Query 035824
Match_columns 121
No_of_seqs 120 out of 632
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 1E-36 3.5E-41 214.1 12.8 87 31-118 1-87 (104)
2 1jo0_A Hypothetical protein HI 100.0 1.5E-36 5.2E-41 211.1 12.3 87 31-118 2-88 (98)
3 3ka5_A Ribosome-associated pro 83.0 3.7 0.00013 25.8 5.6 47 74-121 1-50 (65)
4 3k2t_A LMO2511 protein; lister 78.0 3.3 0.00011 25.3 4.0 46 75-121 2-50 (57)
5 3lyv_A Ribosome-associated fac 73.1 4.3 0.00015 25.6 3.7 46 75-121 3-51 (66)
6 3p04_A Uncharacterized BCR; SE 68.1 22 0.00076 23.2 7.6 55 64-120 19-76 (87)
7 2vhw_A Alanine dehydrogenase; 60.7 19 0.00066 28.5 6.1 64 19-85 5-79 (377)
8 3sbx_A Putative uncharacterize 60.7 12 0.00042 27.6 4.6 32 40-71 131-162 (189)
9 2dk5_A DNA-directed RNA polyme 57.0 27 0.00092 22.5 5.4 61 22-82 8-73 (91)
10 2qgq_A Protein TM_1862; alpha- 53.9 63 0.0022 24.5 7.9 60 6-66 72-132 (304)
11 3qua_A Putative uncharacterize 45.5 21 0.00073 26.4 3.8 31 40-70 140-170 (199)
12 3n70_A Transport activator; si 43.6 68 0.0023 21.1 6.3 65 37-104 14-81 (145)
13 2a33_A Hypothetical protein; s 43.2 25 0.00086 26.2 3.9 32 40-71 132-163 (215)
14 1ydh_A AT5G11950; structural g 43.1 23 0.0008 26.5 3.7 54 40-97 128-186 (216)
15 3upu_A ATP-dependent DNA helic 42.3 1.1E+02 0.0036 24.5 7.8 68 17-84 10-83 (459)
16 3sim_A Protein, family 18 chit 42.2 70 0.0024 24.1 6.4 70 30-99 59-148 (275)
17 1t35_A Hypothetical protein YV 40.6 14 0.00048 26.9 2.1 52 42-97 122-178 (191)
18 2jz2_A SSL0352 protein; SH3-li 39.1 23 0.00078 22.3 2.6 18 103-120 23-41 (66)
19 2h9u_A DNA/RNA-binding protein 38.9 84 0.0029 20.9 7.1 60 48-107 6-67 (102)
20 2f1f_A Acetolactate synthase i 34.1 72 0.0025 22.8 5.0 69 34-114 55-123 (164)
21 2eo2_A Adult MALE hypothalamus 33.6 38 0.0013 21.6 3.0 28 12-44 35-62 (71)
22 2pc6_A Probable acetolactate s 31.4 91 0.0031 22.3 5.2 69 34-114 56-124 (165)
23 4h51_A Aspartate aminotransfer 31.3 60 0.002 26.0 4.6 41 5-45 339-385 (420)
24 1olt_A Oxygen-independent copr 31.0 1.8E+02 0.006 23.4 7.4 36 28-66 147-182 (457)
25 2fgc_A Acetolactate synthase, 29.7 95 0.0032 23.0 5.2 70 34-114 81-150 (193)
26 4adn_A FAR1; antibiotic resist 28.0 66 0.0022 24.5 4.1 37 3-47 77-113 (222)
27 2bky_A DNA/RNA-binding protein 27.5 1.3E+02 0.0045 19.7 6.7 53 48-101 9-62 (97)
28 2yb5_A FUSC, putative fusidic 25.9 81 0.0028 23.9 4.2 37 3-47 69-105 (215)
29 2pjk_A 178AA long hypothetical 25.1 1.8E+02 0.0063 20.5 7.2 55 56-111 35-91 (178)
30 1t6a_A Rbstp2229 gene product; 24.9 85 0.0029 22.0 3.8 41 75-116 81-125 (126)
31 1nh2_B Transcription initiatio 24.5 54 0.0018 19.4 2.4 18 55-72 26-43 (53)
32 1p1x_A Deoxyribose-phosphate a 24.4 33 0.0011 26.5 1.8 75 35-109 90-172 (260)
33 2eez_A Alanine dehydrogenase; 23.7 1.6E+02 0.0055 22.8 5.8 59 19-79 5-73 (369)
34 3iyg_Z T-complex protein 1 sub 23.1 2.5E+02 0.0087 23.2 7.2 49 48-106 279-327 (517)
35 4fb5_A Probable oxidoreductase 22.8 99 0.0034 23.3 4.3 50 29-78 126-175 (393)
36 1vq8_G Acidic ribosomal protei 22.7 23 0.00077 28.7 0.6 44 8-56 21-64 (348)
37 2xry_A Deoxyribodipyrimidine p 22.3 1.9E+02 0.0065 23.4 6.2 51 57-111 113-163 (482)
38 3i38_A Putative chaperone DNAJ 22.1 52 0.0018 21.7 2.3 18 29-46 79-96 (109)
39 1zav_A 50S ribosomal protein L 21.6 2.1E+02 0.0073 20.2 5.7 28 31-58 32-62 (180)
40 3ndo_A Deoxyribose-phosphate a 21.5 79 0.0027 23.9 3.4 74 36-109 86-168 (231)
41 3lfu_A DNA helicase II; SF1 he 21.2 2.5E+02 0.0086 22.8 6.7 68 30-100 8-79 (647)
42 3bh7_B Protein XRP2; protein-p 21.0 3.2E+02 0.011 21.8 7.9 49 44-92 233-283 (352)
43 1nfj_A ALBA, conserved hypothe 21.0 1.7E+02 0.0059 18.7 6.8 59 48-107 3-63 (89)
44 2fts_A Gephyrin; gephyrin, neu 20.9 1.9E+02 0.0064 23.4 5.8 65 37-104 214-278 (419)
45 3lup_A DEGV family protein; PS 20.9 2.8E+02 0.0095 21.0 9.3 59 42-101 184-256 (285)
46 3sgf_H 50S ribosomal protein L 20.7 91 0.0031 22.0 3.5 54 7-64 12-65 (165)
47 2noc_A Putative periplasmic pr 20.7 1.9E+02 0.0065 19.0 5.2 41 78-118 43-91 (99)
48 3jsy_A Acidic ribosomal protei 20.1 65 0.0022 23.9 2.7 50 2-56 4-53 (213)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=100.00 E-value=1e-36 Score=214.07 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCC
Q 035824 31 ILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSN 110 (121)
Q Consensus 31 ~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~ 110 (121)
|||++||+|||++||+|+|+|+|||+||||+|+++|++||++||||||+|++++.++++++|++||+.|||++||+| |+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~I-G~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVI-GS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEE-TT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred EEEEEeCC
Q 035824 111 TIIFYRGK 118 (121)
Q Consensus 111 ~~iLYR~~ 118 (121)
++||||++
T Consensus 80 ~~VLYR~~ 87 (104)
T 1rq8_A 80 MIVIYRES 87 (104)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999987
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=100.00 E-value=1.5e-36 Score=211.06 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCC
Q 035824 31 ILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSN 110 (121)
Q Consensus 31 ~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~ 110 (121)
+||++||+|||++||+|+|+|+|||+||||+|+++|++||++||||||+|++++.+++++++++|++.|||++||+| |+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~I-G~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTI-GH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEE-TT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred EEEEEeCC
Q 035824 111 TIIFYRGK 118 (121)
Q Consensus 111 ~~iLYR~~ 118 (121)
++||||+.
T Consensus 81 ~~vLyR~~ 88 (98)
T 1jo0_A 81 ILVLYRPS 88 (98)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 3
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=82.99 E-value=3.7 Score=25.83 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.9
Q ss_pred CeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEe---eCCEEEEEeCCCCC
Q 035824 74 ETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDIN---PSNTIIFYRGKNYV 121 (121)
Q Consensus 74 ELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i---~G~~~iLYR~~ny~ 121 (121)
++|+.|--.-.+.+.++++.++.-.-.--+| .. .|.+-|+||+++.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~v-F~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFV-FQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEE-EEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEE-EEeCCCCCEEEEEEeCCCC
Confidence 4677777777778889999998776444444 44 38999999998753
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=77.98 E-value=3.3 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=29.8
Q ss_pred eeEEEecCCChHHHHHHHHHHHhHcCCEEEEEe---eCCEEEEEeCCCCC
Q 035824 75 TVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDIN---PSNTIIFYRGKNYV 121 (121)
Q Consensus 75 LIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i---~G~~~iLYR~~ny~ 121 (121)
+|+.+-..-.+.+.++++.++.-.-.--+| .. .|.+-|+||+++.+
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCCC
Confidence 344444445566778888888776555555 44 38999999998764
No 5
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=73.15 E-value=4.3 Score=25.56 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=31.9
Q ss_pred eeEEEecCCChHHHHHHHHHHHhHcCCEEEEEe---eCCEEEEEeCCCCC
Q 035824 75 TVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDIN---PSNTIIFYRGKNYV 121 (121)
Q Consensus 75 LIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i---~G~~~iLYR~~ny~ 121 (121)
+|+.+...-.+.+.++++.++.-. |-.+.=.. .|.+-|+||+++.+
T Consensus 3 iVr~K~~~~kpMsveEAv~qMel~-gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 3 VVRTKNVTLKPMDVEEARLQMELL-GHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCEECHHHHHHHHHTT-TCSEEEEEETTTCSEEEEEECTTSS
T ss_pred EEEEEEccCCCCCHHHHHHHHHcC-CCcEEEEEeCCCCCEEEEEEECCCC
Confidence 455555556667788888888765 44444244 38999999998753
No 6
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=68.10 E-value=22 Score=23.23 Aligned_cols=55 Identities=5% Similarity=-0.096 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHh---HcCCEEEEEeeCCEEEEEeCCCC
Q 035824 64 LNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQ---LSKGIVIDINPSNTIIFYRGKNY 120 (121)
Q Consensus 64 ~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~---~tga~vVq~i~G~~~iLYR~~ny 120 (121)
.+|-++|.....|=|.+.+.+.++.+.+.+.++. ..+|.+-. + |..+.|+=++|.
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k-I-~~~IFl~~P~~V 76 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK-I-DSVTFAVVPELS 76 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE-E-ETTEEEEECCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE-E-cCCEEEEECCCe
Confidence 5789999999999999999999999999999887 56999885 5 667777766664
No 7
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=60.67 E-value=19 Score=28.49 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecC---CCCcHHHHHH--------HHHHHHhCCeeEEEecCCCh
Q 035824 19 LPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGR---RGIFGGVVLN--------MHLHWKKHETVKVVSKPCEP 85 (121)
Q Consensus 19 ~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk---~Glt~~vi~~--------i~~al~~hELIKVk~~~~~~ 85 (121)
+|....+...+-.||++..+.|.+.||.. +|.=|. .|++|.-..+ ..+.|...++| +++.....
T Consensus 5 v~~e~~~~E~Rv~ltP~~v~~L~~~G~~V--~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~ 79 (377)
T 2vhw_A 5 IPTETKNNEFRVAITPAGVAELTRRGHEV--LIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLL-LKVKEPIA 79 (377)
T ss_dssp ECCCCSTTCCCCSCCHHHHHHHHHTTCEE--EEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCG
T ss_pred EEccCCCCCcccCcCHHHHHHHHhCCCEE--EEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEE-EEeCCCCh
Confidence 45444455567899999999999999765 666565 7999876653 46889888877 66665443
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=60.65 E-value=12 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=26.1
Q ss_pred HHHhhcCCCceEEecCCCCcHHHHHHHHHHHH
Q 035824 40 LKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWK 71 (121)
Q Consensus 40 LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~ 71 (121)
+..++.+-+|++.++.+|.++.+++-++...+
T Consensus 131 ~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~ 162 (189)
T 3sbx_A 131 EGYLGMHDKSIVVLDPWGHFDGLRAWLSELAD 162 (189)
T ss_dssp HHHTTSCCCCEEEECTTCTTHHHHHHHHHHHH
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHHH
Confidence 45566677999999999999999999875444
No 9
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=56.97 E-value=27 Score=22.54 Aligned_cols=61 Identities=8% Similarity=0.001 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhcCCCceEEe----cCCCCcHHHHHHHHHHHHhCCeeE-EEecC
Q 035824 22 APTEAYDPEILTDEERHYLKRTDEKKKNYVQV----GRRGIFGGVVLNMHLHWKKHETVK-VVSKP 82 (121)
Q Consensus 22 ~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~I----Gk~Glt~~vi~~i~~al~~hELIK-Vk~~~ 82 (121)
.+++..-...||+.|...|+.+.+.=++-+.. -+-|++.+.+..+-..|+...||| ++...
T Consensus 8 ~~~~~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~ 73 (91)
T 2dk5_A 8 DSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVA 73 (91)
T ss_dssp CCCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred CHHHHhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 34444446679999999999998744333332 266778888999999999999999 55444
No 10
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=53.93 E-value=63 Score=24.45 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHHHhccC-CCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHHHH
Q 035824 6 KEAWLIENLTKF-ELPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNM 66 (121)
Q Consensus 6 ~~~~~~~~l~~~-~~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i 66 (121)
.-..|++.+.+. .++|-.-.--.|..+|++..+.|+..+ .+=+.+.||-...++.++..|
T Consensus 72 ~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g-~~~~~l~i~lqs~s~~vl~~m 132 (304)
T 2qgq_A 72 ALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELD-KVVKYFDVPVQHGSDKILKLM 132 (304)
T ss_dssp CHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHCT-TBCCEEECCCBCSCHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhCC-CCccEEEEecccCCHHHHHHh
Confidence 346677878775 344321111246678999999998866 234678888777777665443
No 11
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=45.51 E-value=21 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHhhcCCCceEEecCCCCcHHHHHHHHHHH
Q 035824 40 LKRTDEKKKNYVQVGRRGIFGGVVLNMHLHW 70 (121)
Q Consensus 40 LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al 70 (121)
+..++.+-+|++.++.+|.++.+++-++...
T Consensus 140 ~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~ 170 (199)
T 3qua_A 140 AGYLGMHDKPLILLDPFGHYDGLLTWLRGLV 170 (199)
T ss_dssp HHHTTSCCCCEEEECTTSTTHHHHHHHHHTT
T ss_pred HHHhccCCCCEEEEcCCccchHHHHHHHHHH
Confidence 4556667799999999999999999997443
No 12
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=43.58 E-value=68 Score=21.12 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCceEEecCCCCcHHHHHH-HHHHHH--hCCeeEEEecCCChHHHHHHHHHHHhHcCCEEE
Q 035824 37 RHYLKRTDEKKKNYVQVGRRGIFGGVVLN-MHLHWK--KHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVI 104 (121)
Q Consensus 37 r~~LR~~a~~lkpvv~IGk~Glt~~vi~~-i~~al~--~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vV 104 (121)
+..++..+..-.|++..|..|.--+.+.. |+.... ...+| |.|...... ......+....++.++
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQGGTLV 81 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHTTSCEE
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcCCcEEE
Confidence 44556667788999999999999887654 444332 34688 888765432 2233344445555443
No 13
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=43.16 E-value=25 Score=26.23 Aligned_cols=32 Identities=6% Similarity=0.030 Sum_probs=26.7
Q ss_pred HHHhhcCCCceEEecCCCCcHHHHHHHHHHHH
Q 035824 40 LKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWK 71 (121)
Q Consensus 40 LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~ 71 (121)
+..++.+-+|++.++.+|.++.+++-++...+
T Consensus 132 ~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~ 163 (215)
T 2a33_A 132 WAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVE 163 (215)
T ss_dssp HHHTTSCCCCEEEECGGGTTHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEecCcchhHHHHHHHHHHHH
Confidence 56677788999999999999999998865544
No 14
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=43.07 E-value=23 Score=26.46 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhC-----CeeEEEecCCChHHHHHHHHHHHh
Q 035824 40 LKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKH-----ETVKVVSKPCEPWKIHEYAEVLAQ 97 (121)
Q Consensus 40 LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~h-----ELIKVk~~~~~~~~~~~~a~~L~~ 97 (121)
+..++.+-+|++.+|.+|.++.+++-++...+.. .+-.+.+.. +.+++.+.|++
T Consensus 128 ~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d----~~ee~~~~l~~ 186 (216)
T 1ydh_A 128 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAP----TAKELMEKMEE 186 (216)
T ss_dssp HHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEES----SHHHHHHHHHH
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeC----CHHHHHHHHHH
Confidence 4456678899999999999999999987554321 122233333 34556666654
No 15
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=42.32 E-value=1.1e+02 Score=24.48 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCC-CCCCCHHHHHHHHHhhcC----CCceEEecCCCCcHHH-HHHHHHHHHhCCeeEEEecCCC
Q 035824 17 FELPKAPTEAYD-PEILTDEERHYLKRTDEK----KKNYVQVGRRGIFGGV-VLNMHLHWKKHETVKVVSKPCE 84 (121)
Q Consensus 17 ~~~~~~~~~~~~-~e~LT~kqr~~LR~~a~~----lkpvv~IGk~Glt~~v-i~~i~~al~~hELIKVk~~~~~ 84 (121)
.+.||.|..+.- -..||++|+..+...... -.+++..|..|---+. +..+-.+|....--.|-+....
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 345666444333 356999999999976433 3499999988876665 4555556655443234444443
No 16
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=42.22 E-value=70 Score=24.07 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEecCCCCc---------------HHHHHHHHHHHHhCCeeEEEecCC-----ChHHHH
Q 035824 30 EILTDEERHYLKRTDEKKKNYVQVGRRGIF---------------GGVVLNMHLHWKKHETVKVVSKPC-----EPWKIH 89 (121)
Q Consensus 30 e~LT~kqr~~LR~~a~~lkpvv~IGk~Glt---------------~~vi~~i~~al~~hELIKVk~~~~-----~~~~~~ 89 (121)
+.++.++...||++...+|.++.||..+-+ ..++.++-+-+..+.+-=|.+.-. +.+..-
T Consensus 59 ~~~~~~~~~~lK~~~~~lKvllSiGG~~~~~~~~~~~~~~~~~~r~~fi~si~~~l~~~gfDGiDiDwE~p~~~d~~~~~ 138 (275)
T 3sim_A 59 SILGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDKNTFA 138 (275)
T ss_dssp TTSCHHHHHHHHHHCTTEEEEEEEECSEETTEECCCCCSCHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTSCHHHHH
T ss_pred ccccHHHHHHHHHhCCCCEEEEEEcCCCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhCCCeEEEEeecCCcccHHHHH
Confidence 357899999999999999999999965421 556899999999998877777643 233444
Q ss_pred HHHHHHHhHc
Q 035824 90 EYAEVLAQLS 99 (121)
Q Consensus 90 ~~a~~L~~~t 99 (121)
....+|....
T Consensus 139 ~ll~eLr~~l 148 (275)
T 3sim_A 139 ECIGRLITTL 148 (275)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555544
No 17
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=40.63 E-value=14 Score=26.95 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=33.4
Q ss_pred HhhcCCCceEEecCCCCcHHHHHHHHHHHHh-----CCeeEEEecCCChHHHHHHHHHHHh
Q 035824 42 RTDEKKKNYVQVGRRGIFGGVVLNMHLHWKK-----HETVKVVSKPCEPWKIHEYAEVLAQ 97 (121)
Q Consensus 42 ~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~-----hELIKVk~~~~~~~~~~~~a~~L~~ 97 (121)
.++.+-+|++.+|.+|.++.+++-++...+. ..+-.+.+.. +.+++.+.|++
T Consensus 122 q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~----~~~e~~~~l~~ 178 (191)
T 1t35_A 122 QIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSS----RPDELIEQMQN 178 (191)
T ss_dssp SCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEES----SHHHHHHHHHT
T ss_pred HhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeC----CHHHHHHHHHH
Confidence 3444559999999999999999988654443 1222344433 34556666655
No 18
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=39.06 E-value=23 Score=22.30 Aligned_cols=18 Identities=6% Similarity=0.359 Sum_probs=14.5
Q ss_pred EEEEe-eCCEEEEEeCCCC
Q 035824 103 VIDIN-PSNTIIFYRGKNY 120 (121)
Q Consensus 103 vVq~i-~G~~~iLYR~~ny 120 (121)
+||.+ -|+.+|||-|.||
T Consensus 23 ~VQRvsdgkaaVLFEGGnW 41 (66)
T 2jz2_A 23 LVQRVSDGKAAVLFENGNW 41 (66)
T ss_dssp EEEEEETTEEEEEEESSSC
T ss_pred EEEEecCCcEEEEecCCCc
Confidence 45555 5799999999998
No 19
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=38.93 E-value=84 Score=20.88 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred CceEEecCCCCcHHHHHHHHHHHHh-CCeeEEEecCCChHHHHHHHHHHHhHc-CCEEEEEe
Q 035824 48 KNYVQVGRRGIFGGVVLNMHLHWKK-HETVKVVSKPCEPWKIHEYAEVLAQLS-KGIVIDIN 107 (121)
Q Consensus 48 kpvv~IGk~Glt~~vi~~i~~al~~-hELIKVk~~~~~~~~~~~~a~~L~~~t-ga~vVq~i 107 (121)
...+.||+.|+..-|...+...|+. +.=|.++-.+..-...=.+|+.|.++. ++.-||.+
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i 67 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDI 67 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEE
Confidence 4789999999977777777466765 678889988988778888999999999 56554554
No 20
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=34.14 E-value=72 Score=22.77 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCCEEE
Q 035824 34 DEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNTII 113 (121)
Q Consensus 34 ~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~~~i 113 (121)
.++...+.++.+++.+++.+-.-.=.+. -.+||+=||+..++ .+ +.-...+++..+|.+|.+- -.+++
T Consensus 55 ~~~leqI~kqL~Kl~dV~~V~r~~~~~~---------v~rEl~liKv~~~~-~~-r~~i~~~~~~fra~ivdv~-~~~~~ 122 (164)
T 2f1f_A 55 EKVLEQIEKQLHKLVDVLRVSELGQGAH---------VEREIMLVKIQASG-YG-RDEVKRNTEIFRGQIIDVT-PSLYT 122 (164)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEGGGSCE---------EEEEEEEEEEECCT-HH-HHHHHHHHHHTTCEEEEEC-SSEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCccc---------ceeEEEEEEEECCc-cc-HHHHHHHHHHcCCEEEEEC-CCEEE
Confidence 6788899999999999988864321111 23675555544332 33 4456678899999999875 45555
Q ss_pred E
Q 035824 114 F 114 (121)
Q Consensus 114 L 114 (121)
+
T Consensus 123 i 123 (164)
T 2f1f_A 123 V 123 (164)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.60 E-value=38 Score=21.62 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=18.1
Q ss_pred HHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhh
Q 035824 12 ENLTKFELPKAPTEAYDPEILTDEERHYLKRTD 44 (121)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a 44 (121)
.-|+++-+... ||..||++|++.+-++-
T Consensus 35 ~RL~kLGI~kt-----dP~~LT~eEi~~FaRLd 62 (71)
T 2eo2_A 35 SRLKKLGIHKT-----DPSTLTEEEVRKFARLN 62 (71)
T ss_dssp HHHHHHTCCCC-----STTTCCHHHHHHHHHTC
T ss_pred HHHHHcCCCCC-----CcccCCHHHHhhceecc
Confidence 44555555544 56778888888776654
No 22
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=31.41 E-value=91 Score=22.31 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCCEEE
Q 035824 34 DEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNTII 113 (121)
Q Consensus 34 ~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~~~i 113 (121)
.++...+.++.+++.+++.+=.-.=. ..-.+||+=||+..+. .+ +.-...+++..+|.+|.+- -.+++
T Consensus 56 ~~~leql~kQL~Kl~dV~~V~~~~~~---------~~v~rEl~liKv~~~~-~~-r~~i~~~~~~fra~ivdv~-~~~~~ 123 (165)
T 2pc6_A 56 DEIVEQITKQLNKLIEVVKLIDLSSE---------GYVERELMLVKVRAVG-KD-REEMKRLADIFRGNIIDVT-NELYT 123 (165)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEGGGS---------CEEEEEEEEEEEECCT-HH-HHHHHHHHHHTTCEEEEEE-TTEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCc---------ceeeeEEEEEEEeCCc-cc-HHHHHHHHHHcCCEEEEEc-CCEEE
Confidence 67888899999999998887542111 1123675555554332 33 4556678899999999975 45555
Q ss_pred E
Q 035824 114 F 114 (121)
Q Consensus 114 L 114 (121)
+
T Consensus 124 i 124 (165)
T 2pc6_A 124 I 124 (165)
T ss_dssp E
T ss_pred E
Confidence 4
No 23
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=31.29 E-value=60 Score=26.05 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=25.3
Q ss_pred hHHHHHHHHhccCCCC--CC--CCCCCC--CCCCCHHHHHHHHHhhc
Q 035824 5 RKEAWLIENLTKFELP--KA--PTEAYD--PEILTDEERHYLKRTDE 45 (121)
Q Consensus 5 ~~~~~~~~~l~~~~~~--~~--~~~~~~--~e~LT~kqr~~LR~~a~ 45 (121)
++-..|.+.|.+.-.| |. +.|..- -..||++|-..|+..+-
T Consensus 339 ~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L~e~~V 385 (420)
T 4h51_A 339 TMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEYCQNHNI 385 (420)
T ss_dssp HHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHHHHHhCCE
Confidence 3455677888887766 43 222110 13589999988987543
No 24
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=31.03 E-value=1.8e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHHHH
Q 035824 28 DPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNM 66 (121)
Q Consensus 28 ~~e~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i 66 (121)
+|..+|.+..+.|+..|. ..|.||-...++.++..|
T Consensus 147 ~p~~l~~e~l~~L~~~G~---~rislGvQS~~~~~l~~i 182 (457)
T 1olt_A 147 DPREIELDVLDHLRAEGF---NRLSMGVQDFNKEVQRLV 182 (457)
T ss_dssp CSSSCCTHHHHHHHHTTC---CEEEEEEECCCHHHHHHH
T ss_pred ccCcCCHHHHHHHHHcCC---CEEEEeeccCCHHHHHHh
Confidence 466799999999999983 688899777777765443
No 25
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=29.75 E-value=95 Score=23.02 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCCEEE
Q 035824 34 DEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNTII 113 (121)
Q Consensus 34 ~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~~~i 113 (121)
......|.++.+++-+++.+=- +|+. ....-.+||+=||+..+.. +.-+..|++...|.+|.+- -.+++
T Consensus 81 e~~ieqL~kQL~KLidVikV~d--l~~~-----~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~-~~s~~ 149 (193)
T 2fgc_A 81 DKTIEQIEKQAYKLVEVVKVTP--IDPL-----PENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVS-REGAI 149 (193)
T ss_dssp TTHHHHHHHHHTTSTTEEEEEE--CCSS-----GGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEEC-SSEEE
T ss_pred HHHHHHHHHHhcCcCceEEEEE--ecCC-----CCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEc-CCEEE
Confidence 4578889999999999988753 3320 0011236754444433322 5556678889999999975 45555
Q ss_pred E
Q 035824 114 F 114 (121)
Q Consensus 114 L 114 (121)
+
T Consensus 150 i 150 (193)
T 2fgc_A 150 I 150 (193)
T ss_dssp E
T ss_pred E
Confidence 4
No 26
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=28.05 E-value=66 Score=24.54 Aligned_cols=37 Identities=5% Similarity=0.172 Sum_probs=29.2
Q ss_pred hHhHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCC
Q 035824 3 EKRKEAWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKK 47 (121)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a~~l 47 (121)
.++..+.++++|+.|-.|.+ +||.+|.+.+=..+-+|
T Consensus 77 t~~~~e~~L~~Lk~yV~pm~--------~lTe~qIrk~F~kaKkL 113 (222)
T 4adn_A 77 SNKEIEAILNKFLEYVVPFE--------LPSPQKLQKVFKKVKKI 113 (222)
T ss_dssp CHHHHHHHHHHHHTTBCCCC--------CCCHHHHHHHTTTSTTC
T ss_pred CHHHHHHHHHHHHHHHcCCC--------CCCHHHHHHHhhhhhcc
Confidence 35688999999999999988 68999887765545444
No 27
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=27.50 E-value=1.3e+02 Score=19.67 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred CceEEecCCCCcHHHHHHHHHHHHh-CCeeEEEecCCChHHHHHHHHHHHhHcCC
Q 035824 48 KNYVQVGRRGIFGGVVLNMHLHWKK-HETVKVVSKPCEPWKIHEYAEVLAQLSKG 101 (121)
Q Consensus 48 kpvv~IGk~Glt~~vi~~i~~al~~-hELIKVk~~~~~~~~~~~~a~~L~~~tga 101 (121)
+..+.||+.|+. +-+...-..|+. +.=|.++-.+..-...=.+|+.|.++..+
T Consensus 9 ~n~I~V~~k~v~-~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~ 62 (97)
T 2bky_A 9 SNVVLIGKKPVM-NYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLP 62 (97)
T ss_dssp CCEEECCSSCHH-HHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTST
T ss_pred CCEEEEcCcCHH-HHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccC
Confidence 578999999965 444444456665 78899999998877788899999999855
No 28
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=25.87 E-value=81 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred hHhHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCC
Q 035824 3 EKRKEAWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKK 47 (121)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a~~l 47 (121)
.++..+.++++|+.|-.|.. +||.+|.+.+=..+.+|
T Consensus 69 ~~~~~e~~L~~Lk~yV~pm~--------~lTe~qIrk~F~KaKkL 105 (215)
T 2yb5_A 69 TKKKAEHLLNELKVYIQDFE--------IPSSSQLEKIFRKVKKL 105 (215)
T ss_dssp CHHHHHHHHHHHGGGBCCCC--------CCCHHHHHHHTTTCSSC
T ss_pred CHHHHHHHHHHHHHHhccCC--------CCCHHHHHHHhhhHHhc
Confidence 35778999999999999988 58999877764445555
No 29
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.07 E-value=1.8e+02 Score=20.48 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHHh--CCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCCE
Q 035824 56 RGIFGGVVLNMHLHWKK--HETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNT 111 (121)
Q Consensus 56 ~Glt~~vi~~i~~al~~--hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~~ 111 (121)
.-+.|+--..+...|+. .+++...+...+.+...+......+..++.+| ++.|.+
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlV-ittGG~ 91 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVI-ISTGGT 91 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEE-EEESCC
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEE-EECCCC
Confidence 34667666667777766 46666666555555444443333333347777 444643
No 30
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=24.87 E-value=85 Score=21.99 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=32.7
Q ss_pred eeEEEecCCC----hHHHHHHHHHHHhHcCCEEEEEeeCCEEEEEe
Q 035824 75 TVKVVSKPCE----PWKIHEYAEVLAQLSKGIVIDINPSNTIIFYR 116 (121)
Q Consensus 75 LIKVk~~~~~----~~~~~~~a~~L~~~tga~vVq~i~G~~~iLYR 116 (121)
-|.|.+..++ .....|.+..||...+|++= .-.|+++.+|.
T Consensus 81 fIQi~LP~~AThGDKgKANEfckfLAK~l~geL~-LFNGR~Myfyk 125 (126)
T 1t6a_A 81 FIDIALPPGATHGDKGKANEFSKWLAKTLGGELH-LFSGRTMVFGS 125 (126)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHCEEEE-CTTSCEEEEC-
T ss_pred eEEEECCCCCCcCcchhHHHHHHHHHHHhhhhee-eecCeEEEEec
Confidence 5777777764 45678999999999999997 44699999986
No 31
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=24.51 E-value=54 Score=19.45 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 035824 55 RRGIFGGVVLNMHLHWKK 72 (121)
Q Consensus 55 k~Glt~~vi~~i~~al~~ 72 (121)
-.|+.++|+.++..-|+.
T Consensus 26 ~~Gvde~vL~eLk~~We~ 43 (53)
T 1nh2_B 26 NAGIDEQTLQDLKNIWQK 43 (53)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHH
Confidence 369999999999999975
No 32
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Probab=24.41 E-value=33 Score=26.46 Aligned_cols=75 Identities=11% Similarity=-0.066 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCCceEEec--CCCCcHHHHHHHHHHHHhC----CeeEEEecCCCh--HHHHHHHHHHHhHcCCEEEEE
Q 035824 35 EERHYLKRTDEKKKNYVQVG--RRGIFGGVVLNMHLHWKKH----ETVKVVSKPCEP--WKIHEYAEVLAQLSKGIVIDI 106 (121)
Q Consensus 35 kqr~~LR~~a~~lkpvv~IG--k~Glt~~vi~~i~~al~~h----ELIKVk~~~~~~--~~~~~~a~~L~~~tga~vVq~ 106 (121)
+=+..++.=|..++-++.+| +.|-.+.|.++|...-+.. -.+||.+..... ++....+-.++...|+.+|..
T Consensus 90 E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKT 169 (260)
T 1p1x_A 90 ETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKT 169 (260)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEe
Confidence 34556777778889999999 6999999988877655542 378998865432 333456888999999999965
Q ss_pred eeC
Q 035824 107 NPS 109 (121)
Q Consensus 107 i~G 109 (121)
--|
T Consensus 170 STG 172 (260)
T 1p1x_A 170 STG 172 (260)
T ss_dssp CCS
T ss_pred CCC
Confidence 334
No 33
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=23.67 E-value=1.6e+02 Score=22.84 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecC---CCCcHHHHHHH-------HHHHHhCCeeEEE
Q 035824 19 LPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGR---RGIFGGVVLNM-------HLHWKKHETVKVV 79 (121)
Q Consensus 19 ~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk---~Glt~~vi~~i-------~~al~~hELIKVk 79 (121)
+|....+...+-.||++..+.|.+.||.. +|.-|. .|++|.-..+. .+.|+..=++||+
T Consensus 5 ~~~e~~~~e~Rv~l~P~~v~~L~~~g~~v--~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~~ad~il~vk 73 (369)
T 2eez_A 5 VPKEIKTLENRVALTPGGVESLVRRGHTV--LVERGAGEGSGLSDAEYARAGAELVGREEAWGAEMVVKVK 73 (369)
T ss_dssp ECCCCSTTCCCCSSCHHHHHHHHHTTCEE--EEETTTTGGGTCCHHHHHHHTCEEECHHHHTTSSEEECSS
T ss_pred EEccCCCCCceeCcCHHHHHHHHhCCCEE--EEeCCCCccCCCCHHHHHHCCCEEecccceecCCEEEEEC
Confidence 45444455668899999999999999875 777666 79998765431 4478333344444
No 34
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.10 E-value=2.5e+02 Score=23.21 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred CceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEE
Q 035824 48 KNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDI 106 (121)
Q Consensus 48 kpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~ 106 (121)
+|.|.|-..|+.+....-+. .+-.+.|+-. . +...+.|+..|||.+|..
T Consensus 279 ~~lvIi~~~~I~d~al~~L~----~~gI~~v~~v--~----~~~leria~~tGa~iv~~ 327 (517)
T 3iyg_Z 279 KGFVVINQKGIDPFSLDALA----KEGIIALRRA--K----RRNMERLTLACGGIALNS 327 (517)
T ss_pred CceEEEecccCCHHHHHHHH----HCCCEEEEec--C----HHHHHHHHHHhCCEEecc
Confidence 57788888899887776544 4667666643 2 334678888999998853
No 35
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=22.75 E-value=99 Score=23.29 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEE
Q 035824 29 PEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKV 78 (121)
Q Consensus 29 ~e~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKV 78 (121)
|-.+|.+|-+.|...+..-+-++++|-+--+...+..+.+.++.-++=+|
T Consensus 126 Pla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G~iG~i 175 (393)
T 4fb5_A 126 PMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDGVIGRV 175 (393)
T ss_dssp CSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTTTTCSE
T ss_pred CCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcCCCccc
Confidence 56799999999999999999999999999999999999999998765444
No 36
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=22.65 E-value=23 Score=28.68 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=5.5
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecCC
Q 035824 8 AWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGRR 56 (121)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk~ 56 (121)
+.+.+.|+++...+-- +-..||..|...||+.-..- ..+.+|||
T Consensus 21 ~eL~e~l~~~~~v~vv----dy~GLtv~ql~~LR~~lR~~-~~~~V~KN 64 (348)
T 1vq8_G 21 DAIVEMIESYESVGVV----NIAGIPSRQLQDMRRDLHGT-AELRVSRN 64 (348)
T ss_dssp HHHHHHHHC--------------------------------------CH
T ss_pred HHHHHHHHhCCEEEEE----ECCCCCHHHHHHHHHHHHhc-ceEEEeHH
Confidence 3444555555444331 12245555555555544333 45555555
No 37
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=22.25 E-value=1.9e+02 Score=23.43 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEEEEeeCCE
Q 035824 57 GIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVIDINPSNT 111 (121)
Q Consensus 57 Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vVq~i~G~~ 111 (121)
|=...++.++-+.+ ..-.|.+........++..+.+++.+|..+.++- +++
T Consensus 113 g~~~~~l~~l~~~~---~~~~V~~~~~~~~~~~~~~~~v~~~lgi~~~~~~-~~~ 163 (482)
T 2xry_A 113 GDPGEKISRFVKDY---NAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVD-AHN 163 (482)
T ss_dssp SCHHHHHHHHHHHT---TCSEEEEECCCSHHHHHHHHHHHHHCCSCEEEEC-CSS
T ss_pred CCHHHHHHHHHHHc---CCCEEEEecccchhHHHHHHHHHHHcCCEEEEEe-CCE
Confidence 44555565555554 4455666665555556666777777788888764 654
No 38
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=22.07 E-value=52 Score=21.71 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHhhcC
Q 035824 29 PEILTDEERHYLKRTDEK 46 (121)
Q Consensus 29 ~e~LT~kqr~~LR~~a~~ 46 (121)
|..||++|+..|+.++..
T Consensus 79 P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAA 96 (109)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 677999999999998754
No 39
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=21.60 E-value=2.1e+02 Score=20.20 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHhhcCC---CceEEecCCCC
Q 035824 31 ILTDEERHYLKRTDEKK---KNYVQVGRRGI 58 (121)
Q Consensus 31 ~LT~kqr~~LR~~a~~l---kpvv~IGk~Gl 58 (121)
.||.+|...||+.-..- ...+.++||-+
T Consensus 32 gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL 62 (180)
T 1zav_A 32 GFTVADLTELRSRLREKYGDGARFRVVKNTL 62 (180)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHhcccCCeEEEEehHHH
Confidence 46666666666555443 45556666544
No 40
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=21.45 E-value=79 Score=23.94 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCceEEecC--CCCcHHHHHHHHHHHHhCC--eeEEEecCCCh-----HHHHHHHHHHHhHcCCEEEEE
Q 035824 36 ERHYLKRTDEKKKNYVQVGR--RGIFGGVVLNMHLHWKKHE--TVKVVSKPCEP-----WKIHEYAEVLAQLSKGIVIDI 106 (121)
Q Consensus 36 qr~~LR~~a~~lkpvv~IGk--~Glt~~vi~~i~~al~~hE--LIKVk~~~~~~-----~~~~~~a~~L~~~tga~vVq~ 106 (121)
=+..++.=|..++-++.+|. +|-++.|.++|...-+... .+||.+..... ++-...+-.|+...|+.+|..
T Consensus 86 ~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKT 165 (231)
T 3ndo_A 86 AELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKT 165 (231)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEc
Confidence 34566666778999999995 7999999988887766643 67888765322 233445567888899999965
Q ss_pred eeC
Q 035824 107 NPS 109 (121)
Q Consensus 107 i~G 109 (121)
--|
T Consensus 166 STG 168 (231)
T 3ndo_A 166 STG 168 (231)
T ss_dssp CCS
T ss_pred CCC
Confidence 334
No 41
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=21.16 E-value=2.5e+02 Score=22.84 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEecCC--CCcHHHHHHHHHHHHhCCe--eEEEecCCChHHHHHHHHHHHhHcC
Q 035824 30 EILTDEERHYLKRTDEKKKNYVQVGRR--GIFGGVVLNMHLHWKKHET--VKVVSKPCEPWKIHEYAEVLAQLSK 100 (121)
Q Consensus 30 e~LT~kqr~~LR~~a~~lkpvv~IGk~--Glt~~vi~~i~~al~~hEL--IKVk~~~~~~~~~~~~a~~L~~~tg 100 (121)
..||++|++... +.-.|++.+|.. |=|-.++..|...+..+.. -+|-+...+..-.+++.+.|....|
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 469999999997 456788888865 5677778888877776421 2455555566666777777777654
No 42
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=21.03 E-value=3.2e+02 Score=21.81 Aligned_cols=49 Identities=4% Similarity=-0.186 Sum_probs=40.5
Q ss_pred hcCCCceEEecCCCCcHHHHHHHHHHHHhC--CeeEEEecCCChHHHHHHH
Q 035824 44 DEKKKNYVQVGRRGIFGGVVLNMHLHWKKH--ETVKVVSKPCEPWKIHEYA 92 (121)
Q Consensus 44 a~~lkpvv~IGk~Glt~~vi~~i~~al~~h--ELIKVk~~~~~~~~~~~~a 92 (121)
...-+.++.|.-+|+..+++.+|-..++.. .++..|..+-+.++..+.-
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y 283 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVF 283 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHH
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHH
Confidence 344567999999999999999999999997 5888898888877766553
No 43
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=20.97 E-value=1.7e+02 Score=18.71 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=44.0
Q ss_pred CceEEecCCCCcHHHHHHHHHHHHh-CCeeEEEecCCChHHHHHHHHHHHhHc-CCEEEEEe
Q 035824 48 KNYVQVGRRGIFGGVVLNMHLHWKK-HETVKVVSKPCEPWKIHEYAEVLAQLS-KGIVIDIN 107 (121)
Q Consensus 48 kpvv~IGk~Glt~~vi~~i~~al~~-hELIKVk~~~~~~~~~~~~a~~L~~~t-ga~vVq~i 107 (121)
+..+.||+.|+..-|...+. .|+. +.=|.++-.+..-...=.+|+.|.++. .+.-++-+
T Consensus 3 ~n~I~V~~k~v~~yV~~~~~-~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i 63 (89)
T 1nfj_A 3 EHVVYVGNKPVMNYVLATLT-QLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEI 63 (89)
T ss_dssp CEEEECCSSCHHHHHHHHHH-HHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHH-HHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 35789999997766655555 4655 788999999988777888999999988 54333433
No 44
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=20.95 E-value=1.9e+02 Score=23.41 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCceEEecCCCCcHHHHHHHHHHHHhCCeeEEEecCCChHHHHHHHHHHHhHcCCEEE
Q 035824 37 RHYLKRTDEKKKNYVQVGRRGIFGGVVLNMHLHWKKHETVKVVSKPCEPWKIHEYAEVLAQLSKGIVI 104 (121)
Q Consensus 37 r~~LR~~a~~lkpvv~IGk~Glt~~vi~~i~~al~~hELIKVk~~~~~~~~~~~~a~~L~~~tga~vV 104 (121)
...|+..|.....+..++-+ .+.+.+.+.++++...+| |..-+.+..+.+-+.+.|++..|+.++
T Consensus 214 ~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~DlV-ittGG~s~g~~D~t~~al~~~lg~~~~ 278 (419)
T 2fts_A 214 LATIQEHGYPTINLGIVGDN--PDDLLNALNEGISRADVI-ITSGGVSMGEKDYLKQVLDIDLHAQIH 278 (419)
T ss_dssp HHHHHTTTCCEEEEEEECSS--HHHHHHHHHHHHHHCSEE-EEESCCSSSCCHHHHHHHHTTTCCEEE
T ss_pred HHHHHHCCCEEEEEeecCCC--HHHHHHHHHHHHhcCCEE-EEcCCCcCCCcccHHHHHHHHcCCceE
Confidence 55677777665555555554 467778888888888988 666666655556677777778887665
No 45
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=20.94 E-value=2.8e+02 Score=21.04 Aligned_cols=59 Identities=10% Similarity=-0.020 Sum_probs=39.2
Q ss_pred HhhcCCCceEEecCCCCc-------------HHHHHHHHHHHHhCCeeEEEe-cCCChHHHHHHHHHHHhHcCC
Q 035824 42 RTDEKKKNYVQVGRRGIF-------------GGVVLNMHLHWKKHETVKVVS-KPCEPWKIHEYAEVLAQLSKG 101 (121)
Q Consensus 42 ~~a~~lkpvv~IGk~Glt-------------~~vi~~i~~al~~hELIKVk~-~~~~~~~~~~~a~~L~~~tga 101 (121)
+-...+||++.+-.+|-. ..+++.+.+...... .+|-+ ..++.++.+++.+.|.+..+.
T Consensus 184 g~lL~IKPIl~~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~~~~-~~v~i~h~~~~e~a~~l~~~l~~~~~~ 256 (285)
T 3lup_A 184 GNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGE-YDIAIIHSRAQDKAEQLYNLLAKAGLK 256 (285)
T ss_dssp HHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSC-EEEEEEESSCHHHHHHHHHHHHHTTCG
T ss_pred HHhhCcEEEEEEccCceEEEeeecCCHHHHHHHHHHHHHHhhcCCC-cEEEEEeCCCHHHHHHHHHHHHhhCCC
Confidence 445679999999766732 345566655555433 34444 356778889999999887654
No 46
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=20.73 E-value=91 Score=22.03 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecCCCCcHHHHH
Q 035824 7 EAWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGRRGIFGGVVL 64 (121)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk~Glt~~vi~ 64 (121)
.+.+-+.++++..-.- -+-..||.+|...||+....-...+.++||-+..--++
T Consensus 12 V~el~~~l~~~~~v~v----~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~ 65 (165)
T 3sgf_H 12 VAEVSEVAKGALSAVV----ADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVE 65 (165)
T ss_dssp HHHHHHHHSCSCEEEC----CCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTT
T ss_pred HHHHHHHHHhCCEEEE----EEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHh
Confidence 4556666666654422 13457999999999999988888999999987654443
No 47
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=20.70 E-value=1.9e+02 Score=19.05 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.1
Q ss_pred EEecC-CChHHHHHHHHHHHhHcCCEEEEEee-------CCEEEEEeCC
Q 035824 78 VVSKP-CEPWKIHEYAEVLAQLSKGIVIDINP-------SNTIIFYRGK 118 (121)
Q Consensus 78 Vk~~~-~~~~~~~~~a~~L~~~tga~vVq~i~-------G~~~iLYR~~ 118 (121)
|.+.+ .++.|.++....-++.-||.-..+|. =-++.|||..
T Consensus 43 ISvsg~~s~~da~~~La~kAd~~GA~~Y~Iis~~~~~~~~~tA~iYk~~ 91 (99)
T 2noc_A 43 ISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK 91 (99)
T ss_dssp EECCSCCCHHHHHHHHHHHHHHTCCSEEECCSCCSSSSCCCEEEEEEEC
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcEEEEEEeecCc
Confidence 34444 77888888889999999998776651 1378899853
No 48
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=20.08 E-value=65 Score=23.86 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCceEEecCC
Q 035824 2 KEKRKEAWLIENLTKFELPKAPTEAYDPEILTDEERHYLKRTDEKKKNYVQVGRR 56 (121)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~LT~kqr~~LR~~a~~lkpvv~IGk~ 56 (121)
.++.-.+.+.+.|+++...+-- +-..||.+|...||+.-..- ..+.+|||
T Consensus 4 ~K~~~v~el~e~l~~~~~v~v~----~~~gl~~~ql~~lR~~lr~~-~~~~v~KN 53 (213)
T 3jsy_A 4 WKIEEVKTLKGLIKSKPVVAIV----DMMDVPAPQLQEIRDKIRDK-VKLRMSRN 53 (213)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEE----ECCSCCHHHHHHHHHHHTTT-EEEEECCH
T ss_pred HHHHHHHHHHHHHHhCCEEEEE----EcCCCCHHHHHHHHHHHhCC-CEEEEEeH
Done!