BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035828
         (781 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 35.4 bits (80), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI-KNLP 718
           +L +A    G  DE ++YY   LE  D R   E    + +   + G   EA E+  K L 
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALE-LDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 719 IQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777
           + P+    W  + +A    GD     +  +   +L+P +   + +L N Y   G + +A+
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123

Query: 778 E 778
           E
Sbjct: 124 E 124



 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQY 677
           +S  AW ++ +AY   G   EAIE + +      R +  +  +L +A    G  DE ++Y
Sbjct: 33  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEY 91

Query: 678 YNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI-KNLPIQPK 722
           Y   L E D R   E    + +   + G   EA E+  K L + P+
Sbjct: 92  YQKAL-ELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSV-ISLLSACSHSG 669
           L++Y N  +  AW ++ +AY   G   EAIE + +     + P  +    +L +A    G
Sbjct: 36  LELYPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LYPNNAEAWYNLGNAYYKQG 91

Query: 670 LVDEGLQYYNNMLEEYDVRPETEHHV 695
             DE ++YY   LE Y    E + ++
Sbjct: 92  DYDEAIEYYQKALELYPNNAEAKQNL 117


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 30.4 bits (67), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 703 RSGKLQEAYEFI-KNLPIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760
           + G   EA E+  K L + P     W  + +A    GD     +  +   +L+P N   +
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80

Query: 761 ISLSNMYVALGRWKDAVE 778
            +L N Y   G + +A+E
Sbjct: 81  YNLGNAYYKQGDYDEAIE 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,155,282
Number of Sequences: 62578
Number of extensions: 857229
Number of successful extensions: 1834
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 10
length of query: 781
length of database: 14,973,337
effective HSP length: 106
effective length of query: 675
effective length of database: 8,340,069
effective search space: 5629546575
effective search space used: 5629546575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)