BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035824
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
           Cysteine Synthase B
 pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
           Cysteine Synthase B
          Length = 323

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 25  EAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLH 69
           E YDPEILT   R+ +   D  ++    V   GIF G+     LH
Sbjct: 229 ELYDPEILT--ARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLH 271


>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
           Tuberculosis An O-Phosphoserine Dependent Cysteine
           Synthase
 pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
           Tuberculosis An O-Phosphoserine Dependent Cysteine
           Synthase
 pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
           Tuberculosis - Open And Closed Conformations
 pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
           Tuberculosis - Open And Closed Conformations
          Length = 326

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 25  EAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLH 69
           E YDPEILT   R+ +   D  ++    V   GIF G+     LH
Sbjct: 232 ELYDPEILT--ARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLH 274


>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
           Found In The Cysteine Biosynthetic Pathway Of
           Mycobacterium Tuberculosis
 pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
           Found In The Cysteine Biosynthetic Pathway Of
           Mycobacterium Tuberculosis
          Length = 325

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 25  EAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLH 69
           E YDPEILT   R+ +   D  ++    V   GIF G+     LH
Sbjct: 231 ELYDPEILT--ARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLH 273


>pdb|3D8M|A Chain A, Crystal Structure Of A Chimeric Receptor Binding Protein
           From Lactococcal Phages Subspecies Tp901-1 And P2
          Length = 165

 Score = 29.3 bits (64), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 30  EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
           + LT E  + L+    KK N + + R   F G V N+   W    T   V +P  P  + 
Sbjct: 65  QTLTVEAGNGLQLQLTKKNNDLVIVR---FFGSVSNIQKGWNMSGTW--VDRPFRPAAVQ 119

Query: 90  EYAEVLAQLSKGIVIDINPSNTIIFY 115
                 A       IDINP+ +I ++
Sbjct: 120 SLVGHFAGRDTSFHIDINPNGSITWW 145


>pdb|2WZP|A Chain A, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
 pdb|2WZP|B Chain B, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
 pdb|2WZP|C Chain C, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
 pdb|2WZP|G Chain G, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
 pdb|2WZP|H Chain H, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
 pdb|2WZP|I Chain I, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
           A Novel Mechanism Of Host Attachment And Activation In
           Siphoviridae
          Length = 266

 Score = 29.3 bits (64), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 30  EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
           + LT E  + L+    KK N + + R   F G V N+   W    T   V +P  P  + 
Sbjct: 163 QTLTVEAGNGLQLQLTKKNNDLVIVR---FFGSVSNIQKGWNMSGTW--VDRPFRPAAVQ 217

Query: 90  EYAEVLAQLSKGIVIDINPSNTIIFY 115
                 A       IDINP+ +I ++
Sbjct: 218 SLVGHFAGRDTSFHIDINPNGSITWW 243


>pdb|3DA0|A Chain A, Crystal Structure Of A Cleaved Form Of A Chimeric Receptor
           Binding Protein From Lactococcal Phages Subspecies
           Tp901-1 And P2
 pdb|3DA0|B Chain B, Crystal Structure Of A Cleaved Form Of A Chimeric Receptor
           Binding Protein From Lactococcal Phages Subspecies
           Tp901-1 And P2
 pdb|3DA0|C Chain C, Crystal Structure Of A Cleaved Form Of A Chimeric Receptor
           Binding Protein From Lactococcal Phages Subspecies
           Tp901-1 And P2
          Length = 136

 Score = 29.3 bits (64), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 30  EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
           + LT E  + L+    KK N + + R   F G V N+   W    T   V +P  P  + 
Sbjct: 33  QTLTVEAGNGLQLQLTKKNNDLVIVR---FFGSVSNIQKGWNMSGTW--VDRPFRPAAVQ 87

Query: 90  EYAEVLAQLSKGIVIDINPSNTIIFY 115
                 A       IDINP+ +I ++
Sbjct: 88  SLVGHFAGRDTSFHIDINPNGSITWW 113


>pdb|2X53|A Chain A, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|B Chain B, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|C Chain C, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|D Chain D, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|E Chain E, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|F Chain F, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|G Chain G, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|H Chain H, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|I Chain I, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|J Chain J, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|K Chain K, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|L Chain L, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|M Chain M, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|N Chain N, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|O Chain O, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|P Chain P, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|Q Chain Q, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X53|R Chain R, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Sr
 pdb|2X54|A Chain A, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|B Chain B, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|C Chain C, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|D Chain D, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|E Chain E, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|F Chain F, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|G Chain G, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|H Chain H, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|I Chain I, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|J Chain J, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|K Chain K, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|L Chain L, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|M Chain M, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|N Chain N, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|O Chain O, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|P Chain P, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|Q Chain Q, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X54|R Chain R, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 1 Of 2)
 pdb|2X5A|A Chain A, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|B Chain B, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|C Chain C, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|D Chain D, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|E Chain E, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|F Chain F, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|G Chain G, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|H Chain H, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|I Chain I, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|J Chain J, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|K Chain K, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|L Chain L, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|M Chain M, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|N Chain N, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|O Chain O, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|P Chain P, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|Q Chain Q, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
 pdb|2X5A|R Chain R, Structure Of The Phage P2 Baseplate In Its Activated
           Conformation With Ca (Part 2 Of 2)
          Length = 263

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 30  EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
           + LT E  + L+    KK N + + R   F G V N+   W    T   V +P  P  + 
Sbjct: 163 QTLTVEAGNGLQLQLTKKNNDLVIVR---FFGSVSNIQKGWNMSGTW--VDRPFRPAAVQ 217

Query: 90  EYAEVLAQLSKGIVIDINPSNTIIFY 115
                 A       IDINP+ +I ++
Sbjct: 218 SLVGHFAGRDTSFHIDINPNGSITWW 243


>pdb|2BSD|A Chain A, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein
 pdb|2BSD|B Chain B, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein
 pdb|2BSD|C Chain C, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein
 pdb|2BSE|A Chain A, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein In Complex With A Llama Vhh Domain
 pdb|2BSE|B Chain B, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein In Complex With A Llama Vhh Domain
 pdb|2BSE|C Chain C, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
           Protein In Complex With A Llama Vhh Domain
 pdb|1ZRU|A Chain A, Structure Of The Lactophage P2 Receptor Binding Protein In
           Complex With Glycerol
 pdb|1ZRU|B Chain B, Structure Of The Lactophage P2 Receptor Binding Protein In
           Complex With Glycerol
 pdb|1ZRU|C Chain C, Structure Of The Lactophage P2 Receptor Binding Protein In
           Complex With Glycerol
          Length = 264

 Score = 28.9 bits (63), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 30  EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
           + LT E  + L+    KK N + + R   F G V N+   W    T   V +P  P  + 
Sbjct: 164 QTLTVEAGNGLQLQLTKKNNDLVIVR---FFGSVSNIQKGWNMSGTW--VDRPFRPAAVQ 218

Query: 90  EYAEVLAQLSKGIVIDINPSNTIIFY 115
                 A       IDINP+ +I ++
Sbjct: 219 SLVGHFAGRDTSFHIDINPNGSITWW 244


>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
 pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
 pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
           Protein Rodz
 pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
           Protein Rodz
          Length = 344

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 97  QLSKGIVIDINPSNTIIFYRGKNYV 121
            L K I ID+  +NT++F RGK  V
Sbjct: 1   MLRKDIGIDLGTANTLVFLRGKGIV 25


>pdb|2EWR|A Chain A, Crystal Structure Of A Putative Nucleotidyltransferase
          (Tm1012) From Thermotoga Maritima At 1.60 A Resolution
          Length = 170

 Score = 28.5 bits (62), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 9  WLIENLTKFELPKAPTEAYDPEILTDEERHY 39
          W++     F L   P E +D +I TDEE  Y
Sbjct: 36 WVVTGSLSFALQGVPVEVHDIDIQTDEEGAY 66


>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
          Length = 344

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 97  QLSKGIVIDINPSNTIIFYRGKNYV 121
            L K I ID+  +NT++F RGK  V
Sbjct: 1   MLRKDIGIDLGTANTLVFLRGKGIV 25


>pdb|2FCL|A Chain A, Crystal Structure Of A Putative Nucleotidyltransferase
          (Tm1012) From Thermotoga Maritima At 1.35 A Resolution
          Length = 169

 Score = 28.5 bits (62), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 9  WLIENLTKFELPKAPTEAYDPEILTDEERHY 39
          W++     F L   P E +D +I TDEE  Y
Sbjct: 36 WVVTGSLSFALQGVPVEVHDIDIQTDEEGAY 66


>pdb|3L1N|A Chain A, Crystal Structure Of Mp1p Ligand Binding Domain 2 Complexd
           W Palmitic Acid
          Length = 194

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 45  EKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVI 104
           +KK+  VQ G    FGG V N +L  ++ E  + +S+       HE A++  QLS GI  
Sbjct: 132 DKKEPLVQAG----FGGKVEN-NLR-QQEEAAQKLSELVSTKVPHELADISRQLSDGIAA 185

Query: 105 DI 106
            I
Sbjct: 186 GI 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,999,949
Number of Sequences: 62578
Number of extensions: 156581
Number of successful extensions: 367
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 17
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)