BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035824
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 84/120 (70%)
Query: 2 KEKRKEAWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGG 61
K ++KE L+E + K E ++ +DPEILT EE Y + K KNYV VGRRGI+ G
Sbjct: 147 KARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQG 206
Query: 62 VVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNTIIFYRGKNYV 121
V+LNMHLHWKKH+T++VV K P ++ E A LA+L+ GIV+D++ NTII YRGKNYV
Sbjct: 207 VILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV 266
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 12 ENLTKFELPKAPTE-AYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHW 70
+ L K +P+E + D E LT+EE+ +R K V +GRRGIF GV+ +H HW
Sbjct: 543 QALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHW 602
Query: 71 KKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDI---NPSNTIIFYRGKNY 120
K E VKV++K + +I A +L + GI+I + S+ II YRGKNY
Sbjct: 603 KHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 32 LTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSK-PCEPWKIHE 90
L DEE YL++ + +GR G+ + W+K K+ K + +
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 91 YAEVLAQLSKGIVIDINPSNTIIFYRGKNYV 121
A L L+ G VI N + II YRGK+++
Sbjct: 412 MAWNLKHLTGGTVILRN-KDFIILYRGKDFL 441
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 28 DPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWK 87
D E+LT+EER ++ K +V +GRRG+F GV+ +H HWK E VKV++K + +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621
Query: 88 IHEYAEVLAQLSKGIVIDI---NPSNTIIFYRGKNY 120
I + +L + G +I I S+ II YRGKNY
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 32 LTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHE- 90
L DEE YL++ + +GR G+ + W+K KV K HE
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 91 YAEVLAQLSKGIVIDINPSNTIIFYRGKNYV 121
A L +L+ G VI N + II YRGK+++
Sbjct: 414 MARNLKRLTGGTVILRN-KDYIIIYRGKDFL 443
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 23 PTEAYDP-EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSK 81
P+E D EILT+EER L+R K + + +GRRG+F GV+ +H HWK E KV++
Sbjct: 562 PSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITM 621
Query: 82 PCEPWKIHEYAEVLAQLSKGIVIDIN---PSNTIIFYRGKNY 120
++ A+ L S G++I I + I+ YRGKNY
Sbjct: 622 QKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 663
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 32 LTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKI--- 88
LTDEE YL+ + + +GR G+ + W+K +++K W
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKC----IIAKIAIKWGALNT 416
Query: 89 --HEYAEVLAQLSKGIVIDINPSNTIIFYRGKNYV 121
E A+ L L+ G++I + I+ YRGK+++
Sbjct: 417 NNEEMADELRYLTGGVLI-LRNKYLIVLYRGKDFL 450
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
E LT EE L + K K + +GR G+ ++ N+H HWK+ K+ K +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
+ L + G VI + I +RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
E LT EE L + K K + +GR G+ ++ N+H HWK+ K+ K +
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
L + G VI I +RG+NY
Sbjct: 243 NICHQLEEKVGGKVIH-RQGGVIFLFRGRNY 272
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 30 EILTDEERHYL--KRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWK 87
E LT ER +L K + K + +GR G+ ++ ++H HWK E V+V
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 88 IHEYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
+ L + G++I + +I YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 32 LTDEERHYLKRTDE--KKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
LT+ ER +L + K K V +GR G+ ++ +++ HWK E V+V +
Sbjct: 159 LTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMK 218
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
L + G V+ + S T++ YRG+NY
Sbjct: 219 NVIFHLEDKTFGQVVSKH-SGTLVLYRGRNY 248
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 51 VQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSN 110
+ +G+ G+ ++ ++H HWKK E V++ + L + S G ++ N N
Sbjct: 164 INLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRN-IN 222
Query: 111 TIIFYRGKNY 120
++ YRG+NY
Sbjct: 223 ILVLYRGRNY 232
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
E LT E L + + +GR G+ ++ +H HW++ E KV + +
Sbjct: 228 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 287
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
L + S G VI + YRG+NY
Sbjct: 288 NLCYHLEEKSGGKVIH-RVGGVVFLYRGRNY 317
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 51 VQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSN 110
+ +G+ G+ ++ ++H HWK+ E V++ + L + G VI N N
Sbjct: 166 INLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRN-IN 224
Query: 111 TIIFYRGKNY 120
+I YRG+NY
Sbjct: 225 ILILYRGRNY 234
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
E LT E L + + +GR G+ ++ +H HW++ E KV + +
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
L + S G VI + YRG++Y
Sbjct: 292 NLCYHLEEKSGGKVIH-RVGGVVFLYRGRHY 321
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 51 VQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSN 110
V +GR G ++ +H HWK+ KV K ++ VL + + G +I
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIH-RVGG 280
Query: 111 TIIFYRGKNY 120
+ +RG+NY
Sbjct: 281 VVYLFRGRNY 290
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIH 89
E LT EE L + K + +GR G+ ++ N+H WK+ K+ K +
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 90 EYAEVLAQLSKGIVIDINPSNTIIFYRGKNY 120
E L + G VI + +RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
>sp|P63873|CYSM_MYCTU O-phosphoserine sulfhydrylase OS=Mycobacterium tuberculosis GN=cysM
PE=1 SV=1
Length = 323
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 25 EAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLH 69
E YDPEILT R+ + D ++ V GIF G+ LH
Sbjct: 229 ELYDPEILT--ARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLH 271
>sp|P63874|CYSM_MYCBO O-phosphoserine sulfhydrylase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=cysM PE=3 SV=1
Length = 323
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 25 EAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLH 69
E YDPEILT R+ + D ++ V GIF G+ LH
Sbjct: 229 ELYDPEILT--ARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLH 271
>sp|Q5KWN3|Y2618_GEOKA UPF0758 protein GK2618 OS=Geobacillus kaustophilus (strain
HTA426) GN=GK2618 PE=3 SV=1
Length = 226
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 8 AWLIENLTKFELPKAPTEAYDPEILTDEER-HYLKRTDEKKKNYVQVGRR 56
AW+I ++ K P+ + PE L+D E L RT K+++ VQ+ +R
Sbjct: 2 AWMIRDVPKDSRPRERLLSSGPESLSDHELIAILLRTGTKEESVVQLAQR 51
>sp|P28976|L_TSWV1 RNA-directed RNA polymerase L OS=Tomato spotted wilt virus (strain
Brazilian Br-01) GN=L PE=3 SV=1
Length = 2875
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 74 ETVKVVSKPCEPWKIHEYAEVLAQLSKGIVI 104
ET K ++K C I+ Y+E + Q SKG+++
Sbjct: 713 ETCKKINKLCNDLAIYHYSEDMMQFSKGLMV 743
>sp|Q54JE7|U522B_DICDI UPF0522 protein B OS=Dictyostelium discoideum GN=DDB_G0288097 PE=3
SV=1
Length = 517
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 50 YVQVGRRGIF--GGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDI- 106
Y Q+G G+F G + +L W+ VK V K CE I Y +S G +D+
Sbjct: 88 YAQLGP-GVFQMGWDTITFNLQWEYEICVKKVVKLCESGTITVYTASGQSVSLGTTLDVL 146
Query: 107 -NPSNTII 113
N SN I
Sbjct: 147 FNSSNAKI 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,575,235
Number of Sequences: 539616
Number of extensions: 1947006
Number of successful extensions: 4633
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4607
Number of HSP's gapped (non-prelim): 39
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)