Query 035828
Match_columns 781
No_of_seqs 567 out of 3079
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 06:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.3E-93 1.6E-97 801.6 71.7 652 35-781 48-715 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-84 3.2E-89 734.1 64.8 597 2-717 116-717 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.5E-68 1.6E-72 582.7 53.3 532 69-656 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8.6E-67 1.9E-71 574.4 53.8 527 171-724 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.6E-66 7.9E-71 570.2 53.5 511 36-656 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-65 4.9E-70 563.9 52.9 468 136-781 84-552 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-39 5E-44 378.3 73.9 754 8-781 91-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-38 4.5E-43 370.2 72.1 748 12-780 27-860 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-25 3.7E-30 259.6 58.3 651 42-781 32-735 (1157)
10 PRK11447 cellulose synthase su 100.0 2.1E-23 4.6E-28 242.3 61.5 626 12-751 33-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.7E-23 6E-28 229.1 57.1 647 51-779 57-733 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.4E-21 9.5E-26 211.8 55.9 493 221-780 160-700 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 9.3E-20 2E-24 177.4 31.2 242 512-775 258-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.5E-23 169.9 30.2 353 402-780 115-479 (966)
15 KOG2002 TPR-containing nuclear 99.9 1.2E-16 2.6E-21 164.7 45.2 660 38-770 41-763 (1018)
16 KOG4318 Bicoid mRNA stability 99.8 3.7E-17 8E-22 166.2 35.5 634 58-775 10-757 (1088)
17 TIGR00990 3a0801s09 mitochondr 99.8 6.9E-17 1.5E-21 176.4 40.7 91 245-339 130-220 (615)
18 KOG4422 Uncharacterized conser 99.8 1.5E-15 3.3E-20 141.9 39.1 343 139-518 116-480 (625)
19 PRK15174 Vi polysaccharide exp 99.8 9.5E-17 2.1E-21 174.2 35.0 326 406-758 45-387 (656)
20 PRK11788 tetratricopeptide rep 99.8 2.7E-17 5.8E-22 170.8 29.4 294 251-605 44-354 (389)
21 PRK11788 tetratricopeptide rep 99.8 3.9E-17 8.5E-22 169.6 30.1 287 444-752 44-347 (389)
22 KOG2002 TPR-containing nuclear 99.8 1.2E-14 2.7E-19 150.1 45.3 548 54-682 146-743 (1018)
23 KOG4422 Uncharacterized conser 99.8 2.4E-15 5.3E-20 140.6 36.2 422 38-498 116-588 (625)
24 PRK10049 pgaA outer membrane p 99.8 2.5E-15 5.5E-20 167.0 41.9 151 628-780 280-450 (765)
25 PRK14574 hmsH outer membrane p 99.8 1E-14 2.2E-19 158.4 42.5 182 252-496 44-228 (822)
26 PRK15174 Vi polysaccharide exp 99.8 4.9E-15 1.1E-19 161.0 39.1 349 223-684 17-381 (656)
27 KOG4318 Bicoid mRNA stability 99.8 3.8E-14 8.3E-19 144.7 40.1 677 1-737 19-828 (1088)
28 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-14 4.6E-19 157.0 41.5 91 214-307 130-223 (615)
29 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.3E-17 135.2 47.7 619 85-781 151-890 (895)
30 PRK10049 pgaA outer membrane p 99.7 1.9E-14 4.1E-19 160.1 38.3 363 400-781 12-417 (765)
31 KOG0495 HAT repeat protein [RN 99.7 1.5E-11 3.4E-16 121.8 51.7 449 250-780 414-874 (913)
32 PRK14574 hmsH outer membrane p 99.7 1E-13 2.3E-18 150.6 39.9 383 379-780 45-473 (822)
33 KOG2076 RNA polymerase III tra 99.7 3.8E-12 8.2E-17 131.2 43.2 597 120-770 151-787 (895)
34 KOG0495 HAT repeat protein [RN 99.6 1.4E-09 3E-14 108.3 50.3 470 114-765 412-893 (913)
35 KOG2003 TPR repeat-containing 99.6 2.8E-12 6E-17 121.2 29.4 201 549-771 502-708 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 4.9E-15 1.1E-19 145.0 11.1 249 511-781 13-272 (280)
37 KOG0547 Translocase of outer m 99.6 1.2E-11 2.5E-16 118.5 31.0 211 547-780 336-560 (606)
38 KOG2003 TPR repeat-containing 99.5 6.1E-12 1.3E-16 118.9 25.2 201 380-584 502-709 (840)
39 KOG1126 DNA-binding cell divis 99.5 3.9E-12 8.5E-17 127.1 21.0 245 477-777 359-611 (638)
40 KOG0985 Vesicle coat protein c 99.5 1.5E-07 3.3E-12 98.5 53.5 594 111-770 609-1326(1666)
41 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 110.2 29.6 152 622-778 366-528 (559)
42 PRK10747 putative protoheme IX 99.4 6.8E-11 1.5E-15 121.2 27.4 249 517-781 129-385 (398)
43 PF13429 TPR_15: Tetratricopep 99.4 8.1E-13 1.7E-17 129.4 12.0 223 510-752 48-277 (280)
44 TIGR00540 hemY_coli hemY prote 99.4 9.5E-11 2.1E-15 120.9 27.8 254 481-752 128-399 (409)
45 KOG1915 Cell cycle control pro 99.4 2.6E-08 5.7E-13 95.6 40.7 384 186-648 119-535 (677)
46 PRK10747 putative protoheme IX 99.4 1.4E-10 3.1E-15 118.8 27.8 283 416-753 97-391 (398)
47 TIGR00540 hemY_coli hemY prote 99.4 1.7E-10 3.8E-15 118.9 28.6 279 484-781 97-394 (409)
48 KOG3785 Uncharacterized conser 99.4 2.1E-09 4.5E-14 99.0 31.3 319 411-755 159-493 (557)
49 KOG1126 DNA-binding cell divis 99.4 1.2E-11 2.6E-16 123.6 17.2 157 619-780 420-580 (638)
50 KOG1915 Cell cycle control pro 99.4 2.8E-09 6E-14 102.1 30.5 378 380-780 85-494 (677)
51 KOG1155 Anaphase-promoting com 99.4 4.2E-09 9.1E-14 100.8 31.5 324 398-780 159-489 (559)
52 KOG1173 Anaphase-promoting com 99.4 5E-09 1.1E-13 103.0 32.6 253 505-778 243-510 (611)
53 KOG0547 Translocase of outer m 99.3 1.9E-09 4.1E-14 103.7 27.0 214 445-717 336-563 (606)
54 COG3071 HemY Uncharacterized e 99.3 4E-09 8.7E-14 99.4 28.6 251 479-753 126-391 (400)
55 KOG3616 Selective LIM binding 99.3 1.3E-06 2.7E-11 88.8 47.6 129 627-765 1220-1368(1636)
56 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3E-13 99.9 32.0 273 434-766 243-532 (611)
57 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.7E-14 110.8 25.7 159 622-780 285-473 (508)
58 KOG1174 Anaphase-promoting com 99.3 3.9E-08 8.4E-13 92.8 31.4 144 622-769 370-517 (564)
59 KOG2047 mRNA splicing factor [ 99.3 3.2E-06 6.8E-11 85.0 47.7 546 108-708 102-711 (835)
60 KOG3616 Selective LIM binding 99.3 9.2E-07 2E-11 89.7 42.5 156 414-593 717-874 (1636)
61 COG3071 HemY Uncharacterized e 99.3 1.4E-08 3E-13 95.8 27.6 276 416-717 97-387 (400)
62 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.8E-16 82.6 6.2 50 240-290 1-50 (50)
63 KOG4162 Predicted calmodulin-b 99.2 4.3E-07 9.3E-12 93.2 39.8 374 398-778 318-775 (799)
64 TIGR02521 type_IV_pilW type IV 99.2 6.8E-10 1.5E-14 106.4 19.4 156 622-779 67-225 (234)
65 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.3E-16 81.9 6.5 50 618-667 1-50 (50)
66 KOG2047 mRNA splicing factor [ 99.2 6.5E-06 1.4E-10 82.8 47.7 530 211-780 81-717 (835)
67 KOG2376 Signal recognition par 99.2 8.1E-08 1.8E-12 95.2 31.0 342 414-770 90-505 (652)
68 COG2956 Predicted N-acetylgluc 99.2 1.6E-08 3.4E-13 92.4 23.9 261 417-700 49-324 (389)
69 KOG1156 N-terminal acetyltrans 99.2 3.1E-07 6.8E-12 92.2 35.0 443 254-778 19-503 (700)
70 COG2956 Predicted N-acetylgluc 99.2 2.1E-08 4.6E-13 91.6 23.8 281 448-750 48-345 (389)
71 COG3063 PilF Tfp pilus assembl 99.1 2E-09 4.3E-14 93.6 15.1 154 622-780 37-196 (250)
72 KOG3617 WD40 and TPR repeat-co 99.1 3.5E-06 7.6E-11 86.9 39.1 270 28-341 716-995 (1416)
73 KOG3785 Uncharacterized conser 99.1 7.7E-06 1.7E-10 76.0 37.2 190 409-602 291-494 (557)
74 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.5E-13 96.9 20.7 196 539-754 33-234 (234)
75 KOG1129 TPR repeat-containing 99.1 3.1E-09 6.7E-14 96.8 14.2 242 505-765 222-471 (478)
76 KOG1129 TPR repeat-containing 99.1 4.3E-09 9.2E-14 95.9 14.4 220 541-780 227-452 (478)
77 KOG3617 WD40 and TPR repeat-co 99.0 2E-05 4.4E-10 81.5 40.9 229 16-269 737-994 (1416)
78 PRK12370 invasion protein regu 99.0 1.5E-08 3.3E-13 108.8 20.1 202 553-778 277-494 (553)
79 PF12569 NARP1: NMDA receptor- 99.0 3.4E-06 7.5E-11 87.4 36.2 122 438-563 197-331 (517)
80 KOG4162 Predicted calmodulin-b 99.0 6.8E-06 1.5E-10 84.7 37.1 132 622-758 652-789 (799)
81 KOG0985 Vesicle coat protein c 99.0 6.6E-05 1.4E-09 79.7 54.9 681 37-777 393-1240(1666)
82 PRK11189 lipoprotein NlpI; Pro 99.0 3E-08 6.6E-13 97.1 19.7 182 574-781 69-260 (296)
83 KOG1174 Anaphase-promoting com 99.0 6.3E-06 1.4E-10 78.3 33.4 273 485-779 210-493 (564)
84 COG3063 PilF Tfp pilus assembl 99.0 9.9E-08 2.1E-12 83.3 19.9 198 543-760 41-244 (250)
85 PRK12370 invasion protein regu 99.0 3E-08 6.4E-13 106.6 20.8 201 553-776 320-526 (553)
86 KOG1840 Kinesin light chain [C 99.0 1.1E-07 2.4E-12 96.9 22.3 128 623-750 328-477 (508)
87 KOG2376 Signal recognition par 99.0 7E-06 1.5E-10 81.9 33.0 178 520-718 321-518 (652)
88 PRK11189 lipoprotein NlpI; Pro 98.9 2E-07 4.3E-12 91.4 22.6 207 543-773 70-287 (296)
89 KOG1156 N-terminal acetyltrans 98.9 1.3E-05 2.8E-10 81.0 33.8 353 402-780 74-462 (700)
90 PF12569 NARP1: NMDA receptor- 98.9 1.1E-06 2.5E-11 90.9 26.3 286 443-780 12-328 (517)
91 KOG0548 Molecular co-chaperone 98.9 1.2E-06 2.7E-11 86.3 24.0 132 634-770 338-473 (539)
92 KOG1127 TPR repeat-containing 98.8 0.00023 5.1E-09 75.8 39.7 158 109-270 493-658 (1238)
93 PF12854 PPR_1: PPR repeat 98.8 4.5E-09 9.7E-14 63.1 2.6 34 1-34 1-34 (34)
94 PF04733 Coatomer_E: Coatomer 98.8 3E-07 6.5E-12 88.5 16.2 235 511-776 40-285 (290)
95 KOG1125 TPR repeat-containing 98.8 1.7E-07 3.7E-12 93.0 14.2 209 516-779 295-520 (579)
96 TIGR03302 OM_YfiO outer membra 98.8 2.9E-07 6.4E-12 87.7 15.8 158 621-780 34-226 (235)
97 KOG1127 TPR repeat-containing 98.7 5.9E-05 1.3E-09 80.1 32.4 578 141-770 494-1122(1238)
98 cd05804 StaR_like StaR_like; a 98.7 2.3E-05 5E-10 80.3 28.8 156 622-780 150-330 (355)
99 PF04733 Coatomer_E: Coatomer 98.7 3.6E-06 7.8E-11 81.1 20.2 253 413-724 11-270 (290)
100 PRK15359 type III secretion sy 98.7 3.6E-07 7.8E-12 78.3 11.8 124 640-770 13-139 (144)
101 PRK10370 formate-dependent nit 98.6 9.5E-07 2.1E-11 80.2 13.8 139 627-780 23-167 (198)
102 KOG0548 Molecular co-chaperone 98.6 2.6E-05 5.5E-10 77.3 23.8 219 539-780 226-449 (539)
103 KOG4340 Uncharacterized conser 98.6 0.0002 4.4E-09 65.3 26.7 87 415-503 124-210 (459)
104 KOG0624 dsRNA-activated protei 98.5 0.0002 4.4E-09 66.7 26.4 90 408-501 43-136 (504)
105 PRK04841 transcriptional regul 98.5 0.00015 3.1E-09 84.8 32.7 356 410-780 348-754 (903)
106 COG5010 TadD Flp pilus assembl 98.5 3.1E-06 6.8E-11 76.0 13.6 150 627-779 73-224 (257)
107 KOG4340 Uncharacterized conser 98.5 6.3E-05 1.4E-09 68.5 21.7 304 402-717 9-336 (459)
108 PRK15359 type III secretion sy 98.5 7.2E-07 1.6E-11 76.4 9.3 100 676-780 14-115 (144)
109 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 4E-12 56.1 3.9 33 649-681 1-33 (34)
110 cd05804 StaR_like StaR_like; a 98.4 0.00027 5.8E-09 72.4 27.9 188 406-598 9-215 (355)
111 PRK15179 Vi polysaccharide bio 98.4 1.4E-05 3.1E-10 86.3 18.5 130 620-754 86-219 (694)
112 COG5010 TadD Flp pilus assembl 98.4 2E-05 4.4E-10 70.9 16.3 126 619-748 99-227 (257)
113 KOG1070 rRNA processing protei 98.4 3.1E-05 6.8E-10 85.0 20.3 214 539-774 1460-1688(1710)
114 PRK10370 formate-dependent nit 98.4 2.8E-05 6E-10 70.7 17.4 127 633-763 52-184 (198)
115 KOG1128 Uncharacterized conser 98.4 2.7E-05 5.8E-10 80.0 18.4 232 501-765 393-631 (777)
116 PLN02789 farnesyltranstransfer 98.4 0.00011 2.4E-09 71.9 22.3 207 542-770 42-268 (320)
117 TIGR03302 OM_YfiO outer membra 98.4 2.3E-05 4.9E-10 74.7 17.1 60 696-755 171-235 (235)
118 KOG1914 mRNA cleavage and poly 98.4 0.004 8.6E-08 62.3 35.2 153 538-709 367-528 (656)
119 KOG1128 Uncharacterized conser 98.4 2.8E-05 6E-10 79.9 17.9 218 398-648 393-615 (777)
120 KOG0624 dsRNA-activated protei 98.3 0.0003 6.6E-09 65.6 22.5 290 441-778 44-362 (504)
121 PRK15363 pathogenicity island 98.3 6.6E-06 1.4E-10 68.8 10.6 89 692-780 36-126 (157)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 8.3E-06 1.8E-10 81.1 12.5 119 657-780 171-291 (395)
123 COG4783 Putative Zn-dependent 98.3 2.7E-05 5.9E-10 76.4 15.4 112 664-778 315-429 (484)
124 TIGR02552 LcrH_SycD type III s 98.3 3.4E-06 7.4E-11 72.2 8.5 116 641-761 4-123 (135)
125 KOG1070 rRNA processing protei 98.3 5.5E-05 1.2E-09 83.2 18.7 200 564-780 1452-1657(1710)
126 PRK04841 transcriptional regul 98.3 0.0022 4.8E-08 75.1 33.9 325 415-755 386-763 (903)
127 KOG1125 TPR repeat-containing 98.3 3.6E-05 7.7E-10 77.0 15.7 119 622-745 432-564 (579)
128 PF07079 DUF1347: Protein of u 98.2 0.0063 1.4E-07 59.6 30.1 113 664-780 388-518 (549)
129 KOG3081 Vesicle coat complex C 98.2 0.00042 9.1E-09 62.5 19.6 125 628-757 145-276 (299)
130 COG4783 Putative Zn-dependent 98.2 0.0007 1.5E-08 66.9 22.6 113 622-753 342-455 (484)
131 KOG3081 Vesicle coat complex C 98.2 0.0005 1.1E-08 62.1 19.5 141 627-777 115-261 (299)
132 PF09976 TPR_21: Tetratricopep 98.2 2.7E-05 5.8E-10 67.2 11.3 112 668-780 24-141 (145)
133 PRK15179 Vi polysaccharide bio 98.1 5.6E-05 1.2E-09 81.9 14.8 127 651-780 82-211 (694)
134 KOG3060 Uncharacterized conser 98.1 0.00011 2.4E-09 65.6 13.8 74 703-776 98-173 (289)
135 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 1E-10 51.3 4.0 35 140-174 1-35 (35)
136 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.7E-09 63.0 13.9 126 622-750 14-145 (145)
137 TIGR02552 LcrH_SycD type III s 98.1 6.3E-05 1.4E-09 64.3 12.1 87 693-779 19-107 (135)
138 TIGR00756 PPR pentatricopeptid 98.1 7.7E-06 1.7E-10 50.3 4.3 33 622-654 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 98.0 7.4E-06 1.6E-10 49.8 3.5 33 140-172 2-34 (34)
140 KOG3060 Uncharacterized conser 98.0 0.00058 1.3E-08 61.2 16.1 145 622-771 54-202 (289)
141 KOG1914 mRNA cleavage and poly 98.0 0.025 5.4E-07 56.9 34.1 145 553-717 347-498 (656)
142 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 48.6 4.2 33 621-653 2-34 (34)
143 PRK14720 transcript cleavage f 97.9 0.00026 5.5E-09 77.6 16.2 194 537-781 31-247 (906)
144 PLN02789 farnesyltranstransfer 97.9 0.0011 2.5E-08 64.9 19.3 171 578-770 46-230 (320)
145 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00011 2.3E-09 61.2 10.4 105 657-761 4-114 (119)
146 PRK14720 transcript cleavage f 97.9 0.0011 2.4E-08 72.7 20.3 146 622-769 118-269 (906)
147 PF12895 Apc3: Anaphase-promot 97.9 5.2E-06 1.1E-10 63.6 1.8 54 726-780 28-81 (84)
148 KOG2053 Mitochondrial inherita 97.9 0.062 1.3E-06 57.7 44.6 465 85-596 21-534 (932)
149 KOG0553 TPR repeat-containing 97.8 9.7E-05 2.1E-09 68.0 9.2 107 665-774 91-200 (304)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 9.4E-05 2E-09 61.6 8.4 89 692-780 3-99 (119)
151 cd00189 TPR Tetratricopeptide 97.8 7.4E-05 1.6E-09 59.3 7.2 82 697-778 6-89 (100)
152 PF13432 TPR_16: Tetratricopep 97.8 3.2E-05 7E-10 55.8 3.9 59 698-756 4-64 (65)
153 COG3898 Uncharacterized membra 97.7 0.024 5.3E-07 54.5 23.0 281 474-779 85-385 (531)
154 PF13431 TPR_17: Tetratricopep 97.7 3.1E-05 6.6E-10 46.5 2.7 33 746-778 2-34 (34)
155 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0013 2.8E-08 65.8 15.5 121 574-718 174-295 (395)
156 PLN03088 SGT1, suppressor of 97.7 0.00033 7.2E-09 70.5 11.5 103 664-769 11-116 (356)
157 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 45.3 3.1 31 140-170 1-31 (31)
158 PF13414 TPR_11: TPR repeat; P 97.7 3.4E-05 7.4E-10 56.5 3.1 59 722-780 2-61 (69)
159 PRK10153 DNA-binding transcrip 97.7 0.00074 1.6E-08 71.0 13.8 137 621-759 338-489 (517)
160 PF14559 TPR_19: Tetratricopep 97.6 4.5E-05 9.7E-10 55.7 3.2 64 702-765 2-67 (68)
161 PF08579 RPM2: Mitochondrial r 97.6 0.00025 5.4E-09 54.8 7.0 80 41-120 28-116 (120)
162 PF12895 Apc3: Anaphase-promot 97.6 7.7E-05 1.7E-09 57.1 4.5 79 633-715 2-82 (84)
163 PRK02603 photosystem I assembl 97.6 0.0011 2.4E-08 59.2 12.3 113 657-772 37-166 (172)
164 PF13432 TPR_16: Tetratricopep 97.6 0.0001 2.2E-09 53.1 4.5 52 729-780 3-54 (65)
165 PF01535 PPR: PPR repeat; Int 97.6 9.1E-05 2E-09 43.8 3.5 30 622-651 2-31 (31)
166 PLN03088 SGT1, suppressor of 97.6 0.00022 4.7E-09 71.8 8.3 84 697-780 8-93 (356)
167 PF04840 Vps16_C: Vps16, C-ter 97.6 0.099 2.1E-06 51.3 28.0 109 622-748 179-287 (319)
168 CHL00033 ycf3 photosystem I as 97.6 0.00024 5.1E-09 63.3 7.3 89 691-779 35-135 (168)
169 KOG0553 TPR repeat-containing 97.5 0.0002 4.3E-09 66.1 6.3 84 698-781 88-173 (304)
170 PRK15331 chaperone protein Sic 97.5 0.00084 1.8E-08 56.7 9.4 84 696-779 42-127 (165)
171 PRK02603 photosystem I assembl 97.5 0.00031 6.8E-09 62.7 7.5 83 691-773 35-122 (172)
172 COG3898 Uncharacterized membra 97.5 0.11 2.4E-06 50.2 25.3 241 447-717 132-389 (531)
173 PF14559 TPR_19: Tetratricopep 97.5 9.8E-05 2.1E-09 53.9 3.1 59 667-728 3-63 (68)
174 PF14938 SNAP: Soluble NSF att 97.5 0.0086 1.9E-07 58.4 17.4 92 664-755 123-228 (282)
175 cd00189 TPR Tetratricopeptide 97.5 0.00075 1.6E-08 53.3 8.6 90 662-754 7-99 (100)
176 PF12688 TPR_5: Tetratrico pep 97.4 0.0012 2.7E-08 53.5 9.0 90 661-751 7-103 (120)
177 PF10037 MRP-S27: Mitochondria 97.4 0.0022 4.8E-08 64.4 12.6 122 397-519 60-186 (429)
178 COG4235 Cytochrome c biogenesi 97.4 0.0013 2.9E-08 61.2 9.9 99 654-755 155-259 (287)
179 KOG1538 Uncharacterized conser 97.4 0.026 5.7E-07 57.8 19.4 86 657-752 749-846 (1081)
180 PF05843 Suf: Suppressor of fo 97.4 0.0032 7E-08 61.0 13.1 135 622-759 3-143 (280)
181 PF14938 SNAP: Soluble NSF att 97.4 0.063 1.4E-06 52.4 22.2 93 622-717 157-263 (282)
182 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.4E-08 49.5 9.5 80 245-325 28-116 (120)
183 PF06239 ECSIT: Evolutionarily 97.3 0.0019 4.1E-08 57.1 9.7 104 565-670 43-153 (228)
184 PF10037 MRP-S27: Mitochondria 97.3 0.0037 8.1E-08 62.9 12.6 103 568-684 65-167 (429)
185 PF13371 TPR_9: Tetratricopept 97.3 0.00043 9.2E-09 51.3 4.7 65 699-763 3-69 (73)
186 COG4700 Uncharacterized protei 97.3 0.022 4.8E-07 48.7 14.8 152 595-750 65-220 (251)
187 CHL00033 ycf3 photosystem I as 97.2 0.0036 7.9E-08 55.6 11.0 102 656-757 36-154 (168)
188 PF06239 ECSIT: Evolutionarily 97.2 0.0012 2.5E-08 58.3 7.3 100 24-123 31-153 (228)
189 PRK10803 tol-pal system protei 97.2 0.0013 2.8E-08 62.4 8.1 105 656-760 144-254 (263)
190 KOG0550 Molecular chaperone (D 97.2 0.004 8.6E-08 60.1 11.1 146 628-779 177-343 (486)
191 PRK10153 DNA-binding transcrip 97.2 0.0044 9.5E-08 65.3 12.7 126 651-780 333-476 (517)
192 KOG2053 Mitochondrial inherita 97.2 0.51 1.1E-05 51.1 39.3 224 187-465 22-256 (932)
193 PRK10803 tol-pal system protei 97.1 0.0056 1.2E-07 58.1 11.6 101 622-724 145-251 (263)
194 PF13428 TPR_14: Tetratricopep 97.1 0.00069 1.5E-08 43.8 3.8 42 724-765 2-43 (44)
195 PRK10866 outer membrane biogen 97.1 0.011 2.4E-07 55.7 13.5 152 627-780 39-235 (243)
196 COG4700 Uncharacterized protei 97.1 0.06 1.3E-06 46.1 15.6 125 651-778 85-214 (251)
197 PF13371 TPR_9: Tetratricopept 97.0 0.002 4.4E-08 47.6 5.9 47 733-779 5-51 (73)
198 PF12688 TPR_5: Tetratrico pep 97.0 0.017 3.7E-07 47.0 11.2 91 626-716 7-100 (120)
199 KOG2041 WD40 repeat protein [G 96.9 0.62 1.3E-05 48.8 24.2 79 692-770 1022-1107(1189)
200 PF13414 TPR_11: TPR repeat; P 96.9 0.00096 2.1E-08 48.7 3.6 63 692-754 4-69 (69)
201 PF07079 DUF1347: Protein of u 96.9 0.52 1.1E-05 46.8 37.0 57 667-728 474-530 (549)
202 PRK15363 pathogenicity island 96.9 0.0068 1.5E-07 51.1 8.7 94 657-753 37-133 (157)
203 KOG1538 Uncharacterized conser 96.9 0.13 2.9E-06 52.9 19.0 54 628-683 781-845 (1081)
204 PRK10866 outer membrane biogen 96.9 0.17 3.6E-06 47.8 18.7 172 409-596 38-239 (243)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.68 1.5E-05 45.9 27.1 136 620-759 397-538 (660)
206 PF04184 ST7: ST7 protein; In 96.7 0.091 2E-06 52.8 16.0 186 548-761 179-384 (539)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0036 7.8E-08 62.3 6.0 66 688-753 71-142 (453)
208 KOG1130 Predicted G-alpha GTPa 96.6 0.021 4.5E-07 55.2 10.6 122 657-778 197-336 (639)
209 PF13525 YfiO: Outer membrane 96.6 0.047 1E-06 50.1 12.7 153 626-778 11-199 (203)
210 KOG2280 Vacuolar assembly/sort 96.6 1.4 3E-05 46.9 31.0 136 362-498 426-573 (829)
211 PF05843 Suf: Suppressor of fo 96.6 0.0083 1.8E-07 58.2 7.9 123 656-780 2-130 (280)
212 KOG0550 Molecular chaperone (D 96.5 0.2 4.3E-06 49.0 16.5 118 632-755 215-353 (486)
213 PF04840 Vps16_C: Vps16, C-ter 96.4 1.1 2.4E-05 44.2 29.1 101 410-528 184-284 (319)
214 COG4235 Cytochrome c biogenesi 96.4 0.067 1.5E-06 50.2 12.4 93 688-780 152-250 (287)
215 COG1729 Uncharacterized protei 96.4 0.02 4.3E-07 53.0 8.6 105 657-762 144-254 (262)
216 COG1729 Uncharacterized protei 96.3 0.033 7.1E-07 51.5 9.4 94 623-717 145-241 (262)
217 KOG4555 TPR repeat-containing 96.3 0.022 4.7E-07 45.4 7.0 94 664-760 52-152 (175)
218 KOG2041 WD40 repeat protein [G 96.2 2 4.3E-05 45.3 25.2 47 658-704 1024-1070(1189)
219 PF13525 YfiO: Outer membrane 96.2 0.062 1.3E-06 49.3 11.4 118 661-778 11-162 (203)
220 KOG1258 mRNA processing protei 96.2 2 4.2E-05 44.8 31.7 184 568-771 296-489 (577)
221 PF13281 DUF4071: Domain of un 96.2 0.49 1.1E-05 47.0 17.5 123 633-758 195-340 (374)
222 PF12921 ATP13: Mitochondrial 96.1 0.063 1.4E-06 44.2 9.3 80 620-699 2-96 (126)
223 PF13424 TPR_12: Tetratricopep 96.0 0.0056 1.2E-07 45.9 3.0 26 725-750 48-73 (78)
224 KOG0543 FKBP-type peptidyl-pro 96.0 0.042 9.1E-07 53.6 9.3 76 693-768 259-336 (397)
225 KOG1585 Protein required for f 96.0 0.26 5.6E-06 44.5 13.3 24 508-531 33-56 (308)
226 PF13512 TPR_18: Tetratricopep 96.0 0.051 1.1E-06 45.1 8.5 74 697-770 16-97 (142)
227 PF03704 BTAD: Bacterial trans 96.0 0.047 1E-06 47.1 9.0 55 726-780 65-119 (146)
228 PF13512 TPR_18: Tetratricopep 95.9 0.17 3.6E-06 42.1 11.1 94 666-760 21-136 (142)
229 COG3118 Thioredoxin domain-con 95.9 0.22 4.7E-06 46.7 13.0 112 664-779 143-258 (304)
230 KOG2280 Vacuolar assembly/sort 95.9 3 6.5E-05 44.6 27.3 135 66-201 425-573 (829)
231 PF13424 TPR_12: Tetratricopep 95.9 0.017 3.7E-07 43.3 5.1 60 657-716 7-71 (78)
232 PRK11906 transcriptional regul 95.9 0.33 7.1E-06 49.0 15.0 154 624-780 257-430 (458)
233 KOG2114 Vacuolar assembly/sort 95.9 3.4 7.4E-05 44.8 23.6 119 214-341 337-459 (933)
234 KOG3941 Intermediate in Toll s 95.8 0.12 2.7E-06 47.5 10.7 104 565-670 63-173 (406)
235 PRK11619 lytic murein transgly 95.7 4.2 9.1E-05 44.7 27.1 115 633-750 254-373 (644)
236 KOG2796 Uncharacterized conser 95.6 0.43 9.4E-06 43.6 13.2 136 622-758 179-321 (366)
237 COG0457 NrfG FOG: TPR repeat [ 95.6 1.8 3.9E-05 41.0 19.7 214 520-755 37-268 (291)
238 PRK11906 transcriptional regul 95.5 0.094 2E-06 52.7 9.8 110 670-779 273-394 (458)
239 PF09205 DUF1955: Domain of un 95.4 0.37 8.1E-06 38.9 10.6 131 631-780 13-143 (161)
240 COG4649 Uncharacterized protei 95.3 1.4 3E-05 37.7 14.3 129 630-762 68-205 (221)
241 KOG1920 IkappaB kinase complex 95.2 7.3 0.00016 44.3 25.5 153 520-717 894-1052(1265)
242 KOG2796 Uncharacterized conser 95.2 0.78 1.7E-05 42.0 13.4 137 437-574 179-324 (366)
243 PF10300 DUF3808: Protein of u 95.2 0.58 1.3E-05 49.3 15.0 169 572-753 191-377 (468)
244 smart00299 CLH Clathrin heavy 95.2 1.4 3.1E-05 37.5 15.0 128 622-769 9-137 (140)
245 PF12921 ATP13: Mitochondrial 95.2 0.24 5.2E-06 40.8 9.5 77 403-479 2-96 (126)
246 KOG1941 Acetylcholine receptor 95.1 0.3 6.4E-06 46.8 11.1 156 622-777 85-266 (518)
247 PF03704 BTAD: Bacterial trans 95.1 0.13 2.9E-06 44.3 8.5 70 622-693 64-138 (146)
248 COG4105 ComL DNA uptake lipopr 94.8 3.4 7.3E-05 38.4 17.4 150 630-780 44-227 (254)
249 COG4785 NlpI Lipoprotein NlpI, 94.4 1.4 3.1E-05 39.2 12.6 150 622-781 101-261 (297)
250 PF09613 HrpB1_HrpK: Bacterial 94.4 1.6 3.5E-05 37.3 12.6 49 632-682 22-71 (160)
251 KOG3941 Intermediate in Toll s 94.4 0.15 3.3E-06 46.9 7.1 108 27-134 54-185 (406)
252 KOG0543 FKBP-type peptidyl-pro 94.4 0.34 7.4E-06 47.6 9.9 123 629-754 217-357 (397)
253 PF10300 DUF3808: Protein of u 94.3 1.1 2.5E-05 47.1 14.5 156 622-780 190-370 (468)
254 PF07719 TPR_2: Tetratricopept 94.3 0.067 1.5E-06 32.0 3.3 32 725-756 3-34 (34)
255 PRK09687 putative lyase; Provi 94.2 5.8 0.00013 38.5 22.5 240 28-288 27-277 (280)
256 KOG0890 Protein kinase of the 94.0 18 0.0004 44.7 24.1 128 406-543 1423-1552(2382)
257 KOG1585 Protein required for f 93.9 3.5 7.5E-05 37.7 14.2 89 467-563 23-117 (308)
258 PRK15331 chaperone protein Sic 93.9 0.87 1.9E-05 39.0 10.1 92 662-757 44-138 (165)
259 KOG1130 Predicted G-alpha GTPa 93.7 0.32 6.9E-06 47.5 8.1 90 691-780 195-298 (639)
260 PF00515 TPR_1: Tetratricopept 93.6 0.075 1.6E-06 31.8 2.6 33 724-756 2-34 (34)
261 PF13281 DUF4071: Domain of un 93.6 8.8 0.00019 38.5 19.0 77 404-481 142-227 (374)
262 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.29 6.3E-06 49.3 7.9 64 619-684 74-141 (453)
263 PF04053 Coatomer_WDAD: Coatom 93.5 3.1 6.7E-05 43.2 15.5 103 514-646 326-428 (443)
264 KOG2114 Vacuolar assembly/sort 93.3 7.7 0.00017 42.3 17.9 111 510-626 338-453 (933)
265 PF04053 Coatomer_WDAD: Coatom 93.3 2.9 6.4E-05 43.4 15.0 160 148-341 270-430 (443)
266 COG3118 Thioredoxin domain-con 93.3 1.5 3.3E-05 41.4 11.5 142 630-775 144-290 (304)
267 KOG4555 TPR repeat-containing 93.3 0.14 3.1E-06 41.0 4.2 82 697-778 49-136 (175)
268 COG2976 Uncharacterized protei 93.2 3.2 6.9E-05 36.6 12.4 130 623-757 57-193 (207)
269 smart00299 CLH Clathrin heavy 93.0 2.8 6E-05 35.7 12.4 124 574-734 12-136 (140)
270 KOG2610 Uncharacterized conser 93.0 3.5 7.5E-05 39.5 13.4 146 632-780 115-270 (491)
271 PF11207 DUF2989: Protein of u 92.6 1.8 4E-05 38.5 10.5 74 702-776 118-197 (203)
272 KOG1920 IkappaB kinase complex 92.6 23 0.00051 40.6 25.2 112 651-779 931-1048(1265)
273 PF13176 TPR_7: Tetratricopept 92.4 0.1 2.2E-06 31.7 1.9 22 759-780 1-22 (36)
274 KOG2610 Uncharacterized conser 92.1 1 2.2E-05 42.8 8.8 111 667-779 115-231 (491)
275 PF00637 Clathrin: Region in C 92.0 0.073 1.6E-06 45.7 1.3 84 79-165 13-96 (143)
276 PF02259 FAT: FAT domain; Int 91.8 17 0.00036 37.0 21.1 35 736-770 271-305 (352)
277 PF04184 ST7: ST7 protein; In 91.5 4 8.6E-05 41.7 12.6 75 695-769 263-342 (539)
278 TIGR02561 HrpB1_HrpK type III 91.4 0.55 1.2E-05 39.2 5.6 72 702-773 21-94 (153)
279 PF13176 TPR_7: Tetratricopept 91.2 0.27 5.9E-06 29.8 2.9 27 726-752 2-28 (36)
280 PF09613 HrpB1_HrpK: Bacterial 91.2 1.7 3.8E-05 37.1 8.5 112 653-768 5-121 (160)
281 COG5107 RNA14 Pre-mRNA 3'-end 91.1 19 0.0004 36.4 29.5 125 571-714 399-525 (660)
282 PF00637 Clathrin: Region in C 91.1 0.12 2.7E-06 44.3 1.8 87 42-135 11-97 (143)
283 PF08631 SPO22: Meiosis protei 90.9 16 0.00036 35.5 25.3 17 733-749 256-272 (278)
284 PF07721 TPR_4: Tetratricopept 90.7 0.3 6.5E-06 27.0 2.5 23 758-780 2-24 (26)
285 PF07035 Mic1: Colon cancer-as 90.2 8.5 0.00018 33.5 11.9 134 58-203 14-149 (167)
286 PF13181 TPR_8: Tetratricopept 89.8 0.43 9.4E-06 28.4 2.9 31 725-755 3-33 (34)
287 PF13929 mRNA_stabil: mRNA sta 89.8 17 0.00037 34.6 14.4 169 343-530 87-262 (292)
288 PF13428 TPR_14: Tetratricopep 89.7 0.77 1.7E-05 29.4 4.2 24 625-648 6-29 (44)
289 KOG1550 Extracellular protein 89.2 37 0.00081 37.0 19.3 49 451-499 228-277 (552)
290 PF10602 RPN7: 26S proteasome 89.0 5 0.00011 35.7 10.1 94 622-717 38-139 (177)
291 KOG1586 Protein required for f 88.9 18 0.0004 33.0 14.8 19 737-755 209-227 (288)
292 COG0457 NrfG FOG: TPR repeat [ 88.7 21 0.00045 33.4 25.2 191 507-717 60-262 (291)
293 PF13431 TPR_17: Tetratricopep 88.5 0.4 8.6E-06 28.6 2.0 25 687-711 8-33 (34)
294 PF08631 SPO22: Meiosis protei 88.1 27 0.00058 34.0 17.5 127 581-717 5-147 (278)
295 PF14853 Fis1_TPR_C: Fis1 C-te 87.8 1 2.2E-05 30.2 3.8 38 729-766 7-44 (53)
296 KOG4570 Uncharacterized conser 87.7 1.4 2.9E-05 41.7 5.8 102 1-103 58-165 (418)
297 PF13170 DUF4003: Protein of u 87.5 30 0.00065 33.9 15.9 93 555-662 121-224 (297)
298 PF13174 TPR_6: Tetratricopept 87.5 0.76 1.6E-05 27.0 2.9 30 727-756 4-33 (33)
299 PF09205 DUF1955: Domain of un 87.3 15 0.00032 30.1 12.8 63 539-601 88-152 (161)
300 PF07035 Mic1: Colon cancer-as 87.2 19 0.00042 31.3 13.2 38 94-131 15-52 (167)
301 KOG4234 TPR repeat-containing 86.8 3.9 8.4E-05 36.1 7.6 95 665-759 105-204 (271)
302 PF00515 TPR_1: Tetratricopept 86.7 1.4 3.1E-05 26.1 3.8 27 622-648 3-29 (34)
303 TIGR02561 HrpB1_HrpK type III 86.7 4.5 9.8E-05 34.0 7.7 84 652-738 4-93 (153)
304 KOG4279 Serine/threonine prote 86.4 14 0.0003 39.7 12.7 98 631-755 298-398 (1226)
305 KOG4234 TPR repeat-containing 86.2 1.4 3.1E-05 38.6 4.8 84 698-781 102-192 (271)
306 PF02259 FAT: FAT domain; Int 86.1 27 0.00059 35.4 15.4 60 692-751 147-212 (352)
307 KOG1464 COP9 signalosome, subu 86.1 29 0.00064 32.3 18.9 279 467-760 22-340 (440)
308 PRK15180 Vi polysaccharide bio 86.0 43 0.00094 34.2 26.6 89 668-759 711-813 (831)
309 PRK11619 lytic murein transgly 85.9 62 0.0013 35.9 36.3 58 623-681 315-372 (644)
310 KOG4570 Uncharacterized conser 85.1 4.3 9.4E-05 38.5 7.6 103 397-501 58-165 (418)
311 KOG4648 Uncharacterized conser 85.1 1.3 2.8E-05 42.3 4.3 109 661-776 103-214 (536)
312 KOG1941 Acetylcholine receptor 84.9 32 0.00068 33.8 13.2 163 509-682 86-273 (518)
313 COG3629 DnrI DNA-binding trans 84.5 6.7 0.00015 37.4 8.8 76 622-699 155-235 (280)
314 PF13170 DUF4003: Protein of u 83.8 33 0.00072 33.6 13.5 127 383-512 77-223 (297)
315 PF10602 RPN7: 26S proteasome 83.7 4.3 9.3E-05 36.1 6.9 96 656-752 37-142 (177)
316 PF10579 Rapsyn_N: Rapsyn N-te 83.7 1.6 3.4E-05 31.8 3.3 47 667-713 18-65 (80)
317 PF02284 COX5A: Cytochrome c o 83.1 10 0.00022 29.4 7.5 60 638-699 28-87 (108)
318 smart00028 TPR Tetratricopepti 83.0 2.3 5.1E-05 24.1 3.7 31 725-755 3-33 (34)
319 PF06957 COPI_C: Coatomer (COP 82.7 18 0.00038 37.0 11.4 44 714-757 289-334 (422)
320 COG3947 Response regulator con 82.4 47 0.001 31.7 13.2 141 636-778 149-334 (361)
321 PF13374 TPR_10: Tetratricopep 82.2 1.9 4.2E-05 26.9 3.2 27 725-751 4-30 (42)
322 PF10345 Cohesin_load: Cohesin 82.2 88 0.0019 34.7 33.6 87 255-341 152-253 (608)
323 PF07719 TPR_2: Tetratricopept 82.1 3 6.5E-05 24.5 3.8 26 623-648 4-29 (34)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 81.8 8.3 0.00018 29.5 6.5 68 296-363 25-94 (103)
325 PRK10941 hypothetical protein; 81.5 3.9 8.5E-05 39.1 6.1 75 692-766 182-258 (269)
326 KOG4648 Uncharacterized conser 81.2 4.9 0.00011 38.6 6.4 96 628-728 105-203 (536)
327 PF02284 COX5A: Cytochrome c o 81.2 6.2 0.00014 30.5 5.8 69 296-364 28-98 (108)
328 COG4105 ComL DNA uptake lipopr 81.0 49 0.0011 31.0 18.1 61 697-757 173-238 (254)
329 KOG4507 Uncharacterized conser 80.9 6.6 0.00014 40.8 7.7 129 636-768 589-721 (886)
330 PF11207 DUF2989: Protein of u 80.8 11 0.00024 33.7 8.2 76 635-711 121-198 (203)
331 KOG1586 Protein required for f 80.6 47 0.001 30.6 16.7 23 631-653 165-187 (288)
332 PF14561 TPR_20: Tetratricopep 80.3 2.2 4.7E-05 32.7 3.3 53 722-774 21-75 (90)
333 COG4649 Uncharacterized protei 79.3 42 0.00091 29.2 12.4 54 631-684 143-196 (221)
334 PF07721 TPR_4: Tetratricopept 79.2 3.3 7.1E-05 22.8 3.0 19 696-714 6-24 (26)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 78.9 15 0.00032 28.3 7.0 63 635-699 22-84 (103)
336 COG1747 Uncharacterized N-term 78.7 88 0.0019 32.6 17.3 157 539-717 68-231 (711)
337 PF10345 Cohesin_load: Cohesin 78.5 1.2E+02 0.0025 33.8 33.5 192 580-780 372-600 (608)
338 KOG1464 COP9 signalosome, subu 78.4 53 0.0012 30.7 11.8 154 624-777 69-251 (440)
339 COG5159 RPN6 26S proteasome re 78.2 10 0.00022 35.6 7.3 31 626-656 9-39 (421)
340 PF04190 DUF410: Protein of un 78.1 67 0.0014 30.8 13.5 104 19-133 2-115 (260)
341 COG3629 DnrI DNA-binding trans 78.0 5.1 0.00011 38.2 5.6 62 691-752 153-216 (280)
342 KOG3364 Membrane protein invol 77.5 31 0.00068 28.5 8.9 75 688-762 29-110 (149)
343 KOG4642 Chaperone-dependent E3 77.4 22 0.00048 32.7 9.0 108 632-744 22-138 (284)
344 KOG0890 Protein kinase of the 77.1 2.2E+02 0.0048 36.3 23.0 156 81-248 1391-1552(2382)
345 TIGR02508 type_III_yscG type I 76.8 9.9 0.00021 29.3 5.6 79 88-169 20-98 (115)
346 KOG4642 Chaperone-dependent E3 76.2 5.5 0.00012 36.3 5.0 86 664-752 19-107 (284)
347 KOG0292 Vesicle coat complex C 76.1 1.4E+02 0.003 33.5 21.2 67 713-779 1072-1140(1202)
348 PF13934 ELYS: Nuclear pore co 75.9 35 0.00075 31.9 10.5 105 623-737 79-186 (226)
349 COG1747 Uncharacterized N-term 75.9 1.1E+02 0.0023 32.0 19.8 66 634-701 183-249 (711)
350 KOG2063 Vacuolar assembly/sort 75.9 1.5E+02 0.0033 33.9 24.3 60 365-433 475-534 (877)
351 KOG0545 Aryl-hydrocarbon recep 75.7 11 0.00023 34.6 6.6 98 662-759 185-300 (329)
352 KOG2066 Vacuolar assembly/sort 75.6 1.3E+02 0.0029 33.1 28.1 28 510-537 509-536 (846)
353 KOG3824 Huntingtin interacting 74.8 6.3 0.00014 37.3 5.1 59 703-761 128-188 (472)
354 TIGR02508 type_III_yscG type I 74.3 39 0.00084 26.2 8.7 67 213-283 41-107 (115)
355 KOG1308 Hsp70-interacting prot 74.2 1.5 3.3E-05 42.1 1.1 88 665-755 124-214 (377)
356 PF13181 TPR_8: Tetratricopept 73.8 5.5 0.00012 23.4 3.2 27 622-648 3-29 (34)
357 PF13374 TPR_10: Tetratricopep 73.4 7.3 0.00016 24.2 4.0 27 622-648 4-30 (42)
358 PF09670 Cas_Cas02710: CRISPR- 72.9 29 0.00063 35.5 10.0 54 630-684 141-198 (379)
359 smart00386 HAT HAT (Half-A-TPR 72.1 6.5 0.00014 22.6 3.3 30 737-766 1-30 (33)
360 COG4455 ImpE Protein of avirul 71.6 63 0.0014 29.4 10.1 124 622-758 3-140 (273)
361 PF04097 Nic96: Nup93/Nic96; 71.6 1.7E+02 0.0037 32.5 25.4 48 242-292 112-159 (613)
362 KOG3807 Predicted membrane pro 71.5 1E+02 0.0022 29.9 14.5 105 658-762 278-401 (556)
363 PF13174 TPR_6: Tetratricopept 71.3 7.9 0.00017 22.4 3.5 24 661-684 6-29 (33)
364 KOG1258 mRNA processing protei 70.8 1.5E+02 0.0033 31.6 29.4 97 241-341 296-394 (577)
365 PRK15180 Vi polysaccharide bio 70.6 25 0.00054 35.8 8.3 124 631-758 300-426 (831)
366 KOG2063 Vacuolar assembly/sort 70.5 1.7E+02 0.0036 33.5 15.5 124 40-185 506-637 (877)
367 KOG0276 Vesicle coat complex C 70.3 77 0.0017 33.7 11.9 100 413-531 647-746 (794)
368 KOG2168 Cullins [Cell cycle co 70.2 1.9E+02 0.0042 32.5 20.3 36 443-481 476-511 (835)
369 PF13762 MNE1: Mitochondrial s 70.0 68 0.0015 27.2 10.6 78 213-291 41-128 (145)
370 PF13762 MNE1: Mitochondrial s 70.0 41 0.00089 28.5 8.4 85 244-328 41-130 (145)
371 PF10579 Rapsyn_N: Rapsyn N-te 69.9 5.2 0.00011 29.3 2.7 45 734-778 17-64 (80)
372 KOG0276 Vesicle coat complex C 69.5 72 0.0016 33.9 11.5 96 223-341 598-694 (794)
373 KOG2066 Vacuolar assembly/sort 69.5 1.9E+02 0.0041 32.1 23.9 25 317-341 509-533 (846)
374 COG0790 FOG: TPR repeat, SEL1 69.5 1E+02 0.0022 30.3 12.9 133 632-771 89-236 (292)
375 PF07575 Nucleopor_Nup85: Nup8 69.2 1.7E+02 0.0037 32.2 15.5 26 6-32 148-173 (566)
376 COG4785 NlpI Lipoprotein NlpI, 68.9 93 0.002 28.4 13.2 31 538-568 100-131 (297)
377 PHA02875 ankyrin repeat protei 68.3 1.3E+02 0.0028 31.5 14.1 209 15-240 7-228 (413)
378 PF07163 Pex26: Pex26 protein; 67.8 53 0.0011 31.2 9.3 86 627-715 90-182 (309)
379 COG4455 ImpE Protein of avirul 67.5 36 0.00078 30.9 7.8 77 142-219 4-80 (273)
380 PF10366 Vps39_1: Vacuolar sor 67.4 19 0.00041 28.8 5.8 61 706-772 28-94 (108)
381 PF13929 mRNA_stabil: mRNA sta 67.0 1.2E+02 0.0027 29.1 13.8 115 224-338 141-263 (292)
382 COG4976 Predicted methyltransf 67.0 9 0.0002 34.7 4.2 59 700-758 4-64 (287)
383 COG2976 Uncharacterized protei 66.4 99 0.0021 27.7 11.9 57 216-272 131-189 (207)
384 PF04097 Nic96: Nup93/Nic96; 65.1 2.3E+02 0.005 31.5 27.5 216 113-344 116-358 (613)
385 PF04910 Tcf25: Transcriptiona 64.0 88 0.0019 31.8 11.2 39 730-768 110-149 (360)
386 PRK09687 putative lyase; Provi 63.9 1.5E+02 0.0032 28.9 27.0 68 624-701 210-277 (280)
387 PF11846 DUF3366: Domain of un 62.9 22 0.00048 32.3 6.3 32 686-717 139-170 (193)
388 KOG0376 Serine-threonine phosp 62.7 4.7 0.0001 40.9 1.9 112 662-776 11-127 (476)
389 PRK12798 chemotaxis protein; R 60.7 2E+02 0.0044 29.4 19.1 134 632-768 160-301 (421)
390 PF09477 Type_III_YscG: Bacter 60.6 31 0.00068 27.1 5.5 81 86-169 19-99 (116)
391 TIGR03504 FimV_Cterm FimV C-te 60.4 19 0.00041 23.1 3.6 25 626-650 5-29 (44)
392 KOG4521 Nuclear pore complex, 59.5 2.2E+02 0.0049 33.2 13.6 149 628-779 928-1124(1480)
393 TIGR03504 FimV_Cterm FimV C-te 58.9 18 0.00039 23.2 3.4 24 728-751 4-27 (44)
394 cd08819 CARD_MDA5_2 Caspase ac 58.9 71 0.0015 24.2 6.8 65 491-557 22-86 (88)
395 PF07163 Pex26: Pex26 protein; 58.4 1.1E+02 0.0023 29.3 9.4 87 544-643 90-181 (309)
396 PRK10941 hypothetical protein; 58.2 55 0.0012 31.4 8.1 75 657-734 183-262 (269)
397 PF12862 Apc5: Anaphase-promot 57.0 15 0.00032 28.5 3.5 47 734-780 9-64 (94)
398 PF06552 TOM20_plant: Plant sp 56.7 29 0.00063 30.5 5.3 71 672-751 52-135 (186)
399 COG0735 Fur Fe2+/Zn2+ uptake r 56.7 49 0.0011 28.3 6.8 65 59-124 7-71 (145)
400 PHA02875 ankyrin repeat protei 56.3 2.6E+02 0.0055 29.2 17.6 80 47-134 8-91 (413)
401 PRK13800 putative oxidoreducta 56.3 4E+02 0.0086 31.4 21.0 257 25-306 622-880 (897)
402 PF09986 DUF2225: Uncharacteri 56.1 30 0.00064 32.0 5.8 55 725-779 120-187 (214)
403 PF06552 TOM20_plant: Plant sp 55.2 24 0.00053 30.9 4.7 49 718-766 63-123 (186)
404 KOG3364 Membrane protein invol 54.2 1.3E+02 0.0028 25.2 8.1 71 652-724 29-105 (149)
405 KOG0376 Serine-threonine phosp 53.9 21 0.00047 36.5 4.8 103 629-736 13-118 (476)
406 KOG2581 26S proteasome regulat 53.9 2.2E+02 0.0048 28.8 11.2 128 630-757 136-281 (493)
407 PF11846 DUF3366: Domain of un 52.3 30 0.00066 31.4 5.3 37 718-754 139-175 (193)
408 KOG0551 Hsp90 co-chaperone CNS 52.3 34 0.00075 33.2 5.5 86 693-778 83-174 (390)
409 PF14689 SPOB_a: Sensor_kinase 51.8 30 0.00065 24.2 3.9 47 636-684 6-52 (62)
410 PRK12798 chemotaxis protein; R 51.5 2.9E+02 0.0062 28.4 14.7 143 632-777 124-277 (421)
411 PF07720 TPR_3: Tetratricopept 51.4 32 0.00068 20.9 3.4 29 727-755 5-35 (36)
412 KOG2422 Uncharacterized conser 51.0 1.6E+02 0.0035 31.3 10.3 116 19-134 250-404 (665)
413 PF12862 Apc5: Anaphase-promot 51.0 34 0.00073 26.5 4.6 25 729-753 47-71 (94)
414 COG2909 MalT ATP-dependent tra 50.6 4.3E+02 0.0093 30.1 22.3 218 547-779 425-681 (894)
415 PF11663 Toxin_YhaV: Toxin wit 50.2 17 0.00037 29.9 2.8 33 631-665 106-138 (140)
416 KOG4077 Cytochrome c oxidase, 50.1 80 0.0017 25.8 6.3 70 639-719 68-137 (149)
417 KOG4077 Cytochrome c oxidase, 49.1 90 0.002 25.5 6.5 44 298-341 69-112 (149)
418 PF09477 Type_III_YscG: Bacter 48.7 1.4E+02 0.0029 23.8 7.6 84 191-281 23-106 (116)
419 COG0735 Fur Fe2+/Zn2+ uptake r 48.6 87 0.0019 26.7 7.1 63 590-669 7-69 (145)
420 PF14863 Alkyl_sulf_dimr: Alky 48.2 50 0.0011 27.9 5.4 64 708-774 58-121 (141)
421 KOG0292 Vesicle coat complex C 47.9 1.8E+02 0.0039 32.7 10.5 159 542-753 625-783 (1202)
422 cd00280 TRFH Telomeric Repeat 47.1 87 0.0019 27.7 6.6 48 635-682 84-138 (200)
423 PF11848 DUF3368: Domain of un 46.4 48 0.001 21.7 4.0 34 149-182 12-45 (48)
424 KOG3824 Huntingtin interacting 46.1 25 0.00055 33.5 3.6 55 666-723 127-183 (472)
425 PF04910 Tcf25: Transcriptiona 46.0 3.4E+02 0.0074 27.6 14.1 91 577-684 111-222 (360)
426 KOG1498 26S proteasome regulat 45.6 3.4E+02 0.0074 27.5 17.7 55 663-717 179-238 (439)
427 PF11848 DUF3368: Domain of un 45.4 58 0.0013 21.3 4.3 31 50-80 14-44 (48)
428 TIGR02710 CRISPR-associated pr 45.3 1.5E+02 0.0032 30.2 9.0 55 626-680 136-196 (380)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 45.3 1.6E+02 0.0034 24.4 7.9 43 673-716 81-124 (126)
430 PRK10564 maltose regulon perip 44.8 50 0.0011 31.9 5.4 39 622-660 259-297 (303)
431 cd00280 TRFH Telomeric Repeat 44.3 74 0.0016 28.1 5.8 56 671-727 85-147 (200)
432 COG2912 Uncharacterized conser 43.2 39 0.00085 32.0 4.4 68 695-762 185-254 (269)
433 KOG4279 Serine/threonine prote 43.0 92 0.002 34.0 7.4 117 636-756 179-320 (1226)
434 PF10366 Vps39_1: Vacuolar sor 42.9 1.7E+02 0.0038 23.4 9.4 28 436-463 40-67 (108)
435 PF04190 DUF410: Protein of un 42.3 3.2E+02 0.0069 26.3 17.4 159 415-598 2-170 (260)
436 KOG4567 GTPase-activating prot 41.9 2.8E+02 0.0062 27.0 9.6 80 455-540 263-352 (370)
437 PF14853 Fis1_TPR_C: Fis1 C-te 41.6 89 0.0019 21.1 4.8 28 627-656 8-35 (53)
438 KOG2300 Uncharacterized conser 41.1 4.5E+02 0.0097 27.6 25.3 367 409-779 13-467 (629)
439 PRK11639 zinc uptake transcrip 40.9 1.2E+02 0.0026 26.7 7.0 61 64-125 17-77 (169)
440 smart00777 Mad3_BUB1_I Mad3/BU 40.7 1.2E+02 0.0026 25.1 6.3 40 742-781 82-123 (125)
441 PRK10564 maltose regulon perip 40.0 35 0.00076 32.9 3.6 42 137-178 254-296 (303)
442 COG5108 RPO41 Mitochondrial DN 39.7 2.5E+02 0.0054 30.5 9.7 76 408-483 33-115 (1117)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 39.7 2.2E+02 0.0047 23.6 9.0 44 587-645 81-124 (126)
444 PF09670 Cas_Cas02710: CRISPR- 39.6 84 0.0018 32.2 6.7 52 664-717 140-195 (379)
445 PF08424 NRDE-2: NRDE-2, neces 39.4 4E+02 0.0088 26.6 13.4 114 636-753 47-184 (321)
446 PF00244 14-3-3: 14-3-3 protei 38.4 2.7E+02 0.0059 26.3 9.3 155 626-781 7-193 (236)
447 KOG0991 Replication factor C, 38.4 3.4E+02 0.0073 25.4 10.1 105 481-605 169-274 (333)
448 KOG4814 Uncharacterized conser 38.1 68 0.0015 34.3 5.5 56 697-752 400-457 (872)
449 PF09986 DUF2225: Uncharacteri 38.1 2.7E+02 0.0058 25.8 9.0 88 666-753 88-195 (214)
450 PRK09462 fur ferric uptake reg 37.2 1.4E+02 0.003 25.6 6.7 62 62-124 6-68 (148)
451 PF12796 Ank_2: Ankyrin repeat 37.1 1.6E+02 0.0035 22.1 6.6 50 18-73 5-54 (89)
452 PF04781 DUF627: Protein of un 36.8 1.2E+02 0.0026 24.3 5.5 28 663-690 4-31 (111)
453 PF11663 Toxin_YhaV: Toxin wit 36.7 49 0.0011 27.4 3.5 31 151-183 107-137 (140)
454 KOG4507 Uncharacterized conser 36.4 1.4E+02 0.003 31.8 7.3 125 652-781 568-700 (886)
455 KOG0545 Aryl-hydrocarbon recep 35.2 2.9E+02 0.0063 25.9 8.3 92 628-722 186-296 (329)
456 TIGR01503 MthylAspMut_E methyl 34.6 2.1E+02 0.0045 29.7 8.1 134 227-377 70-220 (480)
457 PHA02537 M terminase endonucle 34.6 3.9E+02 0.0085 25.0 11.0 107 630-756 93-211 (230)
458 COG5159 RPN6 26S proteasome re 34.4 4.3E+02 0.0093 25.4 11.9 32 442-474 10-41 (421)
459 PRK11639 zinc uptake transcrip 34.4 1.4E+02 0.003 26.3 6.4 67 25-91 12-78 (169)
460 COG4941 Predicted RNA polymera 34.4 4.8E+02 0.01 25.9 11.6 127 634-765 270-407 (415)
461 KOG1498 26S proteasome regulat 33.9 5.2E+02 0.011 26.3 11.2 81 696-776 136-231 (439)
462 PF09797 NatB_MDM20: N-acetylt 33.7 5.3E+02 0.012 26.3 14.6 43 738-780 198-240 (365)
463 COG5108 RPO41 Mitochondrial DN 33.4 1.6E+02 0.0034 31.9 7.2 24 179-202 33-56 (1117)
464 KOG4521 Nuclear pore complex, 33.1 9.1E+02 0.02 28.8 14.1 166 252-427 930-1126(1480)
465 cd08326 CARD_CASP9 Caspase act 32.8 1.2E+02 0.0026 22.9 4.9 37 223-259 42-78 (84)
466 PF11768 DUF3312: Protein of u 32.5 4.4E+02 0.0096 28.2 10.3 116 626-744 414-544 (545)
467 PF14561 TPR_20: Tetratricopep 32.4 1.7E+02 0.0036 22.5 5.7 30 688-717 18-48 (90)
468 cd07153 Fur_like Ferric uptake 32.0 96 0.0021 25.1 4.7 45 145-189 6-50 (116)
469 KOG2034 Vacuolar sorting prote 32.0 8.3E+02 0.018 28.0 20.6 54 217-270 364-417 (911)
470 KOG2471 TPR repeat-containing 31.9 4.1E+02 0.009 27.8 9.6 51 730-780 213-263 (696)
471 PF07064 RIC1: RIC1; InterPro 31.8 4.7E+02 0.01 25.1 14.6 85 217-306 159-248 (258)
472 PF13934 ELYS: Nuclear pore co 31.6 4.4E+02 0.0095 24.7 13.6 89 657-751 78-168 (226)
473 cd08819 CARD_MDA5_2 Caspase ac 31.4 2.4E+02 0.0051 21.5 6.9 64 388-454 22-85 (88)
474 PF11817 Foie-gras_1: Foie gra 31.2 1.1E+02 0.0024 29.1 5.6 53 660-712 183-239 (247)
475 cd07153 Fur_like Ferric uptake 31.2 1.2E+02 0.0026 24.5 5.2 46 44-89 6-51 (116)
476 PF12926 MOZART2: Mitotic-spin 30.6 2.4E+02 0.0052 21.4 7.4 43 299-341 29-71 (88)
477 KOG2582 COP9 signalosome, subu 30.3 5.8E+02 0.013 25.7 14.6 31 631-661 288-318 (422)
478 KOG2422 Uncharacterized conser 30.1 7.3E+02 0.016 26.8 12.8 126 626-754 290-450 (665)
479 PLN03192 Voltage-dependent pot 30.0 7.5E+02 0.016 28.9 13.1 135 119-265 533-675 (823)
480 smart00638 LPD_N Lipoprotein N 29.8 7.9E+02 0.017 27.1 20.6 273 90-430 292-574 (574)
481 smart00544 MA3 Domain in DAP-5 29.6 2.9E+02 0.0064 22.1 9.1 24 624-647 6-29 (113)
482 COG5191 Uncharacterized conser 29.6 1.1E+02 0.0024 29.6 5.0 71 692-762 108-181 (435)
483 PF01475 FUR: Ferric uptake re 28.8 1.1E+02 0.0025 24.9 4.7 45 43-87 12-56 (120)
484 TIGR03581 EF_0839 conserved hy 28.5 1.8E+02 0.004 26.5 5.9 62 571-647 165-235 (236)
485 PF14689 SPOB_a: Sensor_kinase 28.2 95 0.0021 21.7 3.4 20 284-303 29-48 (62)
486 PHA03100 ankyrin repeat protei 27.9 7.6E+02 0.017 26.3 15.9 225 1-236 57-305 (480)
487 PRK12356 glutaminase; Reviewed 27.6 4.4E+02 0.0095 26.1 8.8 157 169-339 93-257 (319)
488 PF14669 Asp_Glu_race_2: Putat 27.5 4.6E+02 0.01 23.6 15.5 55 477-531 138-206 (233)
489 PHA02537 M terminase endonucle 27.4 5.2E+02 0.011 24.2 9.8 50 539-601 66-115 (230)
490 PF12926 MOZART2: Mitotic-spin 27.1 2.8E+02 0.0061 21.0 7.2 42 492-533 29-70 (88)
491 PRK14956 DNA polymerase III su 26.4 8.2E+02 0.018 26.1 11.8 73 582-657 213-285 (484)
492 PF10475 DUF2450: Protein of u 26.1 5.5E+02 0.012 25.2 9.6 112 409-529 104-220 (291)
493 KOG1463 26S proteasome regulat 26.1 2.8E+02 0.006 27.5 7.0 18 762-779 133-150 (411)
494 KOG2758 Translation initiation 26.0 6.4E+02 0.014 24.8 11.3 79 674-752 111-196 (432)
495 KOG2659 LisH motif-containing 25.7 5.5E+02 0.012 23.9 10.7 134 630-768 3-149 (228)
496 PF04090 RNA_pol_I_TF: RNA pol 25.1 5.3E+02 0.011 23.5 10.4 28 622-649 43-70 (199)
497 COG2909 MalT ATP-dependent tra 25.0 1.1E+03 0.024 27.2 29.7 53 696-748 623-684 (894)
498 PF01475 FUR: Ferric uptake re 24.9 1E+02 0.0022 25.2 3.7 45 144-188 12-56 (120)
499 smart00804 TAP_C C-terminal do 24.6 69 0.0015 22.5 2.2 24 255-278 38-61 (63)
500 PF09454 Vps23_core: Vps23 cor 24.5 1.5E+02 0.0031 21.1 3.8 50 35-85 5-54 (65)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-93 Score=801.63 Aligned_cols=652 Identities=33% Similarity=0.638 Sum_probs=633.5
Q ss_pred CCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhH
Q 035828 35 NKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVF 114 (781)
Q Consensus 35 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 114 (781)
.++..++|.++.+|++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
|.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSV 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (781)
+++..+.+.|+.++ ..++|+||.+|+++|+++.|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.| +
T Consensus 208 ~~~~~~~~~g~~~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~ 284 (857)
T PLN03077 208 EVHAHVVRFGFELD--VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-V 284 (857)
T ss_pred HHHHHHHHcCCCcc--cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 99999999999876 99999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHH
Q 035828 275 EPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG 354 (781)
Q Consensus 275 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~ 354 (781)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------- 350 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------------- 350 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--------------
Confidence 999999999999999999999999999999999999999999999998888888888888887774
Q ss_pred HHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 035828 355 LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSD 434 (781)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (781)
.||
T Consensus 351 -----------------------------------------------------------------------------~~d 353 (857)
T PLN03077 351 -----------------------------------------------------------------------------TKD 353 (857)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 468
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
..+|+++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 8899999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc--CCCCCHhHHHHHHHHhcccCchHHHHHHH
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL--EFEPNEISIVSILSACTQLGVLRHGKQIH 592 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 592 (781)
+|+++|++++|.++|++|.++|+++|+.+|.+|++.|+.++|+.+|++| ++.||..||+.++.+|++.|+++.+.+++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHhhhcC--------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 035828 593 GHVFHLGFQENSFISSALLDMYSNC--------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSV 658 (781)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 658 (781)
..+.+.|+.++..++++|+++|+++ +|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 9999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 035828 659 ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 659 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 738 (781)
+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|++++.+|..+|+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999977799999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
.+.|+...+++++++|+++..|..|+++|...|+|++|.++++
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999998863
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-84 Score=734.09 Aligned_cols=597 Identities=27% Similarity=0.447 Sum_probs=572.7
Q ss_pred CCCCCCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHH
Q 035828 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVS 81 (781)
Q Consensus 2 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 81 (781)
|+.|+..++|+|+.+|.+.|+++.|+++|++|+.||+.+||.+|.+|++.|++++|+.+|++|...|+.||..||+.+++
T Consensus 116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHH
Q 035828 82 ALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLY 161 (781)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 161 (781)
+|+..+++..+.+++..|.+.|+.|++.++++||.+|++.|++++|.++|++|++||..+||+||.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 035828 162 FREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241 (781)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 241 (781)
|++|.+.|+.||..||+.++.+|+..|+.+.+.+++..+.+.|+.++ ..+||+||.+|++.|++++|.++|++|..||
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999999999876 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHH
Q 035828 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMD 321 (781)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 321 (781)
..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCC
Q 035828 322 FYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSN 401 (781)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 401 (781)
+|++.|++++|.++|++|.+
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~------------------------------------------------------------ 452 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE------------------------------------------------------------ 452 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC------------------------------------------------------------
Confidence 98888888888888887743
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHh
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 481 (781)
+|..+|+++|.+|++.|+.++|+.+|++|.. + +.||..||..++.+|
T Consensus 453 -------------------------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 453 -------------------------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSAC 499 (857)
T ss_pred -------------------------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHH
Confidence 6888999999999999999999999999975 4 999999999999999
Q ss_pred cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
++.|+.+.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|+++||++|.+|+++|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred hc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH-HhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH
Q 035828 562 HL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVF-HLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 562 ~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 637 (781)
+| |+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+.. +|+.++++|++.|+++
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~----------------~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK----------------HYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH----------------HHHHHHHHHHhCCCHH
Confidence 99 699999999999999999999999999999998 789999887 5777777788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+|.+++++|. ++||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|.+.|+|++|.++.+.
T Consensus 643 eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~---l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE---LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999995 899999999999999999999999999988874 5776 67888999999999999999999888
Q ss_pred C
Q 035828 717 L 717 (781)
Q Consensus 717 ~ 717 (781)
|
T Consensus 717 M 717 (857)
T PLN03077 717 M 717 (857)
T ss_pred H
Confidence 8
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.5e-68 Score=582.71 Aligned_cols=532 Identities=17% Similarity=0.155 Sum_probs=487.0
Q ss_pred CCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcC-CCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHH
Q 035828 69 IRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGM-IADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMS 147 (781)
Q Consensus 69 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 147 (781)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999985 5677888899999999999999999999999999999999999
Q ss_pred HHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCCh
Q 035828 148 GCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDI 227 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 227 (781)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|..+++.|.+.|+.++ ..+|+.+|.+|++.|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd--vvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN--VHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCcCH
Confidence 9999999999999999999999999999999999999999999999999999999998766 99999999999999999
Q ss_pred hHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHhcccchhhhhhHH
Q 035828 228 EAAERAFWGMT----CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL--MRSVEPDIATVVTLISLCADSLLLREGRSVH 301 (781)
Q Consensus 228 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 301 (781)
++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .+ +.||..||+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999996 68999999999999999999999999999986 44 9999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCC
Q 035828 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSP 381 (781)
Q Consensus 302 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (781)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|..++.+|++.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~--------------------~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK--------------------KGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------cCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999977 89999999999999999999
Q ss_pred cchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CCCcccHHHHHHHHHhCCChHHHHHHH
Q 035828 382 ESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH---NSDTSCWNIVIVACTQNGHFQEAIKTF 458 (781)
Q Consensus 382 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~ 458 (781)
|+++.|.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999953 589999999999999999999999999
Q ss_pred HHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhh------hc
Q 035828 459 KSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFE------SC 532 (781)
Q Consensus 459 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~ 532 (781)
++|.+.| +.||..||+.++.+|++.|+++.|.+++.+|.+.|+.||..+|++++..+. +.+++|.++.+ .+
T Consensus 743 ~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 743 SEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc
Confidence 9999998 999999999999999999999999999999999999999999999997643 23444444433 22
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHH
Q 035828 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSA 609 (781)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 609 (781)
...+...| .++|+.+|++| |+.||..||+.++.++.+.+..+.+..+++.|...+..|+..
T Consensus 820 ~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~---- 883 (1060)
T PLN03218 820 RPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS---- 883 (1060)
T ss_pred ccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh----
Confidence 22222233 35699999999 799999999999988888889998888888887777777766
Q ss_pred HHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 610 LLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 610 l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+|+++|+++++ ..++|..++++|...|+.|+..
T Consensus 884 ------------~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 ------------NLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------------hhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 56666666632 2368999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-67 Score=574.37 Aligned_cols=527 Identities=16% Similarity=0.159 Sum_probs=464.1
Q ss_pred CCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHH
Q 035828 171 QADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIID 250 (781)
Q Consensus 171 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 250 (781)
.++...|..++..+++.|+++.|..+++.|.+.+..+ |+..+++.++.+|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3444555555666666666666666666666555321 347778888999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 251 GFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
+|++.|+++.|.++|++|.+.| +.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHH--hcCCCchhHHHH
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLK--LGFSNNTIGVNA 408 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ 408 (781)
+|.++|+.|.. .|+.||..+|+.++.+|++.|+++.|.+++.+|.. .|+.||..+|+.
T Consensus 525 eAl~lf~~M~~--------------------~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 525 KAFGAYGIMRS--------------------KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHH--------------------cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 99999998876 78999999999999999999999999999999976 689999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 485 (781)
+|.+|++.|++++|.++|+.|... |+..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.++.+|++.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999654 788999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC----CCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY----NCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
++++|.+++++|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .|++.+|+.+|.+|++.|++++|+++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred hc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc----C----CChhhHHHHHHHH
Q 035828 562 HL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN----C----KSNAAWSSMISAY 630 (781)
Q Consensus 562 ~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~~~~li~~~ 630 (781)
+| |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++++..+.+ + .....|+. ....
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~-g~~~ 822 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS-GRPQ 822 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cccc
Confidence 99 69999999999999999999999999999999999999999999999866321 1 01111110 0111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
...+..+.|+.+|++|++.|+.||..||+.++.++++.++.+.+..+++.|... +..|+..+|+.|++++.+. .++|
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHH
Confidence 123456789999999999999999999999998888899999999999888544 6677789999999998432 3689
Q ss_pred HHHHHhC---CCCCCcc
Q 035828 711 YEFIKNL---PIQPKPG 724 (781)
Q Consensus 711 ~~~~~~~---~~~p~~~ 724 (781)
..++++| ++.|+..
T Consensus 900 ~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 900 FSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 9999988 6777654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-66 Score=570.17 Aligned_cols=511 Identities=24% Similarity=0.330 Sum_probs=470.0
Q ss_pred CCcchhhHHHHHHHhcCCchhhHHHHHHHHhcC-CCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhH
Q 035828 36 KDVVTWNAMITACVENRCVVMGLHFFGEMVEEG-IRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVF 114 (781)
Q Consensus 36 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 114 (781)
++..+|+.+|.+|.+.|++++|+.+|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 356689999999999999999999999999865 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSV 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (781)
+++..+.+.|..++ ..+|++||.+|+++|++++|.++|++|+++|+.+||.+|.+|++.|++++|+++|++|.+.| +
T Consensus 245 ~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~ 321 (697)
T PLN03081 245 QLHCCVLKTGVVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-V 321 (697)
T ss_pred HHHHHHHHhCCCcc--ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 99999999998877 99999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHH
Q 035828 275 EPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG 354 (781)
Q Consensus 275 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~ 354 (781)
.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-------------- 387 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-------------- 387 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------------
Confidence 999999999999999999999999999999999999999889888888888888888888887774
Q ss_pred HHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 035828 355 LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSD 434 (781)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (781)
+||
T Consensus 388 -----------------------------------------------------------------------------~~d 390 (697)
T PLN03081 388 -----------------------------------------------------------------------------RKN 390 (697)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 468
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH-hcCCCChHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALK-SLMGLDTRVQNALI 513 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 513 (781)
..+||++|.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 8999999999999999999999999999998 999999999999999999999999999999976 69999999999999
Q ss_pred HHHHhcCChHHHHHHhhhcC-CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCY-NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
++|++.|++++|.+++++|. .|+..+|++++.+|..+|+.+.|...++++ +..|+ ..+|..++..|++.|++++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999997 789999999999999999999999999999 77785 6799999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHH-------HHHHHHhc----CChHHHHHHHHHHHhCCCCCCHH
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSS-------MISAYGYH----GKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------li~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+++.|.+.|+...+.. +|.. .+.+-..+ .-++...++..+|++.|..||..
T Consensus 550 v~~~m~~~g~~k~~g~---------------s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 550 VVETLKRKGLSMHPAC---------------TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCccCCCe---------------eEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998754321 1100 00000001 11345567888899999999853
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-65 Score=563.90 Aligned_cols=468 Identities=27% Similarity=0.472 Sum_probs=441.4
Q ss_pred CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcC-CCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHH
Q 035828 136 CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSG-EQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVT 214 (781)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 214 (781)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..+.+.|+.++ ..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD--QYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc--hHHH
Confidence 4577899999999999999999999999998864 789999999999999999999999999999999998866 9999
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccch
Q 035828 215 NSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLL 294 (781)
Q Consensus 215 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~ 294 (781)
+.|+.+|++.|+++.|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|..
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhh
Q 035828 295 REGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAI 374 (781)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l 374 (781)
+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|+.|..
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 287 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------------------------- 287 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------------
Confidence 99999999999988888888888888888888888888888877743
Q ss_pred hcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHH
Q 035828 375 LPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEA 454 (781)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 454 (781)
+|+.+||++|.+|++.|+.++|
T Consensus 288 ----------------------------------------------------------~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 288 ----------------------------------------------------------KTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred ----------------------------------------------------------CChhHHHHHHHHHHhCCCHHHH
Confidence 6888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC
Q 035828 455 IKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN 534 (781)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 534 (781)
+++|++|.+.| +.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 535 CNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 535 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
+|+.
T Consensus 389 ~d~~---------------------------------------------------------------------------- 392 (697)
T PLN03081 389 KNLI---------------------------------------------------------------------------- 392 (697)
T ss_pred CCee----------------------------------------------------------------------------
Confidence 6544
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH 694 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 694 (781)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|
T Consensus 393 -------t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 393 -------SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -------eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 4555666677888889999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+.++++|++.|++++|.+++++++..|+..+|++++.+|..+|+.+.|..+++++.+..|+++..|..|+++|.+.|+|+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcC
Q 035828 775 DAVEIGK 781 (781)
Q Consensus 775 ~A~~l~~ 781 (781)
+|.++++
T Consensus 546 ~A~~v~~ 552 (697)
T PLN03081 546 EAAKVVE 552 (697)
T ss_pred HHHHHHH
Confidence 9999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-39 Score=378.30 Aligned_cols=754 Identities=10% Similarity=-0.008 Sum_probs=447.7
Q ss_pred ccchhHHHHHhhcCCchhHHHHhhhhcC----CCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHH
Q 035828 8 PTSTSLLTAYSNVSYFESSLALFYETCN----KDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSAL 83 (781)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 83 (781)
.....+.+.+...|++++|.+.|..... .....+..+...+...|+++.|...|+++.+.. +.+...+..+...+
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 169 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLA 169 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHH
Confidence 4445566667777777777777765431 123445556666666777777777777766553 23445666666666
Q ss_pred hccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHHH
Q 035828 84 TQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCLL 160 (781)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 160 (781)
...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+... ..+...+..++..+...|++++|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777777766553 3445566666666666777777777666553 2244556666666666677777776
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--
Q 035828 161 YFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT-- 238 (781)
Q Consensus 161 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-- 238 (781)
.++.+.+.... +...+......+...|+++.|...+....+..... ...+..+...+...|+++.|...|+...
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 324 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY---LPALLLAGASEYQLGNLEQAYQYLNQILKY 324 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666554321 12222222223344566666666666555544221 1122233334455556666655555543
Q ss_pred -CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHH
Q 035828 239 -CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMN 317 (781)
Q Consensus 239 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 317 (781)
+.+...+..+...+.+.|++++|...++.+.... ..+...+..+...+.+.|++++|.+.++.+.+.... +...+.
T Consensus 325 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 401 (899)
T TIGR02917 325 APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAART 401 (899)
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 1233444455555555555555555555555432 233444555555555555555555555555543321 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCC-CCe-eeHHHHHHH------------HHHHHHHhcccCCchhhhhhhcccCCCcc
Q 035828 318 SLMDFYSKSNSLSKAELLFNAIAPM-NDL-VSWNSMISG------------LFKEMLYLCSQFSFSTLLAILPSCNSPES 383 (781)
Q Consensus 318 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~ll~~------------l~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (781)
.+...+...|++++|.+.++.+... ++. .....+... .+..+. ...+.+..++..+...+...|+
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE-KKQPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHhCCC
Confidence 4555555555555555555544331 110 111111111 111111 1122334445555555556666
Q ss_pred hhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHH
Q 035828 384 LEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSM 461 (781)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m 461 (781)
.+.|.+.+..+.+.. +.+...+..+...+...|++++|.+.++++... | +..++..+...+.+.|+.++|...++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655432 223344455555666666666666666655321 2 3445555556666666666666666666
Q ss_pred HHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChh
Q 035828 462 TQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLC 538 (781)
Q Consensus 462 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 538 (781)
.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|...|+.+. +.+..
T Consensus 560 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 560 AELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 5542 2333444455555666666666666666555432 3345555666666666666666666665543 22334
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.+..+...+...|++++|+..|+++ ...| +..++..+...+...|+++.|..+++.+.+.+.. +...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHH
Confidence 5555556666666666666666665 4334 3445555555556666666666666655554322 22222222222222
Q ss_pred C-----------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 035828 617 C-----------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYN 679 (781)
Q Consensus 617 ~-----------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 679 (781)
. |+..++..++..+...|++++|.+.++++.+. .+.+...+..+...|...|++++|.+.|+
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1 44456777888899999999999999999875 34467788888889999999999999999
Q ss_pred HhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 680 NMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 680 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
++.+. .| ++..+..++..+...|+ .+|+++++++ ...| +...+..+...+...|++++|...++++++.+|.+
T Consensus 795 ~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 795 TVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99865 44 46788999999999999 8899999877 4444 45567788888999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+.++..++.+|.+.|++++|+++++
T Consensus 871 ~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 871 AAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999998863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-38 Score=370.22 Aligned_cols=748 Identities=12% Similarity=0.020 Sum_probs=498.9
Q ss_pred hHHHHHhhcCCchhHHHHhhhh---cCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCC-------------------
Q 035828 12 SLLTAYSNVSYFESSLALFYET---CNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGI------------------- 69 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 69 (781)
.....+.+.|++++|...|++. ...+...+..+...+.+.|+++.|...++++.+.+.
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKF 106 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCH
Confidence 3444555566666666666552 122344455555566666666666666666555442
Q ss_pred ---------------CCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 70 ---------------RFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 70 ---------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
+.....+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|..+++.+
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1222334444444445555555555555555443 223344555555555555555555555544
Q ss_pred C---CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCch
Q 035828 135 H---CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYV 211 (781)
Q Consensus 135 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 211 (781)
. .++...|..+...+...|++++|...|++..+.+ +.+..++..+...+...|+++.|...++.+.+..... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~ 261 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS---P 261 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---c
Confidence 2 1233445555555555566666666665554432 2233445555555555566666666655555543221 1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 035828 212 SVTNSLISMYSQCGDIEAAERAFWGMTCK---DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLC 288 (781)
Q Consensus 212 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 288 (781)
.........+...|++++|...|+.+.+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 12222222334456666666666555422 12223344455667777777777777776632 33445566666777
Q ss_pred hcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCC-eeeHHHHHHH------------
Q 035828 289 ADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP-MND-LVSWNSMISG------------ 354 (781)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~ll~~------------ 354 (781)
.+.|+++.|...+..+.+... .+...+..+...+.+.|++++|.+.|+++.. .|+ ...+..+...
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Confidence 788888888888888776543 3566777888888888888888888887765 222 2222221111
Q ss_pred HHHHHHHhcccCC-chhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-
Q 035828 355 LFKEMLYLCSQFS-FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN- 432 (781)
Q Consensus 355 l~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 432 (781)
.+..... ..|+ ......+...+...|+.+.+..++..+... .+.+..++..+...+...|++++|.+.|+++...
T Consensus 419 ~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 419 DLETAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 1111111 1121 223334455667788888888888877653 3456678888888899999999999998876432
Q ss_pred C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHH
Q 035828 433 S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNA 511 (781)
Q Consensus 433 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (781)
| +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|...+..+...+ +.+...+..
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 3 45567778888888999999999999988753 3456677778888888999999999998887664 335667778
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR 586 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 586 (781)
+...|.+.|++++|..+++.+. ..+...|..+..++...|++++|+..|+++ ...| +...+..+..++...|+++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 8889999999999999998876 345678889999999999999999999998 5555 4566777888888899999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcC------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC------------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
.|...++.+.+.... +...+..+...+... .+...+..+...+...|++++|++.|+++..
T Consensus 653 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 653 KAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988775422 234455555554433 3556677788888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcch
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGV 725 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~ 725 (781)
. .|+..++..+..++.+.|++++|.+.++++++. .|+ ...+..++..|...|++++|.+.++++ . .++++..
T Consensus 732 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 732 R--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred h--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 455577777888888888999999888888765 444 578888888889999999999998887 3 3445667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+..+.+.+...|+ .+|+..++++.++.|+++..+..++.+|...|++++|.+++
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888 78999999999999999999999999999999999998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.7e-25 Score=259.57 Aligned_cols=651 Identities=11% Similarity=0.012 Sum_probs=396.7
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhcc
Q 035828 42 NAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121 (781)
Q Consensus 42 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 121 (781)
-..++.+...++.+.|.+.+.++.... +-+...+..++..+.+.|+.++|.+.+++..+.. |+...+..+...+.
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~-- 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML-- 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH--
Confidence 335567778888888998888887653 3356777778888888889999999888888875 32222111000000
Q ss_pred CChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccCChhHHHHHHHHH
Q 035828 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNV-SLSSAVAASACLGELSYGKVIHALG 200 (781)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 200 (781)
+..|+....-.+...+...|++++|+..|+.+.+.+ +|+.. ....+.......|+.+.|...++.+
T Consensus 107 ------------~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 107 ------------LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred ------------hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 000111111122223334444444444444443321 11111 0101111111234444444444444
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-----------------------CcccHHHHHHHHHhCCC
Q 035828 201 IKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCK-----------------------DVVSWNAIIDGFALNGK 257 (781)
Q Consensus 201 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~ 257 (781)
.+..+. + ...+..+...+...|+.++|+..++++... ....+...+..+-....
T Consensus 174 l~~~P~-~--~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 174 NADYPG-N--TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHhCCC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 444321 1 333444444444455555555554443211 11112222222222223
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFN 337 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 337 (781)
.+.|...+....... ..|+... ...-..+...|++++|...+++..+.... +...+..+..++.+.|++++|...|+
T Consensus 251 ~~~A~~~L~~~~~~~-~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 251 VAAARSQLAEQQKQL-ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHhc-cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554432 2333221 12234455778888888888888876433 56777788888888888888888888
Q ss_pred hhCC-CCCee---eHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 338 AIAP-MNDLV---SWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 338 ~~~~-~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
+..+ .|+.. .|..++.. .........-..+
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~----------------------------------------------~~~~~~~~~g~~~ 361 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKV----------------------------------------------NRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHh----------------------------------------------hhHHHHHHHHHHH
Confidence 7654 11100 01110000 0000011223456
Q ss_pred HhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHH
Q 035828 414 INCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 490 (781)
.+.|++++|...|++.... | +...+..+...+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-hcCHHHH
Confidence 6788888888888876432 3 4455667778888888888888888888774 344 334444444443 4566777
Q ss_pred HHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHHHH
Q 035828 491 KSLHGLALKSLM--------GLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRALEL 559 (781)
Q Consensus 491 ~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 559 (781)
..+++.+....- ......+..+...+...|++++|.+.+++... .+...+..+...|.+.|++++|...
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777665432110 01122345566778889999999999987762 2445677788889999999999999
Q ss_pred Hhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH
Q 035828 560 FRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 560 ~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 637 (781)
++++ ...|+. ..+..+...+...++.++|...++.+......++......-+. ...+..+...+...|+.+
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~-------~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ-------SDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh-------hhHHHHHHHHHHHCCCHH
Confidence 9998 556643 3333344445678889999988887654333222211110000 012345567788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+|+++++. .+++...+..+...+...|+.++|++.|+++++. .|+ ...+..++..|...|++++|++.++.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999882 3445667788888999999999999999999865 666 68889999999999999999999998
Q ss_pred C-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhhHHhhcC
Q 035828 717 L-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG------YYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 717 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+ ...|+ ...+..+..++...|++++|.+.++++.+..|+++. .+..++.++.++|++++|++.++
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7 34554 446677888888999999999999999998876553 56678999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.1e-23 Score=242.28 Aligned_cols=626 Identities=10% Similarity=0.011 Sum_probs=347.5
Q ss_pred hHHHHHhhcCCchhHHHHhhhhc---CCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhH------------
Q 035828 12 SLLTAYSNVSYFESSLALFYETC---NKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTL------------ 76 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------------ 76 (781)
..++.....++.+.|.+.++++. ..|+..+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34556677899999999999853 3367788889999999999999999999999875 333222
Q ss_pred -----HHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHH-HhhccCChhhHHHHhccCCC--C-CeeehHHHHH
Q 035828 77 -----LIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVN-MYAKCGDLNSSECTFSGMHC--A-DTVSWNTIMS 147 (781)
Q Consensus 77 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 147 (781)
..+...+...|++++|.+.++.+.+.. +|+...-..+.. .....|+.++|.+.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 233446778899999999999998764 333321111222 22345899999999998853 3 4556778888
Q ss_pred HHhhCCChhhHHHHHHHHhhcCCCCCcchHHHH--------------------HHHhhccCChhHHHHHHHHHHHhcCCC
Q 035828 148 GCLHNNYPEKCLLYFREMGWSGEQADNVSLSSA--------------------VAASACLGELSYGKVIHALGIKLGYED 207 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (781)
.+...|+.++|+..++++.+.... +...-... +..+-.......+...+....... .
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~--~ 266 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL--A 266 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc--c
Confidence 899999999999999998653210 00000000 111111111122222222221111 1
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH-
Q 035828 208 SPYVSVTNSLISMYSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVT- 283 (781)
Q Consensus 208 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~- 283 (781)
+|... ....-..+...|++++|+..|++.. +.+...+..+...+.+.|++++|...|++..+...-.+....+..
T Consensus 267 dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11111 1122334445566666666665543 124455555666666666666666666665552211111111111
Q ss_pred -----------HHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHH
Q 035828 284 -----------LISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMI 352 (781)
Q Consensus 284 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll 352 (781)
.-..+.+.|++++|...++++.+.... +...+..+...+...|++++|++.|++...
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----------- 413 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALR----------- 413 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------
Confidence 112233455555555555555544321 333444445555555555555555554433
Q ss_pred HHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 035828 353 SGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN 432 (781)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (781)
.. +.+...+..+...|. .++.++|...++.+...
T Consensus 414 --------------------------------------------~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 414 --------------------------------------------MD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSAS 447 (1157)
T ss_pred --------------------------------------------hC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHH
Confidence 11 111222333333332 33455555555544211
Q ss_pred -C----------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 035828 433 -S----------DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISACGNLELAFEGKSLHGLALKS 500 (781)
Q Consensus 433 -~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (781)
+ ....+..+...+...|++++|++.|++..+. .|+. ..+..+...+.+.|++++|...++.+.+.
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 0112334455566666777777777766663 2432 33344445555666666666666655543
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhc
Q 035828 501 LMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACT 580 (781)
Q Consensus 501 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 580 (781)
.. .+...+..+...+...|+.++|...++.+..... +.-+.. +...+ ....+..+...+.
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~---~~~~~~------------l~~~l----~~~~~l~~a~~l~ 584 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW---NSNIQE------------LAQRL----QSDQVLETANRLR 584 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc---ChhHHH------------HHHHH----hhhHHHHHHHHHH
Confidence 21 1222233333334455555666555555442110 000000 00000 0001123344556
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVI 659 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~ 659 (781)
..|+.++|..+++. .|+ +...+..+...+.+.|++++|++.|++..+. .| +...+.
T Consensus 585 ~~G~~~eA~~~l~~------~p~---------------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~ 641 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPP---------------STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARL 641 (1157)
T ss_pred HCCCHHHHHHHHHh------CCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66777777776651 121 1124555667778888888888888888873 44 456777
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-------cchHHHHH
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-------PGVWGAML 730 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~~~l~ 730 (781)
.+...+...|+.++|.+.++.+.+ ..|+ ...+..+..++...|++++|.++++++ ...|+ ...+..+.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 888888888888888888887753 3555 456667778888888888888888876 22221 13455566
Q ss_pred HHHHhcCCcHHHHHHHHHHhc
Q 035828 731 SACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (781)
..+...|++++|+..|+++..
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888874
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.7e-23 Score=229.10 Aligned_cols=647 Identities=10% Similarity=-0.017 Sum_probs=413.0
Q ss_pred cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHH
Q 035828 51 NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECT 130 (781)
Q Consensus 51 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 130 (781)
.|++++|+..|+...+.. |-+..++..+...+...|+.++|...+++..+.. |+...|..++..+ ++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 377777777777777654 2235666777777777777777777777776653 3333333333222 677777777
Q ss_pred hccCC--CC-CeeehHHHHHH--------HhhCCChhhHHHHHHHHhhcCCCCCcchHHHH-HHHhhccCChhHHHHHHH
Q 035828 131 FSGMH--CA-DTVSWNTIMSG--------CLHNNYPEKCLLYFREMGWSGEQADNVSLSSA-VAASACLGELSYGKVIHA 198 (781)
Q Consensus 131 ~~~~~--~~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~ 198 (781)
++++. .| +...+..+... |.+. ++|.+.++ .......|++.+.... .+.+...++++.+..++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 77763 23 23333333333 3333 44444444 3333333444444444 677777777777777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHh-cCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 035828 199 LGIKLGYEDSPYVSVTNSLISMYSQ-CGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPD 277 (781)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd 277 (781)
.+.+.+... ......|-.+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.++++++.....-.|+
T Consensus 207 ~L~k~~pl~---~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 207 EARQQNTLS---AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHhcCCCC---HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 777776432 3345555556666 366 88888877544567888889999999999999999999998774423466
Q ss_pred HHHHHHHHHHHhcccchh-hhhhHHHHHHHhcCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHH
Q 035828 278 IATVVTLISLCADSLLLR-EGRSVHGYAIRRLLGYD-LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGL 355 (781)
Q Consensus 278 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l 355 (781)
..++..++. +.+... .+..-+.. ...++ ....-.++..+.+.++++.+.++.. ...
T Consensus 283 ~~~~~~~l~---r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------- 340 (987)
T PRK09782 283 EKSWLYLLS---KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLP-------------- 340 (987)
T ss_pred cHHHHHHHH---hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCC--------------
Confidence 655554443 333322 11111111 01111 1122334778888899987776643 211
Q ss_pred HHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CCC
Q 035828 356 FKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NSD 434 (781)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~ 434 (781)
.......-..+....+...++...+..|.+. ..-+....-.+-....+.|+.++|..+++..-+ +++
T Consensus 341 -----------~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 341 -----------ANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred -----------cchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 1111100011111223334444444444332 122333444444456678888888888887654 222
Q ss_pred ----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh-cC-CC--Ch
Q 035828 435 ----TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKS-LM-GL--DT 506 (781)
Q Consensus 435 ----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~--~~ 506 (781)
....+-++..|.+.+......+...-. .+++..+- |.-.|+...+.......... +. ++ +.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILS-----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhc-----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 223446667777776633332222111 11122111 11123333333333333221 12 23 56
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH--HHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccC
Q 035828 507 RVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCM--ISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLG 583 (781)
Q Consensus 507 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~ 583 (781)
..+..+..++.. ++.++|...+.......+..++.+ ...+...|++++|...|+++ ...|+...+..+..++...|
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 677777777776 888899997776553223344444 34446899999999999998 45566666667777888899
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+.+.|...++...+.. |+... .+..+...+...|++++|+..+++..+ ..|+...+..+..
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~---------------l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~ 617 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNA---------------LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARAT 617 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHH---------------HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 9999999999988765 32210 222233344566999999999999998 6788889999999
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
++.+.|+.++|...+++.++. .|+ ...+..+..++...|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999854 777 578889999999999999999999987 5556 4567899999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+|+..+++++++.|++..+....+++..++.+++.|.+-
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998774
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4.4e-21 Score=211.83 Aligned_cols=493 Identities=11% Similarity=0.028 Sum_probs=304.0
Q ss_pred HHhcCChhHHHHHhccCCCC--CcccHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ccchhh
Q 035828 221 YSQCGDIEAAERAFWGMTCK--DVVSWNAI-IDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD-SLLLRE 296 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~-~~~~~~ 296 (781)
|.+.+....+++ .+...| +..+.... .+.|.+.|++++|++++.++.+.+ ..+..-...+-..+.. .++ +.
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HH
Confidence 666666666666 233333 34434444 888999999999999999999964 2233334555555655 355 66
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCeeeHHHHHHHHHHHHHHhcccCCchhhh
Q 035828 297 GRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP----MNDLVSWNSMISGLFKEMLYLCSQFSFSTLL 372 (781)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 372 (781)
+..+++. .++-+......+...|.+.|+.++|..+++++.. .++..+|--.+.
T Consensus 235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~------------------- 291 (987)
T PRK09782 235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS------------------- 291 (987)
T ss_pred HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH-------------------
Confidence 6666432 3446788889999999999999999999998876 122222222211
Q ss_pred hhhcccCCCcchhhhHHHHHHHHHhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCCh
Q 035828 373 AILPSCNSPESLEFGKSIHCWQLKLGFSNNT-IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHF 451 (781)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 451 (781)
........ +..-+.. ...++. ...-.++..+.+.++++.+.++.. . .|.....-.-..+....+..
T Consensus 292 ----r~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 292 ----KYSANPVQ--ALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T--LPANEMLEERYAVSVATRNK 358 (987)
T ss_pred ----hccCchhh--hccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C--CCcchHHHHHHhhccccCch
Confidence 11111000 0000000 000000 011112444555555555544422 1 11111110001111122444
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCC---hHHH-
Q 035828 452 QEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKS--LMGLDTRVQNALITMYGRCRD---IKSA- 525 (781)
Q Consensus 452 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A- 525 (781)
.++...++.|.+.. +-+.....-+--...+.|+.++|.+++...... .-.++.....-|+..|.+.+. ..++
T Consensus 359 ~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 359 AEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 44444444444431 112222222222233445555555555554431 112233333444455544443 1112
Q ss_pred ------------------------HHHhhhcC---CC--ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHH
Q 035828 526 ------------------------STVFESCY---NC--NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSI 575 (781)
Q Consensus 526 ------------------------~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~l 575 (781)
...+.... .. +...|..+..++.. ++.++|+..+.+. ...|+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 11122221 12 45577777777766 8999999988887 677886654455
Q ss_pred HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 035828 576 LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK 655 (781)
Q Consensus 576 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 655 (781)
..++...|++++|...++.+... .|+.. .+..+...+...|+.++|...+++..+. .|+.
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~----------------a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~ 575 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNE----------------DLLAAANTAQAAGNGAARDRWLQQAEQR--GLGD 575 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcH----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcc
Confidence 55667899999999999987543 22222 3555667788899999999999999885 3544
Q ss_pred H-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 035828 656 S-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSA 732 (781)
Q Consensus 656 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 732 (781)
. .+..+...+...|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 3334444555679999999999999854 788888999999999999999999999987 55665 4567888888
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|++++|+..+++++++.|+++.++.+++.+|...|++++|++.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=9.3e-20 Score=177.44 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=174.4
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchH
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILSACTQLGVLR 586 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~ 586 (781)
|-..|...+.++.|...+.+.. ....+.+..+...|-.+|..+-|+..|++. ++.|+. ..|+.|..++-..|++.
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 3333444444444444444322 112234444444555555555666655555 555542 35666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHh
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSAC 665 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~ 665 (781)
+|...+......... ...+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|
T Consensus 338 ea~~cYnkaL~l~p~-----------------hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPN-----------------HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIY 398 (966)
T ss_pred HHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHH
Confidence 666666555543221 122567788889999999999999999887 77765 4788899999
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 742 (781)
-..|++++|+..+++.+ .++|+ ...|+.+...|-..|+.+.|++.+.++ .+.|. ....+.|...+...|+..+|
T Consensus 399 kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999999987 67998 589999999999999999999988876 66675 44678888888899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
++-|++++++.|+.|.++.+|...+.--.+|.+
T Consensus 476 I~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999887665555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-18 Score=169.93 Aligned_cols=353 Identities=16% Similarity=0.182 Sum_probs=300.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
-..+|+.+.+.+-..|++++|+.+++.+... | .+..|..+..++...|+.+.|...|.+..+ +.|+.....+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence 4578888999999999999999999987443 4 567899999999999999999999999988 6688776655444
Q ss_pred Hh-cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhH
Q 035828 480 AC-GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 480 ~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 555 (781)
.+ ...|+.++|...+.+.+..... -...|+.|.-.+-..|+...|+.-|++...-|+ ..|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 43 4478889999888877765321 245577788888899999999999998874443 588888999999999999
Q ss_pred HHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc
Q 035828 556 ALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH 633 (781)
Q Consensus 556 A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 633 (781)
|+..|.+. ...|+. +.+..+...|...|.++.|..-+++.++... +.. .+|+.|..++-..
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~---------------~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFP---------------DAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC--Cch---------------HHHhHHHHHHHhc
Confidence 99999998 788864 5666666678889999999999998887543 322 2799999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
|+..+|.+.|.+... +.|+. .+.+.|...+...|.+++|..+|...+ .+.|. ....+.|...|-++|++++|+
T Consensus 334 G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred cchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 999999999999988 66654 488999999999999999999999886 56888 588999999999999999999
Q ss_pred HHHHhC-CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 712 EFIKNL-PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 712 ~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.-++++ .++|+. ..++.+...+...|+.+.|.+.+++++..+|--..++.+|+.+|...|+..+|++-+
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999887 788874 489999999999999999999999999999999999999999999999999998754
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.2e-16 Score=164.74 Aligned_cols=660 Identities=12% Similarity=0.059 Sum_probs=378.0
Q ss_pred cchhhHHHHHHHhcCCchhhHHHHHHHHhcC----CCCChh---hHHHHHHHHhccC-----------cccchhHHHHHH
Q 035828 38 VVTWNAMITACVENRCVVMGLHFFGEMVEEG----IRFDST---TLLIIVSALTQMN-----------CLKQGRVVHCLS 99 (781)
Q Consensus 38 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~---~~~~ll~~~~~~~-----------~~~~a~~~~~~~ 99 (781)
..+|..+...|.+.|..++.+.+++.-.... -.++.. .++.+...+...+ -...|..+|...
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 4568888888899999888888887755111 011111 2222222222221 122233333333
Q ss_pred HHhcCCCCc-chhhhHHHHhhccCChhhHHHHhccCCCCCee-ehHHHHHHH--hhCCChhhHHHHHHHHhhc--CCCCC
Q 035828 100 IKAGMIADS-SLCNVFVNMYAKCGDLNSSECTFSGMHCADTV-SWNTIMSGC--LHNNYPEKCLLYFREMGWS--GEQAD 173 (781)
Q Consensus 100 ~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~ 173 (781)
-+.....++ .++...........+++.|...|..+.+.+.. ....|..++ ...+++-.|+.+|+..... ..+||
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 332222222 22222222222222357888888777533222 223344443 3467899999999985443 44555
Q ss_pred cchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhc---CChhHHHHHhccCC---CCCcccHHH
Q 035828 174 NVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQC---GDIEAAERAFWGMT---CKDVVSWNA 247 (781)
Q Consensus 174 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~---~~~~~~~~~ 247 (781)
+.. .+-.++...++.+.|...|....+..+. + +.++-.|-..-... ..+..+..++...- ..++...+.
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~-~--v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~ 275 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQLDPT-C--VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNH 275 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhcChh-h--HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 432 2224456778888888888887776531 1 33333332222222 33445555554442 457888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 035828 248 IIDGFALNGKFEEAFDLLHEMQLMRSVE-PDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKS 326 (781)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 326 (781)
|...|.-.|++..++++...+....... .-...|-.+-+++-..|++++|...|-+..+....-....+--|...|.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 9999999999999999998887643111 123457778888889999999999988777654333234445678889999
Q ss_pred CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCc-hhhhhhhcccCCCc----chhhhHHHHHHHHHhcCCC
Q 035828 327 NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSF-STLLAILPSCNSPE----SLEFGKSIHCWQLKLGFSN 401 (781)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~ 401 (781)
|+++.+...|+.+.. ..|+. .++..+=..+...+ ..+.|..++....+.- ..
T Consensus 356 ~dle~s~~~fEkv~k----------------------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLK----------------------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred chHHHHHHHHHHHHH----------------------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 999999999988755 22222 22222222222222 2233333332222211 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHH-------HhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCCh
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLL-------QRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQ---QNASPDS 471 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~-------~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~~p~~ 471 (781)
|...|-.+-..+-.. +...++..| ..-...+.+...|.+...+...|++.+|...|+..... . ..+|.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~-~n~de 490 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV-ANKDE 490 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh-cCccc
Confidence 333443333333332 222223333 32223356666777777777777777777777776554 1 22232
Q ss_pred h------hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHH
Q 035828 472 V------TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNC 542 (781)
Q Consensus 472 ~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 542 (781)
. +--.+.......++.+.|.+.+..+.+.... -+..|--+..+....+...+|...+.... ..++..|+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 1 1122333334455666666666666554211 11111111111112244455555555443 233445555
Q ss_pred HHHHHHhCCChhHHHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 543 MISAFSQNKAEVRALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
+...+.....+..|..-|..+ ...+|..+..+|-..|.. .+....-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~------------~l~~~~r------------------ 619 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ------------ALHNPSR------------------ 619 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH------------Hhccccc------------------
Confidence 555555555555555544444 122343333333222111 0000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIV 698 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 698 (781)
+.-...+..++|+++|.+.+.. -+-|.+.-+.+...++..|++++|..+|.++.+.. .-...+|.+++
T Consensus 620 ---------n~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNla 687 (1018)
T KOG2002|consen 620 ---------NPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLA 687 (1018)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHH
Confidence 0013456788999999998874 23366777777778888999999999999998762 22356788999
Q ss_pred HHhhhcCChHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 699 DMLGRSGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.+|..+|+|..|+++++.. ....++.+...|.+++...|.+.+|++++..+..+.|.++...++++-...+.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999999876 23456778899999999999999999999999999999999999888876554
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.83 E-value=3.7e-17 Score=166.18 Aligned_cols=634 Identities=10% Similarity=-0.025 Sum_probs=315.6
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCC
Q 035828 58 LHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCA 137 (781)
Q Consensus 58 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 137 (781)
..++-.+...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+.+..+++.++.+..+.++.+.+. .|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 356667777788888888888888888888887777 7777777777777777788887777777776555 56
Q ss_pred CeeehHHHHHHHhhCCChhhHHHHHHH-HhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHH
Q 035828 138 DTVSWNTIMSGCLHNNYPEKCLLYFRE-MGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNS 216 (781)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 216 (781)
...+|..|..+|...||+.. ++.-++ |. .++..+...|.-.....++... ...+.. ...-..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~--lpda~n 144 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKI--HCCPHS--LPDAEN 144 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhc--ccCccc--chhHHH
Confidence 77778888888888877665 222222 21 1111122222211111111110 000000 011111
Q ss_pred HHHHHHhcCChhHHHHHhccCC----------------------------------CCCcccHHHHHHHHHhCCChhHHH
Q 035828 217 LISMYSQCGDIEAAERAFWGMT----------------------------------CKDVVSWNAIIDGFALNGKFEEAF 262 (781)
Q Consensus 217 ll~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~li~~~~~~~~~~~a~ 262 (781)
++......|-++.+++++..+| .++..+|.+++.+-..+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 2222223333344444443333 245555555555555555555555
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 035828 263 DLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPM 342 (781)
Q Consensus 263 ~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 342 (781)
.++.+|++.| +..+..-|..++-+ .++...++.++..|.+.|+.|+..|+...+-.+..+|....+..
T Consensus 225 ~ll~emke~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e-------- 292 (1088)
T KOG4318|consen 225 NLLYEMKEKG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE-------- 292 (1088)
T ss_pred HHHHHHHHcC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------
Confidence 5555555555 55555544444433 44555555555555555555555555544444443332111111
Q ss_pred CCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCC----cchh--hh---HHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 343 NDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSP----ESLE--FG---KSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 343 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~--~a---~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
|.+.+...-..+..+.++. .+++ .. ...+....=.|+.....+|...+. .
T Consensus 293 --------------------~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l 351 (1088)
T KOG4318|consen 293 --------------------GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-L 351 (1088)
T ss_pred --------------------ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-H
Confidence 1111111001111111110 0000 00 000111111244443433333322 2
Q ss_pred HhcCCHHHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCChHHHHHHHH--HHHHcCCCCCChhhHHHHHHHhcCc
Q 035828 414 INCGDLVAAFSLLQRISHNS-------DTSCWNIVIVACTQNGHFQEAIKTFK--SMTQQQNASPDSVTLVNVISACGNL 484 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~--~m~~~~~~~p~~~~~~~ll~~~~~~ 484 (781)
..+|+-++...+...+ ..| ++..|..++.-|.+.-+..-...++. +..+. ..+....-.+.....+.
T Consensus 352 ~hQgk~e~veqlvg~l-~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~---~l~se~tp~vsell~~l 427 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQL-LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL---NLNSEDTPRVSELLENL 427 (1088)
T ss_pred HHcCCCchHHHHHhhh-cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHh
Confidence 3356666666666655 222 23345444444443222111111111 11110 00000000011110000
Q ss_pred cchHHHHHHHHHHHH----hcC-------CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCC-ChhhHHHHHHHHHhCCC
Q 035828 485 ELAFEGKSLHGLALK----SLM-------GLDTRVQNALITMYGRCRDIKSASTVFESCYNC-NLCTWNCMISAFSQNKA 552 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~----~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 552 (781)
+...+.+-+..+.. +.+ .+-...-+.++..+++.-+..+++..-+..... =.-.|..||+-++.+++
T Consensus 428 -rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 428 -RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDK 506 (1088)
T ss_pred -CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Confidence 11111111111100 000 112233345555555555555555333322210 01367888888888888
Q ss_pred hhHHHHHHhhc----C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC-CCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 553 EVRALELFRHL----E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGF-QENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 553 ~~~A~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
.+.|+.+..+. . ..-|..-+..+.+...+.+....+..++.++.+.-. .|+..+ ++--+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~---------------~~f~~ 571 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI---------------ILFPL 571 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH---------------HHHHH
Confidence 88888888887 1 455666777788888888888888888888776222 222111 33445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH-------
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV------- 698 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~------- 698 (781)
.++.+..|+.+...++.+-+...|+.-+ ..++....+.++...|.+..+...+.+.+.|. ...+-.++
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 5566777887777777777777665442 34455666777777777777776665544443 12222222
Q ss_pred -----------HHhhhcCChHHHHHHHHhCC---------------CCC---------CcchHHHHHHHHHhcCCcHHHH
Q 035828 699 -----------DMLGRSGKLQEAYEFIKNLP---------------IQP---------KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 699 -----------~~~~~~g~~~~A~~~~~~~~---------------~~p---------~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|.+.|++.+|.++.+.-+ +.| +......++..+.+.|+.+.|.
T Consensus 648 ~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~ 727 (1088)
T KOG4318|consen 648 PQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERAS 727 (1088)
T ss_pred HHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHH
Confidence 23677888888887766542 111 1122345666778888888888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 744 QVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 744 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+|.++. -.+++....+|+.++.+.....+
T Consensus 728 glwnK~Q--V~k~~~~l~~LAsIlr~~n~evd 757 (1088)
T KOG4318|consen 728 GLWNKDQ--VSKSPMKLFHLASILRRMNEEVD 757 (1088)
T ss_pred hHHhhCc--CCcchHHHHHHHHHHHhhchhcc
Confidence 8888875 33456677788888877665443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6.9e-17 Score=176.41 Aligned_cols=91 Identities=13% Similarity=-0.043 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHH
Q 035828 245 WNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYS 324 (781)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 324 (781)
+......+.+.|++++|+..|++... +.|+...|..+..++.+.|+++.|...++...+.... +...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 45566778888999999999998877 6788888888888888899999999998888876432 5667778888899
Q ss_pred hcCCHHHHHHHHHhh
Q 035828 325 KSNSLSKAELLFNAI 339 (781)
Q Consensus 325 ~~~~~~~a~~~~~~~ 339 (781)
..|++++|..-|...
T Consensus 206 ~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 206 GLGKYADALLDLTAS 220 (615)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999998877654
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.5e-15 Score=141.92 Aligned_cols=343 Identities=12% Similarity=0.077 Sum_probs=237.0
Q ss_pred eeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHH---HHhcCCCCCchhHHH
Q 035828 139 TVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALG---IKLGYEDSPYVSVTN 215 (781)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~p~~~~~~ 215 (781)
+.+=|.|++. ...|....+.-+|+.|+..|++.+...-..+++..+-.+.-+....-+++. .+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S---~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS---TSSW- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc---cccc-
Confidence 3455666553 557889999999999999999998887777776654333322222222222 2222221 1222
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchh
Q 035828 216 SLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLR 295 (781)
Q Consensus 216 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~ 295 (781)
+.|++.+ ++-+...++..+|..+|.++|+--..+.|.+++++-.... .+.+..+||.+|.+-+- .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSY----S 255 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHh----h
Confidence 3455443 4455555678899999999999999999999999999877 89999999999987542 2
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAIL 375 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll 375 (781)
...+++.+|.....+||..|+|+++++..+.|+++.|...+-++. .+|..-|+.|.-.+|..++
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil----------------~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL----------------GEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH----------------HHHHHhCCCcchhhHHHHH
Confidence 338899999999999999999999999999999998887665542 3666688888888888888
Q ss_pred cccCCCcchhh-hHHHHHHHHH----hcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------CC---cc
Q 035828 376 PSCNSPESLEF-GKSIHCWQLK----LGFSN----NTIGVNALMHMYINCGDLVAAFSLLQRISHN-------SD---TS 436 (781)
Q Consensus 376 ~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~---~~ 436 (781)
..+++.++..+ +..+..++.. ..++| +..-|...|..|.+..+.+-|.++..-+... |+ ..
T Consensus 320 k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 320 KNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred HHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 88777777644 3333333332 22333 3344556666677777777777776555332 11 12
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMY 516 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 516 (781)
-|..+....|+....+.-...|+.|.-.- +-|+..+..-++++....+.++-..++|.+++..|.........-++..+
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 35556667777777777788888887766 77777777778887777778888888887777776554444443333333
Q ss_pred Hh
Q 035828 517 GR 518 (781)
Q Consensus 517 ~~ 518 (781)
++
T Consensus 479 ~~ 480 (625)
T KOG4422|consen 479 AR 480 (625)
T ss_pred hc
Confidence 33
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=9.5e-17 Score=174.25 Aligned_cols=326 Identities=12% Similarity=0.063 Sum_probs=211.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhc
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISACG 482 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~ 482 (781)
...++..+.+.|++++|..+++..... | +...+..+..+....|++++|+..|+++... .|+. ..+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHH
Confidence 344556667778888888777766332 3 3444555556666778888888888887774 3443 34555556677
Q ss_pred CccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC-ChhhHHHHHHHHHhCCChhHHHHH
Q 035828 483 NLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC-NLCTWNCMISAFSQNKAEVRALEL 559 (781)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~ 559 (781)
..|+++.|...++.+.... +.+...+..+...+...|+.++|...++.+. .| +...+..+ ..+...|++++|+..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 7778888888777776652 2245566677777777888888877776553 22 22233222 336677788888877
Q ss_pred Hhhc-CCC--CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 035828 560 FRHL-EFE--PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKG 636 (781)
Q Consensus 560 ~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 636 (781)
++++ ... ++...+..+..++...|++++|...++...+... + +...+..+...+...|++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~---------------~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--D---------------GAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C---------------CHHHHHHHHHHHHHcCCc
Confidence 7776 322 2333344445566777778888777777766432 2 122566677777777777
Q ss_pred HH----HHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 637 WE----AIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 637 ~~----A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
++ |+..|++..+ ..|+ ...+..+...+...|++++|...+++.++. .|+ ...+..+..+|.+.|++++|
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 75 6777777776 4453 446777777777778888888887777643 555 35666677777778888888
Q ss_pred HHHHHhC-CCCCCcchH-HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 711 YEFIKNL-PIQPKPGVW-GAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 711 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
++.++++ ...|+...+ ..+..++...|++++|...++++.+..|++..
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 7777766 345554333 33455566778888888888888777777543
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=2.7e-17 Score=170.84 Aligned_cols=294 Identities=14% Similarity=0.095 Sum_probs=195.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCC---hHHHHHHHHHHHhc
Q 035828 251 GFALNGKFEEAFDLLHEMQLMRSVEPD-IATVVTLISLCADSLLLREGRSVHGYAIRRLLGYD---LLMMNSLMDFYSKS 326 (781)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 326 (781)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556666666666666653 233 33555555566666666666666666655432211 23456666677777
Q ss_pred CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHH
Q 035828 327 NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406 (781)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 406 (781)
|++++|..+|+++.+ .-..+..++
T Consensus 121 g~~~~A~~~~~~~l~--------------------------------------------------------~~~~~~~~~ 144 (389)
T PRK11788 121 GLLDRAEELFLQLVD--------------------------------------------------------EGDFAEGAL 144 (389)
T ss_pred CCHHHHHHHHHHHHc--------------------------------------------------------CCcchHHHH
Confidence 777777777776644 012234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCC-CCc------ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 407 NALMHMYINCGDLVAAFSLLQRISHN-SDT------SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
..++..+.+.|++++|.+.++.+... |+. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+..
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 222 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHH
Confidence 66666666666666666666665332 211 124455566677777888888887777642 122345555666
Q ss_pred HhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChhHHH
Q 035828 480 ACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEVRAL 557 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 557 (781)
.+.+.|++++|..+++++...+.......++.++.+|.+.|++++|...++++. .|+...+..++..+.+.|++++|.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 777778888888887777765433334566778888888888888888888765 345555677888888999999999
Q ss_pred HHHhhc-CCCCCHhHHHHHHHHhcc---cCchHHHHHHHHHHHHhCCCCCch
Q 035828 558 ELFRHL-EFEPNEISIVSILSACTQ---LGVLRHGKQIHGHVFHLGFQENSF 605 (781)
Q Consensus 558 ~~~~~~-~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 605 (781)
.+++++ ...|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999888 778999888888877654 558889999999999888877776
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=3.9e-17 Score=169.57 Aligned_cols=287 Identities=13% Similarity=0.080 Sum_probs=210.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcC
Q 035828 444 ACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLD---TRVQNALITMYGRCR 520 (781)
Q Consensus 444 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 520 (781)
.+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|..+++.+...+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3455667777777777776642 12334556666666777777777777776665432221 245677778888888
Q ss_pred ChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH------hHHHHHHHHhcccCchHHHHH
Q 035828 521 DIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE------ISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 521 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~------~~~~~ll~~~~~~~~~~~a~~ 590 (781)
++++|..+|+++.. .+..+++.++..+...|++++|++.++++ ...|+. ..+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888887764 34567888888888888888888888888 333321 134455666778899999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
.++++.+.. |+. ..++..+...+...|++++|+++++++.+.+......++..++.++...|+
T Consensus 202 ~~~~al~~~--p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 202 LLKKALAAD--PQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhHC--cCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 998887754 221 125677788889999999999999999874322224567888899999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHh---cCCcHHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH---HGDTKMGKQVA 746 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 746 (781)
+++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++..++
T Consensus 265 ~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 265 EAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 99999999998754 677777788999999999999999999876 567888888888777664 56888999988
Q ss_pred HHHhcc
Q 035828 747 ELLFKL 752 (781)
Q Consensus 747 ~~~~~~ 752 (781)
+++.+.
T Consensus 342 ~~~~~~ 347 (389)
T PRK11788 342 RDLVGE 347 (389)
T ss_pred HHHHHH
Confidence 888864
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.2e-14 Score=150.13 Aligned_cols=548 Identities=14% Similarity=0.069 Sum_probs=328.7
Q ss_pred chhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhc--CCCCcchhhhHHHHhhccCChhhHHHHh
Q 035828 54 VVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAG--MIADSSLCNVFVNMYAKCGDLNSSECTF 131 (781)
Q Consensus 54 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (781)
.+.|...|....+.. +++.-.+-.=.......+++..|..+|....... ..||+.+ .+-.++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 478888888888764 3444333333333346789999999999976654 3455433 3346677999999999999
Q ss_pred ccCCCCCeeehHHHHHHH---hhC---CChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035828 132 SGMHCADTVSWNTIMSGC---LHN---NYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGY 205 (781)
Q Consensus 132 ~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 205 (781)
....+-|+..-++++... ... ..+..++.++...-..+ .-++...+.|-..+-..|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 988776665555555432 122 23445555555443322 23455666777777788888888888777776653
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-H
Q 035828 206 EDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC--KD--VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIA-T 280 (781)
Q Consensus 206 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t 280 (781)
....-...|--+-.+|...|+++.|...|.+..+ +| +..+--+...+.+.|+.+.+...|+...+ ..||.. |
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchHHH
Confidence 2221144566677888888888888888866552 22 33455567778888888888888888877 455554 4
Q ss_pred HHHHHHHHhccc----chhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHH
Q 035828 281 VVTLISLCADSL----LLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLF 356 (781)
Q Consensus 281 ~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~ 356 (781)
..++-..+...+ ..+.|..++....+.- +.|...|-.+-..+. .++...++.+|....
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~---------------- 440 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNAL---------------- 440 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHH----------------
Confidence 444333344332 3344444444444433 224445544444443 334444455554432
Q ss_pred HHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----
Q 035828 357 KEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN---- 432 (781)
Q Consensus 357 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 432 (781)
+.+...+..+.+...|.+-..+...|++..|...|+.....
T Consensus 441 -----------------------------------d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 441 -----------------------------------DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred -----------------------------------HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 23344555677788888888888888888888888765332
Q ss_pred --CCcc------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHH-HHHHhcCccchHHHHHHHHHHHHhcCC
Q 035828 433 --SDTS------CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVN-VISACGNLELAFEGKSLHGLALKSLMG 503 (781)
Q Consensus 433 --~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (781)
++.. +--.+...+-..++++.|.+.|..+.+.. |+.+.-.. +.......+...+|...++...... .
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 2221 12223444555678889999999988853 66554333 3323344567777877777776543 2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHhhhcC-----CCChhhHHHHHHHHH------------hCCChhHHHHHHhhc-CC
Q 035828 504 LDTRVQNALITMYGRCRDIKSASTVFESCY-----NCNLCTWNCMISAFS------------QNKAEVRALELFRHL-EF 565 (781)
Q Consensus 504 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~-~~ 565 (781)
.++..++-+-..+.+..++..|.+-|+.+. .+|..+.-+|.+.|. ..+..++|+++|.+. ..
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 244455545557777777777777444332 223332223333221 233456677777766 54
Q ss_pred CC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 035828 566 EP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFH 644 (781)
Q Consensus 566 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 644 (781)
.| |...-+.+--.++..|++..|..+|..+.+.... ...+|-.+.++|...|++..|+++|+
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-----------------~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-----------------FEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-----------------CCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 55 4455555555566667777777777666665441 11146666777777777777777776
Q ss_pred HHHhCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 645 EMCNSG-IRPTKSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 645 ~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
...+.- -..+......|.+++...|++.+|.+.+....
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 655432 23344566666667766677777666666654
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.4e-15 Score=140.55 Aligned_cols=422 Identities=16% Similarity=0.149 Sum_probs=289.0
Q ss_pred cchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHH---HhcCCCCcchhhhH
Q 035828 38 VVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSI---KAGMIADSSLCNVF 114 (781)
Q Consensus 38 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l 114 (781)
+.+=|.|+.. ...|...++--+|+.|.+.|++.+...-..|++..+-.+.-+--..-+++.. ..| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4567899999999999999999888887777776665554333333344443 333 2333332
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
+.|++.+ ++-+.......+|..||.++|+.-..+.|.+++++-.+...+.+..+|+.+|.+.+-.. .+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 3455443 44444445667999999999999999999999999999999999999999998876443 38
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHH----HhccCC----CCCcccHHHHHHHHHhCCChhH-HHHHH
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAER----AFWGMT----CKDVVSWNAIIDGFALNGKFEE-AFDLL 265 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~ 265 (781)
.++.+|+.....|+ ..++|+++.+..+.|+++.|.+ ++.+|+ +|...+|..+|..+++.++..+ +..+.
T Consensus 259 ~Lv~EMisqkm~Pn--l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 259 KLVAEMISQKMTPN--LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHHHHHHHhhcCCc--hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 89999999988866 9999999999999998877654 445554 6888999999999999888755 44444
Q ss_pred HHHHH----cC--CCCC-CHHHHHHHHHHHhcccchhhhhhHHHHHHHhc----CCCC---hHHHHHHHHHHHhcCCHHH
Q 035828 266 HEMQL----MR--SVEP-DIATVVTLISLCADSLLLREGRSVHGYAIRRL----LGYD---LLMMNSLMDFYSKSNSLSK 331 (781)
Q Consensus 266 ~~m~~----~~--~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~ 331 (781)
.+++. +. .+.| |...|..-+..|.+..+.+.|.++...+.... +.|+ ...|..+....+.....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 11 0223 45567888888989999999998887776432 2333 3345667777888888888
Q ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHH
Q 035828 332 AELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMH 411 (781)
Q Consensus 332 a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 411 (781)
....|+.|.. +-.-|+..+...++++....+.++...+++..+...|...+...-.-++.
T Consensus 417 ~~~~Y~~lVP--------------------~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 417 TLKWYEDLVP--------------------SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHhcc--------------------ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 8888888877 66778899999999999999999999999999999987777666666666
Q ss_pred HHHhcC-CH--------HH-----HHHHHHhhcC--------CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 035828 412 MYINCG-DL--------VA-----AFSLLQRISH--------NSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASP 469 (781)
Q Consensus 412 ~~~~~~-~~--------~~-----a~~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 469 (781)
.+++.. +. .. |..+++..+. +-.....+.+.-.+.+.|+.++|.++|..+.++++-.|
T Consensus 477 ~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 477 LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 666544 11 11 1112221111 11333455555556666666666666666655554444
Q ss_pred ChhhHH---HHHHHhcCccchHHHHHHHHHHH
Q 035828 470 DSVTLV---NVISACGNLELAFEGKSLHGLAL 498 (781)
Q Consensus 470 ~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~ 498 (781)
-....+ -+++.....++...|...++.+.
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 23333344444444444444443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.5e-15 Score=167.03 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=75.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC----------CCCC--
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPT-----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYD----------VRPE-- 690 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~-- 690 (781)
..|...|++++|+..|+++.+. .|. ......+..++...|++++|.+.++++.+... -.|+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3445555566666555555432 111 12333444455555556666655555543210 0011
Q ss_pred -cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 691 -TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
...+..++..+...|++++|++.++++ ...| +...+..++..+...|++++|++.++++.+++|+++..+..++..+
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 112334445555556666666555554 2222 3334455555555556666666666666666666666555666666
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|++++|.+++
T Consensus 438 l~~~~~~~A~~~~ 450 (765)
T PRK10049 438 LDLQEWRQMDVLT 450 (765)
T ss_pred HHhCCHHHHHHHH
Confidence 6666666655543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1e-14 Score=158.37 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=114.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 252 FALNGKFEEAFDLLHEMQLMRSVEPDIA-TVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
..+.|+++.|++.|++..+ ..|+.. ....++..+...|+.++|...++..... -.........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 4577777888888887776 445542 2126666666667777777777776611 1112233333355677778888
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHH
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALM 410 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 410 (781)
+|.++|+++.+ .-+-+...+..++
T Consensus 120 ~Aiely~kaL~--------------------------------------------------------~dP~n~~~l~gLa 143 (822)
T PRK14574 120 QALALWQSSLK--------------------------------------------------------KDPTNPDLISGMI 143 (822)
T ss_pred HHHHHHHHHHh--------------------------------------------------------hCCCCHHHHHHHH
Confidence 88888887755 1112234445566
Q ss_pred HHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchH
Q 035828 411 HMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAF 488 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 488 (781)
..+...++.++|++.++++... |+...+..++..+...++..+|++.++++.+.. |+ ...+..++.++.+.|-..
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcH
Confidence 6777788888888888877443 554455444444444566666999999998853 54 455566777777777777
Q ss_pred HHHHHHHH
Q 035828 489 EGKSLHGL 496 (781)
Q Consensus 489 ~a~~~~~~ 496 (781)
.|.++...
T Consensus 221 ~a~~l~~~ 228 (822)
T PRK14574 221 PALRLAKE 228 (822)
T ss_pred HHHHHHHh
Confidence 77766554
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=4.9e-15 Score=160.99 Aligned_cols=349 Identities=11% Similarity=-0.005 Sum_probs=168.4
Q ss_pred hcCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhh
Q 035828 223 QCGDIEAAERAFWGMTCK------DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLRE 296 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 296 (781)
+..+++.---.|...++. +......++..+.+.|++++|+.+++...... .-+......+..+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHH
Confidence 444555444444444321 22334445666667777777777777776632 1122233333344445666666
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhc
Q 035828 297 GRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILP 376 (781)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~ 376 (781)
|...++.+.+..+. +...+..+...+...|++++|...+++...
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----------------------------------- 138 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWL----------------------------------- 138 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------
Confidence 66666666554322 344455555555556666666655555433
Q ss_pred ccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHH
Q 035828 377 SCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIK 456 (781)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 456 (781)
+.|+ +...+..+...+...|++++|..
T Consensus 139 ----------------------l~P~-------------------------------~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 139 ----------------------AFSG-------------------------------NSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred ----------------------hCCC-------------------------------cHHHHHHHHHHHHHCCChHHHHH
Confidence 1111 23334444444445555555555
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---
Q 035828 457 TFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--- 533 (781)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 533 (781)
.++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...++...
T Consensus 166 ~~~~~~~~~---P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 166 LARTQAQEV---PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 554444322 22111111111233444444444444444333211222222333444555566666655555443
Q ss_pred CCChhhHHHHHHHHHhCCChhH----HHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH
Q 035828 534 NCNLCTWNCMISAFSQNKAEVR----ALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS 607 (781)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 607 (781)
..+...+..+...+...|++++ |+..|++. ...|+ ...+..+...+...|++++|...++...+.. |+.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~--- 317 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDL--- 317 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC---
Confidence 1223445555556666666554 56666666 45554 2344444445555555555555555544432 211
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 608 SALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS-VISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 608 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
...+..+...+...|++++|++.++++.+ ..|+... +..+..++...|+.++|...|++.++.
T Consensus 318 ------------~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 318 ------------PYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11344555666666666666666666655 2343322 222344555566666666666666543
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=3.8e-14 Score=144.66 Aligned_cols=677 Identities=12% Similarity=0.017 Sum_probs=353.2
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhcCC----CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhH
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNK----DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTL 76 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 76 (781)
.|+.|+-.||..+|..|+..|+.+.|- +|.-|..+ +...++.++.+-.+.++.+.+. .|.+.||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 489999999999999999999999998 88766543 3345677777766777766664 5677778
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHh-------cC-----------------CCCcchhhhHHHHhhccCChhhHHHHhc
Q 035828 77 LIIVSALTQMNCLKQGRVVHCLSIKA-------GM-----------------IADSSLCNVFVNMYAKCGDLNSSECTFS 132 (781)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (781)
..|+.+|.++||+.....+-+.|... |+ -||. ...+....-.|-++-+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 88888887777766533333323221 11 0111 011111111122222222221
Q ss_pred cC---------------------------------C-CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHH
Q 035828 133 GM---------------------------------H-CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLS 178 (781)
Q Consensus 133 ~~---------------------------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 178 (781)
.+ . .++..+|.+++..-..+|+.+.|..++.+|++.|++.+.+-|.
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 11 1 3677888888888888899999999999999999988888777
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCCh
Q 035828 179 SAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKF 258 (781)
Q Consensus 179 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 258 (781)
.++-+ .++...+..+...|...|+.++ ..++..-+..+..+|....+... .+....+++-+.+-+-.|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~--seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg-- 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPG--SETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG-- 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCC--cchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--
Confidence 77766 7777888888888888888766 77877766666665553322221 112222222222222222
Q ss_pred hHHHHHH------------HHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCC---CChHHHHHHHHHH
Q 035828 259 EEAFDLL------------HEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLG---YDLLMMNSLMDFY 323 (781)
Q Consensus 259 ~~a~~~~------------~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~ 323 (781)
..|.+.+ .+-.-.| +......|.. ..-....|.-+.++++...+..-... .++..+..++.-|
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg-~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLG-TDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhc-cccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 1111111 1111112 2222222221 11122244455555555444422111 1223333333333
Q ss_pred Hhc----------------------CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhc------ccCCchhhhhhh
Q 035828 324 SKS----------------------NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLC------SQFSFSTLLAIL 375 (781)
Q Consensus 324 ~~~----------------------~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~~~~~~~~ll 375 (781)
.+. .+..+..++........+ ...+..-...++.+.- ..+-...-..++
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~---lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSF---LRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchH---HHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 322 112222222222111000 0000000000100000 001111223344
Q ss_pred cccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCcccHHHHHHHHHhCCC
Q 035828 376 PSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-----SDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~ 450 (781)
-.|++..+..++...-+.....-+. ..|..||+.++...+++.|..+.+++... -|..-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 4444444444444332222222111 56888999999999999999999988332 244557888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHh
Q 035828 451 FQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVF 529 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 529 (781)
...+..++.++.+.-...|+ ..++--++......|+.+...++++.+...|+.-+ ..++....+.++...|.+++
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~ 619 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP 619 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence 99999999999886423343 34556677888889999999999999998887653 44555566778888888877
Q ss_pred hhcCC---CCh---hhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHH---HHHhCC
Q 035828 530 ESCYN---CNL---CTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGH---VFHLGF 600 (781)
Q Consensus 530 ~~~~~---~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~ 600 (781)
+.... +.+ ..|..++.. -...+++.+..+ ..-+..|.+.|++..+..+.+. ..+.+-
T Consensus 620 e~~~qkyk~~P~~~e~lcrlv~k-e~td~~qk~mDl-------------s~~iq~f~k~g~~~~a~di~etpG~r~r~~R 685 (1088)
T KOG4318|consen 620 EPEEQKYKPYPKDLEGLCRLVYK-ETTDSPQKTMDL-------------SIPIQKFEKLGSCVDAGDITETPGVRCRNGR 685 (1088)
T ss_pred hHHHHHhcCChHHHHHHHHHHHh-hccccHHHHHhh-------------cchhHHHHhcccccchhhccccCcccccCCC
Confidence 65541 111 111111110 000111111110 0001113333333333333221 000000
Q ss_pred CCC-----chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHH
Q 035828 601 QEN-----SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVD 672 (781)
Q Consensus 601 ~~~-----~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~ 672 (781)
..+ ......++... .+......++..|.+.|+++.|..+|.+++ +.|+..+...|...+.+.. |+.
T Consensus 686 Dr~~de~e~~~lEll~elt---~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvP 759 (1088)
T KOG4318|consen 686 DRDTDEGEIVPLELLLELT---HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVP 759 (1088)
T ss_pred ccccccCccccHHHHHHHH---hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccch
Confidence 000 00000000000 011123336777888899999999999888 7888887777777776533 445
Q ss_pred HHHHHHHHhHHHcCCCCCcchH-HHHHHHhhhcCChH-HHHHHHHhCC--CCC-CcchHHHHHHHHHhcC
Q 035828 673 EGLQYYNNMLEEYDVRPETEHH-VCIVDMLGRSGKLQ-EAYEFIKNLP--IQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 673 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~-~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g 737 (781)
++....++..+.....|....+ .--+. +..+++.. -|.+.+.+.. .+| +...+..+++.+.+..
T Consensus 760 e~q~e~ekas~~~~~f~ttt~~~~~~a~-~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 760 EIQAETEKASELRTLFPTTTCYYEGYAF-FATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred hHHHHHHHHHhcccccccchHhhhhhHH-HHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 5555555543332222332222 22222 23334444 5667776652 222 4455666666655443
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.1e-14 Score=156.99 Aligned_cols=91 Identities=9% Similarity=-0.054 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhc
Q 035828 214 TNSLISMYSQCGDIEAAERAFWGMT--CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPD-IATVVTLISLCAD 290 (781)
Q Consensus 214 ~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~ 290 (781)
+...-..+.+.|+++.|++.|++.. .|+...|..+..+|.+.|++++|++.++...+ +.|+ ...+..+-.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 3445566777888888888887764 45667788888888888888888888888877 4454 4467777778888
Q ss_pred ccchhhhhhHHHHHHHh
Q 035828 291 SLLLREGRSVHGYAIRR 307 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~ 307 (781)
.|++++|..-+..+...
T Consensus 207 lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 207 LGKYADALLDLTASCII 223 (615)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888777655544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.1e-12 Score=135.23 Aligned_cols=619 Identities=12% Similarity=0.110 Sum_probs=347.4
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhcc---CCCCCeeehHHHHHHHhhCCChhhHHHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSG---MHCADTVSWNTIMSGCLHNNYPEKCLLY 161 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~ 161 (781)
-.|+.++|..++.+.+++. +.....|.+|-..|-..|+.+++...+-. +...|...|-.+-.-..+.|++.+|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3477777777777777664 45566677777777777777766665432 2233555666666666666777777777
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHH----HHHHHHHhcCChhHHHHHhccC
Q 035828 162 FREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTN----SLISMYSQCGDIEAAERAFWGM 237 (781)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~ 237 (781)
|.+..+.. +++...+.-=...|-+.|+...|..-+..+....++.+ ..-.- .+++.+...++-+.|.+.++..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 76665532 12222222233445566666666666666655543222 22222 2344455556667777666655
Q ss_pred CC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH--------------------------HHHHH
Q 035828 238 TC-----KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATV--------------------------VTLIS 286 (781)
Q Consensus 238 ~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~--------------------------~~ll~ 286 (781)
.. -+...++.++..+.+...++.+......+.... .++|..-+ ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~-~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE-SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc-cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 42 244557777777778888888777777666522 22222211 11222
Q ss_pred HHhcccchhhhhhHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcc
Q 035828 287 LCADSLLLREGRSVHGYAIRRLL--GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCS 364 (781)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 364 (781)
++.+.+..+....+...+.+.+. .-+...|.-+..+|.+.|++.+|.++|..+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----------------------- 442 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN----------------------- 442 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-----------------------
Confidence 23344444444445555555542 23455566666666666777776666666644
Q ss_pred cCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHH
Q 035828 365 QFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVI 442 (781)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 442 (781)
...--+..+|-.+..+|...|..++|...|+.... .| +...--.|.
T Consensus 443 --------------------------------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 443 --------------------------------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred --------------------------------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 22333455666666777777777777777766532 24 333444555
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC-------CCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhc--------------
Q 035828 443 VACTQNGHFQEAIKTFKSMTQQQ-------NASPDSVTLVNVISACGNLELAFEGKSLHGLALKSL-------------- 501 (781)
Q Consensus 443 ~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------- 501 (781)
..+-+.|+.++|++.++.+..-+ ...|+.....-....+.+.|+.++-..+...|+...
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 66677777777777777653111 133333333344444555666555444433333211
Q ss_pred --------CCCChHHHHHHHHHHHhcCChHHHHHHhhhc--------CCCChh----hHHHHHHHHHhCCChhHHHHHHh
Q 035828 502 --------MGLDTRVQNALITMYGRCRDIKSASTVFESC--------YNCNLC----TWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 502 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
.+........++.+-.+.++......-...- ..-.+. .+.-++.++++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1112222233334444443332222221111 011111 33456778899999999999988
Q ss_pred hc-C----CCCCHh--HHH-HHHHHhcccCchHHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 562 HL-E----FEPNEI--SIV-SILSACTQLGVLRHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 562 ~~-~----~~p~~~--~~~-~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.+ + ..++.. .+. ..+.++...+++..|...++.|+.. ++..++. -...||...+...+
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~-------------q~~l~n~~~s~~~~ 717 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY-------------QLNLWNLDFSYFSK 717 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH-------------HHHHHHHHHHHHHH
Confidence 87 2 233321 333 3455667889999999999888664 3332222 12256655555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH-HHHHHhhh------
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLL--SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV-CIVDMLGR------ 703 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~------ 703 (781)
.++-.--.+++..... ..|+......++ .-+...+.+.-|++.+-.+... .|+...++ .++.++..
T Consensus 718 ~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr~ 792 (895)
T KOG2076|consen 718 YGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQRR 792 (895)
T ss_pred HHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHH
Confidence 5554444444444433 233332222222 2334567888899988777644 67643333 23222221
Q ss_pred ----cCChHHHHHHHHhC---C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc------------hHHHH
Q 035828 704 ----SGKLQEAYEFIKNL---P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG------------YYISL 763 (781)
Q Consensus 704 ----~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~~l 763 (781)
.-..-+.+.++.+. . ....-.+.-.++++|...|=.-.|+.+|+++++..|.+.. +.++|
T Consensus 793 v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL 872 (895)
T KOG2076|consen 793 VSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNL 872 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhh
Confidence 11233445555444 2 1123456778999999999999999999999999865332 46789
Q ss_pred HHHHHhcCChhhHHhhcC
Q 035828 764 SNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~~ 781 (781)
..+|...|+...|.+|++
T Consensus 873 ~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 873 HLIYKKSGNMQLARQILE 890 (895)
T ss_pred hhhhccCCcHHHHHHHHH
Confidence 999999999999999863
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.9e-14 Score=160.11 Aligned_cols=363 Identities=12% Similarity=0.035 Sum_probs=261.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 400 SNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
..+.....-.+......|+.++|.+++.+... .| +...+..+...+...|++++|..+|++..+.. +.+......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34555666677778888999999999988754 33 34458888888999999999999999988742 2334445566
Q ss_pred HHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChh
Q 035828 478 ISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 554 (781)
...+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.. .+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 677888999999999999888763 33445 77788888999999999999988763 34456666777888889999
Q ss_pred HHHHHHhhcCCCCCHh------HHHHHHHHh-----cccCch---HHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCC
Q 035828 555 RALELFRHLEFEPNEI------SIVSILSAC-----TQLGVL---RHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 555 ~A~~~~~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 619 (781)
+|++.+++....|+.. ....++... ...+++ +.|.+.++.+.+. ...|+... .+..
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~~------- 238 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQR------- 238 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHHH-------
Confidence 9999998873355421 111222222 122234 6677788877754 33333211 0000
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cch
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIR-PTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEH 693 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~ 693 (781)
.+...+..+...|++++|+..|+++.+.+-. |+. ....+..++...|++++|...|+++.+. .|. ...
T Consensus 239 --a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~ 312 (765)
T PRK10049 239 --ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEE 312 (765)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHH
Confidence 1111123445779999999999999987532 433 2222567889999999999999998754 332 245
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC-------------Cc---chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNLP-IQP-------------KP---GVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
...+..++.+.|++++|.++++++. ..| +. ..+..+...+...|++++|+..++++.+..|++
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6667778899999999999998872 333 21 134456667888999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+..+..++.++...|+.++|+++++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999998763
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.5e-11 Score=121.76 Aligned_cols=449 Identities=10% Similarity=0.021 Sum_probs=220.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHH----HHhcCCCChHHHHHHHHHHHh
Q 035828 250 DGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYA----IRRLLGYDLLMMNSLMDFYSK 325 (781)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~ 325 (781)
-++++..-++.|..+++..++. ++-|...+.+-...--..|+.+.+.+++++- ...|+..+..-|-.=...+-.
T Consensus 414 lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3445555566666666666653 4445555555444445566666666655443 344666666666555555556
Q ss_pred cCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhH
Q 035828 326 SNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIG 405 (781)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 405 (781)
.|..-.+..+...... -|+... --..+
T Consensus 492 agsv~TcQAIi~avig--------------------igvEee---------------------------------d~~~t 518 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIG--------------------IGVEEE---------------------------------DRKST 518 (913)
T ss_pred cCChhhHHHHHHHHHh--------------------hccccc---------------------------------hhHhH
Confidence 6666555555555433 011000 00112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 483 (781)
+..--..|.+.+.++-|..+|....+ -| +...|...+..--..|..+....+|++.... ++-....+.......-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHh
Confidence 22222233333333333333333211 12 2333444444444445555555555555443 22222223233333344
Q ss_pred ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC--CChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 484 LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN--CNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
.|++..|..++..+.+.... +..+|.+-+.......+++.|+.+|.+... +....|.--+....-.++.++|+++++
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 45555555555555444322 445555555555555555555555554442 222344433444444555555555555
Q ss_pred hc-CCCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChHH
Q 035828 562 HL-EFEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKS-NAAWSSMISAYGYHGKGWE 638 (781)
Q Consensus 562 ~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 638 (781)
+. ...|+-.- |..+-..+...++++.|...|..=. ..||+ +..|-.+...-.+.|..-.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~------------------k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT------------------KKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc------------------ccCCCCchHHHHHHHHHHHhcchhh
Confidence 54 44454332 2222223334444444444332111 11111 1134445555555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 639 AIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 639 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|..++++.+-++ +-+...|...|+.-.+.|+.+.|..++.+.+++ -|+ ...|..-|.+..+.++-.++++.+++.
T Consensus 738 AR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 738 ARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred HHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 666666665432 224456666666666666666666666666654 333 455666666666666655556656555
Q ss_pred CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 718 PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 718 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
. -|+.+.-++...+....++++|..+++++++.+|+...++..+-.-+.+.|.-++-.+++
T Consensus 814 e--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 814 E--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred c--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 3 233344444445555566666666666666666666666666666666666555544443
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1e-13 Score=150.63 Aligned_cols=383 Identities=11% Similarity=0.028 Sum_probs=232.9
Q ss_pred CCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CcccHHHH--HHHHHhCCChHHHH
Q 035828 379 NSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNS-DTSCWNIV--IVACTQNGHFQEAI 455 (781)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l--i~~~~~~~~~~~A~ 455 (781)
.+.|+.+.|...+....+..-.-...++ .++..+...|+.++|...+++.. .| +...+..+ ...+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4679999999999888765433222344 88888889999999999999985 54 33334444 55788889999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC-
Q 035828 456 KTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN- 534 (781)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 534 (781)
++|+++.+.. +-+...+..+...+...++.++|...+..+.... |+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999864 2223455566777889999999999999887663 4455555555555556677679999998873
Q ss_pred -C-ChhhHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhH------HHHHHHHh-----cccCchHH---HHHHHHHHH
Q 035828 535 -C-NLCTWNCMISAFSQNKAEVRALELFRHL-E-FEPNEIS------IVSILSAC-----TQLGVLRH---GKQIHGHVF 596 (781)
Q Consensus 535 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~------~~~ll~~~-----~~~~~~~~---a~~~~~~~~ 596 (781)
| +...+..++.++.+.|-...|+++..+- + ..|...- ....+..- ....++.. |..-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 4567788889999999999999998877 3 4443321 11122111 11223333 333344433
Q ss_pred H-hCCCCCc-hH-HHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHH
Q 035828 597 H-LGFQENS-FI-SSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDE 673 (781)
Q Consensus 597 ~-~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 673 (781)
. .+..|.. .. ..+.++ .+.++...+++.++++.|+.|+..|.+....+-..+..+|...+++++
T Consensus 279 ~~~~~~p~~~~~~~~~~~D-------------rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 279 TRWGKDPEAQADYQRARID-------------RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred hhccCCCccchHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 3 2222321 11 122222 233455566666666666666665544333455566666666666666
Q ss_pred HHHHHHHhHHHcC----CCCCcchHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------------Ccc---hHHHHHHH
Q 035828 674 GLQYYNNMLEEYD----VRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQP-------------KPG---VWGAMLSA 732 (781)
Q Consensus 674 a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~---~~~~l~~~ 732 (781)
|..+++.+....+ ..++......|.-+|..++++++|..+++++. ..| ++. ....++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 6666666544311 01112223455666666666666666665552 112 111 11223444
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|++.+|++.++++....|.|+.....++.++..+|+..+|.+++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455666666666666666666666666666666666666666666554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.8e-12 Score=131.25 Aligned_cols=597 Identities=12% Similarity=0.062 Sum_probs=322.2
Q ss_pred ccCChhhHHHHhccCCC---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCC-CcchHHHHHHHhhccCChhHHHH
Q 035828 120 KCGDLNSSECTFSGMHC---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQA-DNVSLSSAVAASACLGELSYGKV 195 (781)
Q Consensus 120 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 195 (781)
..|++++|.+++.++.+ .+...|-+|...|-..|+.+++...+-.. ....| |..-|..+-......|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33888888888887753 35567888888888888888887665433 22223 33455555556666677777777
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCc----ccHHH----HHHHHHhCCChhHHHHHHHH
Q 035828 196 IHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDV----VSWNA----IIDGFALNGKFEEAFDLLHE 267 (781)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~----li~~~~~~~~~~~a~~~~~~ 267 (781)
.+..+++..+.. ...+---+..|-+.|+...|.+-|.++-+.+. .-... .++.+...++.+.|++.++.
T Consensus 229 cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 229 CYSRAIQANPSN---WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777665432 22222334455566666666665555532211 11111 23334444555555555555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeee
Q 035828 268 MQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVS 347 (781)
Q Consensus 268 m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (781)
....++-..+...++++...+.+...++.+......+.....++|..-+.+- - .+ ..-+......+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~-----~~~~~~~~~~~---- 371 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RR-----REEPNALCEVG---- 371 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hc-----cccccccccCC----
Confidence 5443223333344444444444444444444444443332222222111000 0 00 00000000000
Q ss_pred HHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCCHHHHHHH
Q 035828 348 WNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFS--NNTIGVNALMHMYINCGDLVAAFSL 425 (781)
Q Consensus 348 ~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~ 425 (781)
.++.++... ..+.-.+......+....+.+.+.+.... -+...|.-+.++|.+.|++.+|..+
T Consensus 372 --------------~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 372 --------------KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred --------------CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 112222222 12233344556666666677777777644 4567888899999999999999999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHH-HHHHHhcCccchHHHHHHHHHHH---
Q 035828 426 LQRISHNS---DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLV-NVISACGNLELAFEGKSLHGLAL--- 498 (781)
Q Consensus 426 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~--- 498 (781)
|..+...+ +...|--+..+|...|.+++|++.|+..... .|+..--. .|-..+.+.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99986654 5667888999999999999999999999884 46543322 33344667788888887777743
Q ss_pred -----HhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcC--CCCCHhH
Q 035828 499 -----KSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLE--FEPNEIS 571 (781)
Q Consensus 499 -----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~p~~~~ 571 (781)
..+..|...+.......+...|+.++-...-..|..+.. ....+ +- +-.++... ...+ ..-...+
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~--~~~~~--f~---~~~k~r~~-~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL--KKRYI--FP---RNKKKRRR-AIAGTTSKRYSEL 585 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHh--cc---hHHHHHHH-hhccccccccchh
Confidence 334455566655666667777776663333222211100 00000 00 00000000 0000 1122223
Q ss_pred HHHHHHHhcccCchHHHHHHHHHH-HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHV-FHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG 650 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 650 (781)
...+..+-.+.++......-...- ...+......+..... ..+.-+|..+++.+++++|+.+...+....
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf---------el~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF---------ELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 333333333333322221111100 0000000000000000 124556778899999999999999888754
Q ss_pred C--CCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 651 I--RPTK---SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 651 ~--~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
. .++. ..-...+.++...+++..|...++.|+..++...+ ...|+...+.+.+.++-.-=..++..+ ..+|
T Consensus 657 ~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 657 IFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 2 2222 12233445667889999999999999877554433 344554445555555433333444433 3344
Q ss_pred CcchHHHHH--HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 722 KPGVWGAML--SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 722 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+....-.++ .-...++.+.-|.+.+-+++...|++|-+...+|.++.+.
T Consensus 737 ~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 737 DDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred cCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 332222222 2245688999999999999999999999988888877643
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=1.4e-09 Score=108.30 Aligned_cols=470 Identities=12% Similarity=0.055 Sum_probs=246.8
Q ss_pred HHHHhhccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHHHHHHH----HhhcCCCCCcchHHHHHHHhhc
Q 035828 114 FVNMYAKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCLLYFRE----MGWSGEQADNVSLSSAVAASAC 186 (781)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 186 (781)
|.-+|++..-++.|..+++... ..+...|-+-...--.+|+.+...+++.+ +...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3344555555666666666553 23555565544444556666666666544 4455666666666555555554
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 035828 187 LGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLH 266 (781)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (781)
.|..-..+.+....+..|.+... --.||+.-...|.+.+.++-|..+|.
T Consensus 492 agsv~TcQAIi~avigigvEeed-------------------------------~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEED-------------------------------RKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred cCChhhHHHHHHHHHhhccccch-------------------------------hHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 44433333333333333332221 22356666666667777777777776
Q ss_pred HHHHcCCCCCC-HHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCe
Q 035828 267 EMQLMRSVEPD-IATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDL 345 (781)
Q Consensus 267 ~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (781)
...+ +.|. ...+......--..|..+....++...+..-.+ ....|-....-+-..||+..|+.++....+
T Consensus 541 ~alq---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~---- 612 (913)
T KOG0495|consen 541 HALQ---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFE---- 612 (913)
T ss_pred HHHh---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHH----
Confidence 6666 3333 334444444445566667777777766665332 334444555566667888888877776544
Q ss_pred eeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035828 346 VSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSL 425 (781)
Q Consensus 346 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 425 (781)
-...+...+-.-+.....+.+++.|..+
T Consensus 613 ----------------------------------------------------~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 613 ----------------------------------------------------ANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred ----------------------------------------------------hCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 0111223333444444555555666665
Q ss_pred HHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcCccchHHHHHHHHHHHHhcCC
Q 035828 426 LQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTL-VNVISACGNLELAFEGKSLHGLALKSLMG 503 (781)
Q Consensus 426 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (781)
|.+.... |+...|.--+...--.++.++|++++++..+. -|+..-+ ..+-+.+.+.++.+.|...|..=.+. ++
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 5554332 45555555555555556677777777666663 3443322 22222223333333333322211100 11
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccC
Q 035828 504 LDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLG 583 (781)
Q Consensus 504 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 583 (781)
-.+..|-.|.+.--+.|.+-.|+.+++...- -+|+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarl------------------------------kNPk--------------- 751 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARL------------------------------KNPK--------------- 751 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHh------------------------------cCCC---------------
Confidence 1223333333333333333333333333221 1221
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+...|-..|..-.+.|..+.|..+..+.++. ++.+...|..-|.
T Consensus 752 -----------------------------------~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 752 -----------------------------------NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred -----------------------------------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 2234555666666666666666666655543 4444556666665
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
...+.++-......+++. .-|+.....+...|....++++|.++|.+. +..|+ ..+|.-+......+|.-++
T Consensus 796 le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred hccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 555555544444444332 334445566666777777777777777665 44443 3466666666667777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHH
Q 035828 742 GKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
-.+++.+...-.|.....|.....
T Consensus 870 ~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 870 QKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHhccCCCCCcHHHHHhh
Confidence 777777777777776666655443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2.8e-12 Score=121.20 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=147.7
Q ss_pred hCCChhHHHHHHhhcCCCCCHhHHHHHHH---HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHH
Q 035828 549 QNKAEVRALELFRHLEFEPNEISIVSILS---ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSS 625 (781)
Q Consensus 549 ~~~~~~~A~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 625 (781)
.+|++++|.+.|++. +.-|.....+|.. .+...|++++|...|-.+..- -. .++...-.
T Consensus 502 ~ngd~dka~~~ykea-l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~---------------nn~evl~q 563 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEA-LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LL---------------NNAEVLVQ 563 (840)
T ss_pred ecCcHHHHHHHHHHH-HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HH---------------hhHHHHHH
Confidence 356666666666665 1122222122211 234456666666665443220 00 12224455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhc
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRS 704 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 704 (781)
+.+.|....+..+|++++.+.... ++.|+..+..|...|-+.|+-..|.++.-+- +..-| +..+..+|...|...
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhh
Confidence 667788889999999999877662 3446778888999999999999999988765 34555 478999999999999
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHh-cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH-HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.-+++|+..|+++ -++|+..-|..++..|.+ .|++.+|..+|+...+..|++...+..|..+....|
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999988 589999999999999865 899999999999999999999999999888876666
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=4.9e-15 Score=144.99 Aligned_cols=249 Identities=18% Similarity=0.206 Sum_probs=115.3
Q ss_pred HHHHHHHhcCChHHHHHHhhh-cC----CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccC
Q 035828 511 ALITMYGRCRDIKSASTVFES-CY----NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLG 583 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 583 (781)
.+...+.+.|++++|+++++. +. ..++..|..+.......++++.|...++++ ...| +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 345566677777777777743 22 223445555666666677788888888777 3333 23344445554 5777
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKSSVISLL 662 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~ 662 (781)
+++.|..++....+..-.| ..+..++..+...++++++.++++...... .+++...|..+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~------------------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDP------------------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccccccccccc------------------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 8888887776654433222 245667777889999999999999987533 345777888888
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCc
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDT 739 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 739 (781)
..+.+.|+.++|.+.+++.++. .|+ ......++..+...|+.+++.++++... .++++..+..+..++...|++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999876 776 6788899999999999999888887762 355677889999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
++|..+++++.+..|+|+.....++.++...|+.++|.++++
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999998863
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.2e-11 Score=118.51 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=165.5
Q ss_pred HHhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHH
Q 035828 547 FSQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWS 624 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 624 (781)
+.-.|+.-.|.+.|+.. ...|.... |.-+-..+....+.+.....|++..+.+..-.. +|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d-----------------vYy 398 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD-----------------VYY 398 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc-----------------hhH
Confidence 34467788888888887 55665444 777777888888899999999888876554222 333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
--...+.-.+++++|..=|++.++ +.|+ ...|-.+.-+..+.+++++++..|++..++ -|+ +..|+.....+.
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILT 473 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHh
Confidence 334444556889999999999988 6774 457888888888999999999999999876 454 688999999999
Q ss_pred hcCChHHHHHHHHhC-CCCCC---------cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 703 RSGKLQEAYEFIKNL-PIQPK---------PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
.++++++|.+.++.+ .+.|+ +.+-..++. ++-.+|...|+++++++.+++|....++..|+....++|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 999999999999976 44444 222222222 2235999999999999999999999999999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
.++|++++
T Consensus 553 i~eAielF 560 (606)
T KOG0547|consen 553 IDEAIELF 560 (606)
T ss_pred HHHHHHHH
Confidence 99999986
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.1e-12 Score=118.94 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=159.4
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCCcccHHHHHHHHHhCCChHHHHHH
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH--NSDTSCWNIVIVACTQNGHFQEAIKT 457 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 457 (781)
..|++++|.+.+.+.+...-.-....||+=+ .+-..|++++|++.|-.+.. ..+....-.+...|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4678888888888887665544445555433 35678999999999987622 24666677778888889999999999
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC
Q 035828 458 FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC 535 (781)
Q Consensus 458 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~ 535 (781)
+-+.... ++.|...+..|...|-+.|+...|.+.+-+--+ -++.+..+..-|..-|....-+++|+..|++.. +|
T Consensus 581 ~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9887664 566778888899999999999999888754432 356678888888888999999999999999765 89
Q ss_pred ChhhHHHHHHHH-HhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCc
Q 035828 536 NLCTWNCMISAF-SQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 536 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
+.+-|..++..| .+.|++.+|+++|+++ . ..-|...+..|++.|...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999988765 5689999999999999 3 66688888999999888774
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.9e-12 Score=127.05 Aligned_cols=245 Identities=13% Similarity=0.091 Sum_probs=121.3
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChh
Q 035828 477 VISACGNLELAFEGKSLHGLALKSLM--GLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 554 (781)
+-.+|-..+++++++.+|+.+.+... --+..+|++.+..+-+.=.+.---+-+-++....+.+|.++.++|..+++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 33444445555555555554443210 1144455555443332111111111111222334568888888888888888
Q ss_pred HHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.|+..|++. .+.| ...+|+.+-.-+...
T Consensus 439 ~Aik~f~RAiQldp~faYayTLlGhE~~~~-------------------------------------------------- 468 (638)
T KOG1126|consen 439 TAIKCFKRAIQLDPRFAYAYTLLGHESIAT-------------------------------------------------- 468 (638)
T ss_pred HHHHHHHHhhccCCccchhhhhcCChhhhh--------------------------------------------------
Confidence 888888887 6777 344554443333333
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
..+|.|...|..... +.|.. ..|..|...|.+.++++.|.-.|++++ .+.|. ......+...+.+.|+.|+|
T Consensus 469 -ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 469 -EEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred -HHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHH
Confidence 444555555544432 33322 134444445555555555555555543 34444 23444445555555555555
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
+++++++ ...| ++..--..+..+...+++++|.+.+|++.++-|++...+.++|.+|.+.|+.+.|+
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 5555554 2333 22223333334444555555555555555555555555555555555555555554
No 40
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-07 Score=98.53 Aligned_cols=594 Identities=12% Similarity=0.101 Sum_probs=360.3
Q ss_pred hhhHHHHhhccCChhhHHHHhccCCC--C-----CeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHH
Q 035828 111 CNVFVNMYAKCGDLNSSECTFSGMHC--A-----DTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAA 183 (781)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 183 (781)
+..+...|.+.|-..+|++.+..+.. + +...-. -+..|...-.++.+++.++.|...++.-|-.+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE-wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE-WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666777788888888887776642 1 111111 123455556788889999999888888887776666666
Q ss_pred hhccCChhHHHHHHHHHHHh-----------cCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------
Q 035828 184 SACLGELSYGKVIHALGIKL-----------GYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC------------- 239 (781)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------- 239 (781)
|...=-.+...++|+..... ++..+ +.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seD--pevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSED--PEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccC--chHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 65554455555666654422 23344 55666788999999999999999876530
Q ss_pred ------C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC----------CCCCHHHHH-------------HHH
Q 035828 240 ------K-----DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRS----------VEPDIATVV-------------TLI 285 (781)
Q Consensus 240 ------~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~~pd~~t~~-------------~ll 285 (781)
| |...|..=+-.|.-.++..+-+++|-+-...+. +.-+..... -+.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 1 222222222223333333333333322111100 111111111 122
Q ss_pred HHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-H--------HHHhhCCCCCee----eH----
Q 035828 286 SLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAE-L--------LFNAIAPMNDLV----SW---- 348 (781)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~--------~~~~~~~~~~~~----~~---- 348 (781)
.-+.+.+++..-..+++.....|.+ |..++|+|...|...++-.+-. + +..+..+++|+. .|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3334555666666777777777876 8899999999888765543321 0 011111111111 00
Q ss_pred --HHHHHH-----HHHHHHHhc-ccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCC
Q 035828 349 --NSMISG-----LFKEMLYLC-SQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFS--NNTIGVNALMHMYINCGD 418 (781)
Q Consensus 349 --~~ll~~-----l~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~ 418 (781)
..+|.. +++...+.- .+.|...+..++.- .-..-+++.+.....+++ .|+...+.-+.++...+-
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 011110 222111111 12333344444321 111123444555555543 356667777888888888
Q ss_pred HHHHHHHHHhhcCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 419 LVAAFSLLQRISHNSDTSC-----WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
..+-.++++.+.-.+++.+ -|.|+-...+. +..+..+..+++..- -.|+. ...+...+-+++|..+
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny--Da~~i------a~iai~~~LyEEAF~i 1070 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAPDI------AEIAIENQLYEEAFAI 1070 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC--CchhH------HHHHhhhhHHHHHHHH
Confidence 9999999998876665443 34444444443 455666666666443 23442 2334556677888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIV 573 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~ 573 (781)
|+.. ..+....+.|+. .-+.++.|.+.-+++.+|. .|+.+..+-.+.|...+|++-|-+. -|...|.
T Consensus 1071 fkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika---dDps~y~ 1137 (1666)
T KOG0985|consen 1071 FKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYL 1137 (1666)
T ss_pred HHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHH
Confidence 8754 334444555554 4567888988888887765 7999999999999999999988654 2556789
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
-++..+.+.|.+++-.+++.+..+..-.|.+. +.+|-+|++.++..+-.+++ .-|
T Consensus 1138 eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id------------------~eLi~AyAkt~rl~elE~fi-------~gp 1192 (1666)
T KOG0985|consen 1138 EVIDVASRTGKYEDLVKYLLMARKKVREPYID------------------SELIFAYAKTNRLTELEEFI-------AGP 1192 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhcCccch------------------HHHHHHHHHhchHHHHHHHh-------cCC
Confidence 99999999999999999999999888888764 45777778878776654432 456
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC----------------
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL---------------- 717 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------- 717 (781)
|......+..-|...|.++.|.-+|... ..|..|...+..-|++.-|.+--+++
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 7777777777777777777776666543 23566666666666666665554443
Q ss_pred ---------C--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 718 ---------P--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 718 ---------~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
| +--.+.-...++.-|...|-+++.+.+++..+.+.--+...+..|+-+|.+-
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 1 1112334556666677778888888888888888877788888888887754
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.6e-10 Score=110.23 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|+-|.+-|...++...|++-+....+ +.| |...|-.|.++|...+.+.-|+-+|++.. ..+|+ +..|..|.+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHH
Confidence 677788888888889999999988887 555 67788889999988888899999998886 45775 688899999
Q ss_pred HhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHhc
Q 035828 700 MLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK-------LEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~ 770 (781)
+|.+-++.++|++-++.. .-+.+...+..+...+.+.++.++|.+.+++-++ ..|+...+..-|+.-+.+.
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 999999999999888876 2233456788888888888999999999888887 3455556666688888888
Q ss_pred CChhhHHh
Q 035828 771 GRWKDAVE 778 (781)
Q Consensus 771 g~~~~A~~ 778 (781)
+++++|-.
T Consensus 521 ~~~~~As~ 528 (559)
T KOG1155|consen 521 KDFDEASY 528 (559)
T ss_pred cchHHHHH
Confidence 99988854
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=6.8e-11 Score=121.16 Aligned_cols=249 Identities=11% Similarity=0.056 Sum_probs=148.4
Q ss_pred HhcCChHHHHHHhhhcCCC--ChhhHH--HHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHH
Q 035828 517 GRCRDIKSASTVFESCYNC--NLCTWN--CMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
.+.|+.+.|...+.++.+. +..... .....+...|+++.|+..+++. +..|+ ...+..+...+.+.|+++.|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555555544421 111111 1134455566666666666666 45553 3344555556666677777777
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
++..+.+.+..++... ..+.. .+|..++.......+.+...++++...+. .+.+......+..++...|+
T Consensus 209 ~l~~l~k~~~~~~~~~-~~l~~--------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 209 ILPSMAKAHVGDEEHR-AMLEQ--------QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHHHcCCCCHHHH-HHHHH--------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 7766666554432211 10000 02333333334445556666666666442 34466677778888888888
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.++|.+.+++..+. .|+.... ++......++.+++++.+++. +..|+.. ....+.+.|...|++++|.+.+++
T Consensus 279 ~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877643 4444221 233334557888888887766 4455444 566777778888888888888888
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 749 LFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 749 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+.+..|++. .+..|+.++.+.|+.++|.++++
T Consensus 354 al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 354 ALKQRPDAY-DYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 888887754 46678888888888888877653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=8.1e-13 Score=129.35 Aligned_cols=223 Identities=16% Similarity=0.200 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCch
Q 035828 510 NALITMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVL 585 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~ 585 (781)
..+.......++.+.|...++.+...+ +..+..++.. ...+++++|.+++.+. ...++...+...+..+...+++
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHH
Confidence 333344444555555555555554222 2334444444 4666666666666555 3345555566666667777777
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSA 664 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 664 (781)
+.+..+++.+....-.++ +...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..
T Consensus 127 ~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWL 189 (280)
T ss_dssp HHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 777777777664222111 233677788888999999999999999998 5775 6678889999
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 742 (781)
+...|+.+++.++++...+. .+.++..+..+..+|...|++++|+.++++. ...| |+.....+..++...|+.++|
T Consensus 190 li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999988766 2445678889999999999999999999987 3344 677788999999999999999
Q ss_pred HHHHHHHhcc
Q 035828 743 KQVAELLFKL 752 (781)
Q Consensus 743 ~~~~~~~~~~ 752 (781)
.++.+++++.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999887754
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=9.5e-11 Score=120.88 Aligned_cols=254 Identities=9% Similarity=-0.039 Sum_probs=133.9
Q ss_pred hcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHH
Q 035828 481 CGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRAL 557 (781)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 557 (781)
....|+.+.+...+....+..-.+...........+...|+++.|...++.+.+ .+...+..+...+...|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 344444445444444443322111112222234445555666666655555542 23344555555566666666666
Q ss_pred HHHhhc-CC-CCCHhHHHHH-HHHh---cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHH
Q 035828 558 ELFRHL-EF-EPNEISIVSI-LSAC---TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYG 631 (781)
Q Consensus 558 ~~~~~~-~~-~p~~~~~~~l-l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 631 (781)
+++.+. +. .++...+..+ ..+. ...+..+.+...+..+.+....... .++..+..+...+.
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~-------------~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR-------------HNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh-------------CCHHHHHHHHHHHH
Confidence 666555 21 1222222110 0100 1111112222233333322211000 12335666777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-c--chHHHHHHHhhhcC
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSS---VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-T--EHHVCIVDMLGRSG 705 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g 705 (781)
..|++++|.+++++..+. .||... ...........++.+.+.+.+++..+. .|+ + ....++.+.+.+.|
T Consensus 275 ~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcc
Confidence 888888888888888773 344331 111112223346777777777777655 444 2 45667788888888
Q ss_pred ChHHHHHHHHh---CCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 706 KLQEAYEFIKN---LPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 706 ~~~~A~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
++++|.+.|+. ....|+...+.++...+.+.|+.++|.+++++....
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888873 246777777778888788888888888888876543
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.6e-08 Score=95.56 Aligned_cols=384 Identities=14% Similarity=0.091 Sum_probs=198.0
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHH
Q 035828 186 CLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT--CKDVVSWNAIIDGFALNGKFEEAFD 263 (781)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 263 (781)
+...+..|+.+++..+..-+..+ ..|-..+.+=-..|++..|.++|++-. +|+..+|++.|+.-.+-+.++.|..
T Consensus 119 knk~vNhARNv~dRAvt~lPRVd---qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVD---QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHH---HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444332222 223333333345688888888887754 7888888888888888888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHh-cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 264 LLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRR-LL-GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 264 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
+|++..- +.|+..+|..-.+.-.+.|.+..+..+++..++. |- ..+...+.+....=.++..++.|.-+|+-..+
T Consensus 196 IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 6788888888877777888888888888877754 21 11223333333333445556666665544332
Q ss_pred CCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHH
Q 035828 342 MNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSN-NTIGVNALMHMYINCGDLV 420 (781)
Q Consensus 342 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~ 420 (781)
.--+. ....|..+..---+-|+..
T Consensus 273 -------------------------------------------------------~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 273 -------------------------------------------------------HIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred -------------------------------------------------------hcCcccHHHHHHHHHHHHHHhcchh
Confidence 10000 0122222222222223322
Q ss_pred HHHHHH--------Hhh-cCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh-------hHHHHHHHh--
Q 035828 421 AAFSLL--------QRI-SHNS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-------TLVNVISAC-- 481 (781)
Q Consensus 421 ~a~~~~--------~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~-- 481 (781)
...+.. +.+ ..+| |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+|
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 222211 111 1223 5556666677777778888888888887765 555321 111111111
Q ss_pred -cCccchHHHHHHHHHHHHhcCCCChHHHHHHH----HHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChh
Q 035828 482 -GNLELAFEGKSLHGLALKSLMGLDTRVQNALI----TMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 482 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 554 (781)
....+++.+.++++..++ -++-...++.-+- ..-.+..++..|.+++.... -|....+...|..-.+.++++
T Consensus 376 Ele~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHH
Confidence 234455555555555554 1222222322221 22234455555555554433 223334444444444555555
Q ss_pred HHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.+..+|++. +..| +..++.-....=...|+.+.|..+|+..+......-+ ...|-+.|+.-..
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp---------------ellwkaYIdFEi~ 519 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP---------------ELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH---------------HHHHHHhhhhhhh
Confidence 555555555 4444 3334444333334455555555555555443221111 1145555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 035828 633 HGKGWEAIELFHEMCN 648 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~ 648 (781)
.|.++.|..+++++++
T Consensus 520 ~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 520 EGEFEKARALYERLLD 535 (677)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5555555555555554
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.4e-10 Score=118.83 Aligned_cols=283 Identities=11% Similarity=0.013 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHhhcCCC-Cccc-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHH--HHHHhcCccchHHHH
Q 035828 416 CGDLVAAFSLLQRISHNS-DTSC-WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVN--VISACGNLELAFEGK 491 (781)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~-~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~ 491 (781)
.|+++.|.+.+....... ++.. |-....+..+.|+++.|...|.++.+ ..|+...... ....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665542222 1222 22223333566667777777766655 3344432221 123344555555555
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCH--
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNE-- 569 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~-- 569 (781)
..++.+.+.. +-++.....+...|.+.|++++|.+++..+..... ..|+.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~---------------------------~~~~~~~ 225 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV---------------------------GDEEHRA 225 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC---------------------------CCHHHHH
Confidence 5555554443 22344445555555555555555555544442211 11110
Q ss_pred ----hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 035828 570 ----ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHE 645 (781)
Q Consensus 570 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 645 (781)
.+|..++.......+.+...++++.+.+.- +. ++.....+...+...|+.++|.+++++
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~----------------~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RH----------------QVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011122222222223333333333332211 11 122455667777888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc
Q 035828 646 MCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP 723 (781)
Q Consensus 646 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 723 (781)
..+ ..||.... ++.+....++.+++.+..+...+. .|+ +..+..+.+.+.+.|++++|.+.|++. ...|+.
T Consensus 289 ~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 289 GLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 877 34444222 233444568888888888888765 565 456778888889999999999888876 677888
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
..+..+...+.+.|+.++|.+.+++...+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888999999999998887654
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1.7e-10 Score=118.93 Aligned_cols=279 Identities=10% Similarity=-0.007 Sum_probs=192.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHhcCChHHHHHHhhhcCC--CCh--hhHHHHHHHHHhCCChhHHHH
Q 035828 484 LELAFEGKSLHGLALKSLMGLDTRV-QNALITMYGRCRDIKSASTVFESCYN--CNL--CTWNCMISAFSQNKAEVRALE 558 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~ 558 (781)
.|+++.|.+.+....+. .|++.. +-....++.+.|+.+.|.+.+++..+ |+. ...-.....+...|+++.|+.
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444333 233222 23445677888999999999988642 332 233335777889999999999
Q ss_pred HHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 035828 559 LFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKG 636 (781)
Q Consensus 559 ~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 636 (781)
.++++ ...|+ ...+..+...+...|+++.|.+.+..+.+.+..+.......-.. .+..+ ...+..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~---------a~~~~----l~~~~~ 241 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK---------AEIGL----LDEAMA 241 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---------HHHHH----HHHHHH
Confidence 99999 67774 45677888899999999999999999999876543321111000 11111 222333
Q ss_pred HHHHHHHHHHHhCC---CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcch---HHHHHHHhhhcCChHHH
Q 035828 637 WEAIELFHEMCNSG---IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEH---HVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 637 ~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A 710 (781)
+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+.+++.++. .|+... .....-.....++.+++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHH
Confidence 33344555555431 1237778888999999999999999999999865 565431 11122222445788888
Q ss_pred HHHHHhC-CCCCCc---chHHHHHHHHHhcCCcHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 711 YEFIKNL-PIQPKP---GVWGAMLSACSHHGDTKMGKQVAE--LLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 711 ~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
.+.+++. +..|+. ....++.+.+.+.|++++|.+.++ .+.+..|++.. +.+|+.++.+.|+.++|.++|+
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 8888776 455654 466799999999999999999999 57677776554 6699999999999999999874
No 48
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.1e-09 Score=98.96 Aligned_cols=319 Identities=13% Similarity=0.094 Sum_probs=191.4
Q ss_pred HHHHhcCCHHHHHHHHHhhcC-CCCcccHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC--ccc
Q 035828 411 HMYINCGDLVAAFSLLQRISH-NSDTSCWNIVI-VACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN--LEL 486 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~~~ 486 (781)
......-.+++|.++++++.. .|.....|..+ -+|.+..-++-+.++++--.+. .||+.. ..=+.+|.. .=.
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdSti-A~NLkacn~fRl~n 234 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTI-AKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHH-HHHHHHHHHhhhhc
Confidence 333444568899999998744 36666666544 5677888888888888887774 366433 222333322 111
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-----CChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 487 AFEGKSLHGLALKSLMGLDTRVQNALITMYGRC-----RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
-..|.+-...+.+.+-+. -..+.-.++. ..-+.|++++-.+...-+.+--.++-.|.+.+++.+|..+..
T Consensus 235 gr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred cchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 122222222232222111 1112222221 233456665544332222233345566889999999999999
Q ss_pred hc-CCCCCHhHHHHHHHHhc-----ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC
Q 035828 562 HL-EFEPNEISIVSILSACT-----QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK 635 (781)
Q Consensus 562 ~~-~~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 635 (781)
++ ...|-......+..+.. ......-|.+.|+..-..+..-|... --.++...+--..+
T Consensus 310 dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp---------------GRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 310 DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP---------------GRQSMASYFFLSFQ 374 (557)
T ss_pred hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc---------------chHHHHHHHHHHHH
Confidence 98 47776666665555432 22345667788887766665554432 23445555556677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIK 715 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (781)
+++++-.+.....-=...|.+.|| +..+.+..|++.+|.++|-.+... .++-+......|.++|.+.|+.+-|.+++-
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 888887777777643334444444 667888888888888888776422 222223344567788888888888888887
Q ss_pred hCCCCCCcch-HHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 716 NLPIQPKPGV-WGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 716 ~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
++.-+.+..+ ...+.+.|.+.+++=-|.+.++.+..++|.
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7753333333 444556688888888888888888877765
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.2e-11 Score=123.63 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
.+.+|.++.++|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ ++.|. -..|.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHHHh
Confidence 344899999999999999999999999988 777 66799999888999999999999999886 55665 356667
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+.-.|.+.++++.|.-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-+..+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 888999999999999999988 6677 45567777888889999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 575 eal~~L 580 (638)
T KOG1126|consen 575 EALQEL 580 (638)
T ss_pred HHHHHH
Confidence 999875
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=2.8e-09 Score=102.09 Aligned_cols=378 Identities=13% Similarity=0.089 Sum_probs=242.8
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCc-ccHHHHHHHHHhCCChHHHHHH
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-SDT-SCWNIVIVACTQNGHFQEAIKT 457 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~ 457 (781)
.++++..|.++|+..+... ..+...+-..+.+-.++..+..|..++++...- |.+ ..|--.+..--..|+...|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666777777666544 445555666666666677777777777765322 321 2333344444455677777777
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---
Q 035828 458 FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN--- 534 (781)
Q Consensus 458 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 534 (781)
|++-.+ ..|+...+.+.++.-.+...++.|..+++...-. .|+...|--..+.--+.|....|..+++...+
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 777665 5577777777777766677777777777666543 36666666666666667777777777665441
Q ss_pred C---ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH---hHHHHHHHHhcccCchHHHHHHH---HHHH-HhCCCCC
Q 035828 535 C---NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE---ISIVSILSACTQLGVLRHGKQIH---GHVF-HLGFQEN 603 (781)
Q Consensus 535 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~---~~~~-~~~~~~~ 603 (781)
. +...+.++..--.+++.++.|.-+|.-. +.-|.. ..|.....-=-+-|+........ ..+. +..+..+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 1123333333334455566666666554 323322 22222222222223332222111 1110 0111111
Q ss_pred chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHh---cccCcHHH
Q 035828 604 SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-------SVISLLSAC---SHSGLVDE 673 (781)
Q Consensus 604 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~---~~~~~~~~ 673 (781)
+. |-.+|--.++.....|+.+...++|++...+ ++|-.. .|.-+=.+| ....|.+.
T Consensus 319 p~-------------nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 319 PY-------------NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred CC-------------CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11 2336777778888889999999999999975 666321 232222233 34689999
Q ss_pred HHHHHHHhHHHcCCCCCc-chHH----HHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHH
Q 035828 674 GLQYYNNMLEEYDVRPET-EHHV----CIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAE 747 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p~~-~~~~----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (781)
+.++++..++ +.|.. .++. ..+....++.++..|.+++..+ |.-|...++...+..-.+.++++....+|+
T Consensus 385 tr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999874 57763 4444 3444456889999999999876 889999999999999999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 748 LLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 748 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.++-+|++-.++...+.+-...|+++.|+.|+
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999875
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.2e-09 Score=100.78 Aligned_cols=324 Identities=10% Similarity=0.067 Sum_probs=211.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHH--
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLV-- 475 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~-- 475 (781)
+...|...+-..-..+.+.|....|.+.|..... .-+..|.+-+....-..+.+.+ ...... ...|...+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~----~~l~~~--l~~~~h~M~~~ 231 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEIL----SILVVG--LPSDMHWMKKF 231 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHH----HHHHhc--CcccchHHHHH
Confidence 4444444444444455667788888887776622 2233344433322222222222 222211 222222111
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhH
Q 035828 476 NVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.+..++....+.+++..-...+...|++.+...-+....+.-...+++.|..+|+++...|+.-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--------------- 296 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc---------------
Confidence 13334445556666666666667777766666655555556666777777777777765443200
Q ss_pred HHHHHhhcCCCCCHhHHHHHHHHhcccCch-HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcC
Q 035828 556 ALELFRHLEFEPNEISIVSILSACTQLGVL-RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHG 634 (781)
Q Consensus 556 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 634 (781)
-|..+|+.++-.-.....+ -.|..+ ..-..++|. |..++.+-|.-.+
T Consensus 297 -----------~dmdlySN~LYv~~~~skLs~LA~~v---~~idKyR~E------------------TCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 297 -----------DDMDLYSNVLYVKNDKSKLSYLAQNV---SNIDKYRPE------------------TCCIIANYYSLRS 344 (559)
T ss_pred -----------hhHHHHhHHHHHHhhhHHHHHHHHHH---HHhccCCcc------------------ceeeehhHHHHHH
Confidence 0222333322221110000 001111 111223332 5566777788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYE 712 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 712 (781)
++++|...|++..+ +.|.. ..|+.+.+-|...++...|.+.++.++ .+.|. -..|..|.++|.-.+...=|+-
T Consensus 345 eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 345 EHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred hHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 99999999999998 56654 478888888999999999999999987 45674 6899999999999999999999
Q ss_pred HHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 713 FIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 713 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|+++ .++| |...|.+|+..|.+.++.++|+.-+.++...+.-+..++..|+.+|.+.++..+|.+.+
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99988 5666 67789999999999999999999999999999888999999999999999999998754
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5e-09 Score=102.98 Aligned_cols=253 Identities=10% Similarity=0.091 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHh
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSAC 579 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 579 (781)
+..+.....+-+-..+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.++ ...| ...+|-++--.|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 444444445555556666666666666554333 23444455566666666555555555 4444 344555555555
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVI 659 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 659 (781)
.-.|..++|++.|.+....+..-.+ .|-.....++-.+..++|+..+...-+. ++-...-+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgp-----------------aWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~L 384 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGP-----------------AWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSL 384 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccH-----------------HHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHH
Confidence 5556677777776665443332222 4666777777777777777766655442 111111223
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC-----CCC----CcchHHHH
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP-----IQP----KPGVWGAM 729 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l 729 (781)
-+.--|.+.++.+.|.++|.+.. ++-|+ +..+..+.-.....+.+.+|..+|+... +.+ -.++++.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 33345666677777777777665 44554 4556666666666777777777766541 111 12346666
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+.++++.+.+++|+..+++++.+.|.++.++..+|.+|...|+++.|++
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 7777777777777777777777777777777777777777777777765
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.9e-09 Score=103.73 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=130.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChH
Q 035828 445 CTQNGHFQEAIKTFKSMTQQQNASPDSVT-LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIK 523 (781)
Q Consensus 445 ~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 523 (781)
+.-.|+.-.|.+-|+..+... |.... |-.+-..|...++.++....|+...+.+.. ++.+|..=..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 344677778888888877754 32222 555555566666666666666666654432 4444444444455555666
Q ss_pred HHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC
Q 035828 524 SASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGF 600 (781)
Q Consensus 524 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 600 (781)
+|..-|++...- ++..|-.+-.+.-+.+++++++..|++. ++.=.
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~--------------------------------kkkFP 459 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA--------------------------------KKKFP 459 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHhCC
Confidence 666666655422 2334444444444555555555555554 33211
Q ss_pred CCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHhcccCcH
Q 035828 601 QENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT---------KSSVISLLSACSHSGLV 671 (781)
Q Consensus 601 ~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---------~~~~~~l~~~~~~~~~~ 671 (781)
. .+..|+-....+...+++++|.+.|+...+ +.|+ ......++-.-. .+++
T Consensus 460 ~-----------------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~ 519 (606)
T KOG0547|consen 460 N-----------------CPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDI 519 (606)
T ss_pred C-----------------CchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhH
Confidence 1 112455566667777888888888887766 4443 112222221212 3789
Q ss_pred HHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 672 DEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..|.+++.+.. .++|.. ..|..|...-.+.|+.++|+++|++.
T Consensus 520 ~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999886 568874 78999999999999999999999875
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=4e-09 Score=99.40 Aligned_cols=251 Identities=12% Similarity=0.019 Sum_probs=161.3
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.+....|+.+.+..++.++.+.--.++....-+..+.....|+.+.|..-++... ..++.......++|.+.|++.+
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 3334444444444444444443333344444444444455555555544444322 3344455555555555555555
Q ss_pred HHHHHhhc---C-CCC------CHhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhHH
Q 035828 556 ALELFRHL---E-FEP------NEISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAWS 624 (781)
Q Consensus 556 A~~~~~~~---~-~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 624 (781)
.+.++.++ + ..+ ...++..++.-+...+..+.-...|+...+ ..-.|. .-.
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~------------------l~~ 267 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE------------------LVV 267 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh------------------HHH
Confidence 55555555 2 111 123556666666555555555555655433 222222 234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
+++.-+...|+.++|.++..+..+++..|.- .. .-.+.+-++.+.=.+..++..+.++..| ..+.+|...|.+.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~ 341 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHh
Confidence 4556677889999999999999888877772 22 2366778888888888888877755555 7788999999999
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+.|.+|.+.|+.. +..|+...|..+..++.+.|+++.|.+..++.+...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 342 KLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999976 789999999999999999999999999999988543
No 55
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.33 E-value=1.3e-06 Score=88.79 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=79.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH---------------HcCCCCC-
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLE---------------EYDVRPE- 690 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~p~- 690 (781)
...+...|..+.|.+++--.- .-...|.++++...|.+|.++-++..- ..| +.+
T Consensus 1220 ~~al~~~~~~e~aael~l~f~---------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lkneg-kl~e 1289 (1636)
T KOG3616|consen 1220 GGALDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEG-KLDE 1289 (1636)
T ss_pred chhhhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccC-cccc
Confidence 334445555666655543221 122346677777777777776665421 101 111
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHH-HHhcCCcHHHHHHHHHHhcc-CCCCCchHHHHHH
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSA-CSHHGDTKMGKQVAELLFKL-EPENVGYYISLSN 765 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~ 765 (781)
..-.-.-++.+..+++|++|++.-++-..+|-..-|-++..+ +.+.|+...|..++++--.- +|.+..+|-.+..
T Consensus 1290 li~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1290 LIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred ccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 011224567889999999999988877777765555555444 45789999999999886543 4777777766543
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-08 Score=99.93 Aligned_cols=273 Identities=13% Similarity=0.041 Sum_probs=155.8
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+.- +-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 44445555666777888889999998888874 3444444445556666666655555545554432 22455566665
Q ss_pred HHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-----C-CCCCHhHHHHHHHHhcccCc
Q 035828 514 TMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-----E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-----~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
--|.-.|+..+|++.|.+...-|. ..|-.+..+|+-.|..+.|+..+... | ..|.- .
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L----Y---------- 385 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL----Y---------- 385 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH----H----------
Confidence 556666777777777776654333 46777777777777777777766555 2 22211 1
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLS 663 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 663 (781)
+.--|.+.+...-|.++|.+... +.| |+..++-+.-
T Consensus 386 -----------------------------------------lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 386 -----------------------------------------LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGV 422 (611)
T ss_pred -----------------------------------------HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhh
Confidence 11223445555556666555554 334 3344444444
Q ss_pred HhcccCcHHHHHHHHHHhHHHcC-C---CC-CcchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYD-V---RP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 736 (781)
.....+.+.+|..+|+..+.... + ++ ...+++.|..+|-+.+++++|+..+++. . .+.+..++.+++-.+...
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 44445566666666665542200 0 01 1234556666666666666666666654 2 233445555555555666
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
|+.+.|...+.+++.+.|++..+-..|+.+
T Consensus 503 gnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred cChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 666666666666666666665555555544
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.2e-09 Score=110.82 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC--C--
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN-----SGIR-PTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP--E-- 690 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~-- 690 (781)
+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|...+++++|..++++..+.+...| +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 455555556666666666555554432 1222 222 2466666778888999999999998877654222 2
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhcc----CC
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKL----EP 754 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p 754 (781)
..++..|...|...|++++|.++++++ +..+. ...++.+...|...++++.|.+++++...+ .|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999998876 12333 457888999999999999999999888764 34
Q ss_pred CC---CchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 EN---VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~---~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++ ...|.+|+.+|.+.||+++|.++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44 456889999999999999999874
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.9e-08 Score=92.81 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhc-ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACS-HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
.|.-|+.+|...|++.+|.-+-...... +..+..+...+. ..|. ...--++|.+++++-+ .+.|+ ......+.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHH
Confidence 5777888888888888888776655542 333455555442 3332 2334589999999876 56888 46778888
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
..+...|++++++.++++. ...||....+.+.+.+...+.+.+|...|..+++++|++..+...|-.+--.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999986 6889999999999999999999999999999999999999888777665443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=3.2e-06 Score=84.96 Aligned_cols=546 Identities=14% Similarity=0.096 Sum_probs=280.6
Q ss_pred cchhhhHHHHhhccCChhhHHHHhccCC-----CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHH
Q 035828 108 SSLCNVFVNMYAKCGDLNSSECTFSGMH-----CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVA 182 (781)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 182 (781)
+..|-..+..+.+.|++......|+... ......|...+.-.-..+-++-++.++++..+ .++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 5667777888888899998888887652 23566788888888888999999999998865 33334566677
Q ss_pred HhhccCChhHHHHHHHHHHHhcC----CCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCC--C--cccHHHHHHH
Q 035828 183 ASACLGELSYGKVIHALGIKLGY----EDSPYVSVTNSLISMYSQCGDI---EAAERAFWGMTCK--D--VVSWNAIIDG 251 (781)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~li~~ 251 (781)
.++..+++++|.+.+...+.... ....+...|.-+.+..++.-+. -....+++.+..+ | -..|.+|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 77788888887777766653321 1111255566655555554322 2233344444322 2 2457777788
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHH-HhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 252 FALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAI-RRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
|.+.|.+++|.++|++-... .....-|+.+.++|+.-.....+..+ +... +.+-+-+ .-+++
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed-------------~~dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEED-------------DVDLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhh-------------hhhHH
Confidence 88888888888888776652 34444555555555432211111111 0000 0010001 11222
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcc-cCCCcchhhhHHHHHHHHHhcCCC------ch
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPS-CNSPESLEFGKSIHCWQLKLGFSN------NT 403 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~------~~ 403 (781)
-...-|+.+...++...-+.+++ -|.......++. -...++..+-...+.++.+. +.| -.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLR------------Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLR------------QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHh------------cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 23333333333111111111111 111111111111 12234455555556555542 122 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCC--Cc----ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-------
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNS--DT----SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD------- 470 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~------- 470 (781)
..|..+.+.|-..|+++.|..+|++...-| .+ .+|-.-...-.++.+++.|+++.++...-. ..|.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCC
Confidence 457778888899999999999999884432 11 235555555667788899998888775421 1111
Q ss_pred ----------hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC----CCC
Q 035828 471 ----------SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY----NCN 536 (781)
Q Consensus 471 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~ 536 (781)
...|...++.-...|-++..+.+++.+++..+- ++.+.-.....+-...-++++.+++++-. .|+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112333334444455666666666666665543 22222222223334445566666666443 334
Q ss_pred h-hhHHHHHHHHHh---CCChhHHHHHHhhc--CCCCCHhHHHHHHHHh--cccCchHHHHHHHHHHHHhCCCCCchHHH
Q 035828 537 L-CTWNCMISAFSQ---NKAEVRALELFRHL--EFEPNEISIVSILSAC--TQLGVLRHGKQIHGHVFHLGFQENSFISS 608 (781)
Q Consensus 537 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 608 (781)
+ ..|+.-+.-+.+ ...++.|..+|++. +..|...-+..|+-+- .+.|-...|..++++.... +.+...
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~--- 621 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR--- 621 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH---
Confidence 3 245554443332 23466666666666 3555443333333221 2335555566666553322 221111
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HhcccCcHHHHHHHHHHhHHHc
Q 035828 609 ALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS---ACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 609 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
...||+.|.--+..=-......+|++..+ .-||...-...++ .-++.|..+.|..++..--+-
T Consensus 622 -----------l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~- 687 (835)
T KOG2047|consen 622 -----------LDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI- 687 (835)
T ss_pred -----------HHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-
Confidence 01355555444443344444555555555 2444443333322 223456666666666554332
Q ss_pred CCCCC--cchHHHHHHHhhhcCChH
Q 035828 686 DVRPE--TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 686 ~~~p~--~~~~~~l~~~~~~~g~~~ 708 (781)
.+|. ...|.+.=..-.+.|+-+
T Consensus 688 -~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 688 -CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred -CCCcCChHHHHHHHHHHHhcCCHH
Confidence 2332 345555555556666633
No 60
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=9.2e-07 Score=89.74 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 414 INCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
...|+++.|..-|-+. ...--.+.+-....++.+|+.+++.+.++. ....-|..+.+.|+..|+++.|.++
T Consensus 717 ~~~~q~daainhfiea------~~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEA------NCLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHhHHHHHHHHHHh------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHH
Confidence 3445555555544433 111223455566778888888888877643 4445667777888888888888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC--hhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN--LCTWNCMISAFSQNKAEVRALELFRHLEFEPNEIS 571 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~ 571 (781)
|.+. ..++..|.+|.+.|+|++|.++-+++-.|. ++.|-+-..-+-.+|++.+|.++|-.+| .|+.
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-- 855 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-- 855 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH--
Confidence 7543 234567788888888888888887776443 3456555566777888888877775552 3332
Q ss_pred HHHHHHHhcccCchHHHHHHHH
Q 035828 572 IVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
.|..|-+.|..+...++.+
T Consensus 856 ---aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHH
Confidence 2344555555555555443
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.4e-08 Score=95.84 Aligned_cols=276 Identities=12% Similarity=0.098 Sum_probs=199.0
Q ss_pred cCCHHHHHHHHHhhcCCCCccc--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 416 CGDLVAAFSLLQRISHNSDTSC--WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
.|++..|+++..+-....+..+ |-.-+.+--..|+.+.+-.++.+..+.. -.++...+....+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5777777777766533333333 3334455566777777777777776642 234444445555556777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh-----------hhHHHHHHHHHhCCChhHHHHHHhh
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL-----------CTWNCMISAFSQNKAEVRALELFRH 562 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~ 562 (781)
.+.+.+.+.. .+.+.....++|.+.|++.....++..+.+.+. .+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666543 455666777888888888888888877775433 3777777777666666666667777
Q ss_pred c--CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHH
Q 035828 563 L--EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 563 ~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
. ..+-+.....+++.-+..+|+.++|.++..+..+.+..|+... .-...+-++.+.-+
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--------------------~~~~l~~~d~~~l~ 314 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--------------------LIPRLRPGDPEPLI 314 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--------------------HHhhcCCCCchHHH
Confidence 7 3555666667788888999999999999999999888877321 11235667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 641 ELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+..+...+. .+-++..+.+|.+-|.+.+.|.+|.+.|+..+ ...|+..+|..+.++|.+.|+..+|.+..++.
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777776653 33344788889999999999999999999876 55999999999999999999999999988765
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.8e-11 Score=82.62 Aligned_cols=50 Identities=40% Similarity=0.622 Sum_probs=44.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 240 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
||+.+||++|.+|++.|++++|+++|++|.+.| +.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 678889999999999999999999999999888 99999999999988874
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=4.3e-07 Score=93.19 Aligned_cols=374 Identities=15% Similarity=0.138 Sum_probs=210.4
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhH
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN--SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTL 474 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~ 474 (781)
.+.-+..+|..|.-++...|+++.+.+.|++...- .....|..+...+...|....|+.+++.-.... -.|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHH
Confidence 34456667777777777777777777777766332 244557777777777777777777777655533 12332 223
Q ss_pred HHHHHHh-cCccchHHHHHHHHHHHHh--cC--CCChHHHHHHHHHHHhc-----------CChHHHHHHhhhcCCC---
Q 035828 475 VNVISAC-GNLELAFEGKSLHGLALKS--LM--GLDTRVQNALITMYGRC-----------RDIKSASTVFESCYNC--- 535 (781)
Q Consensus 475 ~~ll~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~--- 535 (781)
...-+.| .+.+.++++..+-.++++. +. ...+..+..+--+|... ....++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222333 3445556665555555441 11 11222232222223211 1123445555555322
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CC--CCCHhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCc-------
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EF--EPNEISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENS------- 604 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~------- 604 (781)
|+.+---+.--|+..++.+.|++..++. .+ .-+...+..|.-.+...+++.+|..+.+.... .|.....
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2211111222355566677777776666 33 33445555555566666667777666655332 2221000
Q ss_pred -----------hHHHHHHHhhhcC---------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 605 -----------FISSALLDMYSNC---------------------------KSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 605 -----------~~~~~l~~~~~~~---------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.+...++..+-.. ....++..+..... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-c
Confidence 0000111111100 00001111111110 00000000000 1
Q ss_pred HhCCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGIRPTK--------SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
...-+.|.. ..|......+.+.++.++|...+.+.. ++.|- ...|......+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 111122221 134455567778889999998888875 44554 578888889999999999999988766
Q ss_pred -CCCCC-cchHHHHHHHHHhcCCcHHHHH--HHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 718 -PIQPK-PGVWGAMLSACSHHGDTKMGKQ--VAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 718 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.+.|+ +.+..++...+...|+...|.. ++..+.+++|.++.+|+.||.++.++|+.++|.+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 56775 5578888888999999999999 9999999999999999999999999999999865
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=6.8e-10 Score=106.43 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 700 (781)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+. ...| ....+..+...
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHH
Confidence 34455555666677777777777666532 223445566666666777777777777776643 1122 23456666777
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++...|+.++|.+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777665 3333 344566677777777778888777777777777777777777777777777777766
Q ss_pred h
Q 035828 779 I 779 (781)
Q Consensus 779 l 779 (781)
+
T Consensus 225 ~ 225 (234)
T TIGR02521 225 Y 225 (234)
T ss_pred H
Confidence 5
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.5e-11 Score=81.92 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH 667 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 667 (781)
||+.+||++|.+|++.|++++|.++|++|++.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56779999999999999999999999999999999999999999999975
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=6.5e-06 Score=82.79 Aligned_cols=530 Identities=13% Similarity=0.113 Sum_probs=287.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
...|-.+=++ ++.++..++.|+ ..|-..+..+..+|++......|+.....-.+.--...+...+.....
T Consensus 81 ~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~ 150 (835)
T KOG2047|consen 81 DPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVES 150 (835)
T ss_pred ChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh
Confidence 4455544433 345566666665 356666677777888888888887776643344445566777777777
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchh
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFST 370 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 370 (781)
.+-++.+.++++.-.+- ++..-+-.|..++..+++++|.+.+..+.... .... ...+.+...
T Consensus 151 ~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d-~f~s-------------k~gkSn~ql 212 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQD-EFVS-------------KKGKSNHQL 212 (835)
T ss_pred CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCch-hhhh-------------hcccchhhH
Confidence 77777777777776654 33445667777888888888888887776511 0000 000111111
Q ss_pred hhhhhcccCCCcchhhhHHHHHHHHHhcC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHH
Q 035828 371 LLAILPSCNSPESLEFGKSIHCWQLKLGF--SNN--TIGVNALMHMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVAC 445 (781)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~ 445 (781)
+..+....++..+.-.... .+.+.+.|+ -+| ...+++|.+.|.+.|.++.|.++|++.... -.+.-|..+..+|
T Consensus 213 w~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHH
Confidence 1111111111111111111 112222233 233 356889999999999999999999876444 3444455444444
Q ss_pred HhC----------------C------ChHHHHHHHHHHHHcCCCCCCh----------hhHHHHHHHhcCccchHHHHHH
Q 035828 446 TQN----------------G------HFQEAIKTFKSMTQQQNASPDS----------VTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 446 ~~~----------------~------~~~~A~~~~~~m~~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
+.- + +.+-.+..|+.+...++.-.|. .++..-+ -...|+..+....
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHH
Confidence 321 1 1233344445444433221111 1121111 1234556666666
Q ss_pred HHHHHHhc-----CCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh-------hhHHHHHHHHHhCCChhHHHHHHh
Q 035828 494 HGLALKSL-----MGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL-------CTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 494 ~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
+.++++.- +..-...|..+.+.|-..|+++.|+.+|+....-+- .+|..-...-.++.+++.|+++.+
T Consensus 370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77665421 122345678889999999999999999998764332 356666666678899999999998
Q ss_pred hcC---CCCC-----------------HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHH--HHH--------
Q 035828 562 HLE---FEPN-----------------EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISS--ALL-------- 611 (781)
Q Consensus 562 ~~~---~~p~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~-------- 611 (781)
+.- -.|. ...+...++.-...|-++....+++.+++..+.....+-| .++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 871 1111 1123334444455678888899999988876654333222 111
Q ss_pred --HhhhcC------CChh-hHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcccCcHHHHHHH
Q 035828 612 --DMYSNC------KSNA-AWSSMISAYGY---HGKGWEAIELFHEMCNSGIRPTKSSVISLLSA--CSHSGLVDEGLQY 677 (781)
Q Consensus 612 --~~~~~~------~~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~ 677 (781)
.+|-+. |++. .|+..+.-+.+ ..+.+.|..+|++..+ |++|...-+-.|+.+ -.+.|-...|+.+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222222 2222 34444443332 2345666667766666 555544322222222 1234566666666
Q ss_pred HHHhHHHcCCCCC--cchHHHHHHHhhh-------cCChHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCCcHHHHHH
Q 035828 678 YNNMLEEYDVRPE--TEHHVCIVDMLGR-------SGKLQEAYEFIKNLPIQPKPG---VWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 678 ~~~~~~~~~~~p~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 745 (781)
+++... ++++. ...|+..|.--.. .+=+++|++.+ |+.. ..-.+...-.+.|..+.|..+
T Consensus 609 yerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 609 YERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 666532 34443 2444444432111 11233333332 3322 233334444567778888888
Q ss_pred HHHHhccCCC--CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 746 AELLFKLEPE--NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 746 ~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|.-..+..|+ ++..|...-.--.+.||-+.-.+++
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7777777643 4555666666677777765555544
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.1e-08 Score=95.18 Aligned_cols=342 Identities=13% Similarity=0.134 Sum_probs=194.3
Q ss_pred HhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 414 INCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
.+.+..|+|...++.. .+-+..+...-.+.+.+.|++++|+.+|+.+.+.+--.-+...-..++.+-.. ...
T Consensus 90 Yrlnk~Dealk~~~~~-~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGL-DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV 161 (652)
T ss_pred HHcccHHHHHHHHhcc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH
Confidence 3678888888888844 33344455556677788889999999999887764111111112222221100 001
Q ss_pred HHHHHHhcCCCChHHHHHHH---HHHHhcCChHHHHHHhhhc--------CCCC-----h-----hhHHHHHHHHHhCCC
Q 035828 494 HGLALKSLMGLDTRVQNALI---TMYGRCRDIKSASTVFESC--------YNCN-----L-----CTWNCMISAFSQNKA 552 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~l~~~~~~~~~ 552 (781)
..+......| ..+|..+. -.+...|++.+|+++++.. ...| + ..--.+.-.+...|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222222 22343333 3455678899998888765 2111 1 122344556778899
Q ss_pred hhHHHHHHhhc-C-CCCCHhHHHHHHH---HhcccCchHH--HHHH-----------HHHHHHhCCCCCchHHHHHHHhh
Q 035828 553 EVRALELFRHL-E-FEPNEISIVSILS---ACTQLGVLRH--GKQI-----------HGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 553 ~~~A~~~~~~~-~-~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
.++|.++|... . ..+|......... +...-.++-. +... +..+..........--+.++.+|
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 3 4455433222222 1211111111 1111 11111111111222223445554
Q ss_pred hcC--------------CChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCcHHHHHH
Q 035828 615 SNC--------------KSNAAWSSMISAY--GYHGKGWEAIELFHEMCNSGIRPT--KSSVISLLSACSHSGLVDEGLQ 676 (781)
Q Consensus 615 ~~~--------------~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~ 676 (781)
.+- -....+.+++... ++...+.+|.+++...-+. .|. .......+......|+++.|.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 443 1122333333332 2233577788888877664 343 3455555666778999999999
Q ss_pred HHH--------HhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-----CCCCCcc----hHHHHHHHHHhcCCc
Q 035828 677 YYN--------NMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-----PIQPKPG----VWGAMLSACSHHGDT 739 (781)
Q Consensus 677 ~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~ 739 (781)
++. .+.+. .-.+.+...+...+.+.++-+-|..++.++ ...+... .+...+..-.+.|+-
T Consensus 398 il~~~~~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999 44322 223456677888888888888888777665 1233323 334444444568999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++|...++++++.+|++......+..+|..-
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998765
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.6e-08 Score=92.38 Aligned_cols=261 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHhhcCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh--hHHHHHHHhcCccchHHHH
Q 035828 417 GDLVAAFSLLQRISHNSDTSC---WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV--TLVNVISACGNLELAFEGK 491 (781)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~ 491 (781)
++.++|.++|-+| .+.|+.+ --+|-+.|.+.|..+.|+++-+.+.++....-+.. ..-.|-.-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~-l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEM-LQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHH-HhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455555555555 2222222 23344555555666666666555554320100000 1111222244455555555
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh--------hhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL--------CTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.+|..+.+.+. .-......|+..|-...+|++|+++-+++..-+. ..|..+...+....+.+.|.+++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55555554331 1233445566677777777777766665442222 23444555555566667777777666
Q ss_pred -CCCCCHhHHHHHH-HHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 564 -EFEPNEISIVSIL-SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 564 -~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
...|+.+--+.++ ......|+++.|.+.++.+.+.+..--.. +...|..+|...|+.++.+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e----------------vl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE----------------VLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH----------------HHHHHHHHHHHhCCHHHHHH
Confidence 5555444333332 23344555555555555555544332222 23334444555566666555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 642 LFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 642 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
++.++.+.. +....-..+..--....-.+.|..++.+-+++ +|+...+..|++.
T Consensus 271 fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHh
Confidence 555555532 22222222222222222234444444443333 5555555555544
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=3.1e-07 Score=92.18 Aligned_cols=443 Identities=13% Similarity=0.085 Sum_probs=263.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 035828 254 LNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAE 333 (781)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 333 (781)
..+++...++..+.+.+.. .--..|....--.+...|+.++|....+.-.+..+. +.+.|..+--.+....++++|.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 5667777777777777632 222234433333456678888888877776665443 4566666666666778888888
Q ss_pred HHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 334 LLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
+.|..... +. +-|...+..+--.-
T Consensus 96 Kcy~nAl~----------------------~~----------------------------------~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 96 KCYRNALK----------------------IE----------------------------------KDNLQILRDLSLLQ 119 (700)
T ss_pred HHHHHHHh----------------------cC----------------------------------CCcHHHHHHHHHHH
Confidence 88887654 11 11223333333333
Q ss_pred HhcCCHHHHHHHHHhh-cCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH------HhcCcc
Q 035828 414 INCGDLVAAFSLLQRI-SHNS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS------ACGNLE 485 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~ 485 (781)
++.++++........+ +..| ....|..+..++.-.|+...|..++++..+..+..|+...|.-... .....|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4444444444333332 2234 3456888888888899999999999998877534566665543322 234566
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCC--ChhhHH-HHHHHHHhCCChhHHH-HHHh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNC--NLCTWN-CMISAFSQNKAEVRAL-ELFR 561 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~l~~~~~~~~~~~~A~-~~~~ 561 (781)
..+.|.+.+......-+ -....-..-...+.+.+++++|..++..+..+ |-..|. .+..++.+-.+..+++ .+|.
T Consensus 200 ~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred cHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666666554433211 11122233455677889999999999888744 334444 3444444444444555 6676
Q ss_pred hc-CCCCCHhHHHHH-HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHH
Q 035828 562 HL-EFEPNEISIVSI-LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEA 639 (781)
Q Consensus 562 ~~-~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A 639 (781)
.. +..|.......+ ++......-.+....++..+.+.|+++-.. .+...|-.-.+.+-.
T Consensus 279 ~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~-------------------dl~SLyk~p~k~~~l 339 (700)
T KOG1156|consen 279 ILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK-------------------DLRSLYKDPEKVAFL 339 (700)
T ss_pred HHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh-------------------hhHHHHhchhHhHHH
Confidence 66 233322111111 111222223344556667777777765332 233333221111111
Q ss_pred HHHHHHH----HhCC----------CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 640 IELFHEM----CNSG----------IRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 640 ~~~~~~m----~~~g----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
.++.-.+ ...| -+|... ++..++..+-+.|+++.|..+++..+ +-.|+ +..|..-.+.+.
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHH
Confidence 1111111 1111 134443 56667788889999999999999987 45888 578888899999
Q ss_pred hcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC-------chHHHH--HHHHHhcC
Q 035828 703 RSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV-------GYYISL--SNMYVALG 771 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l--~~~~~~~g 771 (781)
..|++++|..++++.. -.||...-...+.-..++.+.++|..++.+..+.+.+-. -.|+.+ |.+|.++|
T Consensus 417 H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 9999999999999883 345544444666667789999999999988776654211 123332 45788999
Q ss_pred ChhhHHh
Q 035828 772 RWKDAVE 778 (781)
Q Consensus 772 ~~~~A~~ 778 (781)
++-+|++
T Consensus 497 k~g~ALK 503 (700)
T KOG1156|consen 497 KLGLALK 503 (700)
T ss_pred HHHHHHH
Confidence 9987764
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.1e-08 Score=91.56 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=174.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChHH
Q 035828 448 NGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLD---TRVQNALITMYGRCRDIKS 524 (781)
Q Consensus 448 ~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 524 (781)
+++.++|..+|-+|.+.. +-+..+-.+|-+.+.+.|.+|.|..++..+.++.--+. ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 678999999999998842 22233444556667888999999999988876532221 2233455666778888888
Q ss_pred HHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHh------HHHHHHHHhcccCchHHHHHHHHH
Q 035828 525 ASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-EFEPNEI------SIVSILSACTQLGVLRHGKQIHGH 594 (781)
Q Consensus 525 A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~ 594 (781)
|..+|..+.+.+. .....|+..|-...++++|++.-+++ ...|... -|.-|........+++.|...+++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887775433 46677788888888888888887776 3333222 233344444455667777777766
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEG 674 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 674 (781)
..+.+.+- +.+=-.+.+.....|+++.|.+.|+...+.+..--+.+...|..+|...|+.+++
T Consensus 206 Alqa~~~c-----------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 206 ALQADKKC-----------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhCccc-----------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66554432 1223344455667777777777777777754333344667777777777777777
Q ss_pred HHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH-HhCCCCCCcchHHHHHHHHHh---cCCcHHHHHHHHHHh
Q 035828 675 LQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI-KNLPIQPKPGVWGAMLSACSH---HGDTKMGKQVAELLF 750 (781)
Q Consensus 675 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 750 (781)
...+..+.+. .+....-..+.+......=.+.|...+ +.+.-+|+...+..+++.... .|........+..+.
T Consensus 269 ~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 7777776543 455554555555444444445555544 344667777777777665433 223344444444444
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=2e-09 Score=93.58 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=136.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+...+.-+|...|+...|..-+++.++ ..|+. .+|..+...|.+.|+.+.|.+.|++.+ .+.|+ ..+.++...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345566789999999999999999998 56754 589999999999999999999999987 45887 589999999
Q ss_pred HhhhcCChHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+|..|++++|...|+++-..|. ..+|..++....+.|+.+.|...+++.++++|+.+.....++......|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998854553 45788888888899999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 192 Ar~~~ 196 (250)
T COG3063 192 ARLYL 196 (250)
T ss_pred HHHHH
Confidence 87643
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=3.5e-06 Score=86.86 Aligned_cols=270 Identities=9% Similarity=-0.045 Sum_probs=158.0
Q ss_pred HHhhhhcCCCcchhhHHHH--HHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhc--
Q 035828 28 ALFYETCNKDVVTWNAMIT--ACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAG-- 103 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 103 (781)
+-|-....=|..|-.+|++ -|...|+.+.|.+-.+..+ +...|..+.+-|.+.++++-|.-.+-.|....
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3333334446667777775 4667888888877766543 45678888888888888888887777775321
Q ss_pred ------CCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 104 ------MIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 104 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.+.+...-....-.-...|.+++|+.++..-++ |..|=..|-..|.+++|+++-+.--+- .-..||
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Ty 861 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTY 861 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhH
Confidence 111112212222223356777777777765543 344445556677777777776543221 123455
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 035828 178 SSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 257 (781)
..-..-+...+|++.|...++..-... ..++..|. .++.......+.+.. ...|.--...+-..|+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~ha------fev~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHA------FEVFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChH------HHHHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccc
Confidence 555555555666666666555321111 11111111 122222333333332 2334334444456788
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFN 337 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 337 (781)
.+.|+.+|...+. |-.+++..|-.|..++|.++-++- -|....-.|.+.|-..|++.+|..+|-
T Consensus 928 mdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888888877655 345666677788888888776552 255566678888888899999988887
Q ss_pred hhCC
Q 035828 338 AIAP 341 (781)
Q Consensus 338 ~~~~ 341 (781)
+...
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 6644
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=7.7e-06 Score=76.05 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCChhh-HHHHHH
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGH-------FQEAIKTFKSMTQQQNASPDSVT-LVNVIS 479 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~ 479 (781)
|+-.|.+.+++++|..+.+++.+. |-......++ ++..|+ ..-|...|+-.-+++ ..-|... -.++..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa-~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESA-LECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccc-cccccccchHHHHH
Confidence 444577888888888888877332 2222222222 222222 334444444443333 3222211 112222
Q ss_pred HhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHH-HHHHHHHhCCChhH
Q 035828 480 ACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN---LCTWN-CMISAFSQNKAEVR 555 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~~~~~~ 555 (781)
.+--..+++++...++.+...-..-|...+| +..+++..|...+|.++|-.+..++ -.+|. .+.++|.+.+.++.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 3333345566666666555554444444443 5666677777777777776665443 23443 34456667777777
Q ss_pred HHHHHhhcCCCCCHhHHHHH-HHHhcccCchHHHHHHHHHHHHhCCCC
Q 035828 556 ALELFRHLEFEPNEISIVSI-LSACTQLGVLRHGKQIHGHVFHLGFQE 602 (781)
Q Consensus 556 A~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~ 602 (781)
|-+++-+++-..+..++.-+ ..-|.+++.+--|.+.|+++...+..|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 76666555333333333333 234556666555555565555544433
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=1.6e-08 Score=96.86 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|+++.|...++...+.....
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------- 98 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------------- 98 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------------
Confidence 3444445555555555555555555 33343 3444455555666666666666666665543221
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
...+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 99 ---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 172 (234)
T TIGR02521 99 ---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESL 172 (234)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHH
Confidence 1145556667778888888888888887643222 3346666777788888999999999888754 454 4677
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
..+...+...|++++|.+.+++. ...| +...+...+..+...|+.+.|..+.+.+.+..|
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 78888888899999998888876 2223 444556666777788899999888888766544
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.1e-09 Score=96.81 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHH-HHHHhc
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVS-ILSACT 580 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~ 580 (781)
|..--+.+.++|.+.|.+.+|.+.|+... .+.+.+|-.+-+.|.+-++++.|+.++.+- +..|-.+||.. ..+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33444678889999999999999888665 456678888899999999999999999888 77887777654 344556
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVIS 660 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 660 (781)
..++.++|.++++...+.... ++.+...+..+|--.++.+-|+..|.++.+.|+. +...|+.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-----------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N 363 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-----------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN 363 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-----------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence 667777788887777664321 1223333445556667788888888888877754 4456777
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH 736 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 736 (781)
+.-+|.-.+++|-++..|++.+.. --.|+ ..+|.++.......|++.-|.+-|+-+ ...| ....++.+.-...+.
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 776777777888888888777654 33454 366777777777777777777777654 2233 345667666666677
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
|+.++|..++..+....|+..+..++++.
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeE
Confidence 78888888887777777776665555443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4.3e-09 Score=95.91 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=182.0
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCC
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 619 (781)
+.+.++|.+.|.+.+|...|+.. ...|-..||..|-.+|.+..+.+.|..++.+-.+. .|..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT------------- 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVT------------- 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhh-------------
Confidence 56889999999999999999988 78888899999999999999999999998876552 232222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
...-+.+.+...++.++|.++|+...+. ...+......+...|.-.++++-|+.++.++++- |+ -++..|.++.-
T Consensus 292 --~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigL 366 (478)
T KOG1129|consen 292 --YLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGL 366 (478)
T ss_pred --hhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHH
Confidence 3444667778889999999999999874 1234445555556677788999999999999876 43 35678999999
Q ss_pred HhhhcCChHHHHHHHHhCC---CCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 700 MLGRSGKLQEAYEFIKNLP---IQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+|.-.+++|-++.-|+++. -.| ...+|-.+.......||+..|.+-++-++..+|++..++++|+-+-.+.|+.+
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 9999999999988877661 223 34579899888899999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|+.++
T Consensus 447 ~Arsll 452 (478)
T KOG1129|consen 447 GARSLL 452 (478)
T ss_pred HHHHHH
Confidence 999876
No 77
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2e-05 Score=81.52 Aligned_cols=229 Identities=12% Similarity=0.128 Sum_probs=140.6
Q ss_pred HHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhc-CC--------CCChhhHHHHHHHHhcc
Q 035828 16 AYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEE-GI--------RFDSTTLLIIVSALTQM 86 (781)
Q Consensus 16 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~~~~~~~~~ll~~~~~~ 86 (781)
.|.--|+.+.|.+-.+-+. +-..|..|.+.|.+.++.+-|.-.+..|... |. .|+ .+=..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3556678888777655443 3457999999999999999998888887642 11 122 2222222233467
Q ss_pred CcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCC-eeehHHHHHHHhhCCChhhHHHHHHHH
Q 035828 87 NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCAD-TVSWNTIMSGCLHNNYPEKCLLYFREM 165 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 165 (781)
|.+++|..++.+-++. ..|=..|...|.+++|.++-+.-.+-. ..||..-..-+-..++++.|++.|++-
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8888898888887764 345566778899999999876543322 235666666666778888888888754
Q ss_pred hhcC-------------------CCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 166 GWSG-------------------EQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 166 ~~~g-------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
.... -.-|...|...-+-+...|+.+.|..++.. ..-|-+++...|-.|+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-----------A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-----------AKDYFSMVRIKCIQGK 953 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-----------hhhhhhheeeEeeccC
Confidence 2211 011223333344444455555555555543 2234445555555666
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 035828 227 IEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQ 269 (781)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (781)
.++|-++-++- .|..+.-.+.+.|-..|++.+|...|.+.+
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666655443 244555566677777777777777776654
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=1.5e-08 Score=108.79 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=148.0
Q ss_pred hhHHHHHHhhc-CCCCCHh-HHHHHHHHhc---------ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh
Q 035828 553 EVRALELFRHL-EFEPNEI-SIVSILSACT---------QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA 621 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 621 (781)
.++|+.+|++. ...|+.. .+..+..++. ..+++++|...+++..+.+.. +..
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-----------------~~~ 339 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-----------------NPQ 339 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------------CHH
Confidence 45677777777 6666543 2322222221 334578888888887765432 333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 699 (781)
+|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++.++ ..|+. ..+..++.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~ 414 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHH
Confidence 677777788889999999999999988 4565 45778888889999999999999999874 46763 33444555
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 700 MLGRSGKLQEAYEFIKNLP--IQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
.+...|++++|++.++++. .+|+.. .+..+...+...|+.++|...++++....|++......++..|...|+ +|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HH
Confidence 6777899999999988762 245444 456677777789999999999999988889888888899999888884 55
Q ss_pred Hh
Q 035828 777 VE 778 (781)
Q Consensus 777 ~~ 778 (781)
..
T Consensus 493 ~~ 494 (553)
T PRK12370 493 LP 494 (553)
T ss_pred HH
Confidence 54
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=3.4e-06 Score=87.40 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMY 516 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 516 (781)
+.-+...|-..|++++|++..++.++. .|+ ...|..-.+.+-+.|++.+|...++........ |..+-+-.+..+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 344566777888888888888888774 355 344555566677788888888887777765543 666666677777
Q ss_pred HhcCChHHHHHHhhhcCCCCh----------hhHH--HHHHHHHhCCChhHHHHHHhhc
Q 035828 517 GRCRDIKSASTVFESCYNCNL----------CTWN--CMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~----------~~~~--~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.++|++++|.+++......+. ..|- ....+|.+.|++..|+..|..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788888888887776654431 1332 2345677777777777666554
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=6.8e-06 Score=84.70 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|......+.+.++.++|...+.+... +.| ....|......+...|++++|.+.|...+ -+.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 477777888899999999988888876 444 45567777777888999999999999886 56888 689999999
Q ss_pred HhhhcCChHHHHH--HHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 700 MLGRSGKLQEAYE--FIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 700 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
++.+.|+..-|.+ ++.++ +..| +...|..+...+.+.||.+.|..-|..+.++.+.+|-
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 77776 6666 5668999999999999999999999999999877664
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=6.6e-05 Score=79.66 Aligned_cols=681 Identities=12% Similarity=0.101 Sum_probs=337.3
Q ss_pred CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHH-----HHHhc--CCCCc-
Q 035828 37 DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCL-----SIKAG--MIADS- 108 (781)
Q Consensus 37 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~--~~~~~- 108 (781)
+..|-+.+=..=...|.+.--+.+|..+...| +.|..-=.-+.+.-..+|+.+-....+.+ -.+.| ++|..
T Consensus 393 t~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~ 471 (1666)
T KOG0985|consen 393 TPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDT 471 (1666)
T ss_pred CHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCc
Confidence 44455555555556677777778888887777 44443322334443444443333332221 11222 11211
Q ss_pred ----------chhhhHHHHhhccCChhhHHHHhccCC-CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 109 ----------SLCNVFVNMYAKCGDLNSSECTFSGMH-CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 109 ----------~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.+-+..+.+|+..|+++++.-...+.. .|| |-.+++...+ -+++.+.++...|.+..- ....+
T Consensus 472 ~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~di 545 (1666)
T KOG0985|consen 472 TLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADI 545 (1666)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccH
Confidence 122334555555555555554444332 233 5556666655 567888888777766432 12222
Q ss_pred HHHHHHhhccCChhHHHHHHHHH---------------HHhcCCCCCc------------hhHHHHHHHHHHhcCChhHH
Q 035828 178 SSAVAASACLGELSYGKVIHALG---------------IKLGYEDSPY------------VSVTNSLISMYSQCGDIEAA 230 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~---------------~~~~~~~~p~------------~~~~~~ll~~~~~~g~~~~a 230 (781)
..+...+...+....+..++-.. .+......|+ ..-+..+...|.+.|-...|
T Consensus 546 e~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qra 625 (1666)
T KOG0985|consen 546 EQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRA 625 (1666)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHH
Confidence 33333222222222222111111 1111111110 22234455666677777777
Q ss_pred HHHhccCC--CCCcccHH----HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHH
Q 035828 231 ERAFWGMT--CKDVVSWN----AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYA 304 (781)
Q Consensus 231 ~~~~~~~~--~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (781)
++.+..+. .+.+..-+ --+..|...-.++.+++.++.|.... ++-+..+...+..-|+..--.+...++|+..
T Consensus 626 LehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N-irqNlQi~VQvatky~eqlg~~~li~lFE~f 704 (1666)
T KOG0985|consen 626 LEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN-IRQNLQIVVQVATKYHEQLGAQALIELFESF 704 (1666)
T ss_pred HHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhh
Confidence 77776664 11111111 11233444556778888888887766 7777666555555554443344444444444
Q ss_pred HHh-----------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHH-HHHHHHHHHHHHhcccCCchhhh
Q 035828 305 IRR-----------LLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWN-SMISGLFKEMLYLCSQFSFSTLL 372 (781)
Q Consensus 305 ~~~-----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~~~~ 372 (781)
+.. ++.-|+.+.-..|.+-++.|++.+++++.++-.- |+ .-.+.++++-.. +| -.
T Consensus 705 ks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~------YdpErvKNfLkeAkL----~D---ql 771 (1666)
T KOG0985|consen 705 KSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC------YDPERVKNFLKEAKL----TD---QL 771 (1666)
T ss_pred ccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc------CCHHHHHHHHHhccc----cc---cC
Confidence 321 2344555556677888888888888777643211 11 001111111100 00 11
Q ss_pred hhhcccCCCcchhhh-HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH-------------HHHHhhcC-CCCccc
Q 035828 373 AILPSCNSPESLEFG-KSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAF-------------SLLQRISH-NSDTSC 437 (781)
Q Consensus 373 ~ll~~~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~-------------~~~~~~~~-~~~~~~ 437 (781)
.++..|.+-+-+... .-++. .+ .-..|..|.+.-++...- ++.+.+.. -.....
T Consensus 772 PLiiVCDRf~fVhdlvlYLyr----nn-------~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 772 PLIIVCDRFDFVHDLVLYLYR----NN-------LQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred ceEEEecccccHHHHHHHHHH----hh-------HHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC
Confidence 223333322211110 00000 00 001112222111111110 11111000 012222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH-HHH---HHHH------HHHhcC-----
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE-GKS---LHGL------ALKSLM----- 502 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~---~~~~------~~~~~~----- 502 (781)
-+-|+.-.-+.++..--+.+++...+.| ..|..|++.+...|...++-.+ ..+ .++. ..++..
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3444555556667777777777777776 4677888888888766554322 211 1111 111110
Q ss_pred --------------CCChHHHHHHHHHHHhcCChHHHHHHhhh-----------c-----C-CCChhhHHHHHHHHHhCC
Q 035828 503 --------------GLDTRVQNALITMYGRCRDIKSASTVFES-----------C-----Y-NCNLCTWNCMISAFSQNK 551 (781)
Q Consensus 503 --------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~-----~-~~~~~~~~~l~~~~~~~~ 551 (781)
-.....|....+-+.+..+.+--.+++.+ . + ..|+..-+..++++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 00112222233333333443333333311 0 0 123345556677788888
Q ss_pred ChhHHHHHHhhcCCCCCHh-----HHHHHHHHhccc---------------------------CchHHHHHHHHHHHHhC
Q 035828 552 AEVRALELFRHLEFEPNEI-----SIVSILSACTQL---------------------------GVLRHGKQIHGHVFHLG 599 (781)
Q Consensus 552 ~~~~A~~~~~~~~~~p~~~-----~~~~ll~~~~~~---------------------------~~~~~a~~~~~~~~~~~ 599 (781)
-+.+-+++++++-+.|+.. --+.|+-...+. +-+++|..+|+..-
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~--- 1075 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD--- 1075 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc---
Confidence 8888888888882222221 222232222222 12333333333221
Q ss_pred CCCCchHHHHHHHhh----------hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 600 FQENSFISSALLDMY----------SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 600 ~~~~~~~~~~l~~~~----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
.+....+.|++-- .+|..+..|+.+..+-...|...+|++-|-+.- |+..|..++..+.+.|
T Consensus 1076 --~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1076 --MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTG 1147 (1666)
T ss_pred --ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcC
Confidence 1111112222211 223567789999999999999998887765432 5678999999999999
Q ss_pred cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHH
Q 035828 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELL 749 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (781)
.+++-..++....+. .-.|. +-+.|+-+|++.+++.+-.+++ .-|+..-...+.+-|...|.++.|+-+|...
T Consensus 1148 ~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred cHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999999877655 33444 4457889999999988877766 3477777778888888888888887777653
Q ss_pred hccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 750 FKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 750 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.-|..|+..+...|++..|.
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHH
Confidence 23444555555555554443
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=3e-08 Score=97.08 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=118.6
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.+-..+...|+.+.|...|+...+... + +..+|+.+...+...|++++|++.|++..+ +.|
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P--~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P 129 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRP--D---------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDP 129 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC--C---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 333344555556666555555554322 2 223678888888899999999999999887 566
Q ss_pred C-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHH
Q 035828 654 T-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAML 730 (781)
Q Consensus 654 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 730 (781)
+ ..++..+..++...|++++|.+.+++..+. .|+..............+++++|++.+.+. ..+|+...+ .
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~-- 203 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N-- 203 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--
Confidence 4 457777888888889999999999988754 665432222223345667899999888654 233333222 2
Q ss_pred HHHHhcCCcHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 731 SACSHHGDTKMGKQVAELLF-------KLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
......|+...+ +.++.+. ++.|+.+.+|+.||.+|.+.|++++|+..++
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223345655443 2333333 4456677889999999999999999988653
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.3e-06 Score=78.35 Aligned_cols=273 Identities=12% Similarity=0.005 Sum_probs=182.7
Q ss_pred cchHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHH---HHHHHHHhCCChhHHHHHH
Q 035828 485 ELAFEGKSLHGLAL-KSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWN---CMISAFSQNKAEVRALELF 560 (781)
Q Consensus 485 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~ 560 (781)
++...+...+-.+. ..-++-+......+.+++...|+.++|.-.|+.....|+.+.. ...-.+.+.|+.+....+.
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 33334444444443 3445667888888888999999999999999877644443222 2222345677777776666
Q ss_pred hhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHH
Q 035828 561 RHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWE 638 (781)
Q Consensus 561 ~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 638 (781)
..+ . .+-....|..-....-...+++.|..+-++.++.+... +..|-.-...+...++.++
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----------------~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----------------HEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----------------chHHHhccHHHHhccchHH
Confidence 665 2 21222222222223344567777777777666544321 1123333455678899999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHH-HHh-hhcCChHHHHHHHH
Q 035828 639 AIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIV-DML-GRSGKLQEAYEFIK 715 (781)
Q Consensus 639 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~ 715 (781)
|.=-|...+. +.| +-.+|..|+.+|...|++.+|.-.-....+. +.-+..++..+. ..+ ....--++|.++++
T Consensus 353 A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 353 AVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9988988876 565 5679999999999999999999888877654 233345555442 222 22334578999998
Q ss_pred hC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 716 NL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 716 ~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+. ++.|+-. ....+...|...|.++.++.++++.+...|+ ..-+..||+.+.+.+.+.+|.+-
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHH
Confidence 76 7788744 5566677788899999999999999988887 45788999999999999888764
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=9.9e-08 Score=83.27 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=142.7
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCCh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSN 620 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 620 (781)
+.-.|...|++..|..-+++. ...|+. .++..+...|.+.|..+.|.+-|+...+......
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------------- 103 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------------- 103 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------------
Confidence 344455555555555555555 444432 3444444455555555555555555554333222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
...|..--.+|..|++++|...|++....-.-|. ..+|..+.-+..+.|+.+.|.+.|++.++. .|+ +.....+.
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a 180 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELA 180 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHH
Confidence 2456666678999999999999999987543333 358988988888999999999999998754 777 57888999
Q ss_pred HHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 699 DMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+...+.|++-.|...++.. +..++..++.-.++.....||.+.+-++=..+.++.|.++..-
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999998877 3457777777777777889999999999999999999877543
No 85
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=3e-08 Score=106.63 Aligned_cols=201 Identities=14% Similarity=0.016 Sum_probs=94.6
Q ss_pred hhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHH
Q 035828 553 EVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAY 630 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 630 (781)
.++|...+++. ...|+ ...+..+-..+...|++++|...++...+.+.. +...|..+...+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----------------~~~a~~~lg~~l 382 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-----------------SADIKYYYGWNL 382 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHH
Confidence 44555555554 44442 233333333444555555555555555544321 111344455555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+..+|...|+++
T Consensus 383 ~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 383 FMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHH
Confidence 666666666666666665 344322 2222333344456666666666665433 1233 334555566666666666
Q ss_pred HHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 709 EAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 709 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
+|...+.++ ...|+.. ..+.+...+...| +.|...++++.+..-..+.....+..+|.-.|+-+.|
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 666666554 2333322 2333333334444 3555555555543322222222244444444444443
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=1.1e-07 Score=96.95 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNS---GIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE 690 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~ 690 (781)
++.++..+...+++++|..+++...+. -..++. .+++.|...+...|++++|.+++++++... +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 444555566677777777666655431 122222 478888888888888888888888876652 12333
Q ss_pred -cchHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 691 -TEHHVCIVDMLGRSGKLQEAYEFIKNL-------P-IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
...++.|...|.+.+++.+|.++|.+. + ..|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 357778888888888888888877665 1 2333 3468888888888999999998888877
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7e-06 Score=81.90 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=115.6
Q ss_pred CChHHHHHHhhhcCCCCh-hhHHHHHHHH--HhCCChhHHHHHHhhc-CCCCCH--hHHHHHHHHhcccCchHHHHHHHH
Q 035828 520 RDIKSASTVFESCYNCNL-CTWNCMISAF--SQNKAEVRALELFRHL-EFEPNE--ISIVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
+..+.+.++....+...+ ..+..++... ++...+.+|.+++... .-.|+. ......+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 556677777776664332 3444444432 2333577888888887 566655 344445556688999999999998
Q ss_pred --------HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHH----HHH
Q 035828 594 --------HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--GIRPTKS----SVI 659 (781)
Q Consensus 594 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~----~~~ 659 (781)
.+.+.+..|.. ...++..+.+.++.+.|..++.+...- .-.+... ++.
T Consensus 401 ~~~~~~~ss~~~~~~~P~~------------------V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGT------------------VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhhhhhhhhhhhccChhH------------------HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 55555555554 344555566677776677776665431 1112222 333
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
.+...-.+.|+-++|...++++.+- .+++......++.+|++. +.++|..+-+.+.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 3334445679999999999999864 355678899999999887 6888988877763
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2e-07 Score=91.35 Aligned_cols=207 Identities=14% Similarity=0.003 Sum_probs=116.9
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCCh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSN 620 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 620 (781)
+...+...|+.++|...|++. ...|+ ...|+.+-..+...|+++.|...++...+... + +.
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~---------------~~ 132 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--T---------------YN 132 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C---------------CH
Confidence 333344444444444444444 33332 33444444444555555555555555444322 1 11
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...+++.... ..|+...+ .+..
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~- 206 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVE- 206 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHH-
Confidence 2566677777888999999999998887 4565432222222334567899999999775432 23333222 2322
Q ss_pred hhhcCChHH--HHHHHHhC-CCC----C-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcC
Q 035828 701 LGRSGKLQE--AYEFIKNL-PIQ----P-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP-ENVGYYISLSNMYVALG 771 (781)
Q Consensus 701 ~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 771 (781)
...|++.+ +.+.+.+. ... | ....|..++..+.+.|++++|+..++++.+.+| +.+.....+..+....+
T Consensus 207 -~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 207 -FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred -HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 33454433 33333322 111 1 234688888889999999999999999999996 55555555666555544
Q ss_pred Ch
Q 035828 772 RW 773 (781)
Q Consensus 772 ~~ 773 (781)
+.
T Consensus 286 ~~ 287 (296)
T PRK11189 286 DQ 287 (296)
T ss_pred hh
Confidence 43
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=1.3e-05 Score=80.97 Aligned_cols=353 Identities=10% Similarity=-0.007 Sum_probs=231.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC-C-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISH-N-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
+.+.|..+--.+....++++|.+.|..... . .|...|.-+.-.-++.|+++..........+. .+.....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHH
Confidence 445566665666677889999999987532 2 46777877777777888999888888888774 2333456677777
Q ss_pred HhcCccchHHHHHHHHHHHHhc-CCCChHHHHHHH------HHHHhcCChHHHHHHhhhcCCC--Chh-hHHHHHHHHHh
Q 035828 480 ACGNLELAFEGKSLHGLALKSL-MGLDTRVQNALI------TMYGRCRDIKSASTVFESCYNC--NLC-TWNCMISAFSQ 549 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~ 549 (781)
+.--.|+...|..+.+...+.. -.|+...+.... ....+.|..++|.+-+..-... |-. .-..-...+.+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 7788899999999999988765 356666554433 2345678888888877665532 112 22344566889
Q ss_pred CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhc-c-cCchHHHHHHHHHHHHhC---CCCCchHHHHHHHhhhcCCChhhH
Q 035828 550 NKAEVRALELFRHL-EFEPNEISIVSILSACT-Q-LGVLRHGKQIHGHVFHLG---FQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 550 ~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
.+++++|..++..+ ...||..-|.-.+..+. + .+..+....+++...+.= ..|.... .
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----------------l 295 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----------------L 295 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----------------H
Confidence 99999999999999 78999888777666554 2 333333335555544421 1111110 0
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHH----HHHHHHHHhHHH---------cCCCC
Q 035828 624 SSMISAYGYHGKG-WEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVD----EGLQYYNNMLEE---------YDVRP 689 (781)
Q Consensus 624 ~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~---------~~~~p 689 (781)
+ ......+ +..-+++..+.+.|+++-...+.+|- -.....+ .+..+...+-.. ..-+|
T Consensus 296 s-----vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 296 S-----VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred H-----HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 0 1111222 33446677778888776444444332 2211111 111111111100 00144
Q ss_pred C--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 690 E--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 690 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
. ..++..++..+-+.|+++.|..+++.+ ...|+.+ .|-.-.+.+.+.|+.+.|..+++++.+++-.|..+...-+.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 4 256667888899999999999999987 6667644 44455677888999999999999999999888888778888
Q ss_pred HHHhcCChhhHHhhc
Q 035828 766 MYVALGRWKDAVEIG 780 (781)
Q Consensus 766 ~~~~~g~~~~A~~l~ 780 (781)
=..+.++.++|.++.
T Consensus 448 YmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHccccHHHHHHH
Confidence 888899999998764
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.1e-06 Score=90.88 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 035828 443 VACTQNGHFQEAIKTFKSMTQQQNASPDSVTL-VNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRD 521 (781)
Q Consensus 443 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 521 (781)
..+...|++++|++.+++-.. ..+|...+ ......+.+.|+.++|..++..+++.+.. +..-|..+..+.+-...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 445677888888888876544 33554433 33444456666666666666666665421 22233333333211110
Q ss_pred hHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCch-HHHHHHHHHHHHhC
Q 035828 522 IKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVL-RHGKQIHGHVFHLG 599 (781)
Q Consensus 522 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~ 599 (781)
......+...++|+++ ...|.......+.-.+.....+ ..+...+..+...|
T Consensus 88 --------------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 88 --------------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred --------------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0112344555666666 3445444333332222222222 34556667777778
Q ss_pred CCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHH
Q 035828 600 FQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----G----------IRPTK--SSVISLLS 663 (781)
Q Consensus 600 ~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g----------~~p~~--~~~~~l~~ 663 (781)
+++ +|+.+-..|....+..-..+++...... | -.|.. .++..+..
T Consensus 142 vPs-------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 142 VPS-------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred Cch-------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 754 3555555555555555555555554432 1 12333 35566778
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 740 (781)
.|...|++++|++++++.++. .|+ +..|..-++.|-+.|++.+|.+.++.+ ...+. -..-+-.+..+.++|+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 888999999999999999854 788 689999999999999999999999988 34554 444455566677899999
Q ss_pred HHHHHHHHHhccCCCCCc-------hH--HHHHHHHHhcCChhhHHhhc
Q 035828 741 MGKQVAELLFKLEPENVG-------YY--ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+.+....+.+-+... .| ..-|.+|.++|++..|++-+
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988776631111 22 34677899999999998743
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-06 Score=86.25 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
...++++...+...- +.|+.. -...-...+.+.|++..|+..|.+++++ .|+ ...|.+-.-+|.+.|.+.+|+
T Consensus 338 k~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 338 KEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHH
Confidence 444555554444433 333321 1222245666778888888888888765 565 578888888888888888887
Q ss_pred HHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 712 EFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 712 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+=.+.. ...|+ ...|..-..++....++++|.+.|.+.++++|++..+...+...+.++
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 665554 34443 335555566666778888888888888888888888888888777764
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=0.00023 Score=75.81 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=90.7
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCC---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcC-CCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHC---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSG-EQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~ 184 (781)
..|..|-..|+...|..+|.+.|+..-+ .+...+......|++..+++.|..+.-.--+.. ...-...|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4566777777776677777777775543 355566777777777777777777622221111 000001111111112
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc-cHHHHH--HHHHhCCChhH
Q 035828 185 ACLGELSYGKVIHALGIKLGYEDSP-YVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVV-SWNAII--DGFALNGKFEE 260 (781)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li--~~~~~~~~~~~ 260 (781)
...++...+..-++...+. +| +...|..+..+|..+|+...|.++|.+...-++. .|...- ...+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 2334444444434333332 33 3678888888999999999999998776533222 233222 23466788888
Q ss_pred HHHHHHHHHH
Q 035828 261 AFDLLHEMQL 270 (781)
Q Consensus 261 a~~~~~~m~~ 270 (781)
+++.+.....
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=4.5e-09 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.2
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhc
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETC 34 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 34 (781)
||+.||..+||+||.+|.+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 7999999999999999999999999999998874
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3e-07 Score=88.48 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=146.4
Q ss_pred HHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc--C-CCCCHhHHH-HHHHHhcccCchH
Q 035828 511 ALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL--E-FEPNEISIV-SILSACTQLGVLR 586 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~-~~p~~~~~~-~ll~~~~~~~~~~ 586 (781)
-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++. + ..++..++. .....+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 34566666777766665555544555555554444444434556666666554 2 222233332 2223456778888
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACS 666 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 666 (781)
.|.+++..- . +.......+..|.+.++.+.|.+.++.|++ +..| .+...+..++.
T Consensus 120 ~AL~~l~~~------~----------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv 174 (290)
T PF04733_consen 120 EALKLLHKG------G----------------SLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWV 174 (290)
T ss_dssp HHHCCCTTT------T----------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHH
T ss_pred HHHHHHHcc------C----------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHH
Confidence 888776532 1 222455567888999999999999999987 4444 44555655554
Q ss_pred c--c--CcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCc-
Q 035828 667 H--S--GLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDT- 739 (781)
Q Consensus 667 ~--~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~- 739 (781)
. . +.+.+|..+|+++.+. ..+++.+++.++.+....|++++|.+++.+. ...| ++.++..++-.....|+.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 3 2 3689999999998654 4567788888999999999999999998875 4444 455666666666777876
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
+.+.++..++....|++| .+...-.+...++++
T Consensus 253 ~~~~~~l~qL~~~~p~h~----~~~~~~~~~~~FD~~ 285 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNHP----LVKDLAEKEAEFDRA 285 (290)
T ss_dssp HHHHHHHHHCHHHTTTSH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHH
Confidence 778889999888889877 333333444444443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.7e-07 Score=92.98 Aligned_cols=209 Identities=15% Similarity=0.271 Sum_probs=152.7
Q ss_pred HHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
+.+.|++.+|.-.|+.....| ...|.-|......+++-..|+..+++. ++.|+.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle-------------------- 354 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE-------------------- 354 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH--------------------
Confidence 456778888888887666443 357888887888888888888877777 77775432
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH---------
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL--------- 662 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~--------- 662 (781)
+.-.|...|...|.-.+|+..++...... |.. ..+.
T Consensus 355 ------------------------------aLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y---~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 355 ------------------------------ALMALAVSYTNEGLQNQALKMLDKWIRNK--PKY---VHLVSAGENEDFE 399 (579)
T ss_pred ------------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccc---hhccccCcccccc
Confidence 23334445566666667777777665421 110 0000
Q ss_pred --HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCC
Q 035828 663 --SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGD 738 (781)
Q Consensus 663 --~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 738 (781)
..+.....+....++|-++....+..+|+.++..|.-.|.-.|++++|++-|+.+ ..+|+ ...|+.|...+....+
T Consensus 400 ~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 400 NTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR 479 (579)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc
Confidence 1222223344555666666555465677888999999999999999999999977 66774 5589999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.++|+..|.+++++.|.-..+.++||-.|...|-++||.+.
T Consensus 480 s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 480 SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999864
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=2.9e-07 Score=87.68 Aligned_cols=158 Identities=16% Similarity=0.057 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHV 695 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 695 (781)
..+..+...+...|++++|...|++... ..|+. .++..+..++...|++++|...++++++...-.|.. ..+.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3566677788899999999999999987 34542 366778889999999999999999998763222221 2466
Q ss_pred HHHHHhhhc--------CChHHHHHHHHhC-CCCCCcc-hH-----------------HHHHHHHHhcCCcHHHHHHHHH
Q 035828 696 CIVDMLGRS--------GKLQEAYEFIKNL-PIQPKPG-VW-----------------GAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 696 ~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+..++... |++++|.+.++++ ...|+.. .+ ..+...+.+.|++++|...+++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 666666654 7899999999887 4455432 22 1344556788999999999999
Q ss_pred HhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 749 LFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 749 ~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+..|+++ ..+..++.+|.+.|++++|.+.+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987654 68999999999999999999864
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=5.9e-05 Score=80.12 Aligned_cols=578 Identities=11% Similarity=-0.012 Sum_probs=296.0
Q ss_pred ehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 035828 141 SWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISM 220 (781)
Q Consensus 141 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~ 220 (781)
.|..|-..|....+...|...|+...+-+ ..+......+...+++..+++.|..+.-..-+...... -..-|..+--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~-~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA-CKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH-HHhhhhhcccc
Confidence 46677777777777788888888876533 22344577788889999999998887433322221100 01122223345
Q ss_pred HHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-Hhcccchhh
Q 035828 221 YSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISL-CADSLLLRE 296 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~-~~~~~~~~~ 296 (781)
|.+.++...|..-|+... +.|...|..+..+|.+.|++..|+++|.+... +.|+...-...... .+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhHHHHHHHHHHHHHhhhHHH
Confidence 666788888888887664 34778899999999999999999999998877 77776432222222 457788888
Q ss_pred hhhHHHHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHH-HHHHHHHHHHHhcccCCch
Q 035828 297 GRSVHGYAIRRLL------GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNS-MISGLFKEMLYLCSQFSFS 369 (781)
Q Consensus 297 a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~~~~~ 369 (781)
+...+..+...-- .--..++-.+...+.-.|-..++.+.++.-.+ .+.. +++.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie-----~f~~~l~h~~-------------- 709 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE-----SFIVSLIHSL-------------- 709 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-----HHHHHHHHhh--------------
Confidence 8888877764311 11112222222222223333344444433222 0000 00000
Q ss_pred hhhhhhcccCCCcchh---hhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH---H---HHHHHHHh-hcCCCCcccHH
Q 035828 370 TLLAILPSCNSPESLE---FGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL---V---AAFSLLQR-ISHNSDTSCWN 439 (781)
Q Consensus 370 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~---~a~~~~~~-~~~~~~~~~~~ 439 (781)
+...-.+. .+-.+|.+.. .. .|+.....++..-.-+.+.. + -+.+.+-. +..-.+..+|.
T Consensus 710 --------~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 710 --------QSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred --------hhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 00000000 1111111111 00 12222222222211111111 1 00111100 00002344554
Q ss_pred HHHHHHHh----C----CChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHH
Q 035828 440 IVIVACTQ----N----GHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNA 511 (781)
Q Consensus 440 ~li~~~~~----~----~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (781)
.+...|.+ . .+...|+..++...+. ..+...+-..+......|++.-+...|-.-+... +....+|..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~N 855 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLN 855 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheec
Confidence 44443333 1 2234677777777663 3444445555555566666666655554333222 224455666
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-------CCCCCHhHHHHHHHHhcc
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-------EFEPNEISIVSILSACTQ 581 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~ 581 (781)
+--.+.+..+++.|...|.... +.|.+.|--........|+.-+++.+|..- |-.|+..-+.....-...
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 6666778889999998888776 334566766555566778888888888763 233443332222223334
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh-cC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS-NC-KSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSV 658 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~ 658 (781)
.|+.+.-..-.+.+.... ..+.-|. +. .+.++|.+.....-+.+.+..|.++..+...- ..+-|...|
T Consensus 936 Ng~~e~~I~t~~ki~sAs---------~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSAS---------LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred ccchHHHHHHhhhhhhhH---------HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444333222222221111 0111111 11 23446777777777777777777776665321 023344455
Q ss_pred HHHH----HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC-cchHHHH
Q 035828 659 ISLL----SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK-PGVWGAM 729 (781)
Q Consensus 659 ~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-~~~~~~l 729 (781)
+.+. +-++..|.++.|...+...-. ..+..+...-+. ..-.|+++++.+.|+++ . ...+ +.....+
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 5432 223334455544433322110 001111111111 12356788888888776 2 1222 2344555
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+......+..+.|...+-+...+.|.+......|+-++.-.
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHh
Confidence 55556778888888888888888887777777776665543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=2.3e-05 Score=80.29 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH----
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGI-RPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH---- 694 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---- 694 (781)
.+..+...+...|++++|+.++++.....- .|+. ..|..+...+...|++++|..++++.... .|.....
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~---~~~~~~~~~~~ 226 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP---SAESDPALDLL 226 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---ccCCChHHHHh
Confidence 344555556666777777777766665321 1222 23445566666677777777777766422 2211111
Q ss_pred H--HHHHHhhhcCChHHHHHH--H-HhC-CCCC-CcchH--HHHHHHHHhcCCcHHHHHHHHHHhccC---------CCC
Q 035828 695 V--CIVDMLGRSGKLQEAYEF--I-KNL-PIQP-KPGVW--GAMLSACSHHGDTKMGKQVAELLFKLE---------PEN 756 (781)
Q Consensus 695 ~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~~ 756 (781)
+ .++..+...|..+.+.++ + ... ...| ....+ .+.+.++...|+.+.|...++.+.... +..
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 222333334432222222 1 111 1001 11112 244555667788888888888776533 123
Q ss_pred CchHHHHHHHHHhcCChhhHHhhc
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.......+.++.++|++++|++++
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHH
Confidence 555677888899999999998865
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=3.6e-06 Score=81.09 Aligned_cols=253 Identities=12% Similarity=0.071 Sum_probs=137.3
Q ss_pred HHhcCCHHHHHHHHHhhcCCC--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHH
Q 035828 413 YINCGDLVAAFSLLQRISHNS--DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 490 (781)
+.-.|++..+..-.+.-...+ +......+.+++...|+++.++. ++... -.|.......+...+...++.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~--~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS--SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT--SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC--CChhHHHHHHHHHHHhCccchHHH
Confidence 344566666664444111111 22334455677777777665432 33222 345555554444444443333444
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC
Q 035828 491 KSLHGLALKSLMG-LDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN 568 (781)
Q Consensus 491 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 568 (781)
..-+......... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.| ....|
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3333333222222 12222222234455667777777776654 33344445556666666666666666666 34444
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
..... ...+.+......+++.+|..+|+++.+
T Consensus 164 ~~l~q------------------------------------------------La~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 164 SILTQ------------------------------------------------LAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp HHHHH------------------------------------------------HHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred HHHHH------------------------------------------------HHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 32211 122333334344678889999999766
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCCh-HHHHHHHHhCC-CCCCcc
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKL-QEAYEFIKNLP-IQPKPG 724 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~p~~~ 724 (781)
. ..++..+.+.+..++...|++++|.+++++.+ ...|. +.+..+++-+....|+. +.+.+.+.+++ ..|+..
T Consensus 196 ~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 196 K-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp C-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred c-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4 56778888888888888999999999888875 34565 56777788887788877 55667887773 455544
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=3.6e-07 Score=78.27 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 640 IELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 640 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
..++++..+ +.|+. +..+..++...|++++|...|+..+. ..|+ ...|..+..++.+.|++++|+..++++
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666665 55664 55567788889999999999999874 4675 688999999999999999999999987
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
...| +...+..+..++...|++++|+..+++++++.|+++.++..++.+....
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4455 6678888999999999999999999999999999999999988876543
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=9.5e-07 Score=80.16 Aligned_cols=139 Identities=12% Similarity=0.193 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++. .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4556777887776544432221 11 0122355667777777776644 554 577888888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CcchHHHHHHHH-HhcCC--cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 706 KLQEAYEFIKNL-PIQP-KPGVWGAMLSAC-SHHGD--TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++++|...++++ ...| +...+..+..++ ...|+ .++|.++++++.+.+|+++.++.+|+..+.+.|++++|++.|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888776 4455 444566666654 45566 588888888888888888888888888888888888888765
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.6e-05 Score=77.29 Aligned_cols=219 Identities=13% Similarity=0.126 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHH-HHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSIL-SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
-...+.++..+..+++.|++.+... .+. ...+|...+ .++...|.+......-....+.|-... .-|+.+...
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~--- 300 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKA--- 300 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHH---
Confidence 3445677777888899999988888 666 555555444 456777777776666665555443321 122222222
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHV 695 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 695 (781)
+..+..+|.+.++++.|+..|++.....-.||. ..+....++++...+... -+.|.. .---
T Consensus 301 ------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 301 ------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred ------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 333556778889999999999997765444442 222334455555555442 345653 2222
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
.-...+.+.|++.+|+..+.++ ...| |...|..-..++.+.|++..|..-.+..++++|+.+..|..-+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 3367788999999999999987 3344 6678888888889999999999999999999999999999999999999999
Q ss_pred hhHHhhc
Q 035828 774 KDAVEIG 780 (781)
Q Consensus 774 ~~A~~l~ 780 (781)
++|.+-+
T Consensus 443 dkAleay 449 (539)
T KOG0548|consen 443 DKALEAY 449 (539)
T ss_pred HHHHHHH
Confidence 9998754
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.0002 Score=65.27 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHH
Q 035828 415 NCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLH 494 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (781)
..+++..+..++++...+.+..+.+...-...+.|+++.|++-|+...+-+|..|- ..|+..+..| +.++.+.|.+..
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHH
Confidence 35666667777777644455555555555566788888888888888887756654 4565555444 557788888888
Q ss_pred HHHHHhcCC
Q 035828 495 GLALKSLMG 503 (781)
Q Consensus 495 ~~~~~~~~~ 503 (781)
.+++.+|++
T Consensus 202 SEIieRG~r 210 (459)
T KOG4340|consen 202 SEIIERGIR 210 (459)
T ss_pred HHHHHhhhh
Confidence 888887765
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.0002 Score=66.69 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH-HHHhcC
Q 035828 408 ALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVI---VACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV-ISACGN 483 (781)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l-l~~~~~ 483 (781)
.+-..+...|++.+|+.-|... .+.|+..|.++. ..|...|+..-|+.-+.+.++ .+||...-..- -..+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhh
Confidence 4555667778888888888776 455566665554 467788888888888888887 56875433221 123567
Q ss_pred ccchHHHHHHHHHHHHhc
Q 035828 484 LELAFEGKSLHGLALKSL 501 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~ 501 (781)
.|.++.|..=|+...+..
T Consensus 119 ~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE 136 (504)
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 788888888887777654
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00015 Score=84.82 Aligned_cols=356 Identities=12% Similarity=0.036 Sum_probs=203.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCChhhHHHHHHHhcCccch
Q 035828 410 MHMYINCGDLVAAFSLLQRISHNSDT-SCWNIVIVACTQNGHFQEAIKTFKSMTQQQ-NASPDSVTLVNVISACGNLELA 487 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~ 487 (781)
...+...|++.+|..........+.. .............|+++.+...++.+.... ...|.. .......+...+++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l--~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRL--VLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcch--HHHHHHHHHHCCCH
Confidence 33455566666665555444211100 011112223445566666666655542111 011221 22223334456677
Q ss_pred HHHHHHHHHHHHhcC------CCC--hHHHHHHHHHHHhcCChHHHHHHhhhcCC----CCh----hhHHHHHHHHHhCC
Q 035828 488 FEGKSLHGLALKSLM------GLD--TRVQNALITMYGRCRDIKSASTVFESCYN----CNL----CTWNCMISAFSQNK 551 (781)
Q Consensus 488 ~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~ 551 (781)
+++...+......-- .+. ......+...+...|++++|...++.... .+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 777777666543210 111 11112223445578888888887776431 121 24455566677899
Q ss_pred ChhHHHHHHhhc-C----CCC-C--HhHHHHHHHHhcccCchHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCC
Q 035828 552 AEVRALELFRHL-E----FEP-N--EISIVSILSACTQLGVLRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 552 ~~~~A~~~~~~~-~----~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 619 (781)
++++|...+++. . ..+ . ..++..+...+...|+++.|...++...+. +...... .
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-------------~ 572 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM-------------H 572 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH-------------H
Confidence 999999888877 1 112 1 234445555677889999999988776542 2111110 0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH-
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNS--GIRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH- 694 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~- 694 (781)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+.++|...+++.............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 112344555667789999999999887652 11222 2345556667778999999999998885431111111111
Q ss_pred ----HHHHHHhhhcCChHHHHHHHHhCCCC--CCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhccCC------CCCc
Q 035828 695 ----VCIVDMLGRSGKLQEAYEFIKNLPIQ--PKPG----VWGAMLSACSHHGDTKMGKQVAELLFKLEP------ENVG 758 (781)
Q Consensus 695 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 758 (781)
......+...|+.+.|.+++...... .... .+..+..++...|+.++|...++++..... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445689999999998776321 1111 134566677889999999999999987631 2334
Q ss_pred hHHHHHHHHHhcCChhhHHhhc
Q 035828 759 YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..++.+|.+.|+.++|.+.+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 6778999999999999998764
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=3.1e-06 Score=75.97 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 706 (781)
-..+...|+-+....+....... ..-|......++....+.|++.+|...+++... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 33344444444444444433221 112333333455555555555555555555542 122334555555555555555
Q ss_pred hHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 707 LQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.++|..-+.+. .+.| ++..++.+.-.+.-.||++.|..++..+....+.++.+--+|+.+...+|++++|.++
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555544443 2222 3334455555555555555555555555555555555555555555555555555544
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=6.3e-05 Score=68.48 Aligned_cols=304 Identities=10% Similarity=0.013 Sum_probs=198.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH-H
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV-I 478 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l-l 478 (781)
...-+.+.+..+.+..++.+|.+++..-..+ | +....+.+..+|-...++..|-..|+.+-. ..|...-|... .
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence 3334556666677888888888888765333 4 556677888888888899999999998876 55776666542 3
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHhcCChHHHHHHhhhcCC-CChhhHHHHHHHHHhCCChhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDTRV--QNALITMYGRCRDIKSASTVFESCYN-CNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.++.+.+.+..|..+...|... +.... ...-....-..+++..+..+++..+. .+..+.+.......+.|+++.
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 4566777888888888777543 11111 11111123457888889999998884 444455555555678999999
Q ss_pred HHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH----HHHHHhhhcC--------CC
Q 035828 556 ALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS----SALLDMYSNC--------KS 619 (781)
Q Consensus 556 A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~--------~~ 619 (781)
|++-|+.. |.+| ...|+..+. ..+.++.+.|.....+++..|++..+..- .-.++.-... .-
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999988 4666 345655444 44668999999999999988776322210 0000000000 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.++|.-...+-+.++++.|.+-+-.|.-. ....|++|...+.-.- ..+++.+...-++=++ ++.|= ..++.++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL---~~nPfP~ETFANl 316 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL---QQNPFPPETFANL 316 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH---hcCCCChHHHHHH
Confidence 123444455567789999999988888643 2455778877664222 2345555555555554 45664 4799999
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
+-.||+..-++-|-+++-+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 99999999999999987664
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=7.2e-07 Score=76.42 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=85.7
Q ss_pred HHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 676 QYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 676 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.++++.+ ...|+. +..+...+...|++++|.+.++.+ ...| +...+..+..++...|++++|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555554 335653 556788999999999999999987 4555 56688999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 754 PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 754 p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|+++.++..+|.++...|++++|++.+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999865
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.8e-07 Score=56.14 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
+|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366777777777777777777777777777766
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=0.00027 Score=72.42 Aligned_cols=188 Identities=7% Similarity=-0.035 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC-CC-Cccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh-hHHH---
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISH-NS-DTSC---WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-TLVN--- 476 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~--- 476 (781)
|..+...+...|+.+++.+.+..... .+ +... .......+...|++++|...+++..+.. |+.. .+..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHhHH
Confidence 33344445555666665544444321 11 2211 2222345667889999999999888753 4433 3221
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCC
Q 035828 477 VISACGNLELAFEGKSLHGLALKSLMGLD-TRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKA 552 (781)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 552 (781)
........+..+.+.+.+.. .....|+ ......+...+...|++++|...++... +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111223444445544443 1122233 3344455667888999999999998776 3345677788888999999
Q ss_pred hhHHHHHHhhc-CCC---CCH--hHHHHHHHHhcccCchHHHHHHHHHHHHh
Q 035828 553 EVRALELFRHL-EFE---PNE--ISIVSILSACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~---p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 598 (781)
+++|..++++. ... |+. ..+..+...+...|+.++|..+++.....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999887 433 332 23445677788899999999999887543
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=1.4e-05 Score=86.29 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.++-.|.......|++++|..+++...+ +.||.. .+..+...+.+.+++++|+..+++.++. .|+ ...+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 44555566666666666666666666666 556543 4555556666666666666666666533 555 3555566
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNLP-IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
..++.+.|++++|.++|+++- ..|+ ...+..+...+...|+.++|...|+++++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 666666666666666666652 2332 44555666666666666666666666666653
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=2e-05 Score=70.87 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
|.......+....+.|++.+|+..+.+.... -+||...|+.+.-+|.+.|+.++|..-|.+.++- .|+ +..++++
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L---~~~~p~~~nNl 174 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL---APNEPSIANNL 174 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh---ccCCchhhhhH
Confidence 3334444566666667777777766666653 2445566666666666677777777666666533 443 4556666
Q ss_pred HHHhhhcCChHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 698 VDMLGRSGKLQEAYEFIKNLPI-QP-KPGVWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.-.|.-.|+++.|..++.+... .+ +..+-..+..+....|+++.|+.+...
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666777777666665532 22 444556666666666676666666554
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=3.1e-05 Score=85.01 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCH-----hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHH
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-E-FEPNE-----ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALL 611 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 611 (781)
.|-..|......++.++|.+++++. + ++|.. ..|.++++.-..-|.-+...++|+++.+..-.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~---------- 1529 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA---------- 1529 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----------
Confidence 4444444444445555555554444 2 33321 23334444434444445555555555442211
Q ss_pred HhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-
Q 035828 612 DMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE- 690 (781)
Q Consensus 612 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 690 (781)
-..|..|...|.+.+++++|.++++.|.++ +.-....|...+..+.+..+.+.|..++++.++. -|.
T Consensus 1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~ 1597 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQ 1597 (1710)
T ss_pred --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchh
Confidence 114677777888888889999999988875 4445568888888888888888888888888765 443
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCchHHHHH
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGYYISLS 764 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~ 764 (781)
.......++.-.+.|+.+++..+|+.. . .+-....|+.+++.-.++|+.+.+..+|+++..+. |.....++..=
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 455556667777888888888888766 2 33356688888888889999999999999998776 66666666555
Q ss_pred HHHHhc-CChh
Q 035828 765 NMYVAL-GRWK 774 (781)
Q Consensus 765 ~~~~~~-g~~~ 774 (781)
.-|.++ |+-.
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 555554 5543
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=2.8e-05 Score=70.67 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHh-hhcCC--hH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDML-GRSGK--LQ 708 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~ 708 (781)
.++.++++..++...+. -+.|...|..+...+...|++++|...+++..+ ..|+ ...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 46778888888887763 244677899999999999999999999999874 4676 57888888864 67777 59
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 709 EAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 709 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
+|.+++++. ...| +...+..+...+...|++++|+..|++++++.|++...+-.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999987 5555 556788888889999999999999999999998777665444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=2.7e-05 Score=80.00 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=180.2
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHh
Q 035828 501 LMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSAC 579 (781)
Q Consensus 501 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 579 (781)
+++|-...-..+...+.+.|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+. +-.||..-|..+.+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 345666666778888999999999999998754 6888899999999999999988887 7788999999999988
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
....-++.|.++.+....... ..+.....+.++++++.+.|+.-.+ +.| -..+|
T Consensus 468 ~d~s~yEkawElsn~~sarA~-----------------------r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~w 522 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQ-----------------------RSLALLILSNKDFSEADKHLERSLE--INPLQLGTW 522 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHH-----------------------HhhccccccchhHHHHHHHHHHHhh--cCccchhHH
Confidence 888889999999876543200 0011112346899999999998776 444 44588
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHh
Q 035828 659 ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSH 735 (781)
Q Consensus 659 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 735 (781)
-.+..+..+.+++..|.+.|.... ...|+ ...|+++..+|.+.|+..+|...++++ +. ..+-.+|...+-...+
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 888777788999999999999876 55887 589999999999999999999999887 33 3345578888888889
Q ss_pred cCCcHHHHHHHHHHhccC--CCCCchHHHHHH
Q 035828 736 HGDTKMGKQVAELLFKLE--PENVGYYISLSN 765 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 765 (781)
.|..++|++.+.++.+.. -.++.....+..
T Consensus 600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred cccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 999999999999998764 224444443333
No 116
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00011 Score=71.90 Aligned_cols=207 Identities=13% Similarity=0.119 Sum_probs=139.0
Q ss_pred HHHHHHHhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccC-chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 542 CMISAFSQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLG-VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 542 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
.+-..+...++.++|+.++.++ ...|+..| ++.--..+...| +++++...++.+.+...+.-.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-------------- 107 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-------------- 107 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--------------
Confidence 3334455566777788777777 67776543 333323334445 467777777777765443222
Q ss_pred ChhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 619 SNAAWSSMISAYGYHGK--GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+|+-.--.+.+.|+ .++++++++++.+ ..| |..+|....-++...|+++++++.++++++. .|+ ...|
T Consensus 108 ---aW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW 179 (320)
T PLN02789 108 ---IWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAW 179 (320)
T ss_pred ---HhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHH
Confidence 34433333444454 3678889988887 455 5668888888888889999999999999865 554 4666
Q ss_pred HHHHHHhhhc---CCh----HHHHHHHHhC-CCCC-CcchHHHHHHHHHhc----CCcHHHHHHHHHHhccCCCCCchHH
Q 035828 695 VCIVDMLGRS---GKL----QEAYEFIKNL-PIQP-KPGVWGAMLSACSHH----GDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 695 ~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+.....+.+. |.. +++++...++ ...| +...|+.+...+... ++..+|.....++.+.+|+++.++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 6666555444 222 4566666444 5555 556787777777663 4456799999999998999999999
Q ss_pred HHHHHHHhc
Q 035828 762 SLSNMYVAL 770 (781)
Q Consensus 762 ~l~~~~~~~ 770 (781)
.|+.+|...
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 999999864
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=2.3e-05 Score=74.70 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+...+.+.|++++|+..+++. ...| ....+..++.++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667788999999999988876 2233 2357888889999999999999999888777664
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.004 Score=62.29 Aligned_cols=153 Identities=11% Similarity=0.048 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc---CCCC-CHhHHHHHHHHhcccCchHHHHHHHHH-HHHhCCCCCchHHHHHHH
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL---EFEP-NEISIVSILSACTQLGVLRHGKQIHGH-VFHLGFQENSFISSALLD 612 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 612 (781)
.+|...|+.-.+..-...|..+|.+. +..+ ....+++++..++ .++.+-|.++|+. |.+.|-.|-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--------- 436 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--------- 436 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH---------
Confidence 35555666655655666666666666 2333 4444555555443 2455556666654 333333221
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcC--CC
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYD--VR 688 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 688 (781)
--...++-+...++-..|..+|++....++.||. ..|..++.--..-|+...+.++-+++...+. ..
T Consensus 437 ---------yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe 507 (656)
T KOG1914|consen 437 ---------YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQE 507 (656)
T ss_pred ---------HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhc
Confidence 2244555566677777788888888877666654 4788888777778888888888777766544 33
Q ss_pred CCcchHHHHHHHhhhcCChHH
Q 035828 689 PETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~g~~~~ 709 (781)
|....-..+++.|.-.+.+.-
T Consensus 508 ~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 508 YEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred CCCChHHHHHHHHhhcccccc
Confidence 333444455555555554443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.8e-05 Score=79.90 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=155.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
+.+|--..-..+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|.++..+-.+ -+||..-|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHh
Confidence 34455555566778888999999999999987 6788899999999999999999888777 35888888888
Q ss_pred HHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChh
Q 035828 478 ISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 554 (781)
.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+-+ ..+|-....+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 88888877888888887765322 11222222334678888888887554333 347777777777888888
Q ss_pred HHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.|.+.|..- ...||. ..|+.+-.++.+.++..+|...+++..+.+..+-. .|...+-...+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-----------------iWENymlvsvd 599 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-----------------IWENYMLVSVD 599 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-----------------eeechhhhhhh
Confidence 888888877 677754 45666666777777777777776666665533322 36666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 035828 633 HGKGWEAIELFHEMCN 648 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~ 648 (781)
.|.+++|++.+.++..
T Consensus 600 vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLD 615 (777)
T ss_pred cccHHHHHHHHHHHHH
Confidence 6677777666666654
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.34 E-value=0.0003 Score=65.57 Aligned_cols=290 Identities=10% Similarity=0.120 Sum_probs=152.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHH---HHhcCccchHHHHHHHHHHHHhcCCCChHHHH-HHHHHH
Q 035828 441 VIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVI---SACGNLELAFEGKSLHGLALKSLMGLDTRVQN-ALITMY 516 (781)
Q Consensus 441 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~ 516 (781)
+-..+...|++..|+..|....+- .|+ .|..+. ..|...|+...|..=+....+ .+||-.... .=-..+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~---dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG---DPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC---Cch--hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 445667788999999999888663 244 333322 234444444444444443333 234422211 111234
Q ss_pred HhcCChHHHHHHhhhcCCCChh------hHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHH
Q 035828 517 GRCRDIKSASTVFESCYNCNLC------TWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
.+.|.++.|..-|+.+...++. .+..++. .+ ........+..+...|+...|..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------~~-------------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------IQ-------------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-------HH-------------HHHHHHHHHHHHhcCCchhhHHH
Confidence 5666777776666655432210 1111000 00 00111122233344555555555
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
....+++-.+ -++..|..-..+|...|+...|+.=+....+.. ..+..++.-+-..+...|+
T Consensus 177 ~i~~llEi~~-----------------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 177 MITHLLEIQP-----------------WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCc-----------------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhh
Confidence 5555544222 122345555666777777777776666555421 1223344444555666777
Q ss_pred HHHHHHHHHHhHHHcCCCCCc-c---hHHHH---H------HHhhhcCChHHHHHHHHhC-CCCCCc-----chHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPET-E---HHVCI---V------DMLGRSGKLQEAYEFIKNL-PIQPKP-----GVWGAMLS 731 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~-~---~~~~l---~------~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~ 731 (781)
.+.++...++.+ .+.|+. . .|..| . ....+.++|.++++--++. +..|.. ..+..+..
T Consensus 239 ~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 239 AENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 777777666654 556762 2 22221 1 1234455666666555543 444441 12333444
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.+...|++.+|++.-.+++..+|+|..++...+.+|.....+++|+.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556778888888888888888888888888888777777777765
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=6.6e-06 Score=68.79 Aligned_cols=89 Identities=9% Similarity=-0.027 Sum_probs=76.2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.....+...+...|++++|.++|+-+ ...| +...|-.|.-.+...|++++|+..|.++..++|++|.++.++|..|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45556777788999999999999876 4555 555788888888889999999999999999999999999999999999
Q ss_pred cCChhhHHhhc
Q 035828 770 LGRWKDAVEIG 780 (781)
Q Consensus 770 ~g~~~~A~~l~ 780 (781)
.|+.++|++-+
T Consensus 116 lG~~~~A~~aF 126 (157)
T PRK15363 116 CDNVCYAIKAL 126 (157)
T ss_pred cCCHHHHHHHH
Confidence 99999998643
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=8.3e-06 Score=81.12 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=87.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
....|+..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|++++.+. ...| +...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455566666677888888888887654 354 3445777777777778888887766 3333 4445565666677
Q ss_pred hcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 735 HHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.|+++.|..+++++.+..|++...|..|+.+|.+.|++++|+-.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888887543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=2.7e-05 Score=76.42 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=90.5
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 740 (781)
.....|+.++|+..++.+++. .|+ +.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+.+++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 445568888999999888755 666 455666778888999999999988887 56676 556677888888899999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+|+..++.....+|++|..|..|+.+|..+|+-.+|..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999988899999999999999888888877764
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=3.4e-06 Score=72.18 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 641 ELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
+.+++... ..|+. .....+...+...|++++|.+.++.+... .|+ ...+..+...+...|++++|...+++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 45543 45666777788899999999999998754 454 678888999999999999999998876
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
...| +...+..+...+...|+++.|...++++.++.|+++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4444 4567777888888999999999999999999998877443
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=5.5e-05 Score=83.22 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=164.7
Q ss_pred CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 564 EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 564 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
-..|| ...|...|......++.+.|+++.++.+. -+++-...-. ..|.++++.....|.-+...+
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL-------------NiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL-------------NIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH-------------HHHHHHHhHHHhhCcHHHHHH
Confidence 34564 45677778888899999999999998765 3444333322 257788887778888888999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 035828 642 LFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQ 720 (781)
Q Consensus 642 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 720 (781)
+|++..+ +.-....|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.++++-+.|..+++++ ..-
T Consensus 1519 VFeRAcq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1519 VFERACQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 9999987 333345788999999999999999999999999876 44677999999999999999999999876 333
Q ss_pred C---CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 721 P---KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 721 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
| .......+++...+.||.+.+..+|+..+.-.|.....|.-++..-.++|+.+.++.|+
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3 45677888888899999999999999999999999999999999999999999888875
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.26 E-value=0.0022 Score=75.05 Aligned_cols=325 Identities=12% Similarity=-0.026 Sum_probs=179.4
Q ss_pred hcCCHHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CCChh--hHHHHHHHhcCc
Q 035828 415 NCGDLVAAFSLLQRISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNA-----SPDSV--TLVNVISACGNL 484 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----~p~~~--~~~~ll~~~~~~ 484 (781)
..|+++.+..++..+... .+..........+...|++++|...+......-.. .|... ....+-..+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555444111 12222223334445566777776666665432100 01111 111111224456
Q ss_pred cchHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhcCChHHHHHHhhhcCC-------CCh--hhHHHHHHHHHhCC
Q 035828 485 ELAFEGKSLHGLALKSLMGLDT----RVQNALITMYGRCRDIKSASTVFESCYN-------CNL--CTWNCMISAFSQNK 551 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~l~~~~~~~~ 551 (781)
|+++.+...++.....-...+. ...+.+...+...|++++|...+++... +.. ..+..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 6777777777665542111111 2234445556677888888777765541 111 23444556677788
Q ss_pred ChhHHHHHHhhc-----CC-C---C-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC--CCCchHHHHHHHhhhcCCC
Q 035828 552 AEVRALELFRHL-----EF-E---P-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGF--QENSFISSALLDMYSNCKS 619 (781)
Q Consensus 552 ~~~~A~~~~~~~-----~~-~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 619 (781)
++++|...+++. .. . | ....+..+...+...|+++.|...+.......- .+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-------------- 611 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ-------------- 611 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH--------------
Confidence 888888887765 11 1 1 122233344455667999999888877655321 11111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHH-H-HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSG--IRP--TKSS-V-ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE- 692 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p--~~~~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~- 692 (781)
...+..+...+...|++++|.+.+++..... ... .... . ...+..+...|+.+.|..++...... . .....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~ 689 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-Cccchh
Confidence 1134456667778899999999888875421 111 1101 0 11123344578999999988775421 1 11111
Q ss_pred ---hHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 693 ---HHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 693 ---~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+..+..++...|++++|...++++ +..+. ..+...+..++...|+.++|...+++++++...
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1346777888999999999888766 11111 234555666778899999999999999988744
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=3.6e-05 Score=77.00 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.+..|-..|-..|++++|++.|+..+. ++| |...||-|...+....+.++|+..|++.+ .+.|+ +.....|.-
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGI 506 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhh
Confidence 455666667788999999999999988 677 55689999999999999999999999987 56998 577778888
Q ss_pred HhhhcCChHHHHHHHHhC-C-----------CCCCcchHHHHHHHHHhcCCcHHHHHH
Q 035828 700 MLGRSGKLQEAYEFIKNL-P-----------IQPKPGVWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (781)
.|...|.|+||.+.|-++ . ..++..+|.+|-.++...++.|.+.++
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999999998865443 1 111234777777667667777655444
No 128
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.24 E-value=0.0063 Score=59.56 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=71.3
Q ss_pred HhcccCc-HHHHHHHHHHhHHHcCCCCC-cchHHHHH----HHhhh---cCChHHH---HHHHHhCCCCCCc----chHH
Q 035828 664 ACSHSGL-VDEGLQYYNNMLEEYDVRPE-TEHHVCIV----DMLGR---SGKLQEA---YEFIKNLPIQPKP----GVWG 727 (781)
Q Consensus 664 ~~~~~~~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g~~~~A---~~~~~~~~~~p~~----~~~~ 727 (781)
-+.+.|. -++|+++++.+++ +.|. ..+-+.+. ..|.. ...+.+- ...+++.+++|-. ...|
T Consensus 388 ~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 3445554 6788888888764 3443 22222211 11111 1112222 2335566777643 3456
Q ss_pred HHHHH--HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSA--CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+.++ +..+|++.++...-.=+.+..| +|.+|.++|.....+++++||-+.+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66665 4578999999888877778888 8999999999999999999998765
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00042 Score=62.55 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR 703 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 703 (781)
..+.+..+++-|...+++|++ --+..|.+.|..++.+ .+....|.-+|++|-++ .+|++.+.+-.+.+...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHH
Confidence 344566777777777777774 3345567767666654 23567777777777542 56677777777777777
Q ss_pred cCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCCCCC
Q 035828 704 SGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 704 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 757 (781)
.|++++|..+++++ +...++.+...++-.....| +.+--.+.+.++....|+.+
T Consensus 220 ~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 77788777777766 23334445555555445555 33445556666666667655
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.0007 Score=66.86 Aligned_cols=113 Identities=14% Similarity=0.031 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+....+.+.+.++..+|.+.++++.. ..|+ ....-.+..++.+.|++.+|..+++..... .+-++..|..|.++
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqa 417 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHH
Confidence 355556667777888888888887777 5665 445556667777778888888887776543 23346777888888
Q ss_pred hhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 701 LGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
|.+.|+..+|....-+ .+.-.|+++.|+..+..+.+..
T Consensus 418 y~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 418 YAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 8888877776654433 3556777778877777777665
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0005 Score=62.07 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=110.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh---
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR--- 703 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 703 (781)
...|+..+++++|++...... ..+.... =...+.+..+.+-|.+.+++|.+- -+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345788999999999887722 2222222 233456677889999999999632 234567767766643
Q ss_pred -cCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 704 -SGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 704 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.+.+.+|.-+|+++ +.+|+..+.+....++...|++++|..+++.++..++++|.++.+++..-...|+-.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 45789999999999 478888899999888899999999999999999999999999999999988888876554
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=2.7e-05 Score=67.18 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=52.7
Q ss_pred cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC-CCCCc----chHHHHHHHHHhcCCcHH
Q 035828 668 SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQPKP----GVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 741 (781)
.++...+...++.+.+.++-.|- ......+...+...|++++|...|+... ..|+. ...-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555544211110 1223334455555555555555555541 11221 122334444455556666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 742 GKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|...++.. ...+-.+..+..+|.+|.+.|++++|++.|
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65555442 222334445555666666666666666544
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=5.6e-05 Score=81.86 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc-chHH
Q 035828 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP-GVWG 727 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 727 (781)
+..+...+..|.......|+.++|..+++... ...|+ ......++..+.+.+++++|...+++. ...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 55668889999999999999999999999997 45898 478888999999999999999999887 556654 4567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777888999999999999999999999999999999999999999998764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00011 Score=65.58 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 703 RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
..|++++|+++++.. .-.| |..++..-+......|+...|++-+.+-++..|.|+.+|..|+.+|...|++++|
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 344455555554443 1122 3333444444444444444555555555555555555555555555555554444
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=4.6e-06 Score=51.28 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.7
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCc
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADN 174 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 174 (781)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00013 Score=63.01 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 696 (781)
.|..++..+ ..++...+.+.++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344555555 4789999999999998852 222 234444557788899999999999999876 32232 235556
Q ss_pred HHHHhhhcCChHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLPI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|...+...|++++|+..++.... ...+..+......+.+.|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88999999999999999988632 2345567778888999999999999999863
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=6.3e-05 Score=64.28 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=43.0
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
....++..+...|++++|.+.++.+ ...| +...+..+...+.+.|+++.|...++++.+.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444444455555555555555443 2222 3334444444444555555555555555555555555555555555555
Q ss_pred CChhhHHhh
Q 035828 771 GRWKDAVEI 779 (781)
Q Consensus 771 g~~~~A~~l 779 (781)
|++++|.+.
T Consensus 99 g~~~~A~~~ 107 (135)
T TIGR02552 99 GEPESALKA 107 (135)
T ss_pred CCHHHHHHH
Confidence 555555443
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.7e-06 Score=50.26 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=7.4e-06 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=31.0
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCCCC
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQA 172 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 172 (781)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00058 Score=61.16 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..++-+....|+.+.|...++++... + |.+.-...|- .-+...|++++|.++++.++++ +|+ ..+|..-+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3455555566677777788887777664 2 4433222221 2233467778888888877755 454 456666666
Q ss_pred HhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 700 MLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
..-..|+--+|++-+.+. .+..|...|..+...|...|++++|.--+++++-..|-++-.+..|+..++-.|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 666667766777766655 355677777777777778888888888888888888888877777777766554
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.025 Score=56.86 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=104.1
Q ss_pred hhHHHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCC-CchHHHHHHHhhhcCCChhhHHHHH
Q 035828 553 EVRALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE-NSFISSALLDMYSNCKSNAAWSSMI 627 (781)
Q Consensus 553 ~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~li 627 (781)
.+...+.+++. ..+|+ .+|..++....+..-++.|+.+|.+..+.+..+ .+.+++++++-||.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs----------- 414 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS----------- 414 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-----------
Confidence 45555666666 24454 356777888888888999999999999888777 55655666665543
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 705 (781)
++..-|.++|+-=... ..-+..-....+.-+.+.++-..|..+|++.+.. ++.|+ ..+|..+++.-..-|
T Consensus 415 ------kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 415 ------KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred ------CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcc
Confidence 6778888888864442 2223333444556667778888899999999887 77776 478999998888899
Q ss_pred ChHHHHHHHHhC
Q 035828 706 KLQEAYEFIKNL 717 (781)
Q Consensus 706 ~~~~A~~~~~~~ 717 (781)
++..+.++-++.
T Consensus 487 dL~si~~lekR~ 498 (656)
T KOG1914|consen 487 DLNSILKLEKRR 498 (656)
T ss_pred cHHHHHHHHHHH
Confidence 999888886654
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=48.61 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.+|+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 378888888888888888888888888888877
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.00026 Score=77.56 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=120.9
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHH-HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 537 LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILS-ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 537 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
...|..|+..+...+++++|.++.++. ...|+...+-.+.. .+...++...+..+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------------- 87 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------------- 87 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------------
Confidence 345666666666666666666666655 45565543332222 22333333333222
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
.++.......++..+..+...|.+ ..-+...+..+..+|.+.|+.++|..+++++++- .|+ +.+
T Consensus 88 ----------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~a 152 (906)
T PRK14720 88 ----------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEI 152 (906)
T ss_pred ----------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHH
Confidence 122223334455444455555555 2334457777788888888888888888888744 565 678
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH--------H-
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL--------S- 764 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--------~- 764 (781)
.+.++..|... ++++|.+++.++ +..+...+++..+..+|+++...+|++...+..+ +
T Consensus 153 LNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAITYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 88888888877 888888887664 2225566788888888888888888877764332 2
Q ss_pred -----------HHHHhcCChhhHHhhcC
Q 035828 765 -----------NMYVALGRWKDAVEIGK 781 (781)
Q Consensus 765 -----------~~~~~~g~~~~A~~l~~ 781 (781)
.-|.+.++|+++++++|
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34666678888888765
No 144
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=0.0011 Score=64.90 Aligned_cols=171 Identities=10% Similarity=0.084 Sum_probs=124.8
Q ss_pred HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCC-CH
Q 035828 578 ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHG-KGWEAIELFHEMCNSGIRP-TK 655 (781)
Q Consensus 578 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p-~~ 655 (781)
.+...+..++|....+.+++..... ..+|+..-..+...| +++++++.++++.+. .| +.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~-----------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npkny 106 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGN-----------------YTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNY 106 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-----------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcch
Confidence 3445667788888888877654322 125666556666667 679999999999984 44 33
Q ss_pred HHHHHHHHHhcccCc--HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 656 SSVISLLSACSHSGL--VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
.+|+.....+.+.|+ .++++.+++++++. .|. ..+|.....++...|++++|++.++++ ...| +...|+...
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence 456655444445554 36789999888754 675 578888889999999999999999987 4344 566777777
Q ss_pred HHHHhc---CCc----HHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 731 SACSHH---GDT----KMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 731 ~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
..+.+. |.. +.++....++++.+|++..++..++.+|...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 666554 223 5788888999999999999999999999883
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00011 Score=61.21 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=70.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAML 730 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 730 (781)
++..+...+...|++++|.+.++.+.+...-.|. ...+..++.++.+.|++++|.+.++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666777777777777777655211111 245666777788888888888877765 22333 34566677
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
..+.+.|+.+.|...++++.+..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888888765443
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0011 Score=72.74 Aligned_cols=146 Identities=10% Similarity=0.097 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
++..+..+|.+.|+.++|...|+++.+.. +-|....|.+...+... +.++|.+++.+.+..+=..-...-...+..-+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34445555666666666666666666632 22444566666666555 66666666666554410000000011111111
Q ss_pred hh--cCChHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 702 GR--SGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 702 ~~--~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
+. ..+.+.-..+.+++ +..--+.++..+...|...++++++..+++.+++.+|.|..+...++..|..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 11 11222222222222 2222334455555666677899999999999999999999999999888773
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=5.2e-06 Score=63.60 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+-.+..++.+.|++++|..++++ .+.+|.++.....+|.+|.+.|++++|++++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33344444455555555555555 4444444445555555555555555555543
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.062 Score=57.67 Aligned_cols=465 Identities=12% Similarity=0.043 Sum_probs=210.6
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcchhhhHHHHh--hccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMY--AKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCL 159 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 159 (781)
..+++..|..-...+.+.. |+. .|...+.++ .|.|+.++|..+++... ..|..|...+-..|-..++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 3455666666666665542 322 233334433 36677777777766553 235666666777777777777777
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC
Q 035828 160 LYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC 239 (781)
Q Consensus 160 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 239 (781)
.+|++.... -|+..-...+..++.+.+++..-.+.--.+.+.-+. + ...+=+++..+... .+.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~--~yyfWsV~Slilqs------------~~~ 160 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-R--AYYFWSVISLILQS------------IFS 160 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-c--cchHHHHHHHHHHh------------ccC
Confidence 777766543 344444555555555555544433333333322111 1 11111122211110 000
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHH-HHHhcCCCChHHHHH
Q 035828 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGY-AIRRLLGYDLLMMNS 318 (781)
Q Consensus 240 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 318 (781)
++.... .+ -..-|.+.++.+.+.+|-.-+..-...-+..+...+.+++|..++.. ..+.-..-+...-+.
T Consensus 161 ~~~~~~-~i--------~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 161 ENELLD-PI--------LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred Cccccc-ch--------hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 100000 00 01223444555554442111111222222334456667777777733 333333334455556
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc
Q 035828 319 LMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG 398 (781)
Q Consensus 319 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 398 (781)
-+..+...+++.+..++-.++.. ++...|...+...++.+......|-....+. .+.++...+........
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~-k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~-------~~~l~~~~ek~~~~i~~- 302 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLE-KGNDDYKIYTDSVFKLLELLNKEPAEAAHSL-------SKSLDECIEKAQKNIGS- 302 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHhcccccchhhhhh-------hhhHHHHHHHHHHhhcc-
Confidence 66777777777777777666655 2122266666665555555444433222111 11112222211111111
Q ss_pred CCCchhHHHHHHHHH---HhcCCHHHHHHH-HHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh--
Q 035828 399 FSNNTIGVNALMHMY---INCGDLVAAFSL-LQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-- 472 (781)
Q Consensus 399 ~~~~~~~~~~li~~~---~~~~~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-- 472 (781)
-....|-+-+.+. ..-|+.+++... |+.....| .|..=+..|...=..+.-..++....... ++..
T Consensus 303 --~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~---~~~s~~ 374 (932)
T KOG2053|consen 303 --KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD---DDSSGD 374 (932)
T ss_pred --cccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC---Ccchhh
Confidence 0111222222222 234666665433 33443332 11111222222222222233333332211 1111
Q ss_pred -------hHHHHHH-HhcCcc--chHHHHHHHHHHH---HhcC------CCC---------hHHHHHHHHHHHhcCChH-
Q 035828 473 -------TLVNVIS-ACGNLE--LAFEGKSLHGLAL---KSLM------GLD---------TRVQNALITMYGRCRDIK- 523 (781)
Q Consensus 473 -------~~~~ll~-~~~~~~--~~~~a~~~~~~~~---~~~~------~~~---------~~~~~~li~~~~~~g~~~- 523 (781)
+....+. .+.... +.+....++.++. .+|. -|+ .-+.+.|++.+.+.++..
T Consensus 375 ~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~ 454 (932)
T KOG2053|consen 375 EKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD 454 (932)
T ss_pred HHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 1111111 111111 1222333332222 1221 122 224467888888888766
Q ss_pred --HHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHH
Q 035828 524 --SASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHV 595 (781)
Q Consensus 524 --~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 595 (781)
+|+-+++..... |..+--.+|..|+--|-+..|.++|..+ .++-|...|.. ..-+...|++..+...++..
T Consensus 455 l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 455 LFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHH
Confidence 455555555433 3445556788899999999999999998 26666554432 33445556666666665544
Q ss_pred H
Q 035828 596 F 596 (781)
Q Consensus 596 ~ 596 (781)
.
T Consensus 534 l 534 (932)
T KOG2053|consen 534 L 534 (932)
T ss_pred H
Confidence 3
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=9.7e-05 Score=68.03 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
+.+.+++.+|+..|.+.+ .+.|. ...|..-..+|.+-|.++.|++-.+.. .+.|. ...|.+|..++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445677777777777776 44665 456666677777777777777665554 55554 4467777777777777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 742 GKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
|++.|+++++++|++.....+|.++-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777666555443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=9.4e-05 Score=61.58 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=75.3
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC---CchHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN---VGYYISL 763 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 763 (781)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45777888999999999999999887 33443 2356668888999999999999999999998875 5679999
Q ss_pred HHHHHhcCChhhHHhhc
Q 035828 764 SNMYVALGRWKDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~ 780 (781)
+.+|.+.|++++|++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 83 GMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHhCChHHHHHHH
Confidence 99999999999998865
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=7.4e-05 Score=59.34 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=35.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
++..+...|++++|++.+++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 334444444444444444433 22222 1233333444444444444444444444444444444444444444444444
Q ss_pred hHHh
Q 035828 775 DAVE 778 (781)
Q Consensus 775 ~A~~ 778 (781)
+|.+
T Consensus 86 ~a~~ 89 (100)
T cd00189 86 EALE 89 (100)
T ss_pred HHHH
Confidence 4443
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=3.2e-05 Score=55.76 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
...+.+.|++++|++.++++ ...| +...+..+...+...|++++|..+++++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444555555555555544 2223 23344444444455555555555555555555544
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.73 E-value=0.024 Score=54.45 Aligned_cols=281 Identities=14% Similarity=0.088 Sum_probs=177.7
Q ss_pred HHHHHHHh--cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHhcCChHHHHHHhhhcCC-CCh--hhHHHHHHH
Q 035828 474 LVNVISAC--GNLELAFEGKSLHGLALKSLMGLDTRVQNALITM--YGRCRDIKSASTVFESCYN-CNL--CTWNCMISA 546 (781)
Q Consensus 474 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~ 546 (781)
|..|-.++ ...|+-..|.+.-.+..+. +..|..-.-.|+.+ -.-.|+.+.|.+-|+.|.. |.. .-...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 44444443 3466777777765544321 22343333334433 2346999999999999873 322 233444444
Q ss_pred HHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhH
Q 035828 547 FSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
-.+.|..+.|..+-.+. +..|. .......+...+..|+++.|.++++.-.. .-+.++..- ..-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae--------------R~r 229 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE--------------RSR 229 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--------------HHH
Confidence 56788888888888888 66665 45677888999999999999999877655 334444321 012
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 624 SSMISAYG---YHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 624 ~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
..|+.+-+ -..+...|...-.+..+ +.||.. .-..-.+++.+.|+..++-.+++.+-+. .|.+.+....
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY-- 302 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY-- 302 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--
Confidence 22322221 12345555555444444 777765 3444457888899999999999998654 6666544322
Q ss_pred HhhhcCChHHHHHHHHhC----CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCh
Q 035828 700 MLGRSGKLQEAYEFIKNL----PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL-GRW 773 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 773 (781)
.+.+.|+. +++-+++. .++|+ ..+.-.+..+....|++..|..-.+.+.+..|. ..+|.+|+.+-... |+.
T Consensus 303 ~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDq 379 (531)
T COG3898 303 VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCch
Confidence 23455543 33333332 24554 446667777788899999999999999888887 45788888888777 888
Q ss_pred hhHHhh
Q 035828 774 KDAVEI 779 (781)
Q Consensus 774 ~~A~~l 779 (781)
.++++.
T Consensus 380 g~vR~w 385 (531)
T COG3898 380 GKVRQW 385 (531)
T ss_pred HHHHHH
Confidence 887653
No 154
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.71 E-value=3.1e-05 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=31.2
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 746 AELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 746 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
++++++++|+++.+|..||.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999974
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.0013 Score=65.84 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=81.3
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
+|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++++.... .+-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~ 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE------------------VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQ 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCC
Confidence 34444455555666666666665544 22 1233455556667778888888887753 223
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
|...+..-...|...++.+.|+++.+++.+ ..|+. .+|..|+.+|.+.|++++|+-.++.++
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 455555556667788888888888888874 47764 688888888888888888888887774
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.00033 Score=70.47 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=64.0
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
.+...|++++|++.|+++++. .|+ ...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556666666666666543 444 355666666666677777776666655 3344 3445566666666677777
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.|+..++++++++|+++.....+..+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777666666655433
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.2e-05 Score=45.26 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.2
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCC
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGE 170 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 170 (781)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=3.4e-05 Score=56.49 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-ChhhHHhhc
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG-RWKDAVEIG 780 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~l~ 780 (781)
++..|..+...+...|++++|+..++++++.+|+++.++..+|.+|...| ++++|++-+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999998 688888754
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.00074 Score=70.98 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhccc--------CcHHHHHHHHHHhHHHcC
Q 035828 621 AAWSSMISAYGY--H---GKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHS--------GLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 621 ~~~~~li~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~ 686 (781)
.+|...+.+... . +..+.|+++|++..+ ..|+.. .|..+..++... .++..+.+..++......
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 355555555433 2 347789999999998 678753 444433332211 123444555544332211
Q ss_pred CCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 687 VRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 687 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+|..
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 2234567887877777889999999999987 677888889999999999999999999999999999998853
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=4.5e-05 Score=55.68 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=39.0
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 702 GRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
.+.|++++|++.++++ ...| +...+..++..+.+.|++++|..+++++....|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566677777766665 2333 44455566666666777777777777777777766655555543
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00025 Score=54.83 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=69.4
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHhcCC-CCChhhHHHHHHHHhccC--------cccchhHHHHHHHHhcCCCCcchh
Q 035828 41 WNAMITACVENRCVVMGLHFFGEMVEEGI-RFDSTTLLIIVSALTQMN--------CLKQGRVVHCLSIKAGMIADSSLC 111 (781)
Q Consensus 41 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 111 (781)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++...+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777788999999999999999999 899999999999998664 355678899999999999999999
Q ss_pred hhHHHHhhc
Q 035828 112 NVFVNMYAK 120 (781)
Q Consensus 112 ~~li~~~~~ 120 (781)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=7.7e-05 Score=57.08 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=36.3
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 633 HGKGWEAIELFHEMCNSGI-RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++ . ...|. ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455555555555555221 11233333355555555555555555555 1 12222 23333445555555555555
Q ss_pred HHHHH
Q 035828 711 YEFIK 715 (781)
Q Consensus 711 ~~~~~ 715 (781)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0011 Score=59.19 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 733 (781)
.+..+...+...|++++|...+++.++...-.++ ...+..++.++.+.|++++|+..++++ ...|+ ...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555555555666666666666666543111111 245556666666666666666666554 33332 33344444445
Q ss_pred HhcCC--------------cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 734 SHHGD--------------TKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 734 ~~~g~--------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
...|+ +++|.+.++++.+.+|++ +..++..+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 44444 577888888888888887 5555555555443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.0001 Score=53.10 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=42.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...+...|++++|...++++++..|+++.++..+|.++.++|++++|++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 54 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888764
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.1e-05 Score=43.77 Aligned_cols=30 Identities=43% Similarity=0.633 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGI 651 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 651 (781)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888899999998888888764
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00022 Score=71.77 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
-+..+...|++++|++.++++ ...| +...+..+..++.+.|+++.|+..++++++++|+++.+++.+|.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 456677899999999999987 4555 45577888888999999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 88 eA~~~~ 93 (356)
T PLN03088 88 TAKAAL 93 (356)
T ss_pred HHHHHH
Confidence 999865
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.099 Score=51.32 Aligned_cols=109 Identities=19% Similarity=0.099 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
+.+..|.-+...|+...|.++-.+.+ .||..-|-..+.+++..++|++-.++... +-++.-|..++..+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 34444555555555555555544443 35555555555566555565554443221 12234455555555
Q ss_pred hhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+.|+..+|..++.+++ ...-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 55565555555555531 13334444555555555554443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.00024 Score=63.26 Aligned_cols=89 Identities=8% Similarity=-0.104 Sum_probs=68.4
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...|..++..+...|++++|+..++++ ...|+ ..++..+...+...|++++|...++++.++.|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 355666777777788888888887766 23332 2367778888888999999999999999999998888888888
Q ss_pred HHH-------hcCChhhHHhh
Q 035828 766 MYV-------ALGRWKDAVEI 779 (781)
Q Consensus 766 ~~~-------~~g~~~~A~~l 779 (781)
+|. +.|++++|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 888 77887766543
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0002 Score=66.07 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=74.4
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..-+.+.++|.+|++.+.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|....+|..||.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45567889999999999887 6666 566677778889999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 035828 776 AVEIGK 781 (781)
Q Consensus 776 A~~l~~ 781 (781)
|++-+|
T Consensus 168 A~~ayk 173 (304)
T KOG0553|consen 168 AIEAYK 173 (304)
T ss_pred HHHHHH
Confidence 998653
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.51 E-value=0.00084 Score=56.70 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
....-+...|++++|..+|+-+ -..| +...|..|...+...|++++|+..|..+..++++||.+.++.|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456777777777777654 2222 3445666666666677777777777777777777777777777777777777
Q ss_pred hhHHhh
Q 035828 774 KDAVEI 779 (781)
Q Consensus 774 ~~A~~l 779 (781)
++|++-
T Consensus 122 ~~A~~~ 127 (165)
T PRK15331 122 AKARQC 127 (165)
T ss_pred HHHHHH
Confidence 777653
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.00031 Score=62.69 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=71.5
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...+..+...+...|++++|+..+++. ...|+ ...+..+...+.+.|+++.|...++++.+..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788889999999999999999877 33333 3578888888999999999999999999999999999999999
Q ss_pred HHHhcCCh
Q 035828 766 MYVALGRW 773 (781)
Q Consensus 766 ~~~~~g~~ 773 (781)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 99988873
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.11 Score=50.22 Aligned_cols=241 Identities=13% Similarity=0.170 Sum_probs=144.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCh--hhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 035828 447 QNGHFQEAIKTFKSMTQQQNASPDS--VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKS 524 (781)
Q Consensus 447 ~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 524 (781)
-.|+++.|.+-|+.|... |.. --+..|.-...+.|+.+.|.+.-...-..--. -.....+.+...|..|+|+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 356666676666666542 221 12222333334556666665555544332211 23455667777777888888
Q ss_pred HHHHhhhcC-----CCChh--hHHHHHHHH---HhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccCchHHHHHHH
Q 035828 525 ASTVFESCY-----NCNLC--TWNCMISAF---SQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLGVLRHGKQIH 592 (781)
Q Consensus 525 A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~ 592 (781)
|+++++.-. ++++. .-..|+.+- .-..+...|...-.+. .+.||..- ....-.++.+.|++.++-.++
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 887776443 33332 122222221 1123455566555555 57777543 333455778889999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHhcccCc
Q 035828 593 GHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN-SGIRPT-KSSVISLLSACSHSGL 670 (781)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~~~ 670 (781)
+.+.+....|++. .+..+.+.|+ .++.-+++..+ ..++|| ..+...+..+-...|+
T Consensus 287 E~aWK~ePHP~ia--------------------~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 287 ETAWKAEPHPDIA--------------------LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhcCCChHHH--------------------HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 9998888777753 1122334444 44444444432 125664 4466777778888899
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc-CChHHHHHHHHhC
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS-GKLQEAYEFIKNL 717 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 717 (781)
+..|..--+... ...|....|..|.+.-... |+-.++..++-+.
T Consensus 345 ~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 345 FSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 988888777765 4588888888888877544 8999998888766
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=9.8e-05 Score=53.85 Aligned_cols=59 Identities=20% Similarity=0.395 Sum_probs=37.4
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
..|++++|.+.|+++.+. .|+ ...+..++.+|.+.|++++|.++++++ ...|+...+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456777777777777655 554 456666777777777777777777776 34555443433
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.0086 Score=58.40 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=48.5
Q ss_pred Hhccc-CcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhCC---CC-C----Ccc-hHHHH
Q 035828 664 ACSHS-GLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNLP---IQ-P----KPG-VWGAM 729 (781)
Q Consensus 664 ~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~l 729 (781)
.|... |++++|.+.|++..+-+...-. ..++..++..+.+.|++++|++++++.. .. | +.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 55555 6777777777766554322222 3455666777777777777777776651 11 1 111 11111
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+-.+...||...|.+.+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22334567777777777777777664
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.46 E-value=0.00075 Score=53.32 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGD 738 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 738 (781)
...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33344445555555555544322 222 234444555555555555555555443 2222 22344455555555566
Q ss_pred cHHHHHHHHHHhccCC
Q 035828 739 TKMGKQVAELLFKLEP 754 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p 754 (781)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666555554
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0012 Score=53.50 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---cchHH-HHHHHH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK---PGVWG-AMLSAC 733 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~-~l~~~~ 733 (781)
+..++-..|+.++|+.+|++.+.. |.... ...+..+...|-..|++++|+.++++. ...|+ ..... .+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555677777777777777665 54443 346666777777777777777777765 22243 22222 223344
Q ss_pred HhcCCcHHHHHHHHHHhc
Q 035828 734 SHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~ 751 (781)
...|+.++|..++-.++.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 566777777777766553
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.41 E-value=0.0022 Score=64.45 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=100.4
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh
Q 035828 397 LGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNS-----DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471 (781)
Q Consensus 397 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 471 (781)
.+...+......+++......+++++..++.+....| -..|..++|+.|.+.|..+.++.+++.=..-| +-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-iF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-IFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-cCCCh
Confidence 3455677777788888888888888988888886554 23466799999999999999999999998898 99999
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 035828 472 VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRC 519 (781)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 519 (781)
.|++.+|+.+.+.|++..|.++...|..++...+..++.-.+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988877766766666555555554
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=61.25 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC---ChHHHHHHHHhC-CCCCC-cchHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG---KLQEAYEFIKNL-PIQPK-PGVWG 727 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~~ 727 (781)
|...|..|..+|...|+.+.|...|.+..+. .|+ +..+..+..++..+. ...++.++|+++ ...|+ +....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4445555555555555555555555555432 332 344444444443222 233444555554 33332 22333
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
-+...+...|++.+|...|+.+++..|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 3334444555555555555555555543
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.026 Score=57.76 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=45.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCC-CCCCcc-----------
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQPKPG----------- 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----------- 724 (781)
+...+..-+.+...+..|-++|.+|-+ ..++++.....++|++|..+-++.+ ..|++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 333333334444455555556555521 2345555566666666666655552 333322
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
-+...-.++-++|+..+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234455778888888888887654
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0032 Score=61.03 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA-CSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 68888888999999999999999998643 2233344443333 333577888999999999874 3445778888899
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 701 LGRSGKLQEAYEFIKNL-P-IQPK---PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~-~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+.+.|+.+.|..+|++. . +.++ ...|..++.--.+.|+.+....+.+++.+..|++...
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999987 3 2332 2489999999999999999999999999998885543
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.063 Score=52.38 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-----TKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----- 690 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----- 690 (781)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-++...||.-.|.+.+++.. ...|+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcH
Confidence 35566777888899999999999887643221 121 22333335566789999999988875 33443
Q ss_pred -cchHHHHHHHhhh--cCChHHHHHHHHhC
Q 035828 691 -TEHHVCIVDMLGR--SGKLQEAYEFIKNL 717 (781)
Q Consensus 691 -~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 717 (781)
......|+.++-. ...+++|+.-++.+
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2355566666633 23455555555555
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0025 Score=49.46 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccc--------chhhhhhHHHHHHHhcCCCChHH
Q 035828 245 WNAIIDGFALNGKFEEAFDLLHEMQLMRSV-EPDIATVVTLISLCADSL--------LLREGRSVHGYAIRRLLGYDLLM 315 (781)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 315 (781)
-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.+++. ..-....+++.|...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3455667777799999999999999998 8 999999999999987543 34457788999999999999999
Q ss_pred HHHHHHHHHh
Q 035828 316 MNSLMDFYSK 325 (781)
Q Consensus 316 ~~~ll~~~~~ 325 (781)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0019 Score=57.06 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=70.5
Q ss_pred CCCCHhHHHHHHHHhc-----ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChH
Q 035828 565 FEPNEISIVSILSACT-----QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC--KSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 565 ~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~li~~~~~~~~~~ 637 (781)
...+..+|..++..+. +.|.++=....+..|.+.|+..|..+|+.|++.+=+. .....+-++-. -.-.+-+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~--hyp~Qq~ 120 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM--HYPRQQE 120 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc--cCcHHHH
Confidence 4445556666666553 3466666677778888888888888888888887443 11111111111 1224556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 689999999999999999999999999977653
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.29 E-value=0.0037 Score=62.89 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=57.5
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
+...+..++..+....+++.+..++-......-..+.. ..|..++|+.|...|..+++++++..=.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~--------------~~t~ha~vR~~l~~~~~~~~l~~L~n~~ 130 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLL--------------PSTHHALVRQCLELGAEDELLELLKNRL 130 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccccc--------------CccHHHHHHHHHhcCCHHHHHHHHhChh
Confidence 44555555666666556666665555544431111110 1133456666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
.-|+-||.+|++.|+..+.+.|++..|.+++..|...
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666665443
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.00043 Score=51.32 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
..|.+.+++++|.+.++.+ ...| ++..+......+...|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567778888888887776 4444 444566667777778888888888888888888777665444
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.022 Score=48.66 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=79.6
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEG 674 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 674 (781)
..+..+.|+.. +...-+.+...|.+..--.|.+.+...|++.+|...|++...--+--|......+.++....+++-.|
T Consensus 65 a~~q~ldP~R~-~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERH-LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHH-HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33444555543 34444444444555555556666666666666666666665433334555555566666666666666
Q ss_pred HHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 675 LQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 675 ~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
...++++.+. .|. +.....+.+.|...|++.+|..-|+.. ..-|+...-.....-+.+.|+.++|..-+..+.
T Consensus 144 ~~tLe~l~e~---~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 144 QQTLEDLMEY---NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhhc---CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6666665433 232 344555566666666666666555544 333443333223333445555555544444433
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0036 Score=55.64 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSA 732 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 732 (781)
..+..+...+...|++++|...+++.+....-.++ ..++..+..++...|++++|++.++++ ...|+ ...+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35555666666677888888887777644111111 246777777777888888888777765 33333 3344455444
Q ss_pred HH-------hcCCcH-------HHHHHHHHHhccCCCCC
Q 035828 733 CS-------HHGDTK-------MGKQVAELLFKLEPENV 757 (781)
Q Consensus 733 ~~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 757 (781)
+. ..|+++ +|..+++++...+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 54 666665 55666666777777543
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0012 Score=58.31 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=82.6
Q ss_pred hhHHHHhhhh--cCCCcchhhHHHHHHHh-----cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC---------
Q 035828 24 ESSLALFYET--CNKDVVTWNAMITACVE-----NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN--------- 87 (781)
Q Consensus 24 ~~a~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--------- 87 (781)
..-.+.|+.. ...|..+|..+|+.|.+ +|..+-....+..|.+-|+.-|..+|+.||..+=+..
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345667765 66788999999999885 4778888899999999999999999999999886522
Q ss_pred -------cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC
Q 035828 88 -------CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD 123 (781)
Q Consensus 88 -------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 123 (781)
..+-|.+++++|...|+-||..++..|++.|++.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 245678999999999999999999999999987654
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.0013 Score=62.37 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAM 729 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 729 (781)
..|...+.-..+.|++++|...|+.+++.+.-.+- +..+..++..|...|++++|...|+.+ ...|+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 35665555456679999999999999977322221 357889999999999999999999887 22332 3345556
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+..+...|++++|...++++.+..|++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 6677789999999999999999999977543
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.004 Score=60.11 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=100.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcccCcHHHHHHHHHHhHHHcCCCCCcchH---HH------
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA--CSHSGLVDEGLQYYNNMLEEYDVRPETEHH---VC------ 696 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~------ 696 (781)
.++...|++++|...-...++ +.++. .+..++++ +.-.++.+.|...|++.+ ...|+...- ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 445677888888877666654 23321 23333333 334678888998888876 456662211 11
Q ss_pred ----HHHHhhhcCChHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 697 ----IVDMLGRSGKLQEAYEFIKNL-PIQPKPG-----VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 697 ----l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
=.....+.|++.+|.+.+.+. .+.|+.. .|.....+..+.|+..+|+.--+.+.+++|.-..++..-+..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 123456788999999888876 5566433 344444455678999999999999999999988899999999
Q ss_pred HHhcCChhhHHhh
Q 035828 767 YVALGRWKDAVEI 779 (781)
Q Consensus 767 ~~~~g~~~~A~~l 779 (781)
+...++|++|.+=
T Consensus 331 ~l~le~~e~AV~d 343 (486)
T KOG0550|consen 331 HLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.0044 Score=65.31 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHhcc--c---CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc--------CChHHHHHHHHh
Q 035828 651 IRPTKSSVISLLSACSH--S---GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS--------GKLQEAYEFIKN 716 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 716 (781)
...|...|...+++... . ++.+.|..+|++.++. +|+ ...|..+..++... +++.++.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 55677888888887543 2 3477999999999855 888 35666655544332 123344444444
Q ss_pred C-C---CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 717 L-P---IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 717 ~-~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
. . ...++..+..+.-.....|++++|...++++.+++| +...|..+|.+|...|+.++|.+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 1 223445666666666678999999999999999999 5789999999999999999998765
No 192
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.17 E-value=0.51 Score=51.12 Aligned_cols=224 Identities=9% Similarity=0.014 Sum_probs=120.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHH--HhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHH
Q 035828 187 LGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMY--SQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEA 261 (781)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 261 (781)
.+++..|......+.+..+ ...|..++.++ .+.|+.++|..+++... ..|..|...+-..|...++.++|
T Consensus 22 ~~qfkkal~~~~kllkk~P-----n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP-----NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 3444555555554444432 12333444443 45788888887777664 23677777888888888888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHhhC
Q 035828 262 FDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNS-LSKAELLFNAIA 340 (781)
Q Consensus 262 ~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 340 (781)
..+|++... ..|+..-...+..++.+.+++.+-.++--++.+ ..+-+...+-++++.+..... .+.+..
T Consensus 97 ~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~------ 166 (932)
T KOG2053|consen 97 VHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD------ 166 (932)
T ss_pred HHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc------
Confidence 888888876 557766677777777777766655544444433 233344555555555433211 000000
Q ss_pred CCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc-CCCchhHHHHHHHHHHhcCCH
Q 035828 341 PMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG-FSNNTIGVNALMHMYINCGDL 419 (781)
Q Consensus 341 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~ 419 (781)
.+.- ..|......+.+.+ ..-+..-.-.....+...|++
T Consensus 167 ---------~i~l-------------------------------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 167 ---------PILL-------------------------------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred ---------chhH-------------------------------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 0111 12222333333222 111111111222334556778
Q ss_pred HHHHHHHHh-hcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 035828 420 VAAFSLLQR-ISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ 465 (781)
Q Consensus 420 ~~a~~~~~~-~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 465 (781)
++|++++.. .-.. .+...-+--+..+...+++.+..++-.++...+
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 888887732 2111 233334455666777788888888888887766
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0056 Score=58.09 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
.|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+...|. ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5666666667789999999999999883 4543 46777888889999999999999999877544444 466667
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
++..+...|++++|.+.+++. ..-|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 788888999999999998876 3445543
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.00069 Score=43.83 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
..+..+...+...|++++|+++++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999999998875
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.011 Score=55.71 Aligned_cols=152 Identities=13% Similarity=0.025 Sum_probs=103.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-H---HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHh
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKS-S---VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDML 701 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 701 (781)
...+...|++++|++.|+++... .|+.. . .-.+..++.+.+++++|...+++.++.++-.|+. ..+-.++.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34456789999999999999984 44332 2 2456678899999999999999999886666654 3333333322
Q ss_pred hhc---------------CCh---HHHHHHHHhC-CCCCCcch-----------HH-------HHHHHHHhcCCcHHHHH
Q 035828 702 GRS---------------GKL---QEAYEFIKNL-PIQPKPGV-----------WG-------AMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 702 ~~~---------------g~~---~~A~~~~~~~-~~~p~~~~-----------~~-------~l~~~~~~~g~~~~A~~ 744 (781)
... .+. .+|++.|++. ..-|++.. -+ .+..-|.+.|++..|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 111 122 3455555554 22232211 01 12333668899999999
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHhcCChhhHHhhc
Q 035828 745 VAELLFKLEPEN---VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 745 ~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
-++.+++.-|+. +.++..++.+|.+.|..++|.+..
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999988764 456778889999999999998754
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.06 Score=46.12 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---Ccch
Q 035828 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGV 725 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 725 (781)
.-|+.-.-..|..++...|+..+|...|++... |+-. |......+.++...-++...|...++++ ..+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777889999999999999999999875 4444 5678889999999999999999999887 2233 3345
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.-.+.+.+...|.+++|+..++.+..-.|+ +..-...+..+.++|+.++|..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 666788899999999999999999988877 6677778888999999888764
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.002 Score=47.61 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=25.9
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+...++++.|.++++++++.+|+++..+..+|.+|.+.|++++|.+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 51 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED 51 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH
Confidence 44555555555555555555555555555555555555555555543
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.017 Score=46.98 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhh
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLG 702 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 702 (781)
+..++...|+.++|+.+|++..+.|..... ..+-.+...+...|++++|..++++....+.-.+.. .....+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445567889999999999999998877653 366778888999999999999999998763221112 23333456778
Q ss_pred hcCChHHHHHHHHh
Q 035828 703 RSGKLQEAYEFIKN 716 (781)
Q Consensus 703 ~~g~~~~A~~~~~~ 716 (781)
..|+.++|++++-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999988754
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.62 Score=48.79 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=43.5
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC----CCCCCcchHHHHHHHHHh---cCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSH---HGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.++..|.+--...|..+.|+..--.+ .+-|-..+|..+.-+.+. -|--.+|.--++....++...-+-|..|+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La 1101 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLA 1101 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 34445556667778888887653322 234444555555444333 45666666666665555555555566666
Q ss_pred HHHHhc
Q 035828 765 NMYVAL 770 (781)
Q Consensus 765 ~~~~~~ 770 (781)
--.+..
T Consensus 1102 ~~iFsk 1107 (1189)
T KOG2041|consen 1102 FRIFSK 1107 (1189)
T ss_pred HHHhcc
Confidence 544433
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.93 E-value=0.00096 Score=48.70 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=36.8
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEP 754 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 754 (781)
..|..+...+...|++++|+..+++. ...| ++..+..+..++...| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666554 2333 3445556666666666 56666666666666665
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.91 E-value=0.52 Score=46.85 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGA 728 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 728 (781)
..|++.++.-.-.-+. .+.|++.+|..++-++....+|++|.+.+.+++ |+..+++.
T Consensus 474 sqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 3456665554444333 346666666666666666666666666666652 44444433
No 202
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.91 E-value=0.0068 Score=51.13 Aligned_cols=94 Identities=5% Similarity=-0.081 Sum_probs=65.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 733 (781)
..-.+..-+...|++++|..+|+-+.. +.|. ...|..|.-++-..|++++|++.+..+ .+.| ++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344444555667888888888877753 4665 466677777777888888888887766 3344 455666777777
Q ss_pred HhcCCcHHHHHHHHHHhccC
Q 035828 734 SHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~ 753 (781)
...|+.+.|.+.++.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 77888888888888777665
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.13 Score=52.93 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHHhHH
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKS-----------SVISLLSACSHSGLVDEGLQYYNNMLE 683 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 683 (781)
......+++++|..+-++..+ +.||.. -|.-.-.+|.++|+..+|..+++++..
T Consensus 781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 334455666666666665544 344432 123333577778888888888887643
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.85 E-value=0.17 Score=47.83 Aligned_cols=172 Identities=11% Similarity=0.051 Sum_probs=105.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC-CCccc-H---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN-SDTSC-W---NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 483 (781)
....+...|++++|.+.|+.+... |+... - -.+..++.+.+++++|...+++..+..+-.|+. -+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence 334456789999999999998554 53322 1 345678899999999999999999876444443 23333333221
Q ss_pred --c---------------cch---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH
Q 035828 484 --L---------------ELA---FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCM 543 (781)
Q Consensus 484 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 543 (781)
. .+. ..|...+ ..+++-|-.+.-..+|...+..+...=...--.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1222333 3334444444444445444433321111111234
Q ss_pred HHHHHhCCChhHHHHHHhhc-C----CCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 544 ISAFSQNKAEVRALELFRHL-E----FEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 544 ~~~~~~~~~~~~A~~~~~~~-~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
..-|.+.|.+..|+.-++.+ . .......+..+..++...|..+.|......+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 56688899999999988888 2 33345567778889999999999988876554
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.76 E-value=0.68 Score=45.91 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH-HH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV-CI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l 697 (781)
..+|...++...+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+-=+.. -||...|. -.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3478888888888888999999999999988 6678889998886665 57888999999876544 45654443 45
Q ss_pred HHHhhhcCChHHHHHHHHhC--CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 698 VDMLGRSGKLQEAYEFIKNL--PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+..+.+-++-+.|..+|+.. ++..+ ..+|..++.--..-|+...+..+-+++.++.|.....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 56667888888999999855 22223 5678889888888999999999999999988875433
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.71 E-value=0.091 Score=52.81 Aligned_cols=186 Identities=11% Similarity=0.140 Sum_probs=108.5
Q ss_pred HhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 548 SQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 548 ~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
-+..++..-+++-++. ++.||-.+.-.++ +-.....+.++++++++..+.|-..
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~------------------------ 233 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS------------------------ 233 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh------------------------
Confidence 3444555555555555 6677654433322 2233455778888888776644211
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 706 (781)
+.+....+..-..++.+......|-..+-..|..++.+.|+.++|.+.+++|.+.+...-...+...|+..|...++
T Consensus 234 ---lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 234 ---LGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred ---hchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 00000001111122223333344445555667778888999999999999998763221224677889999999999
Q ss_pred hHHHHHHHHhCCC--CCCcc--hHHHHHHHHHhcCCc---------------HHHHHHHHHHhccCCCCCchHH
Q 035828 707 LQEAYEFIKNLPI--QPKPG--VWGAMLSACSHHGDT---------------KMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 707 ~~~A~~~~~~~~~--~p~~~--~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+.++..++.+... -|... .|...+-.....||. ..|.+...++.+.+|.-|....
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 9999999988731 23322 344433333333432 3456788888898888766543
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.0036 Score=62.29 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG----VWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.|+ ...+..+..+|.+.|++++|+..+++. .+.|+.. .|..+..+|.+.|+.++|+..+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 467777777788888888888877764 5666643 36777777777788888888888887763
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.021 Score=55.23 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHh---HHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCcc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNM---LEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-------P-IQPKPG 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 724 (781)
.|..|...|.-.|+++.|+..-+.- .+++|-+.. ...+..|..++.-.|+++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555566777666554432 223343333 356667777777777777776665532 1 111233
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhhHHh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+..++.++|.-..++++|+.+..+=+.+. .....++..|+++|...|..++|+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 45556666666666777776666544331 2345566677777777777776654
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.58 E-value=0.047 Score=50.11 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=99.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhh
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIR-P-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLG 702 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 702 (781)
....+...|++.+|++.|+.+...--. | -....-.++.++.+.|+++.|...+++.++.++-.|.. ..+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344467889999999999999975211 1 12356677889999999999999999999886666653 33333433332
Q ss_pred h-----------cCChHHHHHHHHhC-CCCCCcchH------------------HHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 703 R-----------SGKLQEAYEFIKNL-PIQPKPGVW------------------GAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 703 ~-----------~g~~~~A~~~~~~~-~~~p~~~~~------------------~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
. .+...+|+..|+.+ ..-|++.-. -.++.-+.+.|.+..|...++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 22344666666655 112221110 11244467899999999999999999
Q ss_pred CCCCCch---HHHHHHHHHhcCChhhHHh
Q 035828 753 EPENVGY---YISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 753 ~p~~~~~---~~~l~~~~~~~g~~~~A~~ 778 (781)
.|+.+.. ...++.+|.+.|..+.|.+
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9986654 6678888999999887654
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.4 Score=46.95 Aligned_cols=136 Identities=6% Similarity=-0.109 Sum_probs=74.0
Q ss_pred hcccCCchhhhhh-----hcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhhcCC-
Q 035828 362 LCSQFSFSTLLAI-----LPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCG---DLVAAFSLLQRISHN- 432 (781)
Q Consensus 362 ~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~- 432 (781)
-|+..+...|..+ +..+...+.+..|.++-.++...-..- ..+|.....-+.+.. +-+-+.++-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4666666655543 344455566666666655553222122 566666666666653 233344444555321
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CChhhHHHHHHHhcCccchHHHHHHHHHHH
Q 035828 433 SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNAS---PDSVTLVNVISACGNLELAFEGKSLHGLAL 498 (781)
Q Consensus 433 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (781)
....+|..+..--...|+.+-|..+++.=...+.-. .+..-+...+.-+...|+.+....++-.+.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 355667788877778899998888876432222111 112234445555666666666665554443
No 211
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.55 E-value=0.0083 Score=58.20 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCcchHHHHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR-SGKLQEAYEFIKNL--PIQPKPGVWGAMLSA 732 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 732 (781)
.+|-.+++...+.+..+.|..+|++..+. -..+..+|...+..-.+ .++.+.|.++|+.. ....+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888999999999999999999632 22245667777776445 56777799999987 355677789999999
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+.|+.+.|..+++++...-|.+. ..|......-.+.|+++...+|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999877655 57888888888889988887764
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.2 Score=48.99 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cch
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISL-------------LSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEH 693 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~ 693 (781)
..++.+.|+..|++-+. +.|+...-..+ ..-..+.|++..|.+.|.+.+ +++|+ ...
T Consensus 215 y~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~nakl 289 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKL 289 (486)
T ss_pred cccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHH
Confidence 45677777777777765 45554322211 123446788999999999886 66776 346
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHH--HHhcCCcHHHHHHHHHHhccCCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSA--CSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
|........+.|+.++|+.--+.. .+.| ..+.--+.++ +...++++.|++-++++.++..+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777777888999999998877765 3333 2333334333 33478999999999999887644
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.42 E-value=1.1 Score=44.17 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=61.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH
Q 035828 410 MHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE 489 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 489 (781)
|.-+...|+...|.++.++. .-|+..-|-..+.+++..++|++-..+... . -++..|..++.+|.+.|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHHHHHHCCCHHH
Confidence 33345556666666666665 446666677777777777777665544321 1 123666667777777777766
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHH
Q 035828 490 GKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTV 528 (781)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 528 (781)
|..+...+ + +..-+..|.++|++.+|.+.
T Consensus 256 A~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 256 ASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 66666551 1 13456778888888887665
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.067 Score=50.25 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CCcHHHHHHHHHHhccCCCCCchHH
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH---GDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+ ...|..|...|...|+.+.|..-+.+. .+.| ++..+..+..++..+ ....++..+++++++++|.++.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 665 689999999999999999999988877 4444 455666777666542 3678899999999999999999999
Q ss_pred HHHHHHHhcCChhhHHhhc
Q 035828 762 SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l~ 780 (781)
.|+..++.+|++.+|...|
T Consensus 232 lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred HHHHHHHHcccHHHHHHHH
Confidence 9999999999999998766
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.02 Score=52.97 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=81.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-cchHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK-PGVWGAML 730 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 730 (781)
.|+.-+. +.+.|++..|.+.|..-++.+.-.+ .+..+.+|..++...|++++|..+|..+ +..|. +..+--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5776664 4566889999999999988743332 2578889999999999999999887665 44443 34666777
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
......|+.++|...|+++.+..|+.+.+-..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 77788999999999999999999998776544
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.033 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP--TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
|+.-+.. .+.|++..|..-|....+..-.- ....+--|..++...|++++|..+|..+.++++-.|. +..+.-|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5554444 35666888888888887742110 1235556777888888888888888888877666665 477778888
Q ss_pred HhhhcCChHHHHHHHHhC
Q 035828 700 MLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~ 717 (781)
...+.|+.++|-..+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 888888888888777766
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.25 E-value=0.022 Score=45.40 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=54.8
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CC-CcchHHHH---HHHHHhc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QP-KPGVWGAM---LSACSHH 736 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p-~~~~~~~l---~~~~~~~ 736 (781)
++...|+.+.|++.|.+.+ .+-|. ...|++-.+++--+|+.++|++=+++. .. -| .-....++ ...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 5566777777777777765 33554 466777777777777777777666654 11 11 11111111 2224556
Q ss_pred CCcHHHHHHHHHHhccCCCCCchH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
|+.+.|..-++.+-+++..-....
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHH
Confidence 777777777777776665544333
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.25 E-value=2 Score=45.31 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
|..|..--...|.++.|++.--.+.+-..+-|...+|+.|.-+-+..
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 33333444456677777665544433223445556666665544433
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.24 E-value=0.062 Score=49.34 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=80.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC----CCCCCcc-hHHHHHHHHH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPKPG-VWGAMLSACS 734 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~ 734 (781)
....+...|++++|.+.|+.+...+...|- ......++.++.+.|++++|+..+++. +..|... .+-.++.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344566789999999999999988555554 467778999999999999999988875 3334322 2222222221
Q ss_pred -----------hcCCcHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHhcCChhhHHh
Q 035828 735 -----------HHGDTKMGKQVAELLFKLEPENVGY-----------------YISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 735 -----------~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~ 778 (781)
..+...+|...++.+++..|+++.. -..++..|.+.|++..|+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 1234568999999999999998876 2346777999999988864
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.20 E-value=2 Score=44.80 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=109.6
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
+..+|..-+.--.+.|+.+...-+++...-.--.-+ ..|-..+.-....|+.+-|..++..-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-----------------efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-----------------EFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-----------------HHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 345566666666667777777666665432111101 135555666666688888887777666
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHH---HHHHhC-CCCCC
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAY---EFIKNL-PIQPK 722 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~ 722 (781)
+--++-...+...-..-+-..|+...|..+++.+..+ . |+. ..-.--+....+.|+.+.+. +++... ...-+
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccC
Confidence 5433222222222222233468999999999998766 2 663 33334455566788888777 444433 12222
Q ss_pred cchH----HHHHHH-HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 723 PGVW----GAMLSA-CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 723 ~~~~----~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.... -.+.+- +...++.+.|..++.++.+..|++-..+..+......++
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2222 222222 223688999999999999999998888888887766554
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.17 E-value=0.49 Score=46.98 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=81.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc---------cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH---------SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR 703 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 703 (781)
.|+.++|++++..+....-.++..+|..+.+.|-. ....++|...|.+.. .+.|+...=-+++..+.-
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 79999999999997766677788888888765532 234778888888764 556764333334444444
Q ss_pred cCChH----HHHHHH---HhC----C---CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 704 SGKLQ----EAYEFI---KNL----P---IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 704 ~g~~~----~A~~~~---~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
.|... +..++- ..+ + ...+-..+.++..++.-.||+++|.+.++++.++.|+.=.
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 44322 222222 111 1 2233345577888888999999999999999999877433
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.08 E-value=0.063 Score=44.21 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCN---------------SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
..++.++|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34688899999999999999888876531 124577778888888888888888888888888888
Q ss_pred cCCCCCcchHHHHHH
Q 035828 685 YDVRPETEHHVCIVD 699 (781)
Q Consensus 685 ~~~~p~~~~~~~l~~ 699 (781)
++++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 876666667776664
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.0056 Score=45.94 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
++..+...+...|++++|++.++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555555444
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.042 Score=53.62 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=40.4
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
++.+|.-++.+.+++.+|++.-++. .. ++|+..+-.-..++...|+++.|...++++.++.|+|-.+...|..+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3445555555555565555554443 22 2344444455555555566666666666666666665555555554433
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.26 Score=44.54 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhh
Q 035828 508 VQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
.|.....+|....++++|...+.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlk 56 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLK 56 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 344444556666666666655544
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.02 E-value=0.051 Score=45.07 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHhhhcCChHHHHHHHHhC--C--CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch---HHHHHHHHH
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL--P--IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY---YISLSNMYV 768 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~--~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~ 768 (781)
-.....+.|+|++|++.|+.+ . ..| ....--.++.++.+.|+++.|...+++.++++|.++.+ ++..|..+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 333444556666666665555 1 111 11233445555666666666666666666666554442 444444444
Q ss_pred hc
Q 035828 769 AL 770 (781)
Q Consensus 769 ~~ 770 (781)
++
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 43
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.047 Score=47.11 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...++..+...|+++.|...+++++..+|-+...+..++.+|.+.|+..+|++++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455555666777777777777777777777777777777777777777776654
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.94 E-value=0.17 Score=42.14 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=54.5
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CcchHHHHHHHH--Hhc--
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGVWGAMLSAC--SHH-- 736 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~--~~~-- 736 (781)
.+.|++++|.+.|+.+..++...|- ...-..|+.+|.+.|++++|+..+++. ++.| ++. |-....++ ...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHHhh
Confidence 4456777777777776655444443 345556666777777777776666554 2233 222 22222221 122
Q ss_pred -------------CCcHHHHHHHHHHhccCCCCCchH
Q 035828 737 -------------GDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 737 -------------g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+....|...++++++..|+++.+-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 226788888999999999877543
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.22 Score=46.70 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=72.4
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHH---HHHHHHhcCCc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGA---MLSACSHHGDT 739 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 739 (781)
.....|+..+|...|...... .|. ...-..++.+|...|+.+.|..++..++..-....+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 455678888888888887755 444 46667788888888888888888888754333333322 12222232222
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
..... +++-...+|+|...-+.|+..|...|+.++|.+.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222 2333355788888888888888888888888764
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=3 Score=44.57 Aligned_cols=135 Identities=13% Similarity=-0.010 Sum_probs=85.7
Q ss_pred hcCCCCChhhHHHH-----HHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC---hhhHHHHhccCCC-
Q 035828 66 EEGIRFDSTTLLII-----VSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD---LNSSECTFSGMHC- 136 (781)
Q Consensus 66 ~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~- 136 (781)
.-|++.+..-|..+ |.-+...+.+..|.++...+-..-..- ..+|.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 45777766666554 666677788888888888774322222 4566666666665532 2334444444444
Q ss_pred -CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCC----CCcchHHHHHHHhhccCChhHHHHHHHHHH
Q 035828 137 -ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQ----ADNVSLSSAVAASACLGELSYGKVIHALGI 201 (781)
Q Consensus 137 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 201 (781)
....+|..+.+.....|+++-|..+++.=...+-. .+..-+...+.-+...||.+....++-.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46678888888888999999999988764443321 233445666777777788777666555444
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.91 E-value=0.017 Score=43.26 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=39.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC----CC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVR----PE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+++.+...+...|++++|+..+++.++..... |+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666666667777777777777665432111 22 45677788888888888888887765
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=95.90 E-value=0.33 Score=49.01 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=105.2
Q ss_pred HHHHHHHHh-----cCChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHhc---------ccCcHHHHHHHHHHhHHHcCC
Q 035828 624 SSMISAYGY-----HGKGWEAIELFHEMCN-SGIRPTKS-SVISLLSACS---------HSGLVDEGLQYYNNMLEEYDV 687 (781)
Q Consensus 624 ~~li~~~~~-----~~~~~~A~~~~~~m~~-~g~~p~~~-~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~ 687 (781)
..++.+... ....+.|+.+|.+... +.+.|+.. .|..+..++. ...+..+|.+..++.. .+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---el 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hc
Confidence 445555443 2245778889999882 23677643 3333322221 1334566777777665 44
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.|+ +.....+..++.-.++++.|..+|+++ ...|+. ..|....+.+..+|+.+.|.+..+++++++|....+-..--
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 664 677778888888888899999999988 567764 46777777788899999999999999999999877766555
Q ss_pred HH-HHhcCChhhHHhhc
Q 035828 765 NM-YVALGRWKDAVEIG 780 (781)
Q Consensus 765 ~~-~~~~g~~~~A~~l~ 780 (781)
++ .+-...+++|+.++
T Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHcCCchhhhHHHH
Confidence 55 33344567777664
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=3.4 Score=44.83 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCccc----HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 035828 214 TNSLISMYSQCGDIEAAERAFWGMTCKDVVS----WNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCA 289 (781)
Q Consensus 214 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~ 289 (781)
...-|..+.+..-++-|..+-+.-.-+ ..+ .......+.+.|++++|...|-+-... +.|.. ++.-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhc
Confidence 344566666666677777766544322 222 222334566789999999988776543 45542 445555
Q ss_pred cccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 290 DSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+....
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~ 459 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK 459 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC
Confidence 666667777788888888876 566677899999999999999888877653
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.82 E-value=0.12 Score=47.46 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCCHhHHHHHHHHhcc-----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChH
Q 035828 565 FEPNEISIVSILSACTQ-----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC--KSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 565 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~li~~~~~~~~~~ 637 (781)
-+-|..+|.+.+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+. .....+....-.|-+ +-+
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~--QQ~ 140 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQ--QQN 140 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCch--hhh
Confidence 34455566655555432 345566666788899999999999999999888654 222233333333333 334
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 589999999999999999999999999988764
No 235
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.72 E-value=4.2 Score=44.70 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=58.0
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 633 HGKGWEAIELFHEMCNSG-IRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
..+.+.|..++....... +.+.. ..+..+.......+..++|...++..... ..+......-++.-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566667776654332 22222 13333333333332245666666554321 2233444455555557777777
Q ss_pred HHHHHHhCC--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 710 AYEFIKNLP--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 710 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
+...+..|. ......-.--+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777762 11111222334455555777777777777763
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.43 Score=43.63 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-----chHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-----EHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ 696 (781)
.-+.++..+.-.|.+.-...++.+..+...+-+......|.+.-...||.+.|..+|++..+. .-..+. ....+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345567777778888888899999988655567777788888888899999999999987665 333332 22333
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
....|.-++++.+|...+++.. ..| ++...|.-.-...-.|+...|++..+.+....|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 4455677888999988888873 223 3334444443444578999999999999999887443
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.60 E-value=1.8 Score=41.02 Aligned_cols=214 Identities=17% Similarity=0.194 Sum_probs=115.9
Q ss_pred CChHHHHHHhhhcCCCC-----hhhHHHHHHHHHhCCChhHHHHHHhhc-C--CCC-CHhHHHHHHHHhcccCchHHHHH
Q 035828 520 RDIKSASTVFESCYNCN-----LCTWNCMISAFSQNKAEVRALELFRHL-E--FEP-NEISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~--~~p-~~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
+....+...+....... ...+......+...+....+...+... . ..+ ....+..........++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444544444433211 345556666677777777777776666 2 233 23344444445555566666666
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHh
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMIS-AYGYHGKGWEAIELFHEMCNSGIRP----TKSSVISLLSAC 665 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~ 665 (781)
.+.........+.. ....... .+...|+++.|...+.+... ..| ....+......+
T Consensus 117 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 117 LLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHH
Confidence 66665554443311 1222222 56667777777777777644 232 222333333334
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
...++.+.+...+....+. .|+ ...+..+...+...+++++|...+... ...|+ ...+......+...|+.+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 178 EALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence 4566677777777766543 333 455666666666666677776666554 33333 3334444444445556677
Q ss_pred HHHHHHHHhccCCC
Q 035828 742 GKQVAELLFKLEPE 755 (781)
Q Consensus 742 A~~~~~~~~~~~p~ 755 (781)
+...+.+..+..|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777777666665
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=95.55 E-value=0.094 Score=52.70 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhh---------cCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 670 LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGR---------SGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
..+.|+.+|.+....-..+|+ ...|..+..++.. .....+|.++.+++ ...| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 567888899988744356787 4666666655432 22344556666555 4555 5556666666677788
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+.+.|..+++++..++|+.+.++...+++....|+.++|++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999999999999999999999999999864
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.40 E-value=0.37 Score=38.88 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=78.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.-.|..++..++..+...+ .+..-+|-+|--...+-+-+-..+.++.+-+-+.+.| -.-.-.++.+|...|...+
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHH-
Confidence 3458888889998888752 2344455555555555566667777776633322221 1234456666666665443
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 711 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+.-+..+.++|+.++-.+++..+.+.+..+|.....++.+|.+-|+..+|.+++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 34445666778889999999999888877778888999999999999999888876
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.4 Score=37.68 Aligned_cols=129 Identities=10% Similarity=0.086 Sum_probs=89.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHH-----HHHhhh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCI-----VDMLGR 703 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 703 (781)
++..++.++|+.-|..+.+.|...=++ ............|+...|...|+++-.. .|.+.....+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 467789999999999999887653222 2222233456789999999999999654 3433333222 234678
Q ss_pred cCChHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 704 SGKLQEAYEFIKNLPI---QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 704 ~g~~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.|-|++....++.+.. +-....-..|.-+..+.|++.+|.+++..+.. +...|.....
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 9999999888887732 22344557777788899999999999999876 4333333333
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.22 E-value=7.3 Score=44.30 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred CChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHh----cccCchHHHHHHHHHH
Q 035828 520 RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSAC----TQLGVLRHGKQIHGHV 595 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~ 595 (781)
|++++|+.-+.++. ...|.-.++.--++|.+.+|+.++ .|+...+..+..+| .....++.|.-.|+..
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-----KPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 45555555544443 224444555555666666666664 56666555544433 3344455554444332
Q ss_pred HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhcccCcHHH
Q 035828 596 FHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS--VISLLSACSHSGLVDE 673 (781)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~~~~~~ 673 (781)
-+ ....+.+|...|++.+|+.+..+|.. .-|... -..|+.-+...+++-+
T Consensus 966 Gk-------------------------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 966 GK-------------------------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred cc-------------------------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 11 22234555666777777777666642 222222 2456666677777777
Q ss_pred HHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 674 GLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|-+++.+-... ....+..|++...|++|+.+....
T Consensus 1018 Aa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 77777665432 334555667777788877765544
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.78 Score=42.04 Aligned_cols=137 Identities=9% Similarity=0.000 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH--
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT-- 514 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-- 514 (781)
..+.++..+.-.+.+.-.+..+++.++.. .+-+......+.+.-.+.||.+.|...+++..+..-+.+....+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566666777778888888888888764 455566667777777888888888888887776554445444444432
Q ss_pred ---HHHhcCChHHHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHH
Q 035828 515 ---MYGRCRDIKSASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVS 574 (781)
Q Consensus 515 ---~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ 574 (781)
.|.-.+++.+|...++++... +++.-|.-.-++.-.|+..+|++.++.| +..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 344566777777778777633 4445554444455567788888888888 56666554443
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.20 E-value=0.58 Score=49.26 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=106.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHH
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEM 646 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m 646 (781)
+..+++...=.||-+.+.+.+....+. ++.... ..|+-. .|...+..++. ....+.|.++++.+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~l---a~L~LL--------~y~~~~~~~~~~~~~~~~~~~a~~lL~~~ 259 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPL---AALVLL--------WYHLVVPSFLGIDGEDVPLEEAEELLEEM 259 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHH---HHHHHH--------HHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 344555555566777777766655442 111111 111111 34444444433 56788899999999
Q ss_pred HhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhCC--CCC
Q 035828 647 CNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQP 721 (781)
Q Consensus 647 ~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 721 (781)
.+ --|+...|...- +.+...|++++|.+.+++....-..-|. ...+-.+...+.-..+|++|.+.+..+. ..-
T Consensus 260 ~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 260 LK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 98 578877766554 4456689999999999976532111222 3456678888999999999999998883 233
Q ss_pred CcchHHHHHHHHH-hcCCc-------HHHHHHHHHHhccC
Q 035828 722 KPGVWGAMLSACS-HHGDT-------KMGKQVAELLFKLE 753 (781)
Q Consensus 722 ~~~~~~~l~~~~~-~~g~~-------~~A~~~~~~~~~~~ 753 (781)
+..+|.-+..+|. ..|+. ++|.++++++..+.
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 3444544444443 47887 88888888877543
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.4 Score=37.46 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
....+|..+...+.......+++.+...| ..+...++.++..+++. +.++..+.++. .++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34567777888889999999999999876 36777889999888876 34555555542 22344455688888
Q ss_pred hhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHH-GDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.+.+.++++.-++.+++. +...+..+... ++.+.|++.+.+ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888999999999988753 33333334444 889999998886 3466677777766553
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.15 E-value=0.24 Score=40.81 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh-c-----------------CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRI-S-----------------HNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQ 464 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~-~-----------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 464 (781)
..++..+|.++++.|+++....+++.. . ..|+..+..+++.+|+.++++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456667777777777777777776544 0 0134444555555555555555555555555444
Q ss_pred CCCCCChhhHHHHHH
Q 035828 465 QNASPDSVTLVNVIS 479 (781)
Q Consensus 465 ~~~~p~~~~~~~ll~ 479 (781)
-+++.+..++..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 334444444444443
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=0.3 Score=46.83 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCC--cch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN-SGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPE--TEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~ 693 (781)
+|-.+.+++.+.-++.+++.+-..-.. .|..|- .....++..++.-.+.++++++.|+...+-..- +|. ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344555555555566666655444333 233331 123344556666667888888888877654222 222 467
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-------CCCC-----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCch
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-------PIQP-----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGY 759 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 759 (781)
+..|...|.+..++++|.-+..++ ++.. ...+.-++.-++...|+...|.+.-+++.++. ..|..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888888888888888887665443 2221 12234455666778888888888888888764 333333
Q ss_pred ----HHHHHHHHHhcCChhhHH
Q 035828 760 ----YISLSNMYVALGRWKDAV 777 (781)
Q Consensus 760 ----~~~l~~~~~~~g~~~~A~ 777 (781)
..-++++|...|+.+.|-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHH
Confidence 445788888888877664
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.13 Score=44.31 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 693 (781)
+...++..+...|++++|+.+++.+.. ..| |...|..++.++...|+..+|.+.|+++.+ ++|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455566777788999999999998887 445 667888899999999999999888887643 3577787543
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.81 E-value=3.4 Score=38.35 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----
Q 035828 630 YGYHGKGWEAIELFHEMCNSGI-RP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR---- 703 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 703 (781)
-...|++++|.+.|+.+..... .| ..-+...++.++.+.++++.|+...++..+.++-.|+.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 4578999999999999997521 11 344677778899999999999999999998877777752 2222222221
Q ss_pred ---cCChHHHHHHHHhC-------C---CCCCcch-----------H-HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 704 ---SGKLQEAYEFIKNL-------P---IQPKPGV-----------W-GAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 704 ---~g~~~~A~~~~~~~-------~---~~p~~~~-----------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
..+...+.+.+..+ + ..||+.. . -.+.+-|.+.|.+..|..-++++++.-|+.+.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 22333333333333 2 2233221 1 12344467899999999999999999777555
Q ss_pred h---HHHHHHHHHhcCChhhHHhhc
Q 035828 759 Y---YISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~---~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+ +..+..+|.+.|-.++|.+..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHH
Confidence 4 556667899999999998753
No 249
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.42 E-value=1.4 Score=39.21 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
+||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.--|++..|.+-+...-+. +|+.. |.+|---
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~LWLY 174 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSLWLY 174 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHHHHH
Confidence 678888888899999999999999987 45532 22222223445578999998877666443 55432 2222222
Q ss_pred h-hhcCChHHHHHHHH-hCCCCCCcchHHHHHHHH-HhcCCcHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhc
Q 035828 701 L-GRSGKLQEAYEFIK-NLPIQPKPGVWGAMLSAC-SHHGDTKMGKQVAELLFKLEPEN-------VGYYISLSNMYVAL 770 (781)
Q Consensus 701 ~-~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 770 (781)
+ .+.-+..+|..-+. +.. .-+...|...+-.+ ..+=..+ .+++++..-..++ ..+|+.|+..|...
T Consensus 175 l~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 34447778876544 432 22323343332222 2111112 2222222222222 34788999999999
Q ss_pred CChhhHHhhcC
Q 035828 771 GRWKDAVEIGK 781 (781)
Q Consensus 771 g~~~~A~~l~~ 781 (781)
|+.++|..++|
T Consensus 251 G~~~~A~~LfK 261 (297)
T COG4785 251 GDLDEATALFK 261 (297)
T ss_pred ccHHHHHHHHH
Confidence 99999998875
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.42 E-value=1.6 Score=37.26 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhH
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 682 (781)
..++.+++..+++.+.- ++|.......+- .-+...|+|.+|..+|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34555555555555554 444443322221 12334455555555555543
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.42 E-value=0.15 Score=46.90 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHHhhhhc--CCCcchhhHHHHHHHh-----cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC------------
Q 035828 27 LALFYETC--NKDVVTWNAMITACVE-----NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN------------ 87 (781)
Q Consensus 27 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 87 (781)
+..|...+ ..|-.+|-+++..|.. .+.++-.-..++.|.+-|+.-|..+|+.||..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3466678888887765 3567777788999999999999999999998875432
Q ss_pred ----cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh-hhHHHHhccC
Q 035828 88 ----CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL-NSSECTFSGM 134 (781)
Q Consensus 88 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 134 (781)
.-+-+..++++|...|+-||..+-..|+++|++.+-. .+..++.-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345678899999999999999999999999877653 2333443333
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.34 Score=47.58 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 629 AYGYHGKGWEAIELFHEMCNS-----GIRP---------TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
.|.+.|++..|..-|++.... +..+ -..++..+..++.+.+++.+|++...+.++ ..|+ ...
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KA 293 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKA 293 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhH
Confidence 467889999998888875431 1111 123677788888999999999999999875 3554 677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHh--cCCcHHHHHHHHHHhccCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH--HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 754 (781)
+..=..++...|+++.|+..|+++ ...|+......-+..|.+ ....+...+.|..|+...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888889999999999999999988 688887777666666654 3455666889999998765
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.32 E-value=1.1 Score=47.09 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTK-----SSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPET 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~ 691 (781)
.+..+++..+=.|+.+.+++++.+..+.+ +.-.. ..|...+..+.. ..+.+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 46677778888899999999998876532 32221 134444444432 45789999999999866 6775
Q ss_pred chHH-HHHHHhhhcCChHHHHHHHHhCCC-CC-----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH-HHH
Q 035828 692 EHHV-CIVDMLGRSGKLQEAYEFIKNLPI-QP-----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY-ISL 763 (781)
Q Consensus 692 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~l 763 (781)
..|. .-.+.+...|+.++|++.++++-. +. ....+-.+.+.+.-.+++++|...+.++.+.+.-+...| +..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4443 455677889999999999997621 11 233455667777889999999999999999876544444 456
Q ss_pred HHHHHhcCCh-------hhHHhhc
Q 035828 764 SNMYVALGRW-------KDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~-------~~A~~l~ 780 (781)
+-.|...|+. ++|.+++
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHH
Confidence 6678888988 7776654
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.26 E-value=0.067 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46677888888999999999999999998875
No 255
>PRK09687 putative lyase; Provisional
Probab=94.19 E-value=5.8 Score=38.46 Aligned_cols=240 Identities=9% Similarity=-0.111 Sum_probs=135.9
Q ss_pred HHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCccc----chhHHHHHHHHhc
Q 035828 28 ALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLK----QGRVVHCLSIKAG 103 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~ 103 (781)
.+++.+..+|.......+.++...|..+ +...+..+.. .+|...-...+.++++.|+.. ++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 3444456777777777777887776543 3333444433 346666666777777777643 345555544332
Q ss_pred CCCCcchhhhHHHHhhccCCh-----hhHHHHhc-cCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 104 MIADSSLCNVFVNMYAKCGDL-----NSSECTFS-GMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 104 ~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.++..+-...+.+++..+.- .++...+. .+..++...--..+.++.+.++ ..++..+-.+.+ .++...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 46666666666666655421 22333332 2334455555566677777776 455666555554 2455555
Q ss_pred HHHHHHhhccCC-hhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 035828 178 SSAVAASACLGE-LSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNG 256 (781)
Q Consensus 178 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 256 (781)
...+.+++..+. ...+...+..+. . +++..+....+.++.+.|+....-.+.+.+..++ ..-..+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L---~--D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAML---Q--DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh---c--CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 556666665431 223333333333 1 2347777778888888887554444444444444 3446677777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 035828 257 KFEEAFDLLHEMQLMRSVEPDIATVVTLISLC 288 (781)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 288 (781)
.. +|+..+..+... .||...-...+.+|
T Consensus 250 ~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 74 677777777763 34665555555444
No 256
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=18 Score=44.73 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCc
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNL 484 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~ 484 (781)
|-.+...|..-+++|....+.......|+ ...-|......|++..|...|+.+.+.+ |+ ..+++.++......
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~---p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD---PDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC---CccccchhhHHHhhhcc
Confidence 33444577777777777666653212222 2233445667788888999999888754 44 56677666666666
Q ss_pred cchHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH
Q 035828 485 ELAFEGKSLHGLALKSLMGLDTRVQ-NALITMYGRCRDIKSASTVFESCYNCNLCTWNCM 543 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 543 (781)
+.+.......+-..... .+...-+ +.=+.+--+.++++...+... ..+...|...
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 66655554333332221 1112222 222333356677776666554 4444455544
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=3.5 Score=37.68 Aligned_cols=89 Identities=10% Similarity=-0.043 Sum_probs=50.9
Q ss_pred CCCChh----hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC--hhhH
Q 035828 467 ASPDSV----TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN--LCTW 540 (781)
Q Consensus 467 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 540 (781)
..||.. .|.....+|....+++++...+....+. .+.+...|.+ ....+.|.-+.+++..-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 567754 4555566788888888888876665532 1222222221 123344555555554322 2355
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc
Q 035828 541 NCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
+-....|..+|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 66677777888777776666655
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=93.87 E-value=0.87 Score=38.99 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=68.4
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCC
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 738 (781)
...+...|++++|..+|+-+.- ..|. ...+..|..++-..|++++|++.+.-+. ...|+...-.....+...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3445678999999999998763 3554 5667788888889999999999987651 12334445556667788999
Q ss_pred cHHHHHHHHHHhccCCCCC
Q 035828 739 TKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~ 757 (781)
.+.|...++.+.+ .|.+.
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999999988 45543
No 259
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.74 E-value=0.32 Score=47.45 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=69.6
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHh-------CCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc----C--CCC
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKN-------LPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL----E--PEN 756 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~ 756 (781)
...|.+|...|.--|+++.|+..-+. .+-.. ....+..+.+++.-.|+++.|.+.|+....+ . ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 57899999999999999999876432 22221 2335677788888899999999999887654 3 346
Q ss_pred CchHHHHHHHHHhcCChhhHHhhc
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
....+.|++.|.-...+.+|++.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 778899999999999999998753
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.63 E-value=0.075 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778888888999999999999999998863
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.58 E-value=8.8 Score=38.45 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcc------cHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCChhhH
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTS------CWNIVIVACTQ---NGHFQEAIKTFKSMTQQQNASPDSVTL 474 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~p~~~~~ 474 (781)
.+.-.++-+|....+++...++++.+..-|+.. .-....-++.+ .|+.++|+.++..+.... ..++..||
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHH
Confidence 333455557888999999999999986555221 12234455666 789999999999965555 66777777
Q ss_pred HHHHHHh
Q 035828 475 VNVISAC 481 (781)
Q Consensus 475 ~~ll~~~ 481 (781)
..+-+.|
T Consensus 221 gL~GRIy 227 (374)
T PF13281_consen 221 GLLGRIY 227 (374)
T ss_pred HHHHHHH
Confidence 6665543
No 262
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.56 E-value=0.29 Score=49.30 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS----SVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
+...|+.+..+|...|++++|+..|++..+ +.|+.. +|..+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455899999999999999999999999888 678753 5899999999999999999999998864
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.49 E-value=3.1 Score=43.23 Aligned_cols=103 Identities=12% Similarity=0.038 Sum_probs=66.7
Q ss_pred HHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
....++|+++.|.++.++.. +...|..|.......|+.+-|.+.|.+.+ -+..|+-.+.-.|+.+.-.++.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHH
Confidence 44567888888888877665 45588888888888999888888888762 24455555566677666666666
Q ss_pred HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 594 HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.....|- +|....++.-.|+.++..+++.+-
T Consensus 398 ~a~~~~~----------------------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEERGD----------------------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHTT-----------------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHccC----------------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555542 445555555667776666665443
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=7.7 Score=42.29 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCChh---hHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCc
Q 035828 510 NALITMYGRCRDIKSASTVFESCYNCNLC---TWNCMISAFSQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
..-++.+++...++.|..+-+.-..+... ........+.+.|++++|...|-+. | +.|..+ +.-+.....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-----i~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-----IKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-----HHHhcCHHH
Confidence 34455566666666666666543322111 1222233456788888888877666 6 777544 334445555
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
...-..+++.+.+.|+...-+ -..|+.+|.+..|+.-.+..
T Consensus 413 IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHH
Confidence 555666677777878764433 33444444444333333333
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.30 E-value=2.9 Score=43.37 Aligned_cols=160 Identities=13% Similarity=-0.005 Sum_probs=104.1
Q ss_pred HHhhCCChhhHHHHHH-HHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 148 GCLHNNYPEKCLLYFR-EMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
...-.++++.+.++.+ .-.-..++ ..-...++.-+.+.|..+.|.++... | ..-.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~-----~~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P-----DHRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H-----HHHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h-----HHHhHHHHhcCC
Confidence 3455778888776665 11111122 33466777777788888888776432 1 233445668999
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHH
Q 035828 227 IEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306 (781)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 306 (781)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.+.-.|+.+...++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999988876 556899999999999999999999998765 45666667778888888888777666
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 307 RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 307 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.|- +|....++.-.|+.++..+++.+..+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 553 45555666667899998888877644
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=1.5 Score=41.36 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=104.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCCh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 707 (781)
....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-.+ ..+ ......-+..+.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~---~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ---AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc---chhhHHHHHHHHHHHHHHHhcC
Confidence 457799999999999988742 223456777888999999999999999876322 111 12223445667777777
Q ss_pred HHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCChhh
Q 035828 708 QEAYEFIKNLPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 708 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+..++-.+....| |...--.+...+...|+.+.|.+.+-.+++.+ -++...-..|..++..-|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 77777777775566 55566777777888999999999999988875 6678888888888887775544
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.26 E-value=0.14 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=68.9
Q ss_pred HHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC----chHHHHHHHHHhc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV----GYYISLSNMYVAL 770 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 770 (781)
-.-++...|+++.|++.|.+. -.+.++..|+.=.+++.-.|+.++|..-+++++++.-+.. .++...+.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345678999999999999876 3455777899999999999999999999999999973323 2477889999999
Q ss_pred CChhhHHh
Q 035828 771 GRWKDAVE 778 (781)
Q Consensus 771 g~~~~A~~ 778 (781)
|+-++|+.
T Consensus 129 g~dd~AR~ 136 (175)
T KOG4555|consen 129 GNDDAARA 136 (175)
T ss_pred CchHHHHH
Confidence 99999975
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=3.2 Score=36.57 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVIS--LLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVC 696 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 696 (781)
|..++.... .+.. +.....+.+...+-......+.. +...+...+++++|...++..+.. .-| ...--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHH
Confidence 444444432 2333 56666677765422222223333 345677889999999999887532 222 122335
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|.+.....|.+|+|+..++...-+. .+.....-.+.+...|+.++|...|+++...+++++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 6778899999999999998763111 222334446678899999999999999999885544
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.04 E-value=2.8 Score=35.72 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=74.3
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.++..+...+.......+++.+...+. .+.. .++.++..|++.+ ..+.++.+.. .+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~----------------~~~~li~ly~~~~-~~~ll~~l~~------~~ 67 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPA----------------LQTKLIELYAKYD-PQKEIERLDN------KS 67 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchh----------------HHHHHHHHHHHHC-HHHHHHHHHh------cc
Confidence 455555556667777777777776653 3333 3555555555543 3344444442 23
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc-CChHHHHHHHHhCCCCCCcchHHHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS-GKLQEAYEFIKNLPIQPKPGVWGAMLSA 732 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 732 (781)
+.......++.|.+.+-++++..++.++- . +...+..+... ++.+.|++.+.+. .++..|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 44556667778888888888888887652 1 33344444444 7888888887763 244467666655
Q ss_pred HH
Q 035828 733 CS 734 (781)
Q Consensus 733 ~~ 734 (781)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=3.5 Score=39.51 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH----HHHHHhhhcCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV----CIVDMLGRSGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 707 (781)
..|++.+|...++++.+. .+.|...++.-=.+|...|+.+.-...+++++.. -.|+...|. .+.-++.+.|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457788888888888775 5667777877778888888888888888887643 255544443 344556788899
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 708 QEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 708 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|.+.-++. .+.| |...--+....+...|+..++++...+-...=.. -..-|-+.+..|...+.++.|++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999888876 4444 4444455666667788888888887765433211 1122445666677778888888876
No 271
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.59 E-value=1.8 Score=38.46 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=56.8
Q ss_pred hhcCChHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhh
Q 035828 702 GRSGKLQEAYEFIKNLPIQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.|+ ++|.+.|-++...| +.......+..+....|.++++.++-+++++.++ ||.++..|+.+|.++|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34455 67887777774444 3344555566677789999999999999998633 68899999999999999998
Q ss_pred H
Q 035828 776 A 776 (781)
Q Consensus 776 A 776 (781)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.58 E-value=23 Score=40.58 Aligned_cols=112 Identities=12% Similarity=0.164 Sum_probs=61.9
Q ss_pred CCCCHHHHHHH----HHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcc--
Q 035828 651 IRPTKSSVISL----LSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPG-- 724 (781)
Q Consensus 651 ~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-- 724 (781)
.+|+...+... ..-|...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++....+-.
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~ 1000 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVI 1000 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHH
Confidence 45555544333 3344445666666666655411 2234556667777777777777664332222
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
....|+..+...+++-+|-+++++... +|. .-...|++...|++|+.+
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~------~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS-DPE------EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc-CHH------HHHHHHhhHhHHHHHHHH
Confidence 236666677777777777776666432 122 233455666666666654
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.35 E-value=0.1 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChhhHHhhc
Q 035828 759 YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..||.+|.+.|++++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y 22 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYY 22 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3677888888888888888775
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=1 Score=42.84 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=85.1
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchH----HHHHHHHHhcCCcH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVW----GAMLSACSHHGDTK 740 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~----~~l~~~~~~~g~~~ 740 (781)
-.|+..+|-..++++++++ +.|...+.-.=+++.-.|+.+.-...+++. + -.|+.+.+ ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888889999998762 334455555556777788888777777776 3 25555433 23333456799999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+|++..+++.+++|.|.=+.-.++.++...|+++|+.+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 999999999999999999999999999999999998763
No 275
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.95 E-value=0.073 Score=45.72 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhH
Q 035828 79 IVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKC 158 (781)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 158 (781)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++....++.... .-...++..|-+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556666666777777776665555666777777777777666777776663322 2334455555555555555
Q ss_pred HHHHHHH
Q 035828 159 LLYFREM 165 (781)
Q Consensus 159 ~~~~~~m 165 (781)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.75 E-value=17 Score=37.03 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=30.1
Q ss_pred cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 736 HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.++.+.+...+.++.+..|....++..++..+...
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999888876654
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.54 E-value=4 Score=41.72 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHhccC-CCCCchHHHHHHHHHh
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSHHGDTKMGKQVAELLFKLE-PENVGYYISLSNMYVA 769 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 769 (781)
..|..++-+.|+.+||++.++++ +..|. ..+...++..+...+.+.++..++.+--+.. |.+....++-+.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 35667777889999999988887 33332 2356778888888999999999988876554 7777777666555433
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.40 E-value=0.55 Score=39.17 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCCcchHHHH-HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 702 GRSGKLQEAYEFIKNL-PIQPKPGVWGAM-LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
...++.+++..+++.+ .+.|+......+ ++.+...|++++|.++++++.+..|..|..--.++..+...|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 5688999999999888 356665544333 33466789999999999999888888887778888888888764
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.17 E-value=0.27 Score=29.84 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
+..+...+.+.|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775433
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.17 E-value=1.7 Score=37.05 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHh---cccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHH
Q 035828 653 PTKSSVISLLSAC---SHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWG 727 (781)
Q Consensus 653 p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 727 (781)
.+..+.+.|+..+ .+.++.+++..++..+. -+.|.. ..-..-...+.+.|+|.+|+.+|+++ ...|......
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 3445666666554 45789999999999986 458874 34444556678999999999999998 4566666677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
.|...|.....-..=..+.+++.+..+ ++.+...+..+..
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 777777765554455555666666555 3444444444433
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.11 E-value=19 Score=36.41 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhC-CCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLG-FQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
.|...+.+..+..-++.|+.+|.++.+.| +.+++.+++++++-++ .|+..-|..+|+-=..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-----------------~~d~~ta~~ifelGl~- 460 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-----------------TGDRATAYNIFELGLL- 460 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-----------------cCCcchHHHHHHHHHH-
Confidence 34445555555556666777777766666 4455554444444443 2455555555554332
Q ss_pred CCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH
Q 035828 650 GIRPTKSS-VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 650 g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
.-||... .+-.+.-+.+.++-+.|..+|+...++..-.--..+|..+++--..-|++..|..+=
T Consensus 461 -~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 461 -KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred -hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 2333322 222333444556666666666655443111111356666666656666665555443
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.09 E-value=0.12 Score=44.31 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=57.4
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhcc
Q 035828 42 NAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121 (781)
Q Consensus 42 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 121 (781)
..+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++ ..+..-...++..+.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhc
Confidence 44677777778888888888888876656667778888888888776666666655 22224445666666666
Q ss_pred CChhhHHHHhccCC
Q 035828 122 GDLNSSECTFSGMH 135 (781)
Q Consensus 122 ~~~~~a~~~~~~~~ 135 (781)
|.+++|.-++..+.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77766666665553
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.94 E-value=16 Score=35.48 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=10.4
Q ss_pred HHhcCCcHHHHHHHHHH
Q 035828 733 CSHHGDTKMGKQVAELL 749 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~ 749 (781)
+.+.++++.|.++++-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666643
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.74 E-value=0.3 Score=26.97 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCChhhHHhhc
Q 035828 758 GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.....|+.++..+|++++|++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45678888899999999988775
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.20 E-value=8.5 Score=33.51 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC--hhhHHHHhccCC
Q 035828 58 LHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD--LNSSECTFSGMH 135 (781)
Q Consensus 58 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 135 (781)
.++.+.+.+.+++|+...|..++..+.+.|.+. .+..+.+.++-+|.......+-.+..... ..-+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 466777778889999999999999999888644 44556666666666554444433332211 222333444332
Q ss_pred CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035828 136 CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKL 203 (781)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 203 (781)
..+..++..+...|++-+|+++.+..... +......++.+....+|...--.++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 25677788889999999999998875321 1222344566666666655555555544443
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.80 E-value=0.43 Score=28.36 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+|..+...+...|++++|...++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777778888888888888888888774
No 287
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.75 E-value=17 Score=34.63 Aligned_cols=169 Identities=10% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 035828 343 NDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAA 422 (781)
Q Consensus 343 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 422 (781)
|...+.+..+..++.--+..|.+++..-+..++..+...-...+... |..|+. +...+.+|
T Consensus 87 p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~----------------Y~~LVk---~N~~Vv~a 147 (292)
T PF13929_consen 87 PQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFN----------------YWDLVK---RNKIVVEA 147 (292)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchH----------------HHHHHH---hhHHHHHH
Confidence 44445555666666655666666666655555544322221111111 222221 12234556
Q ss_pred HHHHHhhcCC----CCcccHHHHHHHHHh-CCC-hHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHH
Q 035828 423 FSLLQRISHN----SDTSCWNIVIVACTQ-NGH-FQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGL 496 (781)
Q Consensus 423 ~~~~~~~~~~----~~~~~~~~li~~~~~-~~~-~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (781)
+++|+....+ .|......+++.... .+. ...-.++.+-+...-+..++..+...++..++..+++....+++..
T Consensus 148 L~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~ 227 (292)
T PF13929_consen 148 LKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQ 227 (292)
T ss_pred HHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6666543221 133333344443333 111 1111222222222211344445555555555555555555555544
Q ss_pred HHHh-cCCCChHHHHHHHHHHHhcCChHHHHHHhh
Q 035828 497 ALKS-LMGLDTRVQNALITMYGRCRDIKSASTVFE 530 (781)
Q Consensus 497 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 530 (781)
.... +..-|...|..+++.....|+..-..++.+
T Consensus 228 ~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 228 CIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4433 334445555555555555555444444443
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.70 E-value=0.77 Score=29.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
.+...|...|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.20 E-value=37 Score=36.95 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHH-hcCccchHHHHHHHHHHHH
Q 035828 451 FQEAIKTFKSMTQQQNASPDSVTLVNVISA-CGNLELAFEGKSLHGLALK 499 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~ 499 (781)
...|..+++...+.|...+-...-.+...+ .....+.+.|...+..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456666777666665332222222223333 4455666666666666654
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.95 E-value=5 Score=35.69 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCCc----ch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPET----EH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~----~~ 693 (781)
.+..+.+.|.+.|+.+.|++.|.++.+....|... .+..+|+.....+++..+...+.+....... +++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56778888889999999999999988865555433 5667777888888888888888877544211 1111 12
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|..| .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 234577888888777665
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.88 E-value=18 Score=33.02 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHHHhccCCC
Q 035828 737 GDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~ 755 (781)
+|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555554
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.71 E-value=21 Score=33.38 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhhcC-----CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHH-H
Q 035828 507 RVQNALITMYGRCRDIKSASTVFESCY-----NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILS-A 578 (781)
Q Consensus 507 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~-~ 578 (781)
.........+...+.+..+...+.... ......+......+...++...+...+... ...++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 344444445555555555555554432 112233444444444555555555555555 222221 11111111 4
Q ss_pred hcccCchHHHHHHHHHHHHhCCCCC-chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--H
Q 035828 579 CTQLGVLRHGKQIHGHVFHLGFQEN-SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT--K 655 (781)
Q Consensus 579 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~ 655 (781)
+...|+++.+...+..... ..|. .. ....+......+...++.+.++..+...... .|+ .
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 202 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNE-------------LAEALLALGALLEALGRYEEALELLEKALKL--NPDDDA 202 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccc-------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--Ccccch
Confidence 4555555555555555533 1111 00 0012223333344455555555555555542 222 3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+..+...+...++.+.|...+...... .|+ ...+..+...+...++++++...+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555555555555555432 333 223333333333444455555544443
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.55 E-value=0.4 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=17.7
Q ss_pred CCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 687 VRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 687 ~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
..|+ ...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3565 567777777777777777775
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.14 E-value=27 Score=34.01 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=73.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCC
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--------GIR 652 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~ 652 (781)
+.|+.+.|...+.+........++.....|... .|+.=...+.+..++++|..++++..+- ...
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~--------~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARV--------CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence 345555555555555443222222223333333 2555555554444888887777765442 233
Q ss_pred CCH-----HHHHHHHHHhcccCc---HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 653 PTK-----SSVISLLSACSHSGL---VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 653 p~~-----~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|+. .++..++.++...+. .++|.++++.+..+++-+| ..+..-++.+.+.++.+++.+.+.+|
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHH
Confidence 443 367777888877664 4567777777766644333 44545566666688888888888887
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.84 E-value=1 Score=30.21 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+.-++.+.|++++|.+..+.+++.+|++..+..+...+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 45567899999999999999999999998876655443
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=1.4 Score=41.71 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=68.1
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhc-CCCcc-----hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETC-NKDVV-----TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST 74 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 74 (781)
+|...++.+...++..-....+++++...+-++. +|+.. +-.+.++-|.+ -+++.++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 4566666777777777766777777777776643 33221 11223333333 36677888877777788888888
Q ss_pred hHHHHHHHHhccCcccchhHHHHHHHHhc
Q 035828 75 TLLIIVSALTQMNCLKQGRVVHCLSIKAG 103 (781)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 103 (781)
+++.+|..+.+.+++.+|.++.-+|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877777776654
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.53 E-value=30 Score=33.86 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHhhc----C--CCCCHhHHHHHHHHhccc--CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 555 RALELFRHL----E--FEPNEISIVSILSACTQL--GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 555 ~A~~~~~~~----~--~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
+|.++|+.| . -.|+...+.+++..-... .-.+.++.+++.+.+.|+..+-.. -+.+-
T Consensus 121 ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~L---------------Q~LS~ 185 (297)
T PF13170_consen 121 RAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDL---------------QFLSH 185 (297)
T ss_pred HHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHH---------------HHHHH
Confidence 445555555 1 345566666666552211 113566777777877777765432 11222
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035828 627 ISAYGYHG---KGWEAIELFHEMCNSGIRPTKSSVISLL 662 (781)
Q Consensus 627 i~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 662 (781)
|-++.... ....+.++++.+.+.|+++....|..+.
T Consensus 186 iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 186 ILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 22222111 1456778888888888887766655443
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.50 E-value=0.76 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
-.+..++.+.|+.++|.+.++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345566777888888888888888888864
No 299
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.29 E-value=15 Score=30.15 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL--EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 601 (781)
.....+..+..+|+-+.-.+++.++ .-+|+...+..+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455677788899988888888887 36788888888999999999999999999998888864
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.17 E-value=19 Score=31.33 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHh
Q 035828 94 VVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTF 131 (781)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (781)
++++.+.+.+++|+...+..+|..+.+.|.+.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445556667777777777777777776655544444
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.81 E-value=3.9 Score=36.07 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=49.9
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCc
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDT 739 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 739 (781)
+.+.|++++|..-|...++...-.|. ...|..-..++.+.+.++.|++--.+. .+.|+ ...+..-..+|-+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666666666544111111 234555555566666666666554443 33332 11222223345556667
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 035828 740 KMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~ 759 (781)
+.|+.-|.++.+++|....+
T Consensus 185 eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHHHhCcchHHH
Confidence 77777777777777665443
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.71 E-value=1.4 Score=26.05 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.69 E-value=4.5 Score=33.96 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHhc---ccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhCCC-CCCcchH
Q 035828 652 RPTKSSVISLLSACS---HSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNLPI-QPKPGVW 726 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~ 726 (781)
+.+....+.|+.... ..++.+++..+++.|. -+.|+. ..-..-...+...|+|++|+.+|++..- .+....-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~ 80 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG 80 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence 334455666665443 4789999999999986 457773 3333345567899999999999999943 3344555
Q ss_pred HHHHHHHHh-cCC
Q 035828 727 GAMLSACSH-HGD 738 (781)
Q Consensus 727 ~~l~~~~~~-~g~ 738 (781)
..|...|.. .||
T Consensus 81 kAL~A~CL~al~D 93 (153)
T TIGR02561 81 KALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHhcCC
Confidence 566555655 344
No 304
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.35 E-value=14 Score=39.74 Aligned_cols=98 Identities=23% Similarity=0.378 Sum_probs=50.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCCh
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKS---SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 707 (781)
...+..+.|+++|.+.-+ +.|+.. .+..|+.+-.. .++...++ +.+ |+ .|-..+.+.|.+
T Consensus 298 tDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El-q~I----gm--------kLn~LlgrKG~l 360 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL-QQI----GM--------KLNSLLGRKGAL 360 (1226)
T ss_pred cchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH-HHH----HH--------HHHHHhhccchH
Confidence 344556777777777766 666554 34444433221 11221111 111 11 133345667766
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
++-.++.+-. .+..+-.-++|+.+|.+..+.|+++.|+
T Consensus 361 eklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 361 EKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 6655544321 1223334567777888888888887766
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.20 E-value=1.4 Score=38.60 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=66.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCc-----chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-P-IQPKP-----GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
..-+.+.|++++|..-+..+ . +++.. ..|..-..+..+.+..+.|+.-..++++++|....++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34567889999998887765 2 33322 23444455667899999999999999999999999999999999999
Q ss_pred CChhhHHhhcC
Q 035828 771 GRWKDAVEIGK 781 (781)
Q Consensus 771 g~~~~A~~l~~ 781 (781)
.++++|++=||
T Consensus 182 ek~eealeDyK 192 (271)
T KOG4234|consen 182 EKYEEALEDYK 192 (271)
T ss_pred hhHHHHHHHHH
Confidence 99999987553
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.11 E-value=27 Score=35.43 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=28.8
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhCCC-C--C---CcchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNLPI-Q--P---KPGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.++..++...-+.|+++-|...+.++.. . + .+...-..+..+...|+.++|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555554421 1 0 222222333344455555555555555554
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.09 E-value=29 Score=32.34 Aligned_cols=279 Identities=13% Similarity=0.076 Sum_probs=147.9
Q ss_pred CCCChhhHHHHHHHh-cCccchHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHhhhcC-------CC
Q 035828 467 ASPDSVTLVNVISAC-GNLELAFEGKSLHGLALKSLMG---LDTRVQNALITMYGRCRDIKSASTVFESCY-------NC 535 (781)
Q Consensus 467 ~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~ 535 (781)
..||...-+..-.+- .+..++++|..-|....+..-. ........++..+.+.|++++..+.+..+. .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 567765544433331 2344677787777776653222 223344566778888888888877776654 12
Q ss_pred C--hhhHHHHHHHHHhCCChhHHHHHHhhc-----CCCCC---HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCC---
Q 035828 536 N--LCTWNCMISAFSQNKAEVRALELFRHL-----EFEPN---EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE--- 602 (781)
Q Consensus 536 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 602 (781)
| ..+.|.++.....+.+.+--.++|+.. +.+-+ ..|-+-|-..+...+.+..-..+++.+.......
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 2 235666666655555555444444332 11111 1122334445555666666666666665432221
Q ss_pred -CchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHh-----cccCcHHHHH
Q 035828 603 -NSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSAC-----SHSGLVDEGL 675 (781)
Q Consensus 603 -~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~~~~~~a~ 675 (781)
+..--..|++ .|..-|..|...++-.+-..++++...- .-.|.+.... .|+-| .+.|++++|.
T Consensus 182 dD~kKGtQLLE---------iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 182 DDQKKGTQLLE---------IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhccchhhh---------hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 1111122333 3555677777777777777778776642 2345554443 44544 3568888887
Q ss_pred HHHHHhHHHcCCCCCc-----chHHHHHHHhhhcC----ChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHH
Q 035828 676 QYYNNMLEEYDVRPET-----EHHVCIVDMLGRSG----KLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 676 ~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 746 (781)
.-|-+..+.+.-.-++ --|..|+.++.++| +-.+|. -.+..|.......++.+|.. ++..+-++++
T Consensus 252 TDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 252 TDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred hHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 6666655544332221 24566777777776 112221 11345666677888887754 4444444444
Q ss_pred HHHhccCCCCCchH
Q 035828 747 ELLFKLEPENVGYY 760 (781)
Q Consensus 747 ~~~~~~~p~~~~~~ 760 (781)
..-...--+||.+-
T Consensus 327 ~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 327 KSNRSNIMDDPFIR 340 (440)
T ss_pred HhhhccccccHHHH
Confidence 43333334455543
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.96 E-value=43 Score=34.16 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=51.9
Q ss_pred cCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhcCCh-H------HHHHHHHhCCC--CCCcchHHHHHHHHH
Q 035828 668 SGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRSGKL-Q------EAYEFIKNLPI--QPKPGVWGAMLSACS 734 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~-~------~A~~~~~~~~~--~p~~~~~~~l~~~~~ 734 (781)
.|+.++|+.++-.+. .+.|+. .-|..+++.+.+..+- . +-++.-+++-. ..+.....-..-...
T Consensus 711 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (831)
T PRK15180 711 EGRLDEALSVLISLK---RIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAM 787 (831)
T ss_pred cccHHHHHHHHHhhh---ccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHh
Confidence 578899999887774 568883 4566777777543311 1 11122222211 122222222222234
Q ss_pred hcCCcHHHHHHHHHHhccC-CCCCch
Q 035828 735 HHGDTKMGKQVAELLFKLE-PENVGY 759 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~-p~~~~~ 759 (781)
+..|+.+|.++|+++.+.+ |..|.+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPVT 813 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchH
Confidence 5679999999999999887 665543
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.87 E-value=62 Score=35.89 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
...-+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444456677777777776664422 223333444555655567777777777765
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=4.3 Score=38.53 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=75.4
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcc-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh
Q 035828 397 LGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTS-----CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471 (781)
Q Consensus 397 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 471 (781)
.|...+..+...++..-....+++++...+-.++..|+.. +-.+.++.+ -.-++++++.++..=.+-| +-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYG-iF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYG-IFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhc-cccch
Confidence 3555566666666666667788888888888776554321 222333333 3446789999998888888 99999
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhc
Q 035828 472 VTLVNVISACGNLELAFEGKSLHGLALKSL 501 (781)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (781)
++++.+|+.+.+.+++..|.++...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776543
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.13 E-value=1.3 Score=42.33 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=77.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
-.+-|.++|.+++|..+|.... .+.| ++.++..-..+|.+.+++..|..=-..+ .+.. -...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999876 4577 6788888889999999888776544433 1111 1224555555555679
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
...+|.+-++.++++.|++. .|-..|.+-....|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 99999999999999999955 444555554444443
No 312
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.89 E-value=32 Score=33.80 Aligned_cols=163 Identities=16% Similarity=0.105 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcC-CCC-------hhhHHHHHHHHHhCCChhHHHHHHhhc-C-----CCC--CHhHH
Q 035828 509 QNALITMYGRCRDIKSASTVFESCY-NCN-------LCTWNCMISAFSQNKAEVRALELFRHL-E-----FEP--NEISI 572 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-----~~p--~~~~~ 572 (781)
|..+.+++.+.-++.+++.+-+-.. -|+ ....-++..++...+.++++++.|+.. . -.| .-..+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 3344445555555555555443221 111 123334556666677788888888776 1 112 23466
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHH----hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 573 VSILSACTQLGVLRHGKQIHGHVFH----LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 573 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
..|-+.+....|+++|.-+.....+ .++..-..-|..+. .--|..++-..|+...|.+.-++..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~-----------lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS-----------LYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH-----------HHHHHHHHHHhcccccHHHHHHHHHH
Confidence 7777777888888888766554433 23322222233222 12245566777888778777766543
Q ss_pred ----CCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 649 ----SGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 649 ----~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
.|-+|- ......+...|...|+.|.|..-|++..
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 343332 2345566677778888888888887753
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.54 E-value=6.7 Score=37.41 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 696 (781)
++..++..+...|+++.+.+.++++.. ..| +...|..++.+|.+.|+...|...|+.+.+ ..|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567788888888999999999999988 444 778899999999999999999999888755 3466666554443
Q ss_pred HHH
Q 035828 697 IVD 699 (781)
Q Consensus 697 l~~ 699 (781)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 314
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.83 E-value=33 Score=33.56 Aligned_cols=127 Identities=7% Similarity=0.003 Sum_probs=77.3
Q ss_pred chhhhHHHHHHHHHhcCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhhcCC------CCcccHHHHHHHHHhCCC
Q 035828 383 SLEFGKSIHCWQLKLGFSNNTIGVNALMHMYIN--CG----DLVAAFSLLQRISHN------SDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~------~~~~~~~~li~~~~~~~~ 450 (781)
.++....+++.+.+.|+.-+..+|-+....... .. ....|.++++.|+.+ ++...+..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 355667788889999999888777654333332 22 356688888888654 244445555443 2233
Q ss_pred ----hHHHHHHHHHHHHcCCCCCC-h-hhHHHHHHHhcCccc--hHHHHHHHHHHHHhcCCCChHHHHHH
Q 035828 451 ----FQEAIKTFKSMTQQQNASPD-S-VTLVNVISACGNLEL--AFEGKSLHGLALKSLMGLDTRVQNAL 512 (781)
Q Consensus 451 ----~~~A~~~~~~m~~~~~~~p~-~-~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 512 (781)
.+.+..+|+.+.+.| +..+ . ....-++..+..... +..+..+++.+.+.|+++....|..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 456677788888777 4443 3 233333333332222 34677788888888888776665443
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.72 E-value=4.3 Score=36.11 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhCC---CCCCcchHH---
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNLP---IQPKPGVWG--- 727 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~--- 727 (781)
..+..+..-|.+.||.++|.+.+.++.+. ...|. ...+..+++.....|++..+...+.++. ..+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 37888889999999999999999998765 55665 4678889999999999999998887772 122111111
Q ss_pred HHHHH--HHhcCCcHHHHHHHHHHhcc
Q 035828 728 AMLSA--CSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 728 ~l~~~--~~~~g~~~~A~~~~~~~~~~ 752 (781)
....+ +...|++..|-+.+-....-
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 11122 34578999988887776543
No 316
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.70 E-value=1.6 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.7
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
...+.++|+..|+..++...-.|+ -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888887776433344 25777788888888888877765
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.07 E-value=10 Score=29.38 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
+..+-+..+-...+.|++....+.++||.+..|+..|..+++.+..+. .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 455666666777799999999999999999999999999999987663 333447777764
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.99 E-value=2.3 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+..+...+...|+++.|...++++.+..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455566666777777777777777776664
No 319
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=82.65 E-value=18 Score=36.99 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHhCCCCCCcc--hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 714 IKNLPIQPKPG--VWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 714 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|...+++|... +++.-+..+.|.+++..|..+.++++++.|...
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 44446666533 567777778899999999999999999998754
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.41 E-value=47 Score=31.69 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH-------HHc------------------CCCCC
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNML-------EEY------------------DVRPE 690 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~------------------~~~p~ 690 (781)
..+|+++|.-+..+. -...+-..++.++....+..+|...+.... ... +...|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 467888888887742 233455566777777777777766655432 211 11223
Q ss_pred cchHHHHHHHhh-hcCChHHHHHHHHhCC--CCCC-----------------cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 691 TEHHVCIVDMLG-RSGKLQEAYEFIKNLP--IQPK-----------------PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 691 ~~~~~~l~~~~~-~~g~~~~A~~~~~~~~--~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
..-|...++..- ..-.++++.+++...+ .-|+ ...+......|..+|.+.+|.++-++++
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 334444444442 2345777777776551 1111 1123344556778999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 751 KLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 751 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.++|-+.+.+..|...|...|+.-+|.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999999999666554
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.20 E-value=1.9 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
+++.+...+...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.18 E-value=88 Score=34.72 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHh--cccchhhhhhHHHHHHHhcC---------CCChHHHHHHHH
Q 035828 255 NGKFEEAFDLLHEMQLMRS--VEPDIATVVTLISLCA--DSLLLREGRSVHGYAIRRLL---------GYDLLMMNSLMD 321 (781)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~--~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~ 321 (781)
.+++..|++.++.+..... ..|-...+..++.++. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 3788889998888876432 2344445555555544 45556667777766644322 234556666655
Q ss_pred HH--HhcCCHHHHHHHHHhhCC
Q 035828 322 FY--SKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 322 ~~--~~~~~~~~a~~~~~~~~~ 341 (781)
.+ ...|++..+...++.+..
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 44 457887788777766644
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.06 E-value=3 Score=24.51 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555666666666666666554
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.80 E-value=8.3 Score=29.51 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCeeeHHHHHHHHHHHHHHhc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPM--NDLVSWNSMISGLFKEMLYLC 363 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~ 363 (781)
++++-+..+....+-|++.+..+.+++|.+.+|+..|.++|+.++.+ .....|..+++.+-..+...|
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELG 94 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELG 94 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHC
Confidence 44455555555666777777777777777777777777777766531 122345555554444433333
No 325
>PRK10941 hypothetical protein; Provisional
Probab=81.45 E-value=3.9 Score=39.06 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=51.5
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
....++-.+|.+.++++.|+...+.+ ...|+ +.-+.--+-.+.+.|.+..|..-++..++..|++|.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556666777888888888877766 44454 33455555567777888888888888888888877766554444
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.18 E-value=4.9 Score=38.62 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
+.|.+.|++++|++.|..-.. +.| |.+++..-..+|.+.+.+..|..-.+..+.- .-. ...|+.-..+-...|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHHh
Confidence 458999999999999998877 677 8899999999999999988887777665422 110 223333333333344
Q ss_pred ChHHHHHHHHhC-CCCCCcchHHH
Q 035828 706 KLQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
+..+|.+=.+.. .+.|+...+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 455554444333 46777544433
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.16 E-value=6.2 Score=30.50 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhcc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCS 364 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~ 364 (781)
+.++-+..+....+-|++.+..+.+.+|.+.+|+..|.++|+.++. ......|.-+++.+-..+...|+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPtl~ELGI 98 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPTLEELGI 98 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhHHHHhCC
Confidence 3444455555556677777777777777777777777777777654 11122566666655544444444
No 328
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.01 E-value=49 Score=31.03 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL----PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
+.+.|.+.|.+.-|..-++++ ...+ ....+-.+..++.+.|-.++|.....-+-...|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445556666666555555444 1111 112344445555666666666665554444445544
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.94 E-value=6.6 Score=40.78 Aligned_cols=129 Identities=13% Similarity=0.024 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
.+-+-.++..|..- +-|-..+.|...--+...|+...|...+.... ...|. ......|.+.+.+.|-..+|-.+
T Consensus 589 ~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~ 664 (886)
T KOG4507|consen 589 EEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKL 664 (886)
T ss_pred HHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHH
Confidence 34455566666532 33433344433223345899999999998876 45664 35677889999999988899887
Q ss_pred HHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 714 IKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 714 ~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
+.+. . ....+.+.-.+.+++....+.++|++.++.+.++.|+++..-..|-.+-+
T Consensus 665 l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 665 LLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 7654 3 23445577788888889999999999999999999999998887766654
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.83 E-value=11 Score=33.68 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCCcchHHHHHHHhhhcCChHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPETEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 711 (781)
.-++|.+.|-++...+.--++.....|..-|. ..|.+++.+++.+.++-..- .+++..+.+|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34678888888887765556555555554444 56888888888888765322 356788888888888888888774
No 331
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.60 E-value=47 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=15.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
+..+++.+|+++|++.-...+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34567788888888876654433
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.32 E-value=2.2 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCChh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 774 (781)
|....-.+...+...|+++.|.+.+-++++.+|+ +..+-..|..++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456667777788899999999999999988754 4667777777777777643
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.33 E-value=42 Score=29.22 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=34.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
...|-+++.....+.+-..|-+.-...-..|.-+-.+.|++..|.++|+.+..+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 455666666666666655544444445566666666777777777777777554
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.20 E-value=3.3 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=9.7
Q ss_pred HHHHHhhhcCChHHHHHHH
Q 035828 696 CIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~ 714 (781)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555444
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.87 E-value=15 Score=28.26 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
+.-++.+-++.+....+.|++....+.++||.+.+|+..|..+++.+..+.+ .....|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445566666666677899999999999999999999999999998865423 23445665543
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.66 E-value=88 Score=32.56 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
..-+++..+..+-...-...+..+| ...-+...|..++.+|... ..+.-..+|+++.+..+....
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv------------- 133 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV------------- 133 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH-------------
Confidence 3444555555555555555555665 5556666666666666555 444555566655555443222
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CH---HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP---TK---SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET 691 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 691 (781)
.-..|...|.+ ++.+.+..+|.+.... +.| +. ..|..|..-- ..+.+..+.+..++....|..--.
T Consensus 134 ----~~ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~ 205 (711)
T COG1747 134 ----IGRELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGS 205 (711)
T ss_pred ----HHHHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHH
Confidence 12233333333 6666666666666543 222 11 1344433211 235566666666665554444444
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+..+-.-|....++++|++++...
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHH
Confidence 45555556666666777777776654
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.49 E-value=1.2e+02 Score=33.82 Aligned_cols=192 Identities=13% Similarity=0.016 Sum_probs=92.8
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHH--------HHHhCCC
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFH--------EMCNSGI 651 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~g~ 651 (781)
.-.+++..|....+.+.+..-+.....+..+ .+..+....-.+...|+.+.|...|. .....+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--------~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESL--------YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhh--------hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 3457888898888888764322111000000 00011112222346799999999997 4555555
Q ss_pred CCCHHHHHHHH--HHhc--ccCcHHH--HHHHHHHhHHHcCCCCCc--c-hHHHHHHHhhhcC--ChHHHHHHHH-----
Q 035828 652 RPTKSSVISLL--SACS--HSGLVDE--GLQYYNNMLEEYDVRPET--E-HHVCIVDMLGRSG--KLQEAYEFIK----- 715 (781)
Q Consensus 652 ~p~~~~~~~l~--~~~~--~~~~~~~--a~~~~~~~~~~~~~~p~~--~-~~~~l~~~~~~~g--~~~~A~~~~~----- 715 (781)
.++..++..|= -.+. ...+.++ ..++++.+.......|+. . .+..++.++.... ...++...+.
T Consensus 444 ~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~ 523 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKM 523 (608)
T ss_pred chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Confidence 55554443321 1122 2223333 777777664332333332 2 2333333332211 2234433332
Q ss_pred ---hCCCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccC---CCCCch-HH-----HHHHHHHhcCChhhHHhhc
Q 035828 716 ---NLPIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLE---PENVGY-YI-----SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 716 ---~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~-~~-----~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+..--.. .++-+...+. .|+..+.......+.... |+.... |. .+...|...|+.++|.++.
T Consensus 524 ~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 524 ANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 222111111 2333333333 688888777776666544 332332 32 3455688899999998753
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.38 E-value=53 Score=30.75 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh---CCCC--CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC----CCCCcchH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCN---SGIR--PTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYD----VRPETEHH 694 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~---~g~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~ 694 (781)
-.+|..+.+.+++++.++.+.+|.. +.+. -+..+.+.++.-.+...+.+.-.++++.-++... -+....+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455556667777777777777653 1111 1334566666666666666655555555443321 12223455
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC--CCC---------C---cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNLP--IQP---------K---PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p---------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
.-|...|...|.+.+-.++++++. ++. . ..+|..-++.|....+-.+-..+|++++....--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 667888888888888888777661 111 1 12344456666777888888888888887653333222
Q ss_pred H--HH----HHHHHhcCChhhHH
Q 035828 761 I--SL----SNMYVALGRWKDAV 777 (781)
Q Consensus 761 ~--~l----~~~~~~~g~~~~A~ 777 (781)
. .. |....+.|+|++|-
T Consensus 229 ImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhHHHHcCCccccccchHHHHH
Confidence 2 11 23466777777774
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.21 E-value=10 Score=35.59 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=21.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+.+-..+.+++++|+..+.+...+|+..|..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek 39 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEK 39 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhh
Confidence 4555667777888888888777777665543
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.07 E-value=67 Score=30.84 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=51.4
Q ss_pred hcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHH----HhcCCCCChhhHHHHHHHHhccCccc-chh
Q 035828 19 NVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEM----VEEGIRFDSTTLLIIVSALTQMNCLK-QGR 93 (781)
Q Consensus 19 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~ 93 (781)
+.+++++|.+++.+ =...+.+.|+...|-++-..| .+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 56778888887743 122344455544444333332 23455556555555555544333211 223
Q ss_pred HHHHHHHHh---c--CCCCcchhhhHHHHhhccCChhhHHHHhcc
Q 035828 94 VVHCLSIKA---G--MIADSSLCNVFVNMYAKCGDLNSSECTFSG 133 (781)
Q Consensus 94 ~~~~~~~~~---~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 133 (781)
.+.+.+++. + -.-++.....+-..|.+.|++.+|+.-|=.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 333333322 2 223567788888889999999988887643
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.97 E-value=5.1 Score=38.19 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
..++..++..+...|+.+.+.+.++++ ...| +...|..++.++.+.|+...|+..|+++.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 357888999999999999999999887 4555 6778999999999999999999999999875
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.47 E-value=31 Score=28.53 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=40.0
Q ss_pred CCCcchHHHHHHHhhhcCChHHH---HHHHHhC-C-CCCCc--chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 688 RPETEHHVCIVDMLGRSGKLQEA---YEFIKNL-P-IQPKP--GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 688 ~p~~~~~~~l~~~~~~~g~~~~A---~~~~~~~-~-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
.++..+--.+.+++.++.+.++. +.++++. + -+|.. ...--+.-++.+.|+++++.++.+.+++.+|+++++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44445555566666665544433 3444444 1 22221 1222233446667777777777777777777766654
Q ss_pred HH
Q 035828 761 IS 762 (781)
Q Consensus 761 ~~ 762 (781)
.+
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 44
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=22 Score=32.65 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHH
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSS-VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 709 (781)
...+++.|+..|.+... +.|+..+ |..=+-++.+..+++.+.+-....+ .+.|+. ....-+...+.....+++
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccccH
Confidence 34677888887776666 6777644 4444556666777777776666554 557773 445556777777888888
Q ss_pred HHHHHHhC-------CCCCCcchHHHHHHHHHhcCCcHHHHH
Q 035828 710 AYEFIKNL-------PIQPKPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 710 A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
|+..+.+. +++|...++..|..+=.+.=.....++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 88877665 355556667777655333333344444
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.12 E-value=2.2e+02 Score=36.30 Aligned_cols=156 Identities=9% Similarity=-0.012 Sum_probs=82.5
Q ss_pred HHHhccCcccchhHHHHHH----HHhcCCCCcchhhhHHHHhhccCChhhHHHHhcc-CCCCCeeehHHHHHHHhhCCCh
Q 035828 81 SALTQMNCLKQGRVVHCLS----IKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSG-MHCADTVSWNTIMSGCLHNNYP 155 (781)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 155 (781)
.+-.+.+.+..|...++.- ++. ......|-.+...|+.-+++|+...+... ...|+. + .-|......|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhccH
Confidence 3444556666666666652 111 11223444555588888888887777652 333332 2 234445667889
Q ss_pred hhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHhcCChhHHHHHh
Q 035828 156 EKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTN-SLISMYSQCGDIEAAERAF 234 (781)
Q Consensus 156 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~ 234 (781)
..|...|+.+.+.+ ++...++.-+++..-..+.++......+....... +....++ .=+.+--+.+++|......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s---e~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS---EEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccC---HHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999987654 22255677666666666666665554333332221 1122222 2233333455555554444
Q ss_pred ccCCCCCcccHHHH
Q 035828 235 WGMTCKDVVSWNAI 248 (781)
Q Consensus 235 ~~~~~~~~~~~~~l 248 (781)
. ..+..+|.+.
T Consensus 1542 ~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVE 1552 (2382)
T ss_pred h---cccccchhHH
Confidence 3 3344455444
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.78 E-value=9.9 Score=29.27 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=54.3
Q ss_pred cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhh
Q 035828 88 CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGW 167 (781)
Q Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 167 (781)
..++|..+-+.+...+-. ...+--..+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456666666666554411 222223334557788999999999999999999999877664 56666777777777776
Q ss_pred cC
Q 035828 168 SG 169 (781)
Q Consensus 168 ~g 169 (781)
+|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 65
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.24 E-value=5.5 Score=36.32 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=62.3
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHH-hCCCCCCcchHHHHHH-HHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIK-NLPIQPKPGVWGAMLS-ACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~-~~~~~g~~~ 740 (781)
-|...++++.|...|.+.+ .+.|.. ..|..=+-++.+.++++.+..=-. ...+.|+..---.+.. .......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 5667778899999888776 568886 666777788888888888765433 3467777665444444 445678899
Q ss_pred HHHHHHHHHhcc
Q 035828 741 MGKQVAELLFKL 752 (781)
Q Consensus 741 ~A~~~~~~~~~~ 752 (781)
.|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999998655
No 347
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.08 E-value=1.4e+02 Score=33.53 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=50.0
Q ss_pred HHHhCCCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 713 FIKNLPIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 713 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+|...+++|- ..+...-+..+.+.+++..|..+..+++++.|..+.+...---.-....+..+|.+|
T Consensus 1072 YFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l 1140 (1202)
T KOG0292|consen 1072 YFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYEL 1140 (1202)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCccccccc
Confidence 4666777774 345677888899999999999999999999998777766555455555666666544
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.94 E-value=35 Score=31.88 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=65.9
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHH
Q 035828 623 WSSMISAY--GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVD 699 (781)
Q Consensus 623 ~~~li~~~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 699 (781)
|...+.++ ..++++++|++++-.- .+.|+... -++.++...|+.+.|+.+++.+ +-.++. .....++.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~----~p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAV----GPPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhc----CCCCCCHHHHHHHHH
Confidence 44455554 4567888888887333 23344322 3666777789999999999875 222222 22333333
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHG 737 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 737 (781)
. ..++...||..+.+.....-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 3 677899999998888743333457777777776544
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.93 E-value=1.1e+02 Score=32.04 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 634 GKGWEAIELFHEMCNS-GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
.+.+..+.+....+.. |..--.+.+.-+-.-|....++++|.+++..+++. -.-+...-..++.-+
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 5666777777777653 33334455666667788899999999999998764 233444444555443
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.88 E-value=1.5e+02 Score=33.85 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=36.0
Q ss_pred cCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 035828 365 QFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNS 433 (781)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (781)
.-|......+++.-.....++..+..+.. ..-|..|+..|...|+.++|++++......+
T Consensus 475 ~~n~~~v~~llrlen~~c~vee~e~~L~k---------~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 475 ETNPGLVGPLLRLENNHCDVEEIETVLKK---------SKKYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred hcCchhhhhhhhccCCCcchHHHHHHHHh---------cccHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 33444455555444333444444444322 2346778888888888888888888875544
No 351
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=11 Score=34.63 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHc-----CCCCCc-----------chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-Cc
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEY-----DVRPET-----------EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KP 723 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 723 (781)
.+-+.+.|++++|...|.+.+-.. .-+|.. ..+.+..+++...|++-++++--.+. ...| ++
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 346677788888888887764321 223432 22333445555666666665554443 2233 33
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
..|-.=..+....=+..+|..-+.++++++|.-...
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 344333334444446666666777777776664443
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.65 E-value=1.3e+02 Score=33.14 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCCh
Q 035828 510 NALITMYGRCRDIKSASTVFESCYNCNL 537 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~~~~~ 537 (781)
..|+..|...+++.+|...+-.....++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccChHH
Confidence 4478888888999999888877776654
No 353
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=74.77 E-value=6.3 Score=37.28 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=25.9
Q ss_pred hcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 703 RSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+.|+.++|..+|+.+ ...|+ +..+..+.......++.-+|.+.|-+++..+|.+..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 444555555554433 33332 223333333333344455555555555555555444443
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.31 E-value=39 Score=26.24 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVT 283 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ 283 (781)
+--.-+..+.+.|++++|..+.+.+..||...|-+|-.. +.|-.++...-+.+|..+| .|...+|..
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg--~p~lq~Faa 107 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG--DPRLQTFVA 107 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 333344556678999999999999888888888777654 6677777777777777765 555555543
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.17 E-value=1.5 Score=42.07 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=57.7
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKM 741 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 741 (781)
....|.+++|++.+...++ ..|. ...|..-.+++.+.+++..|++=++.. .+.||.. .|..=..+.+..|+.++
T Consensus 124 Aln~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 3456778888888877763 3554 466777777777888888777666544 4555533 33333344556788888
Q ss_pred HHHHHHHHhccCCC
Q 035828 742 GKQVAELLFKLEPE 755 (781)
Q Consensus 742 A~~~~~~~~~~~p~ 755 (781)
|...++.+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 88888888877743
No 356
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.76 E-value=5.5 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355555566666666666666666554
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.45 E-value=7.3 Score=24.17 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
+++.+...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666543
No 358
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.89 E-value=29 Score=35.51 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhc--ccCcHHHHHHHHHHhHHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKS--SVISLLSACS--HSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 684 (781)
+-+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34789999999999999987 666554 4555556654 366889999999987654
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.10 E-value=6.5 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
|+.+.|..+++++++..|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888776654
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.61 E-value=63 Score=29.43 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 696 (781)
+.+.-++.+.+.+..++|+...++-.+. +| |..+-..++.-++..|+|++|..-++-.- .+.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3455567788889999999998877763 45 55677888899999999999999888764 34665 456666
Q ss_pred HHHHhhhcCChHHHH-HHHHhCCCCCC-----cchHHHHHHH-H-Hhc-CCcHHHHHHHHHHhccCCCCCc
Q 035828 697 IVDMLGRSGKLQEAY-EFIKNLPIQPK-----PGVWGAMLSA-C-SHH-GDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 697 l~~~~~~~g~~~~A~-~~~~~~~~~p~-----~~~~~~l~~~-~-~~~-g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
++++ +.+. ++|. -+..|. ...|...+.+ . ++. |.-+.+..+-+.+++..|..+.
T Consensus 78 lir~-------ea~R~evfa-g~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 78 LIRC-------EAARNEVFA-GGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHHhc-cCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 6654 2222 2332 222232 2344444333 2 233 4555566777777777776443
No 361
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.60 E-value=1.7e+02 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccc
Q 035828 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSL 292 (781)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~ 292 (781)
...| ++|-.|.|.|++++|.++..+.... .......|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCC
Confidence 3344 5777889999999999999776654 5666677888888877643
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.54 E-value=1e+02 Score=29.92 Aligned_cols=105 Identities=11% Similarity=0.208 Sum_probs=57.7
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC---CCCCCcc-hHH-HHHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL---PIQPKPG-VWG-AMLSA 732 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~-~~~-~l~~~ 732 (781)
-..|..+-.+.|+..+|.+.++++.++..+..-..+..+|+.++.+..-|.+...++-+. ..+.+.. .|. +++.+
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~ 357 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKT 357 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 344444555678888888888887665221111355667777777777777766665444 2222221 121 11111
Q ss_pred H-----------HhcC---CcHHHHHHHHHHhccCCCCCchHHH
Q 035828 733 C-----------SHHG---DTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 733 ~-----------~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
- .+.| ---.|.+...++.+-+|.-|.....
T Consensus 358 RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 358 RAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 1 1111 1234667777888888887766543
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.31 E-value=7.9 Score=22.38 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=13.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334445556666666666665554
No 364
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=70.85 E-value=1.5e+02 Score=31.63 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=57.8
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCC--CChHHHHH
Q 035828 241 DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLG--YDLLMMNS 318 (781)
Q Consensus 241 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 318 (781)
+..+|+.-+.-....|+++.+.-+|++..-. +..=...|-..+.-....|+.+.+..++....+--.+ |....+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4567888888888899999999888887532 1111122333333333447777777766665554333 23333333
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCC
Q 035828 319 LMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 319 ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.+. -..|++..|..+++.+..
T Consensus 374 ~f~--e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 374 RFE--ESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHH--HhhccHHHHHHHHHHHHh
Confidence 222 235788888888877755
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.56 E-value=25 Score=35.79 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=82.6
Q ss_pred HhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 631 GYHGKGWEAI-ELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 631 ~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
...|+.-.|- +++..+....-.|+.....+. .+...|+++.+.+.+....+. +.....+...+++....-|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 3456666654 455556654445665544444 345679999999998877533 33345778888999999999999
Q ss_pred HHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 710 AYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 710 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
|...-.-| +. ..+..+...-.......|-++++.-.|++++.++|+...
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 99887766 21 122222322333345667899999999999999965433
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.46 E-value=1.7e+02 Score=33.54 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCC---hhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHH
Q 035828 40 TWNAMITACVENRCVVMGLHFFGEMVEEGIRFD---STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVN 116 (781)
Q Consensus 40 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 116 (781)
.|..|+.-|...|.+++|+.+|.+.....-.-| ..-+..+ .+.+.+.+ .++. .||-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~i----------------i~YL~~l~-~~~~----~Li~ 564 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKI----------------IEYLKKLG-AENL----DLIL 564 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHH----------------HHHHHHhc-ccch----hHHH
Confidence 488899999999999999999998875320001 1112122 22222222 1111 1222
Q ss_pred Hhhc---cCChhhHHHHhccCCC--CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 035828 117 MYAK---CGDLNSSECTFSGMHC--ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASA 185 (781)
Q Consensus 117 ~~~~---~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 185 (781)
.|.. ..+.+...++|..-.. .....-. -+-.|+.....+-+..+++.+....-.++..-.+.++..|+
T Consensus 565 ~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 565 EYADWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2221 2344555555554111 0111111 22335566677788888888877665566655555655554
No 367
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=77 Score=33.71 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHH
Q 035828 413 YINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKS 492 (781)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 492 (781)
..+.|+++.|.++..+. .+..-|..|-++..+.+++..|.+.|.+.... ..|+-.+...|+.+....
T Consensus 647 al~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHHHH
Confidence 45667888887776554 35667888999999999999998888876553 344555555565555555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhh
Q 035828 493 LHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
+-....+.|.. |...-+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 55555544432 2333345556666666655543
No 368
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=70.17 E-value=1.9e+02 Score=32.49 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=22.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHh
Q 035828 443 VACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481 (781)
Q Consensus 443 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 481 (781)
..+.-+|+++.|+.++.+.-. ...|.+++.+.+.-+
T Consensus 476 ~~LlLsgqfe~AI~fL~~~~~---~~~dAVH~AI~l~~l 511 (835)
T KOG2168|consen 476 QVLLLSGQFERAIEFLHREEP---NRIDAVHVAIALAEL 511 (835)
T ss_pred HHHHHHHhHHHHHHHHHhhcC---CcchhHHHHHHHHHh
Confidence 344456788888888776644 235666666555443
No 369
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.04 E-value=68 Score=27.24 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC---------CCCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCCHHHHH
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMT---------CKDVVSWNAIIDGFALNGK-FEEAFDLLHEMQLMRSVEPDIATVV 282 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~pd~~t~~ 282 (781)
..|.++.-....+++.....+++.+. ..+-..|+.++.+..+... --.+..+|.-|++.+ .+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~-~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND-IEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 34444444444455555444444442 1244456666666644444 334555666666544 566666666
Q ss_pred HHHHHHhcc
Q 035828 283 TLISLCADS 291 (781)
Q Consensus 283 ~ll~~~~~~ 291 (781)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 666665443
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.96 E-value=41 Score=28.48 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHhcccc-hhhhhhHHHHHHHhcCCCChHHHHH
Q 035828 244 SWNAIIDGFALNGKFEEAFDLLHEMQLMRS----VEPDIATVVTLISLCADSLL-LREGRSVHGYAIRRLLGYDLLMMNS 318 (781)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 318 (781)
..|.++......+++...+.+++.+..-.. -..|..+|.+++.+.++... --.+..++..+++.+.+++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 478888888888999999999988854110 02345679999999987776 5567889999999899999999999
Q ss_pred HHHHHHhcCC
Q 035828 319 LMDFYSKSNS 328 (781)
Q Consensus 319 ll~~~~~~~~ 328 (781)
+|.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9999876533
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.89 E-value=5.2 Score=29.27 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.6
Q ss_pred HhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH---HHhcCChhhHHh
Q 035828 734 SHHGDTKMGKQVAELLFKLEPENVGYYISLSNM---YVALGRWKDAVE 778 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~ 778 (781)
....+.++|+..|+++++..++.+..+..||.+ |..-|+++++++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888887777777766654 566677666654
No 372
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=72 Score=33.89 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=60.3
Q ss_pred hcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcccchhhhhhHH
Q 035828 223 QCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIA-TVVTLISLCADSLLLREGRSVH 301 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~ 301 (781)
-.|+++.|..++..++++ .-+.+..-+-+.|-.++|+++ .+|.. -| ....+.|+++.|.++.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~----------s~D~d~rF----elal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL----------STDPDQRF----ELALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc----------CCChhhhh----hhhhhcCcHHHHHHHH
Confidence 357777777777666633 233445555566666666654 22222 22 2233567777777665
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 302 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.+.. +..-|..|-++....+++..|.+.|.....
T Consensus 661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 5432 556688888888888999888888877765
No 373
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.46 E-value=1.9e+02 Score=32.12 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 317 NSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 317 ~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
..|...|...++++.|..++-...+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3478888899999999998877755
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.45 E-value=1e+02 Score=30.28 Aligned_cols=133 Identities=9% Similarity=-0.047 Sum_probs=84.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc---
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS--- 704 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 704 (781)
...+..+|.++|..+-+.|..+-... |...+.. ..|..+|..++++..+. |..+.......+...|..-
T Consensus 89 v~~~~~~A~~~~~~~a~~g~~~a~~~---lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 89 VSRDKTKAADWYRCAAADGLAEALFN---LGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQA 164 (292)
T ss_pred ccccHHHHHHHHHHHhhcccHHHHHh---HHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhh
Confidence 34568889999998877765443333 3333322 44899999999998765 5554323344455555443
Q ss_pred --C--ChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 705 --G--KLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 705 --g--~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
- +...|...+.++-..-+......+...+.. ..|.++|..++.++-+.+. +.....++ .+...|
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 1 233688888776322233444444444432 3488999999999999888 77778888 666555
No 375
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.16 E-value=1.7e+02 Score=32.17 Aligned_cols=26 Identities=8% Similarity=-0.030 Sum_probs=15.0
Q ss_pred CCccchhHHHHHhhcCCchhHHHHhhh
Q 035828 6 HLPTSTSLLTAYSNVSYFESSLALFYE 32 (781)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 32 (781)
|+..|+ .+..+.-+|.++.|.+++..
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 345555 56666666777777777643
No 376
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=68.85 E-value=93 Score=28.36 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEPN 568 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 568 (781)
.+||-+.--+...|+++.|.+.|+.. ++.|.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 46666666666677777777777666 55553
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.33 E-value=1.3e+02 Score=31.47 Aligned_cols=209 Identities=8% Similarity=-0.083 Sum_probs=108.0
Q ss_pred HHHhhcCCchhHHHHhhhhcCCCcch--hhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh--hHHHHHHHHhccCccc
Q 035828 15 TAYSNVSYFESSLALFYETCNKDVVT--WNAMITACVENRCVVMGLHFFGEMVEEGIRFDST--TLLIIVSALTQMNCLK 90 (781)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~ 90 (781)
..-...|+.+-+..+++....++... ..+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 34455688888888887765554432 445566666667654 444555566555432 1123344555667655
Q ss_pred chhHHHHHHHHhcCCCCc---chhhhHHHHhhccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCChhhHHHHHHH
Q 035828 91 QGRVVHCLSIKAGMIADS---SLCNVFVNMYAKCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNYPEKCLLYFRE 164 (781)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 164 (781)
.. +.+.+.|...+. ..-.+.+...+..|+.+-+..+++.-..+ +....+. +...+..|+.+-+..
T Consensus 83 ~v----~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~---- 153 (413)
T PHA02875 83 AV----EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIEL---- 153 (413)
T ss_pred HH----HHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----
Confidence 44 334444432211 11234555566778887777777654333 2222333 444456676654433
Q ss_pred HhhcCCCCCcch--HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 035828 165 MGWSGEQADNVS--LSSAVAASACLGELSYGKVIHALGIKLGYEDSP-YVSVTNSLISMYSQCGDIEAAERAFWGMTCK 240 (781)
Q Consensus 165 m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 240 (781)
+.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++. +.....+++...+..|+.+-+.-+++.=..+
T Consensus 154 Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 344554443221 11233334445665544 444555654431 1112235666566788888777777654433
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.78 E-value=53 Score=31.19 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh---
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNS--GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML--- 701 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 701 (781)
|.+++..+++.+++...-+-.+. .++| .....-|--|.+.+.+..+.++-...++. .-.-+..-|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 77889999999999876665542 2444 34555556788999999999998888765 2222234577777665
Q ss_pred --hhcCChHHHHHHHH
Q 035828 702 --GRSGKLQEAYEFIK 715 (781)
Q Consensus 702 --~~~g~~~~A~~~~~ 715 (781)
.=.|.+++|.+++.
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 45799999998863
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.48 E-value=36 Score=30.89 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=42.4
Q ss_pred hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 035828 142 WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLIS 219 (781)
Q Consensus 142 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~ 219 (781)
.+.-++.+.+.+.+.+++...++-.+.. +.|..+-..+++.++-.|+++.|..-++...+......+....|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444556666677777777666655542 2334445556666666666666665555555544433333445554443
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.44 E-value=19 Score=28.82 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----C-CCCCchHHHHHHHHHhcCC
Q 035828 706 KLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL-----E-PENVGYYISLSNMYVALGR 772 (781)
Q Consensus 706 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-p~~~~~~~~l~~~~~~~g~ 772 (781)
+.++..+.+.+- .-|..++.-|...|..++|.+++.+.... . |........++.-+.+.|+
T Consensus 28 ~~~~~e~~L~~~------~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 28 DLEEVEEVLKEH------GKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHHc------CCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 555666666543 35888999999999999999999998872 1 3333333444554445454
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.02 E-value=1.2e+02 Score=29.12 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=81.3
Q ss_pred cCChhHHHHHhccCCC-----CCcccHHHHHHHHHh-CC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhh
Q 035828 224 CGDIEAAERAFWGMTC-----KDVVSWNAIIDGFAL-NG-KFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLRE 296 (781)
Q Consensus 224 ~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 296 (781)
...+-+|+++|+.... .|...-..+++.... .+ ....-.++.+-+....+-.++..+...+|..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345677777774332 255556666666655 22 2233334444444443367888889999999999999999
Q ss_pred hhhHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 035828 297 GRSVHGYAIRR-LLGYDLLMMNSLMDFYSKSNSLSKAELLFNA 338 (781)
Q Consensus 297 a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 338 (781)
..++++..... +..-|...|..+|+.....||..-..++.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999887766 6777889999999999999999888777764
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.00 E-value=9 Score=34.75 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=38.9
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+..+.++.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.|++.++++|++-.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 344566777777766655 3333 4556666666666778888888888888887766543
No 383
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.38 E-value=99 Score=27.74 Aligned_cols=57 Identities=14% Similarity=-0.029 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 035828 216 SLISMYSQCGDIEAAERAFWGMTCKDVVS--WNAIIDGFALNGKFEEAFDLLHEMQLMR 272 (781)
Q Consensus 216 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 272 (781)
.|-......|.+|.|+..++....++-.. ...-...+...|+-++|..-|..-...+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455566788888888887776553322 2233456777788888888887777654
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.06 E-value=2.3e+02 Score=31.49 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=90.2
Q ss_pred hHHHHhhccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCC-------hhhHHHHHHHHhhcCCCCCcc--hHHHH
Q 035828 113 VFVNMYAKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNY-------PEKCLLYFREMGWSGEQADNV--SLSSA 180 (781)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~--t~~~l 180 (781)
++|--+.|+|++++|.++..+.. +.....+-..+..++...+ -++...-|++........|++ ....+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 45666778999999999883332 2333455666666665422 234455566666554433443 22233
Q ss_pred HHHhhccC-Ch-hHH---H---HHHHHHHHhcCCCC---CchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHH
Q 035828 181 VAASACLG-EL-SYG---K---VIHALGIKLGYEDS---PYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAII 249 (781)
Q Consensus 181 l~~~~~~~-~~-~~a---~---~~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 249 (781)
|..|-... +. +-+ + ++.-.++......+ .+..++..|=+...+-|. ..|.. ..+...| .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~p~~Y---f 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSNPLLY---F 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT--------H---H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chhHHHH---H
Confidence 33332211 11 111 1 11111111111110 012233322222222121 12222 1122333 3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhc-CCCChHHHHHHHHHHHh---
Q 035828 250 DGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRL-LGYDLLMMNSLMDFYSK--- 325 (781)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~--- 325 (781)
..+.-.|+++.|++.+-+.. + ...|...+.+.+.-+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~~~--~-~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRNE--F-NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHhhc--c-CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45567899999999988722 2 5677777777776654322222111 2222111 11112456778888876
Q ss_pred cCCHHHHHHHHHhhCCCCC
Q 035828 326 SNSLSKAELLFNAIAPMND 344 (781)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~ 344 (781)
..+...|.+.|--+....+
T Consensus 340 ~td~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD 358 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 5688889988877766444
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.01 E-value=88 Score=31.78 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCC-CCchHHHHHHHHH
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPE-NVGYYISLSNMYV 768 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 768 (781)
+..+.+.|-+..|.++.+-++.++|. ||-.....++-|.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A 149 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA 149 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 33444566666666666666666665 6665555555544
No 386
>PRK09687 putative lyase; Provisional
Probab=63.91 E-value=1.5e+02 Score=28.90 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
...+.++.+.++ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.+. .||..+-...+.++
T Consensus 210 ~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 210 IEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 334445555555 34555555554432 2 233566677777774 677777777644 45655444444443
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.87 E-value=22 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=18.0
Q ss_pred CCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 686 DVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 686 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
...|++..|..++..+...|+.++|.+++.++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33555555555555555555555555555544
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.74 E-value=4.7 Score=40.94 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=80.2
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHH-HHhCCCCCC-cchHHHHHHHHHhcCC
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEF-IKNLPIQPK-PGVWGAMLSACSHHGD 738 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~-~~~~~~l~~~~~~~g~ 738 (781)
...+...++++.|..++.+++ ...|+. ..|..=..++.+.+++..|+.= .+.+...|. ...|-.=..+|.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 455667789999999999998 458875 4555555888999999999854 444466664 2344444566778899
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhhH
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNM--YVALGRWKDA 776 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A 776 (781)
+.+|...++....+.|+++..-..+... ......++.|
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999876655443 3333344444
No 389
>PRK12798 chemotaxis protein; Reviewed
Probab=60.71 E-value=2e+02 Score=29.40 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=69.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcC-
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSG- 705 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g- 705 (781)
...+..+|+++|+...- .-|-. ....--+-.....|+.+++..+-..-.++|...|=. ..+..+...+.+.+
T Consensus 160 ~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d 237 (421)
T PRK12798 160 VATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDD 237 (421)
T ss_pred cccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccc
Confidence 34556666666666543 23321 122222334455677777777766666665555542 23333333333332
Q ss_pred --ChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 706 --KLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 706 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
..++-.+++..|.-.-....|-.+.+.-...|+.+.|....+++..+..+ ...-...+.+|.
T Consensus 238 ~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~ 301 (421)
T PRK12798 238 EIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYR 301 (421)
T ss_pred cccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHH
Confidence 22333344445432222346666667677777777777777777777622 333333444443
No 390
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.60 E-value=31 Score=27.09 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=50.4
Q ss_pred cCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHH
Q 035828 86 MNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREM 165 (781)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 165 (781)
....++|..+.+.+...+. ....+--..+..+.+.|++++|...=.....||...|-+|-.+ +.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 3456777777777777652 2222222334456788999999666666677888888776553 678788888888888
Q ss_pred hhcC
Q 035828 166 GWSG 169 (781)
Q Consensus 166 ~~~g 169 (781)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 7665
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.40 E-value=19 Score=23.09 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=17.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSG 650 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g 650 (781)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556677777777777777777543
No 392
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.54 E-value=2.2e+02 Score=33.23 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----------------------CCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHH
Q 035828 628 SAYGYHGKGWEAIELFHEMCN-----------------------SGIRPT-----KSSVISLLSACSHSGLVDEGLQYYN 679 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~-----------------------~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 679 (781)
.+|...|+..+|++.|.+... .|-.|. ..-|...++-+-+.+-.|++.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346677888888887776532 232222 2246777888888888888888888
Q ss_pred HhHHHcCCC-CC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcc----hHHHHHHHHHhcCCcHH------------
Q 035828 680 NMLEEYDVR-PE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPG----VWGAMLSACSHHGDTKM------------ 741 (781)
Q Consensus 680 ~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~------------ 741 (781)
.+++..+.. |+ ..+++.+.+-....|.+-+|.+.+-.- ||.. ..+.++-.++.+|..+.
T Consensus 1008 ~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~e 1084 (1480)
T KOG4521|consen 1008 KAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQE 1084 (1480)
T ss_pred HHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHH
Confidence 877653221 23 467888888889999999998877654 4433 46677777777776543
Q ss_pred HHH-HHHHHhccCCCCCchHH-HHHHHHHhcCChhhHHhh
Q 035828 742 GKQ-VAELLFKLEPENVGYYI-SLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 742 A~~-~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~l 779 (781)
.+. +.+.+-+..|-+..-|+ .|=.-+...+||.+|-.+
T Consensus 1085 ve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1085 VEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 344 44455555555444444 444456688999998653
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.90 E-value=18 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.+..+|...||.+.|..+++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 356667777777777777777774
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.87 E-value=71 Score=24.18 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHH
Q 035828 491 KSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRAL 557 (781)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 557 (781)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..++ .++..|..++.++...|...-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3445555555532 33333333333335577888888888888 77778888888887777655443
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.45 E-value=1.1e+02 Score=29.32 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=55.1
Q ss_pred HHHHHhCCChhHHHHHHhhc----C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 544 ISAFSQNKAEVRALELFRHL----E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 544 ~~~~~~~~~~~~A~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
|++++..+++.+++...-+- + +.|... ..-|-.|++.+....+.++-..-.+.--..+..-|.++.+.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy---- 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY---- 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH----
Confidence 55666666666666544443 2 444333 333444677777777777777666544444444477777776
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELF 643 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~ 643 (781)
+.+.+.-.|.+++|.++.
T Consensus 164 -------Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 -------LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -------HHHHHhccccHHHHHHHH
Confidence 566677789999998887
No 396
>PRK10941 hypothetical protein; Provisional
Probab=58.23 E-value=55 Score=31.44 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHH----HhCCCCCCcchHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFI----KNLPIQPKPGVWGAMLS 731 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~p~~~~~~~l~~ 731 (781)
..+.+-.+|.+.++++.|+.+.+.++. +.|+ +.-+-.-.-.|.+.|.+..|..=+ +..+..|++......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 355555666777777777777777763 3555 333444455566777777665432 33445555555555554
Q ss_pred HHH
Q 035828 732 ACS 734 (781)
Q Consensus 732 ~~~ 734 (781)
.+.
T Consensus 260 ~l~ 262 (269)
T PRK10941 260 SIE 262 (269)
T ss_pred HHh
Confidence 443
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.01 E-value=15 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=30.9
Q ss_pred HhcCCcHHHHHHHHHHhccCCCC---------CchHHHHHHHHHhcCChhhHHhhc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPEN---------VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+.||+..|.+.+.+.++..... ..+...++.++...|++++|.+.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l 64 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQAL 64 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 36677777777777766554221 234556777788888888887754
No 398
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.73 E-value=29 Score=30.49 Aligned_cols=71 Identities=13% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcC----ChHHHHHHH-------HhC-CCCCCcchHHHHHHHHHhcCC
Q 035828 672 DEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSG----KLQEAYEFI-------KNL-PIQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g----~~~~A~~~~-------~~~-~~~p~~~~~~~l~~~~~~~g~ 738 (781)
++|..-|++.+ .+.|+. .++..+..+|...+ +..+|.+.| +++ ..+|+...|+.-+....
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----
Confidence 34444444444 558884 77777887776544 333444444 433 36788777776665542
Q ss_pred cHHHHHHHHHHhc
Q 035828 739 TKMGKQVAELLFK 751 (781)
Q Consensus 739 ~~~A~~~~~~~~~ 751 (781)
+|-++..++.+
T Consensus 125 --kap~lh~e~~~ 135 (186)
T PF06552_consen 125 --KAPELHMEIHK 135 (186)
T ss_dssp --THHHHHHHHHH
T ss_pred --hhHHHHHHHHH
Confidence 34445444443
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.66 E-value=49 Score=28.27 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh
Q 035828 59 HFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL 124 (781)
Q Consensus 59 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (781)
.+.+.+.+.|++++..-. .++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 455666777877665543 56677777777788999999998888777777766777777777654
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.33 E-value=2.6e+02 Score=29.20 Aligned_cols=80 Identities=13% Similarity=0.017 Sum_probs=41.7
Q ss_pred HHHhcCCchhhHHHHHHHHhcCCCCChhh--HHHHHHHHhccCcccchhHHHHHHHHhcCCCCcc--hhhhHHHHhhccC
Q 035828 47 ACVENRCVVMGLHFFGEMVEEGIRFDSTT--LLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSS--LCNVFVNMYAKCG 122 (781)
Q Consensus 47 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~ 122 (781)
..++.|+.+. ++.+.+.|..|+... ..+.+..++..|+. ++.+.+.+.|..|+.. ...+-+...++.|
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3344555543 444455676665432 23344444555554 3555566666555432 1223455556667
Q ss_pred ChhhHHHHhccC
Q 035828 123 DLNSSECTFSGM 134 (781)
Q Consensus 123 ~~~~a~~~~~~~ 134 (781)
+.+.+..+++.-
T Consensus 80 ~~~~v~~Ll~~~ 91 (413)
T PHA02875 80 DVKAVEELLDLG 91 (413)
T ss_pred CHHHHHHHHHcC
Confidence 777777766543
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.31 E-value=4e+02 Score=31.43 Aligned_cols=257 Identities=9% Similarity=-0.085 Sum_probs=147.9
Q ss_pred hHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcC
Q 035828 25 SSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGM 104 (781)
Q Consensus 25 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 104 (781)
....+.+.+..++..+-..-+..+.+.+..+ +...+..... .++...-...+.++.+.+........+..+.+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 3345556677888888888888888887654 4444445443 34544445566666554332222333333433
Q ss_pred CCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHh
Q 035828 105 IADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAAS 184 (781)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 184 (781)
.+|+.+-...+..+...+.- ....+...+..+|...-...+.++.+.+..+. +. .... .++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~-~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VA-GAAT---DENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HH-HHhc---CCCHHHHHHHHHHH
Confidence 25666666777777654322 12344555666776666666677666554332 22 2222 34555666666777
Q ss_pred hccCChhH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHH-HHhccCCCCCcccHHHHHHHHHhCCChhHHH
Q 035828 185 ACLGELSY-GKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAE-RAFWGMTCKDVVSWNAIIDGFALNGKFEEAF 262 (781)
Q Consensus 185 ~~~~~~~~-a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 262 (781)
...+..+. +...+..+.. +++..+..+.+.++.+.|..+.+. .+...+..++...-...+.++.+.+. +++.
T Consensus 767 ~~~~~~~~~~~~~L~~ll~-----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG-----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHhccccchhHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 76665433 2222222221 244788888999999988765543 33444445565566667777777775 4566
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHH
Q 035828 263 DLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306 (781)
Q Consensus 263 ~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 306 (781)
..+..+.. .|+...-...+.++.+......+...+....+
T Consensus 841 ~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66666654 45666666777777765333455555655554
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.11 E-value=30 Score=31.96 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCc-------HHHHHHHHHHhccC--CC----CCchHHHHHHHHHhcCChhhHHhh
Q 035828 725 VWGAMLSACSHHGDT-------KMGKQVAELLFKLE--PE----NVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.+-.+.|.|...|+. ..|...++++.+.. |. +....+.+|.++.+.|+.++|.+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344455555555553 34455555555443 22 245677899999999999999874
No 403
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.15 E-value=24 Score=30.92 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCCCCc-chHHHHHHHHHhcC-----------CcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 718 PIQPKP-GVWGAMLSACSHHG-----------DTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 718 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.+.|+- ..+..+..++...+ -+++|...++++...+|++..+...|-..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 466754 46666666664322 26777778888888999988776665543
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.16 E-value=1.3e+02 Score=25.20 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 652 RPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
.++..+--.+..++.+.. +..+...+++++.+. -.|+ ......|.-++.+.|+|++++.+++.+ ..+|+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455556556666776654 567888999998762 3454 455666778889999999999998876 4455543
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.92 E-value=21 Score=36.48 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=76.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.....++++.|+.++.+..+ +.||-..|-..= .++.+.+++..|+.=+..+++. .|+ ...|..=..++.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHH
Confidence 34567899999999999998 788766554443 6788899999988877777644 666 3555555566666778
Q ss_pred hHHHHHHHHhC-CCCCCcchHHHHHHHHHhc
Q 035828 707 LQEAYEFIKNL-PIQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 736 (781)
+.+|+..|+.. .+.|+..-....+..|.+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 88888888776 6889888888888777543
No 406
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.86 E-value=2.2e+02 Score=28.84 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=81.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSV--------ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCI 697 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 697 (781)
+..++++.+|..+-+.....-..-|..|+ ..+-.++...|+...-...+...++...+.-+ ....+.|
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34567888888877766543223343333 33334555667766666666665554333433 3566778
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCc--chHHHH----HHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNLPIQPKP--GVWGAM----LSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
++.|...+.++.|.++..+...+... .-|... ...-...++++.|.+.+-.+..+.|++.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 88999999999999999887432221 122222 1122357899999999999999999744
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.27 E-value=30 Score=31.37 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 718 PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 718 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
...|++..+..++.++...|+.++|.++.+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5679999999999999999999999999999999999
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.27 E-value=34 Score=33.21 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-C-CCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.|--=.+-|.+.+++..|...+.+. . ..+| .+.|..=..+-...|++..|+.-..+++..+|.+..++..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444455566677777777776654 1 1222 22233333333346777777777777777777777777777777
Q ss_pred HHhcCChhhHHh
Q 035828 767 YVALGRWKDAVE 778 (781)
Q Consensus 767 ~~~~g~~~~A~~ 778 (781)
+.+..++.+|.+
T Consensus 163 ~~eLe~~~~a~n 174 (390)
T KOG0551|consen 163 LLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHH
Confidence 777666555543
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.82 E-value=30 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
.+...++++.++. .+-|..-.-.+|.++...|++++|.++++++.+.
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444444444443 2334445555666777777777777777666543
No 410
>PRK12798 chemotaxis protein; Reviewed
Probab=51.55 E-value=2.9e+02 Score=28.37 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhcCC
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACS-HSGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRSGK 706 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 706 (781)
-.|+..+|.+.+..+...-..+....+-.|+.+-. ...+..+|+.+|+... -.-|.. ...-.-+......|+
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR---LlaPGTLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR---LLAPGTLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH---HhCCchHHHHHHHHHhhHHHHhcCc
Confidence 36999999999999988777788888888887754 4679999999999874 235542 233334455678899
Q ss_pred hHHHHHHH----HhCCCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCChhhHH
Q 035828 707 LQEAYEFI----KNLPIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE-NVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 707 ~~~A~~~~----~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.+++..+- ++....|= ...+..++.++.+.++-..-..+.+-+...+|+ ....|..++..-.-.|+.+-|.
T Consensus 201 ~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 201 ADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 98876654 44444442 235666777777777655555555555555654 4456777777777788876553
No 411
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.39 E-value=32 Score=20.89 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCcHHHHHH--HHHHhccCCC
Q 035828 727 GAMLSACSHHGDTKMGKQV--AELLFKLEPE 755 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~ 755 (781)
-.+...+...|++++|..+ ++-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3444555666777777777 3355555544
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.00 E-value=1.6e+02 Score=31.29 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=73.4
Q ss_pred hcCCchhHHHHhhh---hcC---------CCcchhhHHH---HHHHhcCCchhhHHHHHH-------HHhcCC-------
Q 035828 19 NVSYFESSLALFYE---TCN---------KDVVTWNAMI---TACVENRCVVMGLHFFGE-------MVEEGI------- 69 (781)
Q Consensus 19 ~~~~~~~a~~~~~~---~~~---------~~~~~~~~li---~~~~~~~~~~~a~~~~~~-------m~~~~~------- 69 (781)
....+++|.+.|.- ... .++++-++|| .++...|+.+-+.++.++ ...-.+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44556677777753 111 2344444444 567777877665555444 322111
Q ss_pred ------CCChhhHHHH---HHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhh-ccCChhhHHHHhccC
Q 035828 70 ------RFDSTTLLII---VSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYA-KCGDLNSSECTFSGM 134 (781)
Q Consensus 70 ------~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~ 134 (781)
+-+..-|-+| +..+.+.|.+..|.++...+.+....-|+.....+|..|+ +..+++-.++++++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1223334443 4566788999999999998888876667888888888887 667788777777655
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.95 E-value=34 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=16.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+.......|++++|...+++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444556677777777777777664
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.64 E-value=4.3e+02 Score=30.12 Aligned_cols=218 Identities=15% Similarity=0.062 Sum_probs=110.9
Q ss_pred HHhCCChhHHHHHHhhc--CC-CCCHh-------HHHHHHHH-hcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 547 FSQNKAEVRALELFRHL--EF-EPNEI-------SIVSILSA-CTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~--~~-~p~~~-------~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
.....++.+|..+..+. .. .|+.. .++.|-.. ....|+++.+..+-+.....=..-...
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~---------- 494 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR---------- 494 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------
Confidence 45677888888888777 12 22211 23333221 244577888887776655432111111
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHH--HHhcccCcH--HHHHHHHHHhHHHc-CC
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS---VISLL--SACSHSGLV--DEGLQYYNNMLEEY-DV 687 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~l~--~~~~~~~~~--~~a~~~~~~~~~~~-~~ 687 (781)
.....+..+..+..-.|++++|..+..+..+..-+-+... |..+. ..+...|+. .+....+......+ +-
T Consensus 495 --~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 495 --SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred --hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 1222456666777788999999988877765322233332 22222 234456632 33333333332221 11
Q ss_pred CCC----cchHHHHHHHhhhcCChHHHHHH----HHhC-CCCCCc--ch--HHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 688 RPE----TEHHVCIVDMLGRSGKLQEAYEF----IKNL-PIQPKP--GV--WGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 688 ~p~----~~~~~~l~~~~~~~g~~~~A~~~----~~~~-~~~p~~--~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
.|- ..++..+..++.+ ++.+..- +.-. ...|.. .. +..++......||.++|...++++..+.-
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 222 2455555555555 3333322 2211 122221 11 22556666779999999999999987753
Q ss_pred CC-CchH----HHHHH--HHHhcCChhhHHhh
Q 035828 755 EN-VGYY----ISLSN--MYVALGRWKDAVEI 779 (781)
Q Consensus 755 ~~-~~~~----~~l~~--~~~~~g~~~~A~~l 779 (781)
+. +..+ ..++. ....+||..+|...
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 32 2211 12222 23466777776543
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.17 E-value=17 Score=29.91 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=25.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSAC 665 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 665 (781)
-..|.-..|..+|.+|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344777789999999999999998 467776554
No 416
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.13 E-value=80 Score=25.80 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 639 AIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 639 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
..+-+..+..-.+.|++.....-+++|.+.+|+..|..+|+-+..+ ..+....|-.+++ +-..+++++|
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~ELG 136 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNELG 136 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHhC
Confidence 3444555556668999999999999999999999999999988654 3444445655543 4445666665
Q ss_pred C
Q 035828 719 I 719 (781)
Q Consensus 719 ~ 719 (781)
+
T Consensus 137 I 137 (149)
T KOG4077|consen 137 I 137 (149)
T ss_pred C
Confidence 3
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.12 E-value=90 Score=25.53 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=27.4
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 298 RSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.+.+..+..-.+-|++.+...-++++.+.+|+..|.++|+.++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444555666666666666777777777777777766654
No 418
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.66 E-value=1.4e+02 Score=23.78 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035828 191 SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL 270 (781)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (781)
++|..+.+++...+.. . ..+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|--+++...+.++..
T Consensus 23 ~EA~tIa~wL~~~~~~-~--E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 23 QEANTIADWLEQEGEM-E--EVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHTTTT-H--HHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCcH-H--HHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 4444444444444321 1 3333344455667888888866656666777777766654 367777777777777766
Q ss_pred cCCCCCCHHHH
Q 035828 271 MRSVEPDIATV 281 (781)
Q Consensus 271 ~~~~~pd~~t~ 281 (781)
+| .|....|
T Consensus 98 ~g--~~~~q~F 106 (116)
T PF09477_consen 98 SG--SPELQAF 106 (116)
T ss_dssp -S--SHHHHHH
T ss_pred CC--CHHHHHH
Confidence 54 4444333
No 419
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.62 E-value=87 Score=26.74 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
.+.+.+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|.-.-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-----------------R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-----------------RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-----------------HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566677766653 45566666777777788888888887665555554444444444443
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.17 E-value=50 Score=27.93 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+.|.++.+-|+ .....-.........|++.-|.++.+.++..+|++..+-...+.+|.+.|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45556666653 12233334455667999999999999999999999999999999988776443
No 421
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.90 E-value=1.8e+02 Score=32.73 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh
Q 035828 542 CMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA 621 (781)
Q Consensus 542 ~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 621 (781)
++|..+.+.|-++-|+.+.+.- .| -...+...|+++.|.+.-..+ .+..
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~------~t---RF~LaLe~gnle~ale~akkl----------------------dd~d 673 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDE------RT---RFELALECGNLEVALEAAKKL----------------------DDKD 673 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCc------ch---heeeehhcCCHHHHHHHHHhc----------------------CcHH
Confidence 3455555666666666554322 11 112234456666665544332 2444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
+|..|.......|+.+-|...|++.+. |+.|--.|.-.|+.++-.++.+.... +-|... ....-
T Consensus 674 ~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~D~~~---~~qna 737 (1202)
T KOG0292|consen 674 VWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDATG---QFQNA 737 (1202)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhhHH---HHHHH
Confidence 799999999999999999999998874 44444456678898887777665532 233211 11111
Q ss_pred hhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.-.|+.++-.+++...+.-|-. |. ....+|.-++|.++.++..+..
T Consensus 738 lYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 738 LYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcccc
Confidence 2357889999999988755532 21 1236899999999999988754
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.09 E-value=87 Score=27.70 Aligned_cols=48 Identities=8% Similarity=0.121 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHhCCCCCC--HHH-----HHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 635 KGWEAIELFHEMCNSGIRPT--KSS-----VISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~--~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
-.+.|+.+|+...+.--.|. ... -...+..|.+.|.+++|.+++++..
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 35667777777665432221 111 1222335666666666666666553
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.40 E-value=48 Score=21.73 Aligned_cols=34 Identities=3% Similarity=-0.005 Sum_probs=23.4
Q ss_pred HhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHH
Q 035828 149 CLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVA 182 (781)
Q Consensus 149 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 182 (781)
..+.|-+.++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777778888877777777666655554
No 424
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.13 E-value=25 Score=33.46 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=40.3
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP 723 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 723 (781)
.+.|+.++|..+|+..+ .+.|+ +..+..+.......++.-+|-..+-++ .+.|..
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 56789999999999887 45776 567777777777777777887776554 566654
No 425
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.02 E-value=3.4e+02 Score=27.64 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=56.1
Q ss_pred HHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC------
Q 035828 577 SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG------ 650 (781)
Q Consensus 577 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g------ 650 (781)
..+.+.|-+..|.++.+.+...+..-|+.....+|+.|+ .+.++++--+++.+......
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A---------------Lrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA---------------LRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH---------------HhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 355677778888888888887777766665445555542 46777877777777765420
Q ss_pred CCCCHHHHHHHHHHhcccCcH---------------HHHHHHHHHhHHH
Q 035828 651 IRPTKSSVISLLSACSHSGLV---------------DEGLQYYNNMLEE 684 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~~~~~---------------~~a~~~~~~~~~~ 684 (781)
.-|+ ..|...+.-+ ..++. +.|.+.+.+.+..
T Consensus 176 ~lPn-~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 176 LLPN-FAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hCcc-HHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 1232 4555444333 33333 7788887777644
No 426
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=45.61 E-value=3.4e+02 Score=27.50 Aligned_cols=55 Identities=4% Similarity=-0.024 Sum_probs=38.3
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+-|...+|+-.|.-+-+++..++=-.|+ ...|..+++...+.+.|=++-+.++..
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 4566677888887777777666444555 356777888777888777777777665
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.44 E-value=58 Score=21.32 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=16.6
Q ss_pred hcCCchhhHHHHHHHHhcCCCCChhhHHHHH
Q 035828 50 ENRCVVMGLHFFGEMVEEGIRFDSTTLLIIV 80 (781)
Q Consensus 50 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 80 (781)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4445555555555555555555555555444
No 428
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.33 E-value=1.5e+02 Score=30.15 Aligned_cols=55 Identities=15% Similarity=0.015 Sum_probs=34.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHhc--ccCcHHHHHHHHHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSS----VISLLSACS--HSGLVDEGLQYYNN 680 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~~~--~~~~~~~a~~~~~~ 680 (781)
.+..+.+.+++..|.++|+++......|+... |..+..+|. ..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33455677888888888888887765555433 333334443 24567777777765
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.31 E-value=1.6e+02 Score=24.43 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 673 EGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 673 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
.+.++|+.|... ++--. +..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888776 66666 46788888888888888888888764
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.81 E-value=50 Score=31.87 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVIS 660 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 660 (781)
-|+..|..-.+.||+++|+.++++.++.|+.--..+|-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 378888889999999999999999999887655545543
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.33 E-value=74 Score=28.12 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHcCCCCC--cc-----hHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPE--TE-----HHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWG 727 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~--~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 727 (781)
.+.|+.+|+.+.++. -.|. .. .-...+-.|.+.|.+++|.+++++.-..|+.....
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 466777777776552 1221 01 11123334556666666666666552244444333
No 432
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.19 E-value=39 Score=32.01 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.++=..|.+.++++.|....+.. ...| ++..+.--...|.+.|...-|.+-++...+..|+++.+-..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 34445566667777776666554 3323 34344444555666677777777777766777766655443
No 433
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.03 E-value=92 Score=34.05 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----------cchHHHHHHHhh
Q 035828 636 GWEAIELFHEMCNSGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----------TEHHVCIVDMLG 702 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~ 702 (781)
-++-...+.+|+..=-.|+ ..+...++-.|....|++...++++.+.+ -|+ ..+|.--++---
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~----iP~t~~vve~~nv~f~YaFALNRRN 254 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR----IPDTLKVVETHNVRFHYAFALNRRN 254 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh----CcchhhhhccCceEEEeeehhcccC
Confidence 3455567888876544444 34666677788888899998888888743 332 123433334445
Q ss_pred hcCChHHHHHHHHhC-----CCCCCcc-----hHHHH-HH-HHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 703 RSGKLQEAYEFIKNL-----PIQPKPG-----VWGAM-LS-ACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-----~~~p~~~-----~~~~l-~~-~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
+-|+-++|++..-.+ ...||.. +|.-+ +. .+...+..+.|..+|+++++..|..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 667778887765443 3566644 23222 11 1445677888999999999988863
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.91 E-value=1.7e+02 Score=23.38 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 035828 436 SCWNIVIVACTQNGHFQEAIKTFKSMTQ 463 (781)
Q Consensus 436 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 463 (781)
.-|..++..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3477778888888888888888887766
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.29 E-value=3.2e+02 Score=26.25 Aligned_cols=159 Identities=12% Similarity=0.065 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCChhhHHHHHHHhcCccchH-H
Q 035828 415 NCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTF----KSMTQQQNASPDSVTLVNVISACGNLELAF-E 489 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~-~ 489 (781)
+++++++|.+++..- ...+.+.|+..-|.++- +-..+.+ ..+|......++..+...+.-+ .
T Consensus 2 ~~kky~eAidLL~~G------------a~~ll~~~Q~~sg~DL~~lliev~~~~~-~~~~~~~~~rl~~l~~~~~~~~p~ 68 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG------------ALILLKHGQYGSGADLALLLIEVYEKSE-DPVDEESIARLIELISLFPPEEPE 68 (260)
T ss_dssp HTT-HHHHHHHHHHH------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-TT
T ss_pred ccccHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCcch
Confidence 356667776666543 23344555544433332 2222233 5555555555554443332111 1
Q ss_pred HHHHHHHHHH---hcC--CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcC
Q 035828 490 GKSLHGLALK---SLM--GLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLE 564 (781)
Q Consensus 490 a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 564 (781)
-.++.+.+++ .+- .-++.....+...|.+.|++.+|..-|=....++...+..++......|...+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e--------- 139 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE--------- 139 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-----------
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc---------
Confidence 2233333332 222 23677778888889999999988876644333332232223322222222222
Q ss_pred CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHh
Q 035828 565 FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 565 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 598 (781)
+|...-.+ +--+...+++..|...++...+.
T Consensus 140 --~dlfi~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 --ADLFIARA-VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --hhHHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 22222222 22344567788888777665543
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.95 E-value=2.8e+02 Score=26.97 Aligned_cols=80 Identities=6% Similarity=0.017 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----------cCChHH
Q 035828 455 IKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGR----------CRDIKS 524 (781)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~ 524 (781)
.++|+.+.+.+ +.|.-..|..+.-.+.+.=.+..+..+|+.+.... .-+..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~-i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKE-IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcC-CCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46778888777 99999888888877888888888888888886532 225555555543 467777
Q ss_pred HHHHhhhcCCCChhhH
Q 035828 525 ASTVFESCYNCNLCTW 540 (781)
Q Consensus 525 A~~~~~~~~~~~~~~~ 540 (781)
-.++++.-+..|+...
T Consensus 337 nmkLLQ~yp~tdi~~~ 352 (370)
T KOG4567|consen 337 NMKLLQNYPTTDISKM 352 (370)
T ss_pred HHHHHhcCCCCCHHHH
Confidence 7777766665554433
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.56 E-value=89 Score=21.06 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=16.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3445666777777777777666 566544
No 438
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.13 E-value=4.5e+02 Score=27.60 Aligned_cols=367 Identities=11% Similarity=0.034 Sum_probs=187.3
Q ss_pred HHHHHHhcC--CHHHHHHHHHhhcCC-CC-c---ccHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHH
Q 035828 409 LMHMYINCG--DLVAAFSLLQRISHN-SD-T---SCWNIVIV-ACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLV 475 (781)
Q Consensus 409 li~~~~~~~--~~~~a~~~~~~~~~~-~~-~---~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~ 475 (781)
+.+.+...| ++..+.+.++.+-.- |. . .+--.+.. .+.-..+.+.|...+++......--|+. .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 445556666 677777777765322 21 1 11112222 2344678999988888865433244554 3455
Q ss_pred HHHHHhcCcc-chHHHHHHHHHHHH--hcCC-CChHHHHHHHHHHHhcCChHHHHHHhhhcC-CCCh--hhHHHHHHH--
Q 035828 476 NVISACGNLE-LAFEGKSLHGLALK--SLMG-LDTRVQNALITMYGRCRDIKSASTVFESCY-NCNL--CTWNCMISA-- 546 (781)
Q Consensus 476 ~ll~~~~~~~-~~~~a~~~~~~~~~--~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~l~~~-- 546 (781)
.+-+.+.... .+..++.+++..++ ++++ ..-.....|+..+.-..++..|.+++.--. ..+. ..|..++..
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHH
Confidence 5666666655 78888888887764 3332 234445567777888899999999976433 2232 233333222
Q ss_pred ----HHhCCC---hhHHHHHHhhc-C-CCCCHhHHHHHHHH---------hcccCchHHHHHHHHHHHH---hCCCCC--
Q 035828 547 ----FSQNKA---EVRALELFRHL-E-FEPNEISIVSILSA---------CTQLGVLRHGKQIHGHVFH---LGFQEN-- 603 (781)
Q Consensus 547 ----~~~~~~---~~~A~~~~~~~-~-~~p~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~---~~~~~~-- 603 (781)
.....+ +.+++....+| + ..||..- .-.+.. |...|+...++..++.+.+ .+..++
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~-~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQ-KEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Confidence 222234 44444555555 3 5555443 222221 2345777777777766654 222221
Q ss_pred ----------chHHHHHHHhhhcCCChhhHH-----HHHHHHHh--cCChHHHHHHHHHHHhCC-CCCCHH----HHHHH
Q 035828 604 ----------SFISSALLDMYSNCKSNAAWS-----SMISAYGY--HGKGWEAIELFHEMCNSG-IRPTKS----SVISL 661 (781)
Q Consensus 604 ----------~~~~~~l~~~~~~~~~~~~~~-----~li~~~~~--~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~l 661 (781)
+..+.-+... .-.+..|. .+..+|.+ .+..|+|+...++.++.. +.|=.. ++.-.
T Consensus 252 h~e~ilgsps~~l~~wlpke---qicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKE---QICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred ccccccCCCChHHHhhccHh---hhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 1111111000 00111222 22333321 123344555544444322 222111 11112
Q ss_pred HHHh-cccCcHHHHHHHHHHhHHHcCCCCCc---chHH----HHHH-HhhhcCChHHHHHHHHhC-CCCCCcc----hHH
Q 035828 662 LSAC-SHSGLVDEGLQYYNNMLEEYDVRPET---EHHV----CIVD-MLGRSGKLQEAYEFIKNL-PIQPKPG----VWG 727 (781)
Q Consensus 662 ~~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~----~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~ 727 (781)
+-+| ...|+..+|++-..+|.+-..-.|.+ .... .++- -++..|-+++|..-|..+ +...... .-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2233 34799999999999997765555652 1111 2332 335678889998766655 3222211 112
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCC-------chHHHHHHHHHhcCChhhHHhh
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENV-------GYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.+.-.|.+.|+.+.--++++.+-..+.... .+++..|-..+.+|++.||...
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRF 467 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334446677776666666655543332222 2344455556788899998764
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.93 E-value=1.2e+02 Score=26.74 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred HHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChh
Q 035828 64 MVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLN 125 (781)
Q Consensus 64 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 125 (781)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|...-|..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455665554443 444444445566677777777777776666666666666666665543
No 440
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.67 E-value=1.2e+02 Score=25.09 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 742 GKQVAELLFKLE--PENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 742 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
...++.-+.+.+ ..-+..|...+..+...|++.+|.+|++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566555544 4455556666777777777777777653
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.01 E-value=35 Score=32.86 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCeee-hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHH
Q 035828 137 ADTVS-WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLS 178 (781)
Q Consensus 137 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 178 (781)
+|..+ ||.-|....+.||+++|+.++++.++.|+.--..||.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34444 6899999999999999999999999988765444443
No 442
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.69 E-value=2.5e+02 Score=30.51 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCC-----CcccHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 035828 408 ALMHMYINCGDLVAAFSLLQRISHNS-----DTSCWNIVIVACTQNGHFQ--EAIKTFKSMTQQQNASPDSVTLVNVISA 480 (781)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 480 (781)
+|+.+|...|++-.+..+++.....| =...+|..|+.+.+.|.++ ...+-..+..+...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 55566666666666666666553332 1234566666666666532 1122222222222244566666666655
Q ss_pred hcC
Q 035828 481 CGN 483 (781)
Q Consensus 481 ~~~ 483 (781)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.66 E-value=2.2e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHE 645 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 645 (781)
.+..+|+.|...|+-..... .|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~---------------fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL---------------FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH---------------HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999999888766543 688888888999999999999875
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.65 E-value=84 Score=32.22 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=39.5
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCCcc--hHHHHHHHhh--hcCChHHHHHHHHhC
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPETE--HHVCIVDMLG--RSGKLQEAYEFIKNL 717 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 717 (781)
.+.+.+++..|.++++.+.++ ++++.. .|..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445788999999999999865 455443 6667777774 456788999999876
No 445
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.40 E-value=4e+02 Score=26.59 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhh---cCChHHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGR---SGKLQEAY 711 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~ 711 (781)
.+.-+.++++..+. .+-+...+..++..+.+..+.++..+-+++++.. .|+ ...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45667889988876 2335557777888888888999999999999876 554 4556655554433 22455555
Q ss_pred HHHHhC---------CC---CC---C-----cchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 712 EFIKNL---------PI---QP---K-----PGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 712 ~~~~~~---------~~---~p---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+++.+. +. .+ . ..++..+...+..+|-.+.|...++.+++.+
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 554433 11 01 1 1123333344467999999999999999986
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.35 E-value=2.7e+02 Score=26.25 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=80.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH-SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
++......++++++.+.+.++...+...+..-.+.|-.+|-. .|....+...+..+.+...-..+ .....++.-|-+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556667889999999999999998777777666666656533 45556666666666554222211 2233333333211
Q ss_pred ------CChHHHHHHHHhCC----CCCCcc-hHHHH-HHHH---H--hcC-----CcHHHHHHHHHHhcc-----CCCCC
Q 035828 705 ------GKLQEAYEFIKNLP----IQPKPG-VWGAM-LSAC---S--HHG-----DTKMGKQVAELLFKL-----EPENV 757 (781)
Q Consensus 705 ------g~~~~A~~~~~~~~----~~p~~~-~~~~l-~~~~---~--~~g-----~~~~A~~~~~~~~~~-----~p~~~ 757 (781)
.--.+.+.+++..- ..+... .|..+ ++-+ + ..| -.+.|.+.|+++.++ .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 11234555555541 111111 22222 1111 1 112 236677777777653 45555
Q ss_pred chHHH---HHH-HHHhcCChhhHHhhcC
Q 035828 758 GYYIS---LSN-MYVALGRWKDAVEIGK 781 (781)
Q Consensus 758 ~~~~~---l~~-~~~~~g~~~~A~~l~~ 781 (781)
..+-. .+. .|...|+.++|+++.|
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~ 193 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAK 193 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44322 222 3456899999998753
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.35 E-value=3.4e+02 Score=25.35 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=52.7
Q ss_pred hcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC-CChhhHHHHHHHHHhCCChhHHHHH
Q 035828 481 CGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN-CNLCTWNCMISAFSQNKAEVRALEL 559 (781)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 559 (781)
|.+..+..--.++.+-....+++-+..-..+++ +...|++.+|+..++.... .+.+. +..+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn----------------~enV 230 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVN----------------QENV 230 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccc----------------hhhh
Confidence 344444444444444444555555544444443 4556777777766654321 11110 0111
Q ss_pred HhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCch
Q 035828 560 FRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSF 605 (781)
Q Consensus 560 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 605 (781)
|+-. -.|.......++..|. .+++++|.+++..+.+.|+.|.-.
T Consensus 231 fKv~-d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 231 FKVC-DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhcc-CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 1111 2344444455555543 356777777777777777777543
No 448
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.12 E-value=68 Score=34.32 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=24.5
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCcch-HHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQPKPGV-WGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
|.-+|..-.++|+|.+++.++ +.+|..+. ---+..+....|.-++|..........
T Consensus 400 l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 400 LQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 333444445555555555555 23333221 122222333445555555555544433
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.07 E-value=2.7e+02 Score=25.82 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=47.6
Q ss_pred cccCcHHHHHHHHHHhHHHc---CCCCC--cchHHHHHHHhhhcCChHHH-------HHHHHhC---CCCC----C-cch
Q 035828 666 SHSGLVDEGLQYYNNMLEEY---DVRPE--TEHHVCIVDMLGRSGKLQEA-------YEFIKNL---PIQP----K-PGV 725 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A-------~~~~~~~---~~~p----~-~~~ 725 (781)
....++++|.+.+.-++-.. +.+|. ...+..+++.|-..|+.+.. .+.+.+. ...| + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 33445555555554433221 22333 34566677777777774443 3333333 1111 1 122
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.-.++....+.|+.++|.+++.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 2333444567899999999999998765
No 450
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.25 E-value=1.4e+02 Score=25.60 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhcc-CcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh
Q 035828 62 GEMVEEGIRFDSTTLLIIVSALTQM-NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL 124 (781)
Q Consensus 62 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (781)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-|..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344556666554433 344444443 45677777777777777666666666666666666554
No 451
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.08 E-value=1.6e+02 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=22.6
Q ss_pred hhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCCh
Q 035828 18 SNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDS 73 (781)
Q Consensus 18 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 73 (781)
.+.|+++-...+++.....+. -+..+...+..|+ .++++.+.+.|..++.
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 445565555555553333333 2234444444444 3444444445554443
No 452
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=36.77 E-value=1.2e+02 Score=24.32 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=19.7
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
..+...|+.-+|+++.+++...+|-..+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 4566778888888888888776544443
No 453
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.69 E-value=49 Score=27.38 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=23.9
Q ss_pred hCCChhhHHHHHHHHhhcCCCCCcchHHHHHHH
Q 035828 151 HNNYPEKCLLYFREMGWSGEQADNVSLSSAVAA 183 (781)
Q Consensus 151 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 183 (781)
..|.-..|..+|+.|.++|-+||. |..|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 457778899999999999999885 4444443
No 454
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.37 E-value=1.4e+02 Score=31.77 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHhcc--cCcHHHHHHHHHHhHHHcCCCCCcchHH--HHHHHhh-hcCChHHHHHHHHhC-CCCC--Cc
Q 035828 652 RPTKSSVISLLSACSH--SGLVDEGLQYYNNMLEEYDVRPETEHHV--CIVDMLG-RSGKLQEAYEFIKNL-PIQP--KP 723 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~ 723 (781)
-|+..+...++.-... -...+-|-.++..|. .|....|. ++.-.|. -.|+...|..-+..+ ...| ..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 4666666665544332 223445555555552 34432222 3444454 478999999877655 4444 34
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+..-.+.+...+.|-.-.|-.++.+.+.+....|-.++.+|++|....+.++|++-+|
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 5677788888899999999999999999998899999999999999999999998653
No 455
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=2.9e+02 Score=25.91 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=59.4
Q ss_pred HHHHhcCChHHHHHHHHHHHh------CCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 628 SAYGYHGKGWEAIELFHEMCN------SGIRPTKS-----------SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~------~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
+-+.+.|++.+|..-|.+... ..-+|-.. .+.....++...|++-++++...+++.. .|+
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~---~~~ 262 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH---HPG 262 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc---CCc
Confidence 447789999999998887542 11233222 2333445667788999999988888754 555
Q ss_pred -cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 035828 691 -TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK 722 (781)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 722 (781)
...|-.-..+....=+.++|..=|... ...|.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 466665566655555777777655544 55665
No 456
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.58 E-value=2.1e+02 Score=29.74 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=69.8
Q ss_pred hhHHHHHhccCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHHh-----ccc
Q 035828 227 IEAAERAFWGMTCK-DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRS--------VEPDIATVVTLISLCA-----DSL 292 (781)
Q Consensus 227 ~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------~~pd~~t~~~ll~~~~-----~~~ 292 (781)
+++-.++++.+... .......-|++|.+.+++++|...+++-.+.|. +.-...+...++.... +.|
T Consensus 70 ~~e~i~lL~~l~~~g~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHG 149 (480)
T TIGR01503 70 LDEHIELLRTLQEEGGADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHG 149 (480)
T ss_pred HHHHHHHHHHHHHccCCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCC
Confidence 34444444443322 122344456777777888888777776655321 1122333444444331 122
Q ss_pred chhhhhhHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCch
Q 035828 293 LLREGRSVHGYAIRRLLGYD---LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFS 369 (781)
Q Consensus 293 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 369 (781)
...+..+++-+...|+... ..+||. -|.+.=.++++..-|+.+.+ ++......|+..+..
T Consensus 150 -tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdR-------------L~g~y~e~gv~InrE 212 (480)
T TIGR01503 150 -TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDR-------------LVGFYEEQGVHINRE 212 (480)
T ss_pred -CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHH-------------HHHHHHhcCceeccc
Confidence 2335556666666665432 223332 24444556666666665544 444445578888888
Q ss_pred hhhhhhcc
Q 035828 370 TLLAILPS 377 (781)
Q Consensus 370 ~~~~ll~~ 377 (781)
+|..+...
T Consensus 213 ~FGpLtgt 220 (480)
T TIGR01503 213 PFGPLTGT 220 (480)
T ss_pred cccCCCCC
Confidence 88876543
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.58 E-value=3.9e+02 Score=25.01 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=54.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCC
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIR-PTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~-p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 706 (781)
+...|+++.|+++.+...+.|.. |+.+ ++-+++ .|+.........+. |-..++.....+...-....-
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~dm 163 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASA-GESVEPYFLRVFLDLTTEWDM 163 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcCCC
Confidence 34679999999999999988854 4432 222221 12222222222222 333333322222222111111
Q ss_pred hHHHHHHHHhCCCCCCcchHHHHHHHHH---------hcCCcHHHHHHHHHHhccCCCC
Q 035828 707 LQEAYEFIKNLPIQPKPGVWGAMLSACS---------HHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 707 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
.|+. ...-+......+. ..++...|..+++++.+++|.-
T Consensus 164 pd~v-----------rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 164 PDEV-----------RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ChHH-----------HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 1211 1223444444442 3457789999999999999873
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=4.3e+02 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCChhhH
Q 035828 442 IVACTQNGHFQEAIKTFKSMTQQQNASPDSVTL 474 (781)
Q Consensus 442 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~ 474 (781)
.+-.++.+++++|+..|.++..+| +..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg-~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKG-VSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCC-CChhhhhh
Confidence 344556677788888888877776 66665544
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.40 E-value=1.4e+02 Score=26.35 Aligned_cols=67 Identities=6% Similarity=-0.006 Sum_probs=46.4
Q ss_pred hHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccc
Q 035828 25 SSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQ 91 (781)
Q Consensus 25 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 91 (781)
.+.+++....-..+..-..++..+...+++-.|.++++.+.+.+..++..|.--.|..+.+.|-+..
T Consensus 12 ~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3444444332223333456777777778889999999999999988888877777778877775543
No 460
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.38 E-value=4.8e+02 Score=25.93 Aligned_cols=127 Identities=11% Similarity=0.031 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc------cCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCC
Q 035828 634 GKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH------SGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGK 706 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 706 (781)
+-++++..++++....+. |-.+.....|.++-. .-||..-..+|+.+. .+.|++ .+.|--+ ++.+..=
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhh
Confidence 446788899998888765 888888888776632 237777788887775 357775 3444333 3333333
Q ss_pred hHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 707 LQEAYEFIKNLPIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 707 ~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
.+.++.+++.++-.|. ...+..=.+.+.+.|+.++|...|+++..+.++....-+....
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5666777777654442 2233344555778999999999999999999887766554443
No 461
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=5.2e+02 Score=26.27 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=48.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCC--------CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch-------H
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNLPIQP--------KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY-------Y 760 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~ 760 (781)
.|...+...|+.++|.+++.+.+++. .+...-.-++.|...+|+-.|--+-+++.....+.+.. |
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 46666777888888888877764221 11122233455667788888877777777665444442 4
Q ss_pred HHHHHHHHhcCChhhH
Q 035828 761 ISLSNMYVALGRWKDA 776 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A 776 (781)
..+..+..+.+.+=++
T Consensus 216 ~lmI~l~lh~~~Yl~v 231 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNV 231 (439)
T ss_pred HHHHHhcccccchhhH
Confidence 4455555455544333
No 462
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.66 E-value=5.3e+02 Score=26.31 Aligned_cols=43 Identities=23% Similarity=0.150 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..-+|..++|...+..|.++..-..|+.+|...|-.+.|.+++
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778888888999999999999999999999988888765
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.42 E-value=1.6e+02 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=12.4
Q ss_pred HHHHHhhccCChhHHHHHHHHHHH
Q 035828 179 SAVAASACLGELSYGKVIHALGIK 202 (781)
Q Consensus 179 ~ll~~~~~~~~~~~a~~~~~~~~~ 202 (781)
+++.+|...|++-.++++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 455555555555555555554443
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.06 E-value=9.1e+02 Score=28.79 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=87.3
Q ss_pred HHhCCChhHHHHHHHHHHHcC----------------------CCCC---C--HHHHHHHHHHHhcccchhhhhhHHHHH
Q 035828 252 FALNGKFEEAFDLLHEMQLMR----------------------SVEP---D--IATVVTLISLCADSLLLREGRSVHGYA 304 (781)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~~----------------------~~~p---d--~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (781)
|...|+..+|+..|.+....- |-.| . ..-|..+++.+-+.+..+.+.++-...
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 556777778877777663311 0111 2 234677777777788888877777666
Q ss_pred HHhcCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCC
Q 035828 305 IRRLLG--Y-DLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSP 381 (781)
Q Consensus 305 ~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (781)
++.-.. | -..+++++.+.+...|.+-+|...+-.. ||...-...++.+.--+.+.|..+...+ +.-.
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRqlvivLfecg~l~~L~~-------fpfi 1079 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQLVIVLFECGELEALAT-------FPFI 1079 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhccchHHHhh-------CCcc
Confidence 654221 1 2346677777777778777776655333 4433333444444333333333333222 2222
Q ss_pred cchhhhHH-HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 035828 382 ESLEFGKS-IHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQ 427 (781)
Q Consensus 382 ~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (781)
|--++... +++..-+....-....|+.|-.-+...+++.+|-.+.-
T Consensus 1080 gl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1080 GLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred chHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 33344444 22222222222333445555555566777777765544
No 465
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.83 E-value=1.2e+02 Score=22.88 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=23.9
Q ss_pred hcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 035828 223 QCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFE 259 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 259 (781)
...+.+.+.++++.++.+...+|..+..++-..|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3445666777777777777777777777766655443
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.54 E-value=4.4e+02 Score=28.19 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHH--------
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVC-------- 696 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-------- 696 (781)
++.-|.+.++.++|+.++..|.=.-....-. +.+.+.+.+.+..-.++....++.++..+-.++.+-....
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred ------HHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHH
Q 035828 697 ------IVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 697 ------l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
+..-+.|.+++++|.-+--++ .+..-+--+-......|+.+.|..
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi---~~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDI---GDRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc---cchHHHHHHHHHHHhccchhhhhc
No 467
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.45 E-value=1.7e+02 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.|+ ...-..+...+...|++++|++.+-++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555 577778999999999999999876655
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.97 E-value=96 Score=25.09 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=30.7
Q ss_pred HHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCC
Q 035828 145 IMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGE 189 (781)
Q Consensus 145 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 189 (781)
++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 455555666777888888888887777776666666666655554
No 469
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.95 E-value=8.3e+02 Score=28.00 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=32.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035828 217 LISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL 270 (781)
Q Consensus 217 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (781)
+-+.|...|+++.|++.-+.-+..-...+-.-...+.+.+++..|-++|.++.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 445667788888888876654211011122233456677788888888877743
No 470
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.86 E-value=4.1e+02 Score=27.82 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++++....+...+++-.+...-...+.+.+..+-++.++..|++.+|.+++
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL 263 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLL 263 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHH
Confidence 344445555666666555555556678888888899999999999998875
No 471
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.82 E-value=4.7e+02 Score=25.09 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=42.9
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHhcc
Q 035828 217 LISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEP-----DIATVVTLISLCADS 291 (781)
Q Consensus 217 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-----d~~t~~~ll~~~~~~ 291 (781)
++..+.|.=++..-..+|.....| ..|...|.+.|+.+.|-.++--+....+... +...-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333444444444444555544322 2455666667777766666555544322222 333344455555555
Q ss_pred cchhhhhhHHHHHHH
Q 035828 292 LLLREGRSVHGYAIR 306 (781)
Q Consensus 292 ~~~~~a~~~~~~~~~ 306 (781)
++++.+.++.+-+..
T Consensus 234 ~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 234 GDWDLCFELVRFLKA 248 (258)
T ss_pred ccHHHHHHHHHHHHH
Confidence 666666655555544
No 472
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.60 E-value=4.4e+02 Score=24.67 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHHHhc--ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 035828 657 SVISLLSACS--HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACS 734 (781)
Q Consensus 657 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 734 (781)
.|..+++++. ..+++++|.+.+-+- .+. +..-..++.++.+.|+.+-|..+++..+-..+...-..+.....
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP----SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVAL 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC----CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 3555566654 467888888877322 122 23344688888889999999999999864444333333333346
Q ss_pred hcCCcHHHHHHHHHHhc
Q 035828 735 HHGDTKMGKQVAELLFK 751 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~ 751 (781)
.++...+|..+.+...+
T Consensus 152 a~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HcCCHHHHHHHHHhCch
Confidence 77888888887776554
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.41 E-value=2.4e+02 Score=21.53 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHH
Q 035828 388 KSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEA 454 (781)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 454 (781)
.++++.+.+.|+-. ......+-.+-...|+.+.|..++..+. ..+..|...+.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~--rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV--QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc--cCCcHHHHHHHHHHHcCchhhh
Confidence 34455555555322 2222222222235577777788887774 4555677777777777665544
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.24 E-value=1.1e+02 Score=29.11 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCC----CcchHHHHHHHhhhcCChHHHHH
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRP----ETEHHVCIVDMLGRSGKLQEAYE 712 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 712 (781)
.+...|.+.|++++|.++|+.+...+.-.. ...+...+..++.+.|+.++.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 445566667777777777776644332111 12333344444455555544443
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.23 E-value=1.2e+02 Score=24.49 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcc
Q 035828 44 MITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL 89 (781)
Q Consensus 44 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 89 (781)
++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555666677777777777776666666665666666655543
No 476
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.64 E-value=2.4e+02 Score=21.38 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=35.2
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 299 SVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
++|+.....|+..|+.+|..+++...-+-..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7788888888888888888888888777778888888887765
No 477
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.31 E-value=5.8e+02 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=17.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISL 661 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 661 (781)
.+-++..-|...+..|..+++.-=..||.+|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sL 318 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSL 318 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666655444333444444
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.12 E-value=7.3e+02 Score=26.81 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=81.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH-------HhCCCCCC-------------HHHHHHH---HHHhcccCcHHHHHHHHHHhH
Q 035828 626 MISAYGYHGKGWEAIELFHEM-------CNSGIRPT-------------KSSVISL---LSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m-------~~~g~~p~-------------~~~~~~l---~~~~~~~~~~~~a~~~~~~~~ 682 (781)
+...+...|+.+-|.+++++- ....+.|. ..-|.++ +..+.+.|-+..|.++.+-++
T Consensus 290 va~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll 369 (665)
T KOG2422|consen 290 VADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL 369 (665)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 345566778877776666554 22222222 1223333 345667899999999998886
Q ss_pred HHcCCCCC--cchHHHHHHHh-hhcCChHHHHHHHHhC------CCCCCcchHHHHHHHHHhcCC---cHHHHHHHHHHh
Q 035828 683 EEYDVRPE--TEHHVCIVDML-GRSGKLQEAYEFIKNL------PIQPKPGVWGAMLSACSHHGD---TKMGKQVAELLF 750 (781)
Q Consensus 683 ~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 750 (781)
.+.|+ +.....+|+.| .++.+|.=-++++++. ..-|+-..-.+++..+....+ .+.|...+.+++
T Consensus 370 ---sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 370 ---SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred ---hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 45665 56666778877 5777787777776654 356776655666666665544 677888888888
Q ss_pred ccCC
Q 035828 751 KLEP 754 (781)
Q Consensus 751 ~~~p 754 (781)
+..|
T Consensus 447 ~~~P 450 (665)
T KOG2422|consen 447 KHHP 450 (665)
T ss_pred HhCc
Confidence 7666
No 479
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=29.98 E-value=7.5e+02 Score=28.87 Aligned_cols=135 Identities=9% Similarity=-0.011 Sum_probs=60.4
Q ss_pred hccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch--HHHHHHHhhccCChhHH
Q 035828 119 AKCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS--LSSAVAASACLGELSYG 193 (781)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 193 (781)
+..|+.+-...+++.=..+ |..-.+. +...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+.+
T Consensus 533 a~~g~~~~l~~Ll~~G~d~n~~d~~G~Tp-Lh~Aa~~g~~~~v----~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv 607 (823)
T PLN03192 533 ASTGNAALLEELLKAKLDPDIGDSKGRTP-LHIAASKGYEDCV----LVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607 (823)
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcChHHHH----HHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 4456666666655443222 2222233 3333445554332 22333444443321 11223333344555544
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHH
Q 035828 194 KVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC---KDVVSWNAIIDGFALNGKFEEAFDLL 265 (781)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 265 (781)
+.++. .+...+ .......+...+..|+.+-+..+++.-.. +|..-.+.+..+ +..|+.+-+.-++
T Consensus 608 ~~L~~----~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~iv~~Ll 675 (823)
T PLN03192 608 RILYH----FASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVDMVRLLI 675 (823)
T ss_pred HHHHh----cCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHHHHHHHH
Confidence 44432 222222 22233456666777888877777765432 233334444433 4556654444333
No 480
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.84 E-value=7.9e+02 Score=27.10 Aligned_cols=273 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCC-eeehHHHHHHHhhCCChhhHHHHHHHHhhc
Q 035828 90 KQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCAD-TVSWNTIMSGCLHNNYPEKCLLYFREMGWS 168 (781)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 168 (781)
+...++.+.....--.+.+..+..|++.+ |.=+.+.-.++++.+.. . ...+..++.++...|-.....-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCC-CcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHH
Q 035828 169 GEQA-DNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNA 247 (781)
Q Consensus 169 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 247 (781)
.+.+ ........+-........+....+++.+........ ...+.+.+- +|..
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~--~~l~~sa~l------------------------~~~~ 423 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQ--PYLRESALL------------------------AYGS 423 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccccc--HHHHHHHHH------------------------HHHH
Q ss_pred HHHHHHhCCCh------hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHH
Q 035828 248 IIDGFALNGKF------EEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMD 321 (781)
Q Consensus 248 li~~~~~~~~~------~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 321 (781)
+++-+|..... ++....+.+......-.-|..--...|.++...|.......+...+. .....+...-...+.
T Consensus 424 lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~ 502 (574)
T smart00638 424 LVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAIL 502 (574)
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHH
Q ss_pred HHHhc--CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcC
Q 035828 322 FYSKS--NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGF 399 (781)
Q Consensus 322 ~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 399 (781)
++.+. ...+.+..++-.+-. ....+.-.++...+.-...
T Consensus 503 Alr~~a~~~p~~v~~~l~~i~~---------------------------------------n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 503 ALRNLAKRDPRKVQEVLLPIYL---------------------------------------NRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHhCchHHHHHHHHHHc---------------------------------------CCCCChHHHHHHHHHHHhc
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 035828 400 SNNTIGVNALMHMYINCGDLVAAFSLLQRIS 430 (781)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (781)
.|+......+........+.+-+--++..++
T Consensus 544 ~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 544 KPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 481
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.61 E-value=2.9e+02 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
..++..|...++.++|.+.+.++.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhC
Confidence 334455555555555555555554
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.58 E-value=1.1e+02 Score=29.58 Aligned_cols=71 Identities=6% Similarity=0.035 Sum_probs=34.4
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHH-HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGA-MLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
..|...+.-..+.|-+.+.-.++.++ ...| ++..|-. ....+...++.+.+..++.+.++.+|++|.+|..
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 33443333333344444444444443 2333 3333432 2222344566666666666766777666666543
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.84 E-value=1.1e+02 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC
Q 035828 43 AMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN 87 (781)
Q Consensus 43 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 87 (781)
.++..+...+.+-.|.++++.|.+.+...+..|.--.|..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555555556666666666666665555554444444444444
No 484
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.50 E-value=1.8e+02 Score=26.46 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHHHhcccC---------chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 571 SIVSILSACTQLG---------VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 571 ~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
-|..+..+|.+.| +.+.-.++++..++.|++.-..| .|+++|+.-.-.-+.++..+
T Consensus 165 E~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPH---------------IYssiIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 165 EYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPH---------------VYSSIIDKETGNTRVEDVKQ 229 (236)
T ss_pred HHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccc---------------cceeccccccCCCCHHHHHH
Confidence 3445555555443 45666788888888887754332 46666665556677888888
Q ss_pred HHHHHH
Q 035828 642 LFHEMC 647 (781)
Q Consensus 642 ~~~~m~ 647 (781)
++..++
T Consensus 230 l~~~~k 235 (236)
T TIGR03581 230 LLAIVK 235 (236)
T ss_pred HHHHhh
Confidence 887765
No 485
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.21 E-value=95 Score=21.73 Aligned_cols=20 Identities=10% Similarity=-0.174 Sum_probs=7.7
Q ss_pred HHHHHhcccchhhhhhHHHH
Q 035828 284 LISLCADSLLLREGRSVHGY 303 (781)
Q Consensus 284 ll~~~~~~~~~~~a~~~~~~ 303 (781)
+|.++...|++++|.++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444443333
No 486
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.85 E-value=7.6e+02 Score=26.28 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CCCCCCCccchh--HHHH-----HhhcCCchhHHHHhhh---hcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCC
Q 035828 1 RGFLAHLPTSTS--LLTA-----YSNVSYFESSLALFYE---TCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIR 70 (781)
Q Consensus 1 ~g~~~~~~~~~~--l~~~-----~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 70 (781)
+|..|+....+. .+.. ....|..+-+.-+++. ...++..-.+.+..+.. ....-.++++.+.+.|..
T Consensus 57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv~~Ll~~g~~ 133 (480)
T PHA03100 57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIVEYLLDNGAN 133 (480)
T ss_pred cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHHHHHHHcCCC
Q ss_pred CChhhHH--HHHHHHhccCcccchhHHHHHHHHhcCCCCcchh--hhHHHHhhccCChhhHHHHhccCCCCCeeeh----
Q 035828 71 FDSTTLL--IIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLC--NVFVNMYAKCGDLNSSECTFSGMHCADTVSW---- 142 (781)
Q Consensus 71 ~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 142 (781)
++..... ..+...+..|. .-.++.+.+.+.|..++.... .+-+...+..|+.+-+.-+++.-..++....
T Consensus 134 ~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 211 (480)
T PHA03100 134 VNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLL 211 (480)
T ss_pred CCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCc
Q ss_pred ----HHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcc--hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHH
Q 035828 143 ----NTIMSGCLHNNYPEKCLLYFREMGWSGEQADNV--SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNS 216 (781)
Q Consensus 143 ----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 216 (781)
.+.+...+..|+ ...++.+.+.+.|..++.. .-.+.+...+..|+ ..+.+.+.+.|..++.......+
T Consensus 212 ~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----~~iv~~Ll~~gad~n~~d~~g~t 285 (480)
T PHA03100 212 FTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----PEFVKYLLDLGANPNLVNKYGDT 285 (480)
T ss_pred HHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCc
Q ss_pred HHHHHHhcCChhHHHHHhcc
Q 035828 217 LISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 217 ll~~~~~~g~~~~a~~~~~~ 236 (781)
-+...++.++.+-+..+++.
T Consensus 286 pl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 286 PLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred HHHHHHHhCCHHHHHHHHhc
No 487
>PRK12356 glutaminase; Reviewed
Probab=27.60 E-value=4.4e+02 Score=26.11 Aligned_cols=157 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHH
Q 035828 169 GEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAI 248 (781)
Q Consensus 169 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 248 (781)
|++|+...|+++++.-...|.. +.-|+..| ..+..+||.......+++..+++++++..++...-..+
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P------~NPmINAG------AI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v 160 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKP------LNPLVNAG------AIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEV 160 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCC------CCccccHH------HHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHH
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcccchhhhhhHHHHHHHhcCCC-------ChHHHHHHH
Q 035828 249 IDGFALNGKFEEAFDLLHEMQLMRSVEPDIA-TVVTLISLCADSLLLREGRSVHGYAIRRLLGY-------DLLMMNSLM 320 (781)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll 320 (781)
..+-...++-..|+..| |+..|.+..|.. +.....+.|+-....+..-.+-.-+...|+.| +..+...+.
T Consensus 161 ~~SE~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~ 238 (319)
T PRK12356 161 YQSEQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYIL 238 (319)
T ss_pred HHHHHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHhh
Q 035828 321 DFYSKSNSLSKAELLFNAI 339 (781)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~~ 339 (781)
.....+|.++.+-+..-+.
T Consensus 239 s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 239 AEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred HHHHHcCCccchhhHHHHh
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.54 E-value=4.6e+02 Score=23.63 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhcC--------------CCChHHHHHHHHHHHhcCChHHHHHHhhh
Q 035828 477 VISACGNLELAFEGKSLHGLALKSLM--------------GLDTRVQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
++-.|.+..++.+++++++.|....+ .+--.+.|.....+.++|.+|.|..++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34445555556666666555543322 22334445555566666666666666653
No 489
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.37 E-value=5.2e+02 Score=24.21 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 601 (781)
-|.-.+.++...|. ..+| ..+..++-.+...|+++.|..+....+++|..
T Consensus 66 ~Y~p~V~g~L~~g~------------~~qd-~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 66 KYLPWVEGVLAAGA------------GYQD-DVLMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred chHHHHHHHHHcCC------------CCCC-CeeeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 35556666665554 2344 33566677788999999999999999998865
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.06 E-value=2.8e+02 Score=21.04 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY 533 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 533 (781)
++|+.....|+..|+.+|..+++...-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777888888888888888777665555555555555543
No 491
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.37 E-value=8.2e+02 Score=26.13 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=42.9
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS 657 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 657 (781)
.|+...|..+++.+...+ ....++..+.+..+- .+...+..++......+....|+.++++|.+.|..|..+.
T Consensus 213 ~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 213 DGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 356666666665544322 112233333333221 2344555666666666667789999999999999887653
No 492
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.11 E-value=5.5e+02 Score=25.17 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchH
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAF 488 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 488 (781)
++....+.+++....+.++.+ .....-...+..+...|++.+|++++.+..+.- -+...|..+=..- .++.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i---~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l---~~l~~~~c~~~L~---~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI---KTVQQTQSRLQELLEEGDYPGALDLIEECQQLL---EELKGYSCVRHLS---SQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhcccchHHHHHh---HHHH
Confidence 344455555555555555555 233344556777788999999999888876531 1111111111111 1122
Q ss_pred HHHHHHHHHHH-----hcCCCChHHHHHHHHHHHhcCChHHHHHHh
Q 035828 489 EGKSLHGLALK-----SLMGLDTRVQNALITMYGRCRDIKSASTVF 529 (781)
Q Consensus 489 ~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 529 (781)
+.......+.+ .-...|+..|..++.+|.-.|+...+.+-+
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222222221 122568888888888888888776655433
No 493
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=2.8e+02 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChhhHHhh
Q 035828 762 SLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l 779 (781)
.|+.+|...+++.+|+.+
T Consensus 133 rli~Ly~d~~~YteAlaL 150 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALAL 150 (411)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 577888888888888765
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=26.04 E-value=6.4e+02 Score=24.83 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh---CCCCCCcchHHHHHHHH---HhcCCcHHHHHHH
Q 035828 674 GLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN---LPIQPKPGVWGAMLSAC---SHHGDTKMGKQVA 746 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~ 746 (781)
....++.+.+.+++.|+ ..+..........+|+|..|.+.+-- .-..|+....+++-+-+ .-..+++.|.+-+
T Consensus 111 ~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL 190 (432)
T KOG2758|consen 111 RVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36778888888899998 47777888888999999999887533 33344443333332222 2356888888877
Q ss_pred HHHhcc
Q 035828 747 ELLFKL 752 (781)
Q Consensus 747 ~~~~~~ 752 (781)
.++.+.
T Consensus 191 ~rLre~ 196 (432)
T KOG2758|consen 191 TRLREY 196 (432)
T ss_pred HHHHHH
Confidence 776654
No 495
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.73 E-value=5.5e+02 Score=23.91 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHH----HHHHHhhhc
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHV----CIVDMLGRS 704 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~----~l~~~~~~~ 704 (781)
+.+.+......+..+++.. +.++..-++.|+--|.....+.+|-+.|..-. ++.| .....+ .-|....+.
T Consensus 3 ~~~~~~~~~~~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~ 77 (228)
T KOG2659|consen 3 QGRSSSFSTKEEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEE 77 (228)
T ss_pred CCcCcccCchhhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHh
Q ss_pred CChHHHHHHHHhC-----CCCCCcchHHHHHHH--HHhcCCcHHHHHHHHHHhccC-CCCCchHHHHHHHHH
Q 035828 705 GKLQEAYEFIKNL-----PIQPKPGVWGAMLSA--CSHHGDTKMGKQVAELLFKLE-PENVGYYISLSNMYV 768 (781)
Q Consensus 705 g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 768 (781)
|+.++|++.+... ...++...+-..... +.+.|..+.|++.++.=+... ++++..+..+=....
T Consensus 78 G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~ 149 (228)
T KOG2659|consen 78 GQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLA 149 (228)
T ss_pred ccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHH
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.07 E-value=5.3e+02 Score=23.50 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
..+.++..+...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4677888889999999999999999874
No 497
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=25.03 E-value=1.1e+03 Score=27.16 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhC---CCC--CCcc--hHHHHHHHH--HhcCCcHHHHHHHHH
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL---PIQ--PKPG--VWGAMLSAC--SHHGDTKMGKQVAEL 748 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~---~~~--p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~ 748 (781)
.|+......|++++|...++++ ... |.+. .....+... ...||.+.|..+..+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 5666777777777777766655 111 2211 122222221 246777777766666
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.92 E-value=1e+02 Score=25.21 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=26.9
Q ss_pred HHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccC
Q 035828 144 TIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLG 188 (781)
Q Consensus 144 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 188 (781)
.++..+...+.+-.|.++++.|.+.|...+..|.-..|+.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555566667777888888877776666665555554444443
No 499
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.58 E-value=69 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCH
Q 035828 255 NGKFEEAFDLLHEMQLMRSVEPDI 278 (781)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~pd~ 278 (781)
.-+++.|+..|.+++..+.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 457889999999998877677764
No 500
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.49 E-value=1.5e+02 Score=21.14 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 035828 35 NKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQ 85 (781)
Q Consensus 35 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 85 (781)
.|....++.++...++..-.++++..+.+....|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34455577777777777777888888888877774 456666666655553
Done!