947 Ribosomal_L2_C: Ribosomal Proteins L2, C-terminal domain; InterPro: IPR022669 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L2 is one of the proteins from the large ribosomal subunit. This entry represents the best conserved region located in the C-terminal section of these proteins.In Escherichia coli, L2 is known to bind to the 23S rRNA and to have peptidyltransferase activity. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L2. Algal and plant chloroplast L2. Cyanelle L2. Archaebacterial L2. Plant L2. Slime mold L2. Marchantia polymorpha mitochondrial L2. Paramecium tetraurelia mitochondrial L2. Fission yeast K5, K37 and KD4. Yeast YL6. Vertebrate L8. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3MRZ_C 3F1H_D 3PYO_C 3F1F_D 3PYV_C 3PYR_C 1VSA_B 3D5B_D 3PYT_C 3MS1_C ....
Probab=21.69 E-value=74 Score=16.04 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.7
Q ss_pred CCCCcc-cCCCCC
Q 035823 2 PFGVGR-RICPGL 13 (66)
Q Consensus 2 pFg~G~-r~C~G~ 13 (66)
|+|+|. |.-.|+
T Consensus 108 PhGGG~g~~~~gr 120 (130)
T PF03947_consen 108 PHGGGEGKTSGGR 120 (130)
T ss_dssp STCTSSSSSSTSS
T ss_pred cCCCCCCcCCCCC
Confidence 677777 555554
No 48
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=37 Score=21.09 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=9.7
Q ss_pred CcccCCCCChhhH
Q 035823 5 VGRRICPGLGLPM 17 (66)
Q Consensus 5 ~G~r~C~G~~~a~ 17 (66)
++..+|.|++|++
T Consensus 282 gaTSH~LGQNFSk 294 (551)
T KOG4163|consen 282 GATSHHLGQNFSK 294 (551)
T ss_pred ccchhhhhHHHHH
Confidence 4556789998876
No 49
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.14 E-value=55 Score=21.06 Aligned_cols=9 Identities=67% Similarity=1.449 Sum_probs=7.3
Q ss_pred CCcccCCCC
Q 035823 4 GVGRRICPG 12 (66)
Q Consensus 4 g~G~r~C~G 12 (66)
|.|+|-||.
T Consensus 268 g~GPRYCPS 276 (621)
T COG0445 268 GVGPRYCPS 276 (621)
T ss_pred ccCCCCCCC
Confidence 569999985
Done!