Query 035828
Match_columns 781
No_of_seqs 567 out of 3079
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 11:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-39 1.4E-43 355.8 31.5 499 118-769 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-37 5.3E-42 343.2 32.5 491 221-780 63-573 (597)
3 4g26_A Pentatricopeptide repea 99.9 4.5E-27 1.6E-31 246.3 18.7 212 453-704 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-24 1.1E-28 222.3 39.7 280 437-772 103-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 2.3E-27 7.8E-32 248.6 14.9 210 56-290 8-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.9E-28 218.2 34.4 346 410-780 6-362 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.1E-26 211.8 30.1 445 243-766 7-492 (514)
8 1xi4_A Clathrin heavy chain; a 99.9 3.8E-17 1.3E-21 180.6 59.8 722 5-778 359-1337(1630)
9 1xi4_A Clathrin heavy chain; a 99.9 7.2E-17 2.5E-21 178.4 61.3 713 10-777 485-1375(1630)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-20 5.2E-25 203.1 29.8 254 448-724 202-483 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 196.4 30.5 307 435-766 26-372 (450)
12 3fp2_A TPR repeat-containing p 99.9 9.7E-20 3.3E-24 198.0 33.5 425 243-780 26-485 (537)
13 2y4t_A DNAJ homolog subfamily 99.9 8E-19 2.7E-23 185.9 33.7 364 401-777 24-445 (450)
14 3fp2_A TPR repeat-containing p 99.8 6.4E-19 2.2E-23 191.5 29.5 432 211-759 25-498 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 4.6E-17 1.6E-21 166.6 31.1 307 441-772 9-355 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 7.9E-17 2.7E-21 164.8 29.1 288 471-780 3-329 (359)
17 3hym_B Cell division cycle pro 99.8 1.1E-16 3.7E-21 161.6 29.0 290 434-774 21-322 (330)
18 1fch_A Peroxisomal targeting s 99.7 4.7E-17 1.6E-21 167.1 19.2 292 413-781 35-354 (368)
19 3hym_B Cell division cycle pro 99.7 2.6E-16 8.9E-21 158.8 23.6 257 503-780 19-293 (330)
20 1b89_A Protein (clathrin heavy 99.7 6.9E-16 2.4E-20 153.2 25.6 286 18-336 14-305 (449)
21 2ooe_A Cleavage stimulation fa 99.7 1.9E-14 6.4E-19 155.2 36.6 206 554-780 255-486 (530)
22 4eqf_A PEX5-related protein; a 99.7 1.4E-16 4.8E-21 163.3 19.1 265 434-780 64-350 (365)
23 2xm6_A Protein corresponding t 99.7 1.7E-14 6E-19 153.7 34.5 332 405-770 77-453 (490)
24 3mkr_A Coatomer subunit epsilo 99.7 2.1E-15 7.3E-20 147.4 22.8 268 479-778 7-286 (291)
25 2xm6_A Protein corresponding t 99.7 8.5E-14 2.9E-18 148.4 36.1 344 401-780 37-426 (490)
26 1b89_A Protein (clathrin heavy 99.7 4.5E-15 1.5E-19 147.4 23.9 351 223-718 15-370 (449)
27 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.4E-20 147.9 20.7 235 516-775 9-252 (291)
28 2ooe_A Cleavage stimulation fa 99.7 8.5E-14 2.9E-18 150.0 35.5 211 524-755 256-495 (530)
29 3cv0_A Peroxisome targeting si 99.7 2.2E-15 7.4E-20 151.8 20.3 263 511-781 26-310 (327)
30 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5.2E-20 155.5 18.4 226 536-780 64-304 (365)
31 3spa_A Mtrpol, DNA-directed RN 99.7 4.4E-17 1.5E-21 174.5 6.7 146 8-153 128-286 (1134)
32 1fch_A Peroxisomal targeting s 99.6 6.9E-15 2.4E-19 150.9 19.9 246 516-780 35-308 (368)
33 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-16 5.1E-21 170.5 6.6 124 211-335 127-258 (1134)
34 3cv0_A Peroxisome targeting si 99.6 1.4E-14 4.8E-19 145.8 19.4 279 434-755 20-318 (327)
35 2pl2_A Hypothetical conserved 99.6 2E-14 6.8E-19 134.2 17.6 155 622-781 41-209 (217)
36 4g1t_A Interferon-induced prot 99.6 2.9E-13 1E-17 144.0 28.2 348 402-781 50-454 (472)
37 4g1t_A Interferon-induced prot 99.6 1.4E-12 4.9E-17 138.6 29.2 302 417-764 152-471 (472)
38 3uq3_A Heat shock protein STI1 99.5 1.4E-13 4.9E-18 132.9 17.0 218 539-780 7-230 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-13 1.3E-17 131.3 19.6 150 622-779 113-268 (275)
40 3uq3_A Heat shock protein STI1 99.5 6.5E-13 2.2E-17 128.3 18.0 131 631-766 116-256 (258)
41 3u4t_A TPR repeat-containing p 99.5 9.3E-13 3.2E-17 128.4 19.2 241 510-772 7-270 (272)
42 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7E-17 130.5 20.2 243 506-770 97-366 (382)
43 2q7f_A YRRB protein; TPR, prot 99.4 1.8E-12 6.1E-17 123.9 16.6 213 539-772 25-242 (243)
44 2ho1_A Type 4 fimbrial biogene 99.4 9.7E-12 3.3E-16 119.5 21.7 205 538-762 38-248 (252)
45 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-11 4E-16 129.5 23.9 345 380-766 15-399 (452)
46 2h6f_A Protein farnesyltransfe 99.4 3.3E-12 1.1E-16 129.0 17.5 220 538-780 98-341 (382)
47 3vtx_A MAMA; tetratricopeptide 99.4 3.2E-12 1.1E-16 116.0 15.7 157 619-780 4-164 (184)
48 4abn_A Tetratricopeptide repea 99.4 3.4E-12 1.2E-16 134.4 18.1 206 553-780 84-315 (474)
49 2ho1_A Type 4 fimbrial biogene 99.4 8.2E-12 2.8E-16 120.0 19.4 193 569-780 37-232 (252)
50 2pl2_A Hypothetical conserved 99.4 7.1E-12 2.4E-16 116.8 18.2 193 503-717 2-211 (217)
51 1ouv_A Conserved hypothetical 99.4 2.2E-11 7.5E-16 118.6 22.3 228 505-759 5-258 (273)
52 2vq2_A PILW, putative fimbrial 99.4 1.6E-11 5.6E-16 115.5 20.6 206 538-763 9-222 (225)
53 2q7f_A YRRB protein; TPR, prot 99.4 3.5E-12 1.2E-16 121.9 15.2 192 568-780 22-216 (243)
54 3sf4_A G-protein-signaling mod 99.4 3.3E-12 1.1E-16 132.8 15.5 297 436-775 10-365 (406)
55 2vq2_A PILW, putative fimbrial 99.4 1.6E-11 5.6E-16 115.5 18.5 193 569-780 8-205 (225)
56 3e4b_A ALGK; tetratricopeptide 99.4 4.6E-11 1.6E-15 124.9 23.7 333 409-780 9-381 (452)
57 3u4t_A TPR repeat-containing p 99.4 3.6E-11 1.2E-15 117.1 21.1 126 440-568 8-140 (272)
58 1ouv_A Conserved hypothetical 99.4 5.8E-11 2E-15 115.5 22.4 216 536-780 5-245 (273)
59 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.4E-11 4.9E-16 120.1 16.3 209 550-780 18-238 (275)
60 4a1s_A PINS, partner of inscut 99.3 4.1E-12 1.4E-16 132.3 12.2 195 571-780 128-366 (411)
61 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-11 5E-16 134.5 15.0 156 620-780 9-168 (723)
62 3sf4_A G-protein-signaling mod 99.3 1.2E-11 4.1E-16 128.5 13.7 258 511-780 14-330 (406)
63 4e6h_A MRNA 3'-END-processing 99.3 1.2E-08 4E-13 110.2 36.4 226 525-759 328-577 (679)
64 3ro2_A PINS homolog, G-protein 99.3 7.2E-12 2.5E-16 126.4 10.5 229 540-780 46-326 (338)
65 4a1s_A PINS, partner of inscut 99.3 8.5E-11 2.9E-15 122.3 18.0 275 439-755 52-375 (411)
66 3ro2_A PINS homolog, G-protein 99.3 1.2E-10 4.2E-15 117.2 17.7 269 438-755 8-335 (338)
67 3vtx_A MAMA; tetratricopeptide 99.2 7.1E-11 2.4E-15 107.0 14.0 131 622-757 41-175 (184)
68 3as5_A MAMA; tetratricopeptide 99.2 7.8E-11 2.7E-15 106.9 14.0 155 622-780 10-167 (186)
69 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.3E-14 107.9 23.8 215 523-758 33-276 (308)
70 3ulq_A Response regulator aspa 99.2 6.4E-10 2.2E-14 114.2 22.4 231 512-754 109-370 (383)
71 3ulq_A Response regulator aspa 99.2 8.8E-11 3E-15 120.7 14.4 226 543-780 109-362 (383)
72 3nf1_A KLC 1, kinesin light ch 99.2 1.5E-11 5.3E-16 122.4 8.3 227 539-780 29-301 (311)
73 4i17_A Hypothetical protein; T 99.2 7.4E-10 2.5E-14 104.3 18.1 205 536-769 6-226 (228)
74 4e6h_A MRNA 3'-END-processing 99.2 2.9E-08 9.9E-13 107.2 32.4 423 258-780 48-564 (679)
75 4i17_A Hypothetical protein; T 99.2 1.8E-10 6E-15 108.6 13.3 152 619-773 6-169 (228)
76 2ond_A Cleavage stimulation fa 99.2 9.5E-10 3.2E-14 108.8 18.9 206 554-780 33-264 (308)
77 4abn_A Tetratricopeptide repea 99.1 1.1E-09 3.8E-14 115.3 18.7 191 505-717 101-318 (474)
78 3q15_A PSP28, response regulat 99.1 1E-08 3.5E-13 104.9 24.8 228 513-752 108-365 (378)
79 3nf1_A KLC 1, kinesin light ch 99.1 2.5E-10 8.5E-15 113.5 12.4 233 508-755 29-310 (311)
80 1hz4_A MALT regulatory protein 99.1 2.2E-08 7.5E-13 102.3 26.1 200 541-755 97-325 (373)
81 3q15_A PSP28, response regulat 99.1 4.9E-09 1.7E-13 107.3 20.4 227 542-780 106-359 (378)
82 3as5_A MAMA; tetratricopeptide 99.1 2.2E-09 7.5E-14 97.1 15.6 134 622-759 44-180 (186)
83 1qqe_A Vesicular transport pro 99.1 1.9E-09 6.6E-14 105.5 15.6 144 622-767 119-284 (292)
84 4ga2_A E3 SUMO-protein ligase 99.0 3.4E-10 1.2E-14 98.0 7.9 139 629-772 6-149 (150)
85 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.5E-09 1.2E-13 99.1 14.9 157 622-780 6-207 (225)
86 3qky_A Outer membrane assembly 99.0 4.2E-09 1.4E-13 101.4 15.1 155 623-780 55-255 (261)
87 3qky_A Outer membrane assembly 99.0 3E-09 1E-13 102.4 13.3 158 621-780 16-218 (261)
88 4gyw_A UDP-N-acetylglucosamine 99.0 2.1E-09 7.3E-14 117.6 13.2 127 622-753 45-175 (723)
89 3edt_B KLC 2, kinesin light ch 99.0 2E-09 6.9E-14 105.1 11.9 197 569-780 43-275 (283)
90 1qqe_A Vesicular transport pro 99.0 8.7E-09 3E-13 100.8 16.1 159 622-780 79-263 (292)
91 2pzi_A Probable serine/threoni 98.9 7.5E-09 2.6E-13 114.1 13.6 172 580-772 402-583 (681)
92 1hz4_A MALT regulatory protein 98.9 2.4E-07 8.3E-12 94.5 24.1 230 509-755 96-352 (373)
93 2fo7_A Synthetic consensus TPR 98.9 8.8E-09 3E-13 87.3 11.0 130 622-755 3-135 (136)
94 3mv2_B Coatomer subunit epsilo 98.9 1.2E-07 4E-12 90.3 19.3 152 623-779 103-275 (310)
95 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-09 5.9E-14 93.5 6.1 116 661-779 3-121 (150)
96 3mv2_B Coatomer subunit epsilo 98.9 1.8E-07 6.3E-12 89.0 20.4 185 556-762 85-292 (310)
97 2fo7_A Synthetic consensus TPR 98.9 3.3E-08 1.1E-12 83.7 13.8 121 657-780 3-126 (136)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-07 3.7E-12 93.8 19.0 153 623-778 79-253 (307)
99 2r5s_A Uncharacterized protein 98.8 1.3E-08 4.4E-13 91.0 10.0 154 622-780 8-167 (176)
100 3qou_A Protein YBBN; thioredox 98.8 1.7E-08 5.9E-13 98.3 11.4 154 622-780 119-278 (287)
101 3urz_A Uncharacterized protein 98.8 5E-08 1.7E-12 89.8 13.9 138 623-766 57-199 (208)
102 3rjv_A Putative SEL1 repeat pr 98.8 1.9E-07 6.6E-12 86.1 17.6 153 619-780 17-191 (212)
103 3edt_B KLC 2, kinesin light ch 98.8 1.3E-07 4.5E-12 92.0 17.5 168 570-752 86-281 (283)
104 4gco_A Protein STI-1; structur 98.8 2.2E-08 7.5E-13 83.3 9.8 114 651-767 8-125 (126)
105 3gyz_A Chaperone protein IPGC; 98.8 9E-09 3.1E-13 88.3 7.2 104 651-757 31-138 (151)
106 2pzi_A Probable serine/threoni 98.8 2.1E-08 7.3E-13 110.5 10.9 146 631-780 402-557 (681)
107 2vsy_A XCC0866; transferase, g 98.8 2.8E-08 9.5E-13 107.8 11.6 141 634-779 3-150 (568)
108 4gco_A Protein STI-1; structur 98.7 2.1E-08 7.1E-13 83.4 6.7 95 686-780 7-104 (126)
109 3u3w_A Transcriptional activat 98.7 2.9E-07 9.9E-12 90.1 15.6 157 624-780 79-260 (293)
110 2vgx_A Chaperone SYCD; alterna 98.7 1.4E-08 4.7E-13 87.4 5.3 123 641-768 8-134 (148)
111 2vsy_A XCC0866; transferase, g 98.7 1.4E-07 4.6E-12 102.4 14.2 138 622-764 25-169 (568)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.4E-07 2.2E-11 82.9 16.9 140 622-768 8-166 (213)
113 2qfc_A PLCR protein; TPR, HTH, 98.7 3E-07 1E-11 90.0 15.1 157 622-778 77-258 (293)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.1E-07 2.1E-11 83.7 16.3 131 623-758 44-219 (225)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-07 4.1E-12 87.9 11.2 119 657-780 8-144 (213)
116 2lni_A Stress-induced-phosphop 98.7 1.3E-07 4.4E-12 79.7 10.5 116 654-772 15-133 (133)
117 2ifu_A Gamma-SNAP; membrane fu 98.7 3E-08 1E-12 97.8 7.5 156 624-780 40-218 (307)
118 3qou_A Protein YBBN; thioredox 98.6 1.1E-07 3.8E-12 92.5 11.2 126 652-780 114-242 (287)
119 1na0_A Designed protein CTPR3; 98.6 1.7E-07 5.9E-12 77.9 11.0 114 655-771 9-125 (125)
120 2vyi_A SGTA protein; chaperone 98.6 1.8E-07 6.3E-12 78.4 10.8 118 654-774 11-131 (131)
121 1a17_A Serine/threonine protei 98.6 1.9E-07 6.4E-12 82.4 10.6 119 658-779 16-139 (166)
122 3urz_A Uncharacterized protein 98.6 2E-07 7E-12 85.7 11.1 151 624-780 8-180 (208)
123 2r5s_A Uncharacterized protein 98.6 2.8E-07 9.5E-12 82.2 11.6 123 623-750 43-171 (176)
124 3dra_A Protein farnesyltransfe 98.6 1.9E-06 6.6E-11 83.0 17.7 224 521-765 48-301 (306)
125 2vgx_A Chaperone SYCD; alterna 98.6 9.7E-08 3.3E-12 82.0 7.7 91 622-717 23-115 (148)
126 2uy1_A Cleavage stimulation fa 98.6 5.3E-05 1.8E-09 79.4 29.5 125 621-751 287-412 (493)
127 2xcb_A PCRH, regulatory protei 98.6 8.4E-08 2.9E-12 82.0 6.6 126 642-772 6-135 (142)
128 1p5q_A FKBP52, FK506-binding p 98.5 2E-07 7E-12 92.9 9.7 139 634-777 127-284 (336)
129 3gyz_A Chaperone protein IPGC; 98.5 2E-07 6.8E-12 79.9 8.2 95 686-780 30-127 (151)
130 2e2e_A Formate-dependent nitri 98.5 1E-07 3.6E-12 85.2 6.0 132 630-765 20-157 (177)
131 3u3w_A Transcriptional activat 98.5 1.5E-05 5.1E-10 77.8 21.3 127 626-752 121-266 (293)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 2.2E-06 7.6E-11 83.7 15.2 127 626-752 121-266 (293)
133 4f3v_A ESX-1 secretion system 98.5 2.6E-07 8.8E-12 86.8 7.7 117 661-780 108-231 (282)
134 4f3v_A ESX-1 secretion system 98.4 4.4E-07 1.5E-11 85.2 8.8 138 623-765 105-249 (282)
135 2c2l_A CHIP, carboxy terminus 98.4 3.9E-07 1.3E-11 88.2 8.8 60 622-683 40-100 (281)
136 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-06 5.1E-11 71.1 11.2 111 655-768 4-117 (118)
137 1hxi_A PEX5, peroxisome target 98.4 2.4E-07 8.4E-12 76.2 6.0 83 696-778 22-106 (121)
138 2xcb_A PCRH, regulatory protei 98.4 8.2E-07 2.8E-11 75.7 9.4 93 620-717 18-112 (142)
139 2fbn_A 70 kDa peptidylprolyl i 98.4 1.2E-07 4.1E-12 86.6 4.4 148 629-777 13-176 (198)
140 2e2e_A Formate-dependent nitri 98.4 1.1E-06 3.7E-11 78.4 10.5 113 665-780 20-138 (177)
141 3upv_A Heat shock protein STI1 98.4 5.3E-07 1.8E-11 75.1 7.7 112 655-769 4-124 (126)
142 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.3E-11 79.5 11.1 149 631-780 3-170 (203)
143 3sz7_A HSC70 cochaperone (SGT) 98.4 1.5E-06 5E-11 76.4 10.5 109 655-766 11-122 (164)
144 2dba_A Smooth muscle cell asso 98.4 2.2E-06 7.7E-11 73.6 11.5 114 654-770 27-146 (148)
145 3dra_A Protein farnesyltransfe 98.4 7.1E-05 2.4E-09 72.2 22.8 189 521-728 84-298 (306)
146 3upv_A Heat shock protein STI1 98.4 1.5E-06 5E-11 72.3 9.5 93 620-717 4-98 (126)
147 3gw4_A Uncharacterized protein 98.3 7.1E-06 2.4E-10 75.0 14.3 122 622-755 68-199 (203)
148 2kck_A TPR repeat; tetratricop 98.3 9.5E-07 3.2E-11 71.5 7.5 100 655-757 6-111 (112)
149 1wao_1 Serine/threonine protei 98.3 9.8E-07 3.3E-11 92.4 9.2 117 661-780 12-133 (477)
150 3q49_B STIP1 homology and U bo 98.3 1.1E-06 3.6E-11 74.5 7.8 120 653-775 7-134 (137)
151 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-06 4E-11 77.0 7.7 90 691-780 11-102 (164)
152 3q49_B STIP1 homology and U bo 98.3 2E-06 6.9E-11 72.8 8.7 94 619-717 8-103 (137)
153 4gcn_A Protein STI-1; structur 98.3 8.5E-07 2.9E-11 73.7 6.2 88 693-780 10-106 (127)
154 2xev_A YBGF; tetratricopeptide 98.3 1.5E-06 5.1E-11 72.6 7.3 113 658-773 5-126 (129)
155 2lni_A Stress-induced-phosphop 98.3 1.7E-06 5.7E-11 72.7 7.6 90 691-780 16-107 (133)
156 4gcn_A Protein STI-1; structur 98.3 3E-06 1E-10 70.4 8.9 101 657-761 10-120 (127)
157 3rjv_A Putative SEL1 repeat pr 98.3 2.9E-05 9.9E-10 71.3 16.5 160 433-600 16-199 (212)
158 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.6E-06 1.2E-10 87.8 11.3 122 657-778 270-406 (457)
159 2xev_A YBGF; tetratricopeptide 98.3 8.2E-06 2.8E-10 68.0 11.5 98 622-724 4-110 (129)
160 2uy1_A Cleavage stimulation fa 98.2 0.0021 7.3E-08 67.2 32.0 83 256-341 28-117 (493)
161 1elw_A TPR1-domain of HOP; HOP 98.2 1.7E-06 5.8E-11 70.8 6.8 90 691-780 4-95 (118)
162 2dba_A Smooth muscle cell asso 98.2 3E-06 1E-10 72.8 8.3 90 691-780 28-122 (148)
163 1na0_A Designed protein CTPR3; 98.2 2.8E-06 9.7E-11 70.3 7.8 90 691-780 9-100 (125)
164 2c2l_A CHIP, carboxy terminus 98.2 5E-06 1.7E-10 80.4 10.5 154 621-780 5-193 (281)
165 2kck_A TPR repeat; tetratricop 98.2 8.5E-06 2.9E-10 65.7 10.2 90 691-780 6-100 (112)
166 1a17_A Serine/threonine protei 98.2 1.2E-05 4.1E-10 70.5 11.8 126 622-752 15-146 (166)
167 1ihg_A Cyclophilin 40; ppiase 98.2 3.9E-06 1.3E-10 84.5 9.4 122 658-779 226-363 (370)
168 1hxi_A PEX5, peroxisome target 98.2 4.8E-06 1.6E-10 68.4 8.0 97 658-757 20-119 (121)
169 1elr_A TPR2A-domain of HOP; HO 98.1 4.2E-06 1.4E-10 69.9 7.4 111 657-771 6-126 (131)
170 2l6j_A TPR repeat-containing p 98.1 2.2E-06 7.6E-11 69.2 5.5 90 691-780 4-101 (111)
171 1p5q_A FKBP52, FK506-binding p 98.1 1E-05 3.5E-10 80.5 11.0 126 622-752 149-294 (336)
172 3q7a_A Farnesyltransferase alp 98.1 7.5E-05 2.6E-09 72.7 16.5 164 522-706 70-257 (349)
173 2hr2_A Hypothetical protein; a 98.1 2.6E-06 8.8E-11 71.8 5.2 56 725-780 59-125 (159)
174 2if4_A ATFKBP42; FKBP-like, al 98.1 5.3E-06 1.8E-10 82.6 8.5 133 620-757 179-333 (338)
175 2vyi_A SGTA protein; chaperone 98.1 2.5E-05 8.6E-10 65.0 11.5 115 621-739 13-130 (131)
176 1dce_A Protein (RAB geranylger 98.1 5.5E-05 1.9E-09 80.6 16.6 135 636-775 89-244 (567)
177 3k9i_A BH0479 protein; putativ 98.1 1E-06 3.4E-11 72.2 2.5 109 667-775 2-113 (117)
178 3k9i_A BH0479 protein; putativ 98.1 1.7E-06 5.7E-11 70.8 3.9 89 632-723 2-94 (117)
179 3rkv_A Putative peptidylprolyl 98.1 3E-06 1E-10 74.2 5.5 83 691-773 63-148 (162)
180 2fbn_A 70 kDa peptidylprolyl i 98.1 1.6E-06 5.3E-11 79.1 3.4 114 664-780 13-145 (198)
181 2hr2_A Hypothetical protein; a 98.1 3.4E-06 1.2E-10 71.1 5.1 107 657-766 13-145 (159)
182 3ro3_A PINS homolog, G-protein 98.1 3.1E-06 1.1E-10 74.0 4.9 132 621-752 10-158 (164)
183 3lvg_A Clathrin heavy chain 1; 98.0 5.2E-05 1.8E-09 74.6 12.9 431 6-489 53-530 (624)
184 3rkv_A Putative peptidylprolyl 98.0 5.3E-06 1.8E-10 72.6 5.7 58 723-780 63-120 (162)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.4E-10 79.8 9.1 122 656-780 180-322 (338)
186 1elr_A TPR2A-domain of HOP; HO 98.0 5.7E-06 2E-10 69.1 5.3 89 692-780 5-102 (131)
187 3q7a_A Farnesyltransferase alp 98.0 0.0014 4.9E-08 63.7 21.9 130 522-670 105-257 (349)
188 3ro3_A PINS homolog, G-protein 97.9 2E-05 7E-10 68.6 8.0 125 656-780 10-152 (164)
189 4b4t_Q 26S proteasome regulato 97.9 6E-05 2.1E-09 78.4 12.7 158 622-779 57-238 (434)
190 1na3_A Designed protein CTPR2; 97.9 2.8E-05 9.7E-10 59.8 7.4 81 691-771 9-91 (91)
191 3dss_A Geranylgeranyl transfer 97.8 0.0011 3.9E-08 64.2 19.1 230 518-769 41-321 (331)
192 4b4t_Q 26S proteasome regulato 97.8 5.5E-05 1.9E-09 78.7 10.4 153 628-780 12-198 (434)
193 3ma5_A Tetratricopeptide repea 97.8 2.9E-05 9.8E-10 61.0 5.8 82 691-772 7-92 (100)
194 3dss_A Geranylgeranyl transfer 97.8 0.00035 1.2E-08 67.7 14.3 130 636-770 90-240 (331)
195 1wao_1 Serine/threonine protei 97.8 2.6E-05 8.9E-10 81.6 6.5 125 627-756 13-154 (477)
196 3n71_A Histone lysine methyltr 97.7 6.3E-05 2.1E-09 78.0 8.9 116 665-780 319-458 (490)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00014 4.6E-09 75.8 11.3 126 622-752 270-415 (457)
198 2kat_A Uncharacterized protein 97.7 3.7E-05 1.3E-09 62.4 5.1 98 673-773 3-105 (115)
199 1klx_A Cysteine rich protein B 97.7 6.2E-05 2.1E-09 63.3 6.1 113 632-753 7-127 (138)
200 3lvg_A Clathrin heavy chain 1; 97.6 2.3E-05 7.9E-10 77.0 3.1 399 211-781 54-478 (624)
201 1ihg_A Cyclophilin 40; ppiase 97.6 6.5E-05 2.2E-09 75.5 6.2 88 693-780 225-330 (370)
202 1klx_A Cysteine rich protein B 97.5 0.00024 8.2E-09 59.6 7.6 106 667-780 7-120 (138)
203 3bee_A Putative YFRE protein; 97.5 0.00015 5E-09 55.5 5.6 67 691-757 6-77 (93)
204 1zu2_A Mitochondrial import re 97.4 8.6E-05 2.9E-09 62.4 4.0 108 631-764 13-132 (158)
205 3n71_A Histone lysine methyltr 97.4 0.00043 1.5E-08 71.7 10.1 125 628-752 317-464 (490)
206 2l6j_A TPR repeat-containing p 97.4 8.8E-05 3E-09 59.5 3.6 60 621-682 5-65 (111)
207 1zu2_A Mitochondrial import re 97.4 4E-05 1.4E-09 64.4 1.3 89 667-780 14-114 (158)
208 1dce_A Protein (RAB geranylger 97.4 0.0011 3.8E-08 70.6 12.5 134 632-770 41-191 (567)
209 2kat_A Uncharacterized protein 97.4 0.00032 1.1E-08 56.7 6.5 76 637-717 2-79 (115)
210 1na3_A Designed protein CTPR2; 97.2 0.00037 1.3E-08 53.2 4.5 58 723-780 9-66 (91)
211 3qww_A SET and MYND domain-con 97.1 0.0015 5.1E-08 66.5 9.2 95 668-762 311-426 (433)
212 3ma5_A Tetratricopeptide repea 97.0 0.00081 2.8E-08 52.5 5.4 61 654-717 6-67 (100)
213 2kc7_A BFR218_protein; tetratr 97.0 0.002 6.7E-08 50.1 7.4 64 697-760 6-72 (99)
214 3qwp_A SET and MYND domain-con 96.9 0.003 1E-07 64.5 9.7 101 663-763 295-416 (429)
215 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0028 9.6E-08 49.8 7.3 72 693-764 7-87 (104)
216 3ly7_A Transcriptional activat 96.8 0.0031 1.1E-07 61.2 8.7 122 634-757 213-344 (372)
217 2kc7_A BFR218_protein; tetratr 96.8 0.0011 3.9E-08 51.5 4.6 52 729-780 6-58 (99)
218 3qww_A SET and MYND domain-con 96.7 0.00075 2.6E-08 68.7 3.8 78 703-780 310-405 (433)
219 3ly7_A Transcriptional activat 96.6 0.0068 2.3E-07 58.9 9.3 126 651-780 190-333 (372)
220 1pc2_A Mitochondria fission pr 96.6 0.0042 1.4E-07 51.5 6.4 92 672-765 15-113 (152)
221 3qwp_A SET and MYND domain-con 96.4 0.0031 1.1E-07 64.3 5.8 83 698-780 294-394 (429)
222 1wy6_A Hypothetical protein ST 96.3 0.074 2.5E-06 42.1 11.2 132 631-781 18-149 (172)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.08 2.7E-06 59.9 17.1 191 518-779 611-805 (814)
224 3mkq_A Coatomer beta'-subunit; 96.2 0.19 6.5E-06 56.8 19.7 47 515-563 661-707 (814)
225 3bee_A Putative YFRE protein; 96.1 0.024 8.3E-07 43.0 8.0 59 722-780 5-66 (93)
226 1qsa_A Protein (soluble lytic 96.0 0.77 2.6E-05 48.8 21.4 115 634-751 228-347 (618)
227 1nzn_A CGI-135 protein, fissio 95.8 0.058 2E-06 42.9 8.9 95 670-766 16-117 (126)
228 1pc2_A Mitochondria fission pr 95.3 0.081 2.8E-06 43.9 8.7 92 635-729 13-110 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.2 0.019 6.5E-07 44.9 4.5 57 724-780 6-69 (104)
230 4gns_B Protein CSD3, chitin bi 94.7 0.21 7.3E-06 54.0 12.1 50 729-778 343-392 (754)
231 3u64_A Protein TP_0956; tetrat 94.2 0.26 8.8E-06 45.8 9.7 107 635-750 178-296 (301)
232 3u64_A Protein TP_0956; tetrat 93.7 0.067 2.3E-06 49.7 5.1 84 670-756 178-273 (301)
233 4h7y_A Dual specificity protei 93.4 0.11 3.8E-06 42.3 5.1 107 654-762 12-133 (161)
234 1wy6_A Hypothetical protein ST 93.4 2.5 8.4E-05 33.7 12.7 82 519-601 74-157 (172)
235 3mkq_B Coatomer subunit alpha; 93.3 3.4 0.00012 35.2 14.8 104 411-533 13-116 (177)
236 3o48_A Mitochondria fission 1 93.3 0.19 6.6E-06 40.0 6.2 76 689-764 38-119 (134)
237 3mkq_B Coatomer subunit alpha; 93.1 3.7 0.00013 35.0 16.0 47 515-563 14-60 (177)
238 1y8m_A FIS1; mitochondria, unk 92.9 0.6 2.1E-05 37.8 8.7 77 688-764 36-118 (144)
239 3ffl_A Anaphase-promoting comp 91.5 0.52 1.8E-05 39.4 6.9 120 649-780 12-145 (167)
240 1nzn_A CGI-135 protein, fissio 90.4 0.81 2.8E-05 36.4 6.9 94 632-728 13-112 (126)
241 2wpv_A GET4, UPF0363 protein Y 90.0 13 0.00045 35.2 18.0 168 404-596 34-215 (312)
242 3lpz_A GET4 (YOR164C homolog); 89.4 15 0.00052 35.0 18.6 116 109-235 36-160 (336)
243 3ffl_A Anaphase-promoting comp 89.3 2.2 7.4E-05 35.7 8.8 65 622-686 22-94 (167)
244 1wdy_A 2-5A-dependent ribonucl 88.1 17 0.00058 33.9 16.3 210 11-235 6-240 (285)
245 4h7y_A Dual specificity protei 88.0 6.1 0.00021 32.4 10.3 102 534-652 10-126 (161)
246 2wpv_A GET4, UPF0363 protein Y 88.0 18 0.00063 34.2 16.4 116 109-235 34-158 (312)
247 4b4t_P 26S proteasome regulato 86.5 13 0.00045 37.7 14.8 95 623-717 140-244 (445)
248 1qsa_A Protein (soluble lytic 86.3 37 0.0013 36.0 35.4 133 630-777 295-433 (618)
249 4fhn_B Nucleoporin NUP120; pro 86.2 13 0.00045 43.3 16.4 127 572-713 902-1042(1139)
250 1v54_E Cytochrome C oxidase po 86.1 5.9 0.0002 29.6 8.4 72 294-365 26-99 (109)
251 1zbp_A Hypothetical protein VP 85.7 5.4 0.00018 36.5 9.9 122 629-758 6-135 (273)
252 1v54_E Cytochrome C oxidase po 85.4 6.2 0.00021 29.5 8.2 73 635-718 25-97 (109)
253 4ady_A RPN2, 26S proteasome re 85.2 52 0.0018 36.7 32.1 114 632-750 536-656 (963)
254 3ltj_A Alpharep-4; protein eng 85.2 18 0.00063 31.6 13.7 180 28-225 18-197 (201)
255 3ltm_A Alpha-REP4; protein eng 84.6 18 0.00062 32.0 13.5 188 21-226 16-203 (211)
256 4b4t_P 26S proteasome regulato 84.2 38 0.0013 34.3 18.5 258 51-341 29-323 (445)
257 2ff4_A Probable regulatory pro 83.2 3.5 0.00012 41.1 8.6 71 622-693 173-247 (388)
258 3o48_A Mitochondria fission 1 81.8 7.8 0.00027 30.9 8.2 77 650-729 35-117 (134)
259 4gns_B Protein CSD3, chitin bi 81.8 7.1 0.00024 42.3 10.7 53 663-718 345-398 (754)
260 1y8m_A FIS1; mitochondria, unk 81.4 12 0.00041 30.3 9.2 75 652-729 36-116 (144)
261 2y69_E Cytochrome C oxidase su 80.7 11 0.00038 30.0 8.4 70 296-365 71-142 (152)
262 1zbp_A Hypothetical protein VP 79.6 2.2 7.4E-05 39.1 4.9 105 663-780 5-123 (273)
263 2uwj_G Type III export protein 79.5 5.7 0.00019 29.5 6.0 79 87-169 20-98 (115)
264 2ff4_A Probable regulatory pro 79.1 2.6 8.9E-05 42.1 6.0 59 693-751 173-233 (388)
265 2y69_E Cytochrome C oxidase su 78.6 13 0.00044 29.6 8.2 74 635-719 68-141 (152)
266 2p58_C Putative type III secre 78.2 6 0.0002 29.4 5.9 79 87-169 21-99 (116)
267 4g8k_A 2-5A-dependent ribonucl 77.8 51 0.0017 31.7 15.8 276 11-313 26-329 (337)
268 2uwj_G Type III export protein 77.7 19 0.00066 26.8 8.9 85 191-283 23-107 (115)
269 1k1a_A B-cell lymphoma 3-encod 77.3 18 0.00061 32.7 11.0 85 45-134 13-102 (241)
270 2p58_C Putative type III secre 76.9 21 0.00071 26.7 8.3 84 191-282 24-107 (116)
271 1wdy_A 2-5A-dependent ribonucl 75.8 19 0.00066 33.5 11.1 48 290-337 191-240 (285)
272 4fhn_B Nucleoporin NUP120; pro 74.0 28 0.00095 40.6 13.6 126 213-341 814-966 (1139)
273 3ltm_A Alpha-REP4; protein eng 73.0 48 0.0016 29.1 16.4 172 71-256 31-202 (211)
274 3eu9_A Huntingtin-interacting 72.4 42 0.0015 30.0 12.3 115 10-133 10-131 (240)
275 3eiq_C Programmed cell death p 71.9 61 0.0021 31.4 13.1 60 213-272 219-283 (358)
276 2qx5_A Nucleoporin NIC96; mRNA 70.0 1E+02 0.0035 32.8 15.4 22 702-723 549-570 (661)
277 1oyz_A Hypothetical protein YI 69.7 71 0.0024 29.6 17.1 240 4-290 34-279 (280)
278 3esl_A Checkpoint serine/threo 68.1 53 0.0018 28.5 10.4 58 582-654 92-149 (202)
279 3txn_A 26S proteasome regulato 67.4 1E+02 0.0034 30.5 15.0 93 625-717 104-207 (394)
280 3jxi_A Vanilloid receptor-rela 66.6 31 0.0011 31.6 10.0 90 45-134 9-116 (260)
281 3mv2_A Coatomer subunit alpha; 66.1 38 0.0013 31.9 9.9 43 714-756 196-240 (325)
282 1n11_A Ankyrin; clathrin, BAND 65.3 1.1E+02 0.0036 30.7 14.6 208 11-236 15-234 (437)
283 4b4t_R RPN7, 26S proteasome re 65.2 19 0.00064 36.4 8.6 97 657-754 133-239 (429)
284 3eiq_C Programmed cell death p 63.5 48 0.0016 32.1 10.5 68 439-508 221-290 (358)
285 4b4t_R RPN7, 26S proteasome re 63.3 19 0.00066 36.3 8.2 96 622-717 133-234 (429)
286 3b7b_A Euchromatic histone-lys 62.2 68 0.0023 28.6 11.3 19 115-133 81-99 (237)
287 3hra_A Ankyrin repeat family p 60.0 57 0.0019 28.1 10.0 151 14-174 9-173 (201)
288 3mkr_B Coatomer subunit alpha; 59.8 67 0.0023 30.3 10.3 42 714-755 187-230 (320)
289 3lpz_A GET4 (YOR164C homolog); 59.4 1.3E+02 0.0043 28.8 29.9 69 404-485 36-108 (336)
290 3aji_A 26S proteasome non-ATPa 57.1 77 0.0026 28.0 10.7 22 11-32 7-28 (231)
291 4ady_A RPN2, 26S proteasome re 56.2 2.5E+02 0.0086 31.4 38.0 168 547-732 500-670 (963)
292 3kea_A K1L; tropism, ANK repea 55.6 1E+02 0.0035 28.6 11.5 52 216-267 131-183 (285)
293 2nsz_A Programmed cell death p 55.1 31 0.0011 27.5 6.5 65 10-74 10-79 (129)
294 1n11_A Ankyrin; clathrin, BAND 54.7 1.2E+02 0.0041 30.3 12.7 267 43-338 16-300 (437)
295 2qx5_A Nucleoporin NIC96; mRNA 54.7 2.2E+02 0.0076 30.3 18.7 43 406-448 155-199 (661)
296 3kea_A K1L; tropism, ANK repea 54.4 1.4E+02 0.0047 27.7 13.5 204 12-236 33-243 (285)
297 3ljn_A Hypothetical protein; a 54.3 1.1E+02 0.0038 29.6 12.0 217 12-237 22-267 (364)
298 4a1g_A Mitotic checkpoint seri 53.8 92 0.0032 25.6 10.2 54 587-655 83-136 (152)
299 3jxi_A Vanilloid receptor-rela 51.6 83 0.0028 28.6 10.1 115 13-132 8-161 (260)
300 4b4t_S RPN3, 26S proteasome re 49.4 35 0.0012 34.9 7.1 58 656-717 232-296 (523)
301 2etb_A Transient receptor pote 48.7 1.3E+02 0.0044 27.1 10.9 89 44-134 5-113 (256)
302 2ion_A PDCD4, programmed cell 48.6 28 0.00097 28.8 5.4 64 10-73 12-80 (152)
303 3eu9_A Huntingtin-interacting 46.1 88 0.003 27.7 9.2 42 94-135 23-66 (240)
304 3hra_A Ankyrin repeat family p 45.3 1.4E+02 0.0049 25.4 10.7 83 46-133 10-94 (201)
305 2wvi_A Mitotic checkpoint seri 45.2 1.3E+02 0.0046 25.0 9.5 56 586-656 77-132 (164)
306 2fu4_A Ferric uptake regulatio 44.4 61 0.0021 23.1 6.2 62 62-124 6-68 (83)
307 2nsz_A Programmed cell death p 43.4 1.1E+02 0.0037 24.4 7.9 60 213-272 9-73 (129)
308 4gq2_M Nucleoporin NUP120; bet 43.3 1.8E+02 0.006 33.0 12.6 47 725-771 899-950 (950)
309 2zu6_B Programmed cell death p 43.2 2.2E+02 0.0074 26.9 15.5 59 406-465 169-232 (307)
310 3kae_A CDC27, possible protein 42.7 64 0.0022 27.0 6.3 21 664-684 71-91 (242)
311 3ltj_A Alpharep-4; protein eng 42.0 1.7E+02 0.0057 25.1 18.1 16 277-292 151-166 (201)
312 3esl_A Checkpoint serine/threo 41.9 1.2E+02 0.004 26.4 8.2 65 651-717 73-141 (202)
313 2d2s_A Exocyst complex compone 41.7 1.2E+02 0.004 27.3 8.7 88 249-340 25-118 (235)
314 3kae_A CDC27, possible protein 41.5 1.1E+02 0.0037 25.7 7.4 78 700-780 42-137 (242)
315 3ljn_A Hypothetical protein; a 41.5 98 0.0034 30.0 9.3 206 43-267 22-266 (364)
316 3bu8_A Telomeric repeat-bindin 41.0 60 0.0021 28.3 6.1 18 664-681 123-140 (235)
317 2zu6_B Programmed cell death p 40.6 1.4E+02 0.0048 28.1 9.5 56 406-462 6-65 (307)
318 2d2s_A Exocyst complex compone 40.6 54 0.0018 29.5 6.3 89 661-749 24-117 (235)
319 3b7b_A Euchromatic histone-lys 40.5 1.4E+02 0.0048 26.4 9.6 20 114-133 47-66 (237)
320 4b4t_S RPN3, 26S proteasome re 39.6 66 0.0023 32.9 7.4 60 8-67 232-299 (523)
321 3d9h_A CDNA FLJ77766, highly s 39.3 2.1E+02 0.0072 26.4 10.8 214 4-235 9-243 (285)
322 2rfa_A Transient receptor pote 39.1 2E+02 0.0068 25.2 12.7 91 12-108 5-103 (232)
323 3e3v_A Regulatory protein RECX 38.9 1.4E+02 0.0049 25.3 8.5 117 586-721 50-167 (177)
324 4aez_C MAD3, mitotic spindle c 37.7 1.7E+02 0.0057 25.9 8.7 54 586-654 131-184 (223)
325 2ion_A PDCD4, programmed cell 37.2 86 0.003 25.8 6.6 60 213-272 11-75 (152)
326 1ya0_A SMG-7 transcript varian 36.5 52 0.0018 33.7 6.2 74 696-769 157-232 (497)
327 2pnn_A Transient receptor pote 35.3 1.8E+02 0.0063 26.4 9.7 19 115-133 105-123 (273)
328 2fe3_A Peroxide operon regulat 35.1 1.1E+02 0.0039 24.8 7.1 47 623-669 24-70 (145)
329 2w57_A Ferric uptake regulatio 34.9 90 0.0031 25.6 6.4 63 62-125 6-69 (150)
330 2xig_A Ferric uptake regulatio 34.4 88 0.003 25.7 6.3 64 61-125 15-78 (150)
331 1mzb_A Ferric uptake regulatio 33.7 86 0.0029 25.2 6.1 62 63-125 8-70 (136)
332 3txn_A 26S proteasome regulato 33.4 3.6E+02 0.012 26.5 20.6 172 574-760 104-292 (394)
333 2fe3_A Peroxide operon regulat 33.0 98 0.0034 25.2 6.3 61 63-124 12-72 (145)
334 3utm_A Tankyrase-1; tankyrase, 32.1 3.3E+02 0.011 25.7 13.8 114 13-135 27-148 (351)
335 3aji_A 26S proteasome non-ATPa 31.8 2.6E+02 0.0089 24.4 12.2 181 42-236 7-194 (231)
336 2f8y_A Notch homolog 1, transl 31.3 2.6E+02 0.0088 24.2 12.5 44 12-55 27-72 (223)
337 1ug3_A EIF4GI, eukaryotic prot 31.2 1.6E+02 0.0055 28.3 8.5 26 112-137 15-40 (339)
338 4ets_A Ferric uptake regulatio 30.3 1.1E+02 0.0037 25.6 6.2 64 61-125 21-86 (162)
339 4a1g_A Mitotic checkpoint seri 30.3 90 0.0031 25.7 5.5 50 57-106 84-134 (152)
340 1ug3_A EIF4GI, eukaryotic prot 30.2 2E+02 0.0067 27.7 9.0 28 213-240 13-40 (339)
341 1mzb_A Ferric uptake regulatio 29.9 1.2E+02 0.0041 24.3 6.3 47 623-669 20-67 (136)
342 4ets_A Ferric uptake regulatio 29.1 1.1E+02 0.0037 25.6 6.0 55 37-91 31-87 (162)
343 3l6a_A Eukaryotic translation 29.1 3.3E+02 0.011 26.4 10.2 29 213-241 14-42 (364)
344 1oy3_D Transcription factor in 28.8 2.3E+02 0.008 25.7 9.3 19 218-236 196-214 (282)
345 1k1a_A B-cell lymphoma 3-encod 28.5 3E+02 0.01 24.1 13.6 85 80-165 13-102 (241)
346 2rfa_A Transient receptor pote 28.5 2.3E+02 0.0079 24.8 8.9 150 43-205 5-182 (232)
347 3eyy_A Putative iron uptake re 28.1 99 0.0034 25.2 5.5 45 624-669 22-66 (145)
348 2w57_A Ferric uptake regulatio 27.8 1.3E+02 0.0044 24.7 6.2 46 624-669 20-66 (150)
349 2pnn_A Transient receptor pote 27.4 2.9E+02 0.01 25.0 9.6 116 12-132 15-169 (273)
350 2etb_A Transient receptor pote 27.2 1E+02 0.0035 27.8 6.3 54 79-133 5-68 (256)
351 2wvi_A Mitotic checkpoint seri 26.7 1E+02 0.0035 25.7 5.3 50 57-106 79-129 (164)
352 2jy5_A Ubiquilin-1; UBA, alter 26.7 1.1E+02 0.0039 19.5 4.4 38 705-746 10-48 (52)
353 3ubw_A 14-3-3E, 14-3-3 protein 26.5 3.7E+02 0.013 24.5 9.1 155 626-781 37-223 (261)
354 2xig_A Ferric uptake regulatio 26.1 1.4E+02 0.0046 24.5 6.1 51 40-90 28-78 (150)
355 3t8k_A Uncharacterized protein 25.9 3E+02 0.01 23.3 9.2 67 576-655 42-109 (186)
356 2o03_A Probable zinc uptake re 24.9 1.2E+02 0.0042 24.1 5.4 44 44-87 16-59 (131)
357 3eyy_A Putative iron uptake re 24.8 1.6E+02 0.0055 23.9 6.3 35 89-123 33-67 (145)
358 2o03_A Probable zinc uptake re 24.8 94 0.0032 24.7 4.7 44 145-188 16-59 (131)
359 1oai_A Nuclear RNA export fact 24.2 45 0.0015 22.1 2.2 24 255-278 33-56 (59)
360 3ygs_P Procaspase 9; apoptosis 24.1 71 0.0024 23.8 3.6 29 53-85 52-80 (97)
361 3mwm_A ZUR, putative metal upt 23.8 1.1E+02 0.0039 24.6 5.1 44 44-87 19-62 (139)
362 1bd8_A P19INK4D CDK4/6 inhibit 23.4 2.3E+02 0.0078 22.7 7.3 13 223-235 110-122 (156)
363 3ygs_P Procaspase 9; apoptosis 23.1 1.1E+02 0.0036 22.9 4.3 37 520-556 51-87 (97)
364 3uzd_A 14-3-3 protein gamma; s 23.0 4.2E+02 0.014 23.9 8.8 155 626-781 10-198 (248)
365 3mwm_A ZUR, putative metal upt 22.9 91 0.0031 25.2 4.3 43 145-187 19-61 (139)
366 3bqo_A Telomeric repeat-bindin 22.5 1.6E+02 0.0055 25.3 5.6 18 699-716 125-142 (211)
367 3twr_A Tankyrase-2; ankyrin re 21.9 3.1E+02 0.011 22.2 7.9 18 15-32 13-30 (165)
368 2r9g_A AAA ATPase, central reg 21.6 3.9E+02 0.013 23.1 8.3 39 631-670 25-63 (204)
369 2fo1_E LIN-12 protein; beta-ba 21.2 4.4E+02 0.015 25.4 10.0 19 218-236 283-301 (373)
370 4hbd_A KN motif and ankyrin re 20.9 2.7E+02 0.0093 25.5 7.9 61 113-173 113-177 (276)
371 4aez_C MAD3, mitotic spindle c 20.8 1.4E+02 0.0049 26.3 5.3 91 56-149 95-191 (223)
372 2dzn_A Probable 26S proteasome 20.6 4.1E+02 0.014 22.9 10.8 17 16-32 8-24 (228)
373 3t8k_A Uncharacterized protein 20.2 3.9E+02 0.013 22.5 10.8 91 18-108 14-109 (186)
374 2fu4_A Ferric uptake regulatio 20.2 2.3E+02 0.0079 19.8 7.6 61 267-329 7-68 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-39 Score=355.79 Aligned_cols=499 Identities=7% Similarity=-0.068 Sum_probs=327.3
Q ss_pred hhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHH
Q 035828 118 YAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIH 197 (781)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 197 (781)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888999999999999999999999999999984 5578888889999999999999999998
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCCh
Q 035828 198 ALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCK-------------------DVVSWNAIIDGFALNGKF 258 (781)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~ 258 (781)
+.+... + ++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 141 ~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 141 TKEDLY--N--RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHTCGG--G--TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc--c--cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 876543 2 34889999999999999999999999965433 256677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhcccchhh--hhhH-HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 035828 259 EEAFDLLHEMQLMRSVEPD-IATVVTLISLCADSLLLRE--GRSV-HGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAEL 334 (781)
Q Consensus 259 ~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 334 (781)
++|++.|++|.+. .|+ ...+..+...+...+..+. +..+ +..+...+..+...+|
T Consensus 217 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------ 275 (597)
T 2xpi_A 217 DRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY------------------ 275 (597)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH------------------
Confidence 7777777777663 233 2233333322222211111 1111 2222222222222333
Q ss_pred HHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 035828 335 LFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYI 414 (781)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (781)
+.++..|.
T Consensus 276 ------------------------------------------------------------------------~~~~~~~~ 283 (597)
T 2xpi_A 276 ------------------------------------------------------------------------MLKLNKTS 283 (597)
T ss_dssp ------------------------------------------------------------------------HTTSCTTT
T ss_pred ------------------------------------------------------------------------HHHHHHHc
Confidence 33333444
Q ss_pred hcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 415 NCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
+.|++++|.++|+++... ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444555555444221 455566666666666666666666666666543 22445555556666666666666666
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE 569 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~ 569 (781)
++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++ ...|+
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG- 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence 65555332 3355666667777777777777777776553 234456666666666666666666666655 33331
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 570 ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 570 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
+..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 440 -------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 440 -------------------------------------------------THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp -------------------------------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2225677777778888888888888888764
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc---CCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C
Q 035828 650 GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEY---DVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-K 722 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 722 (781)
. +.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 2 3356788888888888888888888888886642 44666 578888999999999999999888876 3334 6
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
..+|..++..|.+.|++++|.+.++++.+++|+++.++..|+.+|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999998854
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-37 Score=343.22 Aligned_cols=491 Identities=7% Similarity=-0.035 Sum_probs=393.5
Q ss_pred HHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhH
Q 035828 221 YSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSV 300 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 300 (781)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..++.+.|++++|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 44567777788888888888899999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCC
Q 035828 301 HGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNS 380 (781)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~ 380 (781)
++.+... +++..+++.++.+|.+.|++++|.++|+++...... ..++..
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------------------~~~~~~ 188 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----------------------------EKNANK 188 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------------
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----------------------------cccccc
Confidence 9987643 678899999999999999999999999964330100 000000
Q ss_pred CcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHH--
Q 035828 381 PESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIK-- 456 (781)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~-- 456 (781)
.++ ...|..++..+++.++.+|.+.|++++|.++|+++.. .| +...+..+...+...+..+.+..
T Consensus 189 ~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 189 LLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp --C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHh
Confidence 011 1134566888999999999999999999999999843 24 34445555554444333322221
Q ss_pred H-HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--
Q 035828 457 T-FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY-- 533 (781)
Q Consensus 457 ~-~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 533 (781)
+ +..+...+ ..+...+|..++..|.+.|++++|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++.
T Consensus 258 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 258 LNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp SCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 1 44554444 4555667777788899999999999999998766 5789999999999999999999999999886
Q ss_pred -CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCC-CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 534 -NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFE-PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 534 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
..+..+|+.++.++.+.|+.++|.++++++ +.. .+..++..+...+.+.|++++|.++|+.+.+... +
T Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~------- 405 (597)
T 2xpi_A 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP--Q------- 405 (597)
T ss_dssp CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-------
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C-------
Confidence 446789999999999999999999999999 544 4678899999999999999999999999987543 2
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP- 689 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 689 (781)
+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.+.|++++|.++|+++.+. .|
T Consensus 406 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 473 (597)
T 2xpi_A 406 --------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQY 473 (597)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 33479999999999999999999999999853 347789999999999999999999999999866 44
Q ss_pred CcchHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 690 ETEHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+..+|..++..|.+.|++++|+++++++ +..|+ ..+|..++..|.+.|++++|...++++.+.+|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 4688999999999999999999999887 44777 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|.+.|++++|.+.+
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999875
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.5e-27 Score=246.33 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhh
Q 035828 453 EAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 453 ~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
.+..+.+++.+.+ ..+. ...++.+|++|++.|++++|.++|++|.+.|++||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3445556666665 4433 3457788888888888888888888888888888888889998888877764332
Q ss_pred cCCCChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHH
Q 035828 532 CYNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISS 608 (781)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 608 (781)
.+.+..++|.++|++| |+.||..||+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--- 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--- 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---
Confidence 1234567788888888 699999999999999999999999999999999999998877
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC
Q 035828 609 ALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR 688 (781)
Q Consensus 609 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 688 (781)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+. +..
T Consensus 142 -------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ 207 (501)
T 4g26_A 142 -------------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQ 207 (501)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSS
T ss_pred -------------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCC
Confidence 677788888889999999999999999999999999999999999999999999999999877 999
Q ss_pred CCcchHHHHHHHhhhc
Q 035828 689 PETEHHVCIVDMLGRS 704 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~ 704 (781)
|+..||+.++..|...
T Consensus 208 ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 208 VSKSTFDMIEEWFKSE 223 (501)
T ss_dssp BCHHHHHHHHHHHHSH
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999888753
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-24 Score=222.34 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=186.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVT-LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITM 515 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 515 (781)
.|..+...+.+.|++++|+..|+++.+. .|+... +..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555555666666666666666666553 243322 2223333334444444444444443321 1123334444444
Q ss_pred HHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCC-HhHHHHHHHHhcccCchHHHHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPN-EISIVSILSACTQLGVLRHGKQIHGH 594 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 594 (781)
+.+.|++++|...|+++. ...|+ ...+..+...+...|++++|...++.
T Consensus 179 ~~~~g~~~~A~~~~~~al------------------------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAV------------------------------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHTTTCHHHHHHHHHHHH------------------------------HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH------------------------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444444332 22232 23333444444444555555555544
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDE 673 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~ 673 (781)
..+... + +..+|..+...+...|++++|++.|+++.+. .| +..++..+..++.+.|++++
T Consensus 229 al~~~p--~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 229 ALSLSP--N---------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHCT--T---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHhhCc--C---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 444321 1 2225777888889999999999999999884 45 46689999999999999999
Q ss_pred HHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 674 GLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|.+.++++++. .| +..++..++..+.+.|++++|++.++++ ...| +...+..++..+.+.|++++|...++++.
T Consensus 290 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 290 AEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 45 4688999999999999999999999987 4555 45688999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCC
Q 035828 751 KLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 751 ~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
++.|+++.++..++.+|...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999988774
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.3e-27 Score=248.61 Aligned_cols=210 Identities=8% Similarity=0.020 Sum_probs=127.0
Q ss_pred hhHHHHHHHHhcCCCCCh-hhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 56 MGLHFFGEMVEEGIRFDS-TTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 56 ~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
.+..+.+++.++++.++. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777765543 457888888888888888888888888888888888888888888877654321
Q ss_pred CCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHH
Q 035828 135 HCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVT 214 (781)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 214 (781)
.+.+.++.|.++|++|.+.|+.||..||+.+|.+|++.|+++.|..+++.|.+.|+.|+ ..+|
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty 143 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSY 143 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--ccee
Confidence 23456788999999999999998877777777777777777777777777777766544 5555
Q ss_pred HHHHHHHHhcCChhHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 215 NSLISMYSQCGDIEAAERAFWGMT----CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 215 ~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|++.+ +.|+..||+.++..++.
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 555555555555444444444443 3344444444444444444444444444444444 44444444444444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.1e-23 Score=218.23 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=293.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC-CCC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccch
Q 035828 410 MHMYINCGDLVAAFSLLQRISH-NSD-TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELA 487 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 487 (781)
...+.+.|++++|...+..+.. .|+ ...+..+...+...|++++|...++...+. .+.+...+..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 4456778999999988877632 353 455666777888899999999999888875 345667888888999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC-ChhhHHHHHHHHHhCCChhHHHHHHhhc-
Q 035828 488 FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC-NLCTWNCMISAFSQNKAEVRALELFRHL- 563 (781)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 563 (781)
++|...++.+.+.. +.+...+..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999888753 2345678889999999999999999998876 33 3457788888899999999999999999
Q ss_pred CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHH
Q 035828 564 EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642 (781)
Q Consensus 564 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 642 (781)
...| +..++..+...+...|+++.|...++.+.+.+. + +...|..+...+...|++++|+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~---------------~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--N---------------FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--T---------------CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C---------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666 467888899999999999999999999988653 2 223688888899999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C-
Q 035828 643 FHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P- 718 (781)
Q Consensus 643 ~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 718 (781)
+++... ..| +..++..+..++...|++++|.+.++++++. .|+ +..|..++..+.+.|++++|++.++++ .
T Consensus 226 ~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 226 YLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999987 456 4678999999999999999999999999854 665 578999999999999999999999987 3
Q ss_pred CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 719 IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+++..++..++..+...|++++|...++++.+..|+++.++..++.+|.+.|++++|++.+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=211.83 Aligned_cols=445 Identities=9% Similarity=-0.043 Sum_probs=275.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHH
Q 035828 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDF 322 (781)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 322 (781)
..+......+.+.|++++|+..|+++.. ..||..++..+..++.+.|+++.|...++.+.+.++ .+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE---LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh---cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456667788889999999999999988 457888888888889999999999999998888753 366788888899
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCc
Q 035828 323 YSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNN 402 (781)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (781)
|...|++++|...|+.+.. .+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~-------------------------------------------------------~~-~~~ 106 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSL-------------------------------------------------------NG-DFN 106 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------------------------------------------------------SS-SCC
T ss_pred HHHHhhHHHHHHHHHHHHh-------------------------------------------------------cC-CCc
Confidence 9999999999999887754 00 111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh---cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------C-
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRI---SHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASP--------D- 470 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p--------~- 470 (781)
......++..+........+.+.+..+ ...|+...+..-...............+...+.... ..+ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK-PELTFANYDESNE 185 (514)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC-CCCCCSSCCSSCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC-HHHHHHHhcCCcH
Confidence 111122222222221122222222111 111222222221111112222222222222221111 111 1
Q ss_pred hhhHHHHHHHhc---CccchHHHHHHHHHHHH-----hcC--------CCChHHHHHHHHHHHhcCChHHHHHHhhhcC-
Q 035828 471 SVTLVNVISACG---NLELAFEGKSLHGLALK-----SLM--------GLDTRVQNALITMYGRCRDIKSASTVFESCY- 533 (781)
Q Consensus 471 ~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 533 (781)
...+......+. +.|+++.|...++.+.+ ..- +.+...+..+...+...|++++|...++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 222222222222 47888888888888776 211 2234566667777888888888888887664
Q ss_pred -CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 534 -NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 534 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
.|+...|..+...+...|++++|+..+++. ...| +...+..+...+...|+++.|...++...+....
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 336 (514)
T 2gw1_A 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE--------- 336 (514)
T ss_dssp HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------
T ss_pred hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------
Confidence 233567777777788888888888888877 5444 4456666777777778888888888777765432
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
+..+|..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|...++++.+...-.|+
T Consensus 337 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 337 --------NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp --------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 1225677777777888888888888877763 1224556777777777788888888888877655222222
Q ss_pred ----cchHHHHHHHhhh---cCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 691 ----TEHHVCIVDMLGR---SGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 691 ----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
...+..++..+.. .|++++|++.++++ ...| +...+..+...+...|++++|...++++.++.|+++..+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 2267777777777 78888888777765 2333 4456677777777788888888888888888887777766
Q ss_pred HHHHH
Q 035828 762 SLSNM 766 (781)
Q Consensus 762 ~l~~~ 766 (781)
.+...
T Consensus 488 ~~~~~ 492 (514)
T 2gw1_A 488 AITFA 492 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=3.8e-17 Score=180.60 Aligned_cols=722 Identities=11% Similarity=0.077 Sum_probs=407.7
Q ss_pred CCCccchhHHHHHhhcCCchhHHHHhhhhcCC---CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHH
Q 035828 5 AHLPTSTSLLTAYSNVSYFESSLALFYETCNK---DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVS 81 (781)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 81 (781)
.--.+|-.-...+...|++++|-++-...|.. +..|.+.+-.+=...|.+.-.+.+|..+.+.| +++..-=--+++
T Consensus 359 Gad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r 437 (1630)
T 1xi4_A 359 GAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCR 437 (1630)
T ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 33355555566677777777777776655543 44555555555556677777788888888887 555443333444
Q ss_pred HHhccCcccchhHHHHH------------HHHhc------CCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehH
Q 035828 82 ALTQMNCLKQGRVVHCL------------SIKAG------MIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWN 143 (781)
Q Consensus 82 ~~~~~~~~~~a~~~~~~------------~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (781)
....+|+.+-....+.+ +...+ +-....+....+.++++.|+++++...-+... ...-|.
T Consensus 438 ~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~ 515 (1630)
T 1xi4_A 438 PVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVG--YTPDWI 515 (1630)
T ss_pred HHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccC--CCccHH
Confidence 44444433222222211 11110 01112344577888888888888888876543 133477
Q ss_pred HHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCC---------------
Q 035828 144 TIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDS--------------- 208 (781)
Q Consensus 144 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 208 (781)
.|++.+.+. ++++|.++...+.+.. |.......++..+...+.+..+..++-...+.+-+..
T Consensus 516 ~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~ 592 (1630)
T 1xi4_A 516 FLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHA 592 (1630)
T ss_pred HHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccc
Confidence 888887765 5899999888887763 3455677888888888888888888777766653311
Q ss_pred C------------chhHHHHHHHHHHhcCChhHHHHHhccCC--CC-----CcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 035828 209 P------------YVSVTNSLISMYSQCGDIEAAERAFWGMT--CK-----DVVSWNAIIDGFALNGKFEEAFDLLHEMQ 269 (781)
Q Consensus 209 p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (781)
| +..-+..+...|-+.|-++.|++.+..+. ++ ....-.-++. |...=..+.+++++++|.
T Consensus 593 pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l 671 (1630)
T 1xi4_A 593 PQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVN-YFGSLSVEDSLECLRAML 671 (1630)
T ss_pred hhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHH-HHhcCCHHHHHHHHHHHH
Confidence 1 12223445566777888888888887654 11 1111222333 334456688888888887
Q ss_pred HcCCCCCCHH-------------HHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 035828 270 LMRSVEPDIA-------------TVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLF 336 (781)
Q Consensus 270 ~~~~~~pd~~-------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 336 (781)
... ++-+.. +-..++..+-+.+.++...-.+..++. ..-|+.+....|.+.++.|++.+++++.
T Consensus 672 ~~n-~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~ 748 (1630)
T 1xi4_A 672 SAN-IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERIC 748 (1630)
T ss_pred HHh-HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHh
Confidence 643 332221 122333333333333333333333322 3446667777888888888777777665
Q ss_pred HhhCC--------------CCC---------eeeH------------------------------------------HHH
Q 035828 337 NAIAP--------------MND---------LVSW------------------------------------------NSM 351 (781)
Q Consensus 337 ~~~~~--------------~~~---------~~~~------------------------------------------~~l 351 (781)
++-.- -+| ...+ ...
T Consensus 749 res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ 828 (1630)
T 1xi4_A 749 RESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDV 828 (1630)
T ss_pred ccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHH
Confidence 43100 000 0000 000
Q ss_pred HHH-------------HHHHHHH---------------hcccCCchhhhhhhcccCCC----------------------
Q 035828 352 ISG-------------LFKEMLY---------------LCSQFSFSTLLAILPSCNSP---------------------- 381 (781)
Q Consensus 352 l~~-------------l~~~~~~---------------~~~~~~~~~~~~ll~~~~~~---------------------- 381 (781)
|+. |..+... ..-..+..+.+++.+.+...
T Consensus 829 ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgky 908 (1630)
T 1xi4_A 829 IKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKY 908 (1630)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHH
Confidence 000 1111000 01112222333332222211
Q ss_pred -----------------------------cchh------------------------hhHHHHHHHHHhc--CCCchhHH
Q 035828 382 -----------------------------ESLE------------------------FGKSIHCWQLKLG--FSNNTIGV 406 (781)
Q Consensus 382 -----------------------------~~~~------------------------~a~~~~~~~~~~g--~~~~~~~~ 406 (781)
+-++ .-+++.++..... -..++.-.
T Consensus 909 ce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 909 CEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred HHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHh
Confidence 0000 0011112211111 12233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCC-----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHh
Q 035828 407 NALMHMYINCGDLVAAFSLLQRISHNSD-----TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481 (781)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 481 (781)
...+.+|...|.+.+|.++++++...|+ ...-+.++.+..+. +..+..++..+.... . ...+-..|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d------~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D------APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c------HHHHHHHH
Confidence 5667777788888888888887754443 23344455555555 344444444444311 1 22244556
Q ss_pred cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
...|.+++|..+|+... -.....+.+ +...|++++|.++.+++.. ..+|..+..++...|++++|+..|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67788888888887752 111111222 2266778888888776643 4578888888888888888888886
Q ss_pred hcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC------------CChhhHHHHHHH
Q 035828 562 HLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC------------KSNAAWSSMISA 629 (781)
Q Consensus 562 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~li~~ 629 (781)
+. -|...|.-+..+|.+.|++++|.+.+.+..+..-.|...+ .+.-+|++. ++...|..+...
T Consensus 1130 KA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~fI~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1130 KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 1204 (1630)
T ss_pred hc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH
Confidence 54 3455667788888888888888888887766552222221 122222221 334445555666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. -+..+|..+..++...|++..
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHH
Confidence 66666666666666663 25666666666666666666666554 123556666666666666666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--CChhhHHh
Q 035828 710 AYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL--GRWKDAVE 778 (781)
Q Consensus 710 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 778 (781)
|....... ..++..+..++..|.+.|.+++|+.+++..+.++|.+...+..|+.+|.+- ++.-|+++
T Consensus 1269 A~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1269 AQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66554432 233445667777888889999999999999888888888888888877654 34444443
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=7.2e-17 Score=178.39 Aligned_cols=713 Identities=11% Similarity=0.054 Sum_probs=441.9
Q ss_pred chhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcc
Q 035828 10 STSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL 89 (781)
Q Consensus 10 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 89 (781)
-+..+..++..|+++++...-++.. ..--|..|+..+.+. +++.|.++...+.+.. |.....+.++..+...+.+
T Consensus 485 ~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~i 559 (1630)
T 1xi4_A 485 PNKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLI 559 (1630)
T ss_pred cHHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcH
Confidence 3456667777777777776655421 122367778777755 5888888888777653 2455577788888888888
Q ss_pred cchhHHHHHHHHhcCCC-----------------------------CcchhhhHHHHhhccCChhhHHHHhccCCC----
Q 035828 90 KQGRVVHCLSIKAGMIA-----------------------------DSSLCNVFVNMYAKCGDLNSSECTFSGMHC---- 136 (781)
Q Consensus 90 ~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 136 (781)
.++..++-+..+.+-+- +..-+..+...|-+.|-+.+|.+.+..+..
T Consensus 560 q~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~ 639 (1630)
T 1xi4_A 560 QQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRA 639 (1630)
T ss_pred HHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHH
Confidence 88888877776655221 223344556677788888888888876531
Q ss_pred ---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch-------------HHHHHHHhhccCChhHHHHHHHHH
Q 035828 137 ---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS-------------LSSAVAASACLGELSYGKVIHALG 200 (781)
Q Consensus 137 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------------~~~ll~~~~~~~~~~~a~~~~~~~ 200 (781)
.+...-.-|+.-+ ..=+.+.++++++.|...+++-|-.. -..++..+.+.+.++...-++...
T Consensus 640 ~~~~~~~~~~~l~~~f-g~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~si 718 (1630)
T 1xi4_A 640 VVHTHLLNPEWLVNYF-GSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSI 718 (1630)
T ss_pred hhccCcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhh
Confidence 1122222333333 33567888888888887655433222 223333443444444333333333
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC-------------------CC-----CcccHH----------
Q 035828 201 IKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT-------------------CK-----DVVSWN---------- 246 (781)
Q Consensus 201 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------~~-----~~~~~~---------- 246 (781)
+. ...+ +.+....|.+.++.|++.+.+++.++-. .| |...|-
T Consensus 719 v~--~s~d--~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n 794 (1630)
T 1xi4_A 719 VN--FSQD--PDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 794 (1630)
T ss_pred cc--ccCC--hHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhc
Confidence 22 2334 7788899999999999999888886643 01 111111
Q ss_pred ---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH-------------HHHHHHhcccchhhhhhHHHHHHHhcCC
Q 035828 247 ---AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVV-------------TLISLCADSLLLREGRSVHGYAIRRLLG 310 (781)
Q Consensus 247 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 310 (781)
..|..|++.-++..+-.+.-.+.. +.-+..... -|+..+-+.+++....-+++.-...|.+
T Consensus 795 ~~~~~ie~yv~~vnp~~~p~Vvg~lld---~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~ 871 (1630)
T 1xi4_A 795 NLQKYIEIYVQKVNPSRLPVVIGGLLD---VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE 871 (1630)
T ss_pred CchhHHHHHHhccCCcccchhhhhhhc---CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123333333333333233222222 112222222 2333333444444445555555566654
Q ss_pred CChHHHHHHHHHHHhcCCHHHH-------------HHHHHhh-----------------------------------CCC
Q 035828 311 YDLLMMNSLMDFYSKSNSLSKA-------------ELLFNAI-----------------------------------APM 342 (781)
Q Consensus 311 ~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~-----------------------------------~~~ 342 (781)
++.++|+|...|...++-.+. -+..++- .+.
T Consensus 872 -~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r 950 (1630)
T 1xi4_A 872 -EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR 950 (1630)
T ss_pred -CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh
Confidence 788888888888764432221 1111100 001
Q ss_pred CCeeeHHHHHHH-------HHHHHHHhc--ccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc--CCCchhHHHHHHH
Q 035828 343 NDLVSWNSMISG-------LFKEMLYLC--SQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG--FSNNTIGVNALMH 411 (781)
Q Consensus 343 ~~~~~~~~ll~~-------l~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 411 (781)
.|...|..++.. +...-.... -..+..-.....+++...|...++.++++.+.-.+ +.-+...-+.++.
T Consensus 951 ~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~ 1030 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL 1030 (1630)
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 133333333311 222111111 12344455666777778999999999999887332 1234456666777
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHH
Q 035828 412 MYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGK 491 (781)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (781)
+..+. +..+..+..+++. + ....-+...+...|.+++|..+|++... + ......++. ..+++++|.
T Consensus 1031 tAIka-D~~Rv~eyI~kLd-~---~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~-~~A~~VLie---~i~nldrAi 1096 (1630)
T 1xi4_A 1031 TAIKA-DRTRVMEYINRLD-N---YDAPDIANIAISNELFEEAFAIFRKFDV-----N-TSAVQVLIE---HIGNLDRAY 1096 (1630)
T ss_pred HHHHh-ChhhHHHHHHHhh-h---ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----H-HHHHHHHHH---HHhhHHHHH
Confidence 77666 5566666666652 2 2245567778888889999888887521 1 111222222 566777777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHh
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEI 570 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~ 570 (781)
++..+. -+..+|..+..++.+.|++++|...|.+. .+...|..++.++.+.|++++|+++|... ...++..
T Consensus 1097 E~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~ 1168 (1630)
T 1xi4_A 1097 EFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 1168 (1630)
T ss_pred HHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc
Confidence 777654 24677788888888888888888888664 55667777888888888888888888766 3334433
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC----------CChhhHHHHHHHHHhcCChHHHH
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC----------KSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
..+.+..+|++.++++....+.+ .++...+..+-+.+... ..+..|..+...|.+.|++++|+
T Consensus 1169 Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHH
Confidence 33446667777766665443321 11222222222222222 22447999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 035828 641 ELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI 719 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 719 (781)
+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +.
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999873 4589999999999999999999877542 445666889999999999999999999876 55
Q ss_pred CCC-cchHHHHHHHHHh--cCCcHHHHHHHHHHhccCC-----CCCchHHHHHHHHHhcCChhhHH
Q 035828 720 QPK-PGVWGAMLSACSH--HGDTKMGKQVAELLFKLEP-----ENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 720 ~p~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.|. ...|..+...+.+ .++..++.+++..-..+.| +++..|..+..+|.+.|+|+.|.
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 553 3456556555554 5788888888887777666 78889999999999999999998
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-20 Score=203.12 Aligned_cols=254 Identities=7% Similarity=-0.019 Sum_probs=190.0
Q ss_pred CCChHHHHHHHHHHHH-----cCCCCC--------ChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 448 NGHFQEAIKTFKSMTQ-----QQNASP--------DSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 448 ~~~~~~A~~~~~~m~~-----~~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
.|++++|+..|+++.+ .. ..| +...+..+...+...|+++.|...++.+.+.... ...+..+..
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~ 278 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLD-KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL 278 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhc-cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence 5666666666666655 21 112 1234445555566667777777777766665433 666677777
Q ss_pred HHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHH
Q 035828 515 MYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGK 589 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 589 (781)
.|...|++++|...++.+. ..+...|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888888887665 234567888888888899999999999888 5555 4567777888889999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGI-RPT----KSSVISLLSA 664 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~ 664 (781)
..++.+.+.... +..+|..+...+...|++++|+..++++.+... .|+ ...+..+...
T Consensus 359 ~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 359 TLFSEAKRKFPE-----------------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHHHHSTT-----------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHccc-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999988775432 223688899999999999999999999987321 111 3388889999
Q ss_pred hcc---cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 665 CSH---SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 665 ~~~---~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
+.. .|++++|...++++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 999 99999999999999865 565 578889999999999999999999987 4556543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=3.5e-20 Score=196.41 Aligned_cols=307 Identities=9% Similarity=0.011 Sum_probs=227.1
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|++++|...++.+.+.+. .+...+..+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 444555555666666666666666665553 223445555555556666666666666666555432 24555666666
Q ss_pred HHHhcCChHHHHHHhhhcCCCC---h---hhHHHH------------HHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHH
Q 035828 515 MYGRCRDIKSASTVFESCYNCN---L---CTWNCM------------ISAFSQNKAEVRALELFRHL-EFEP-NEISIVS 574 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ 574 (781)
+|.+.|++++|...|+.+...+ . ..|..+ ...+...|++++|+..|+++ ...| +...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 6777777777777776654322 2 334333 44478889999999999988 5444 5677888
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 575 ILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 575 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+..++...|+++.|...++.+.+.... +..+|..+...|...|++++|++.|+++.. ..|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~ 243 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKND-----------------NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 243 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 888899999999999999988775321 233688889999999999999999999987 4554
Q ss_pred HH-HHHHH------------HHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 655 KS-SVISL------------LSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 655 ~~-~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
.. .+..+ ...|...|++++|...++++++. .|+ ..+|..++.++.+.|++++|++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 44444 78889999999999999999875 555 34788999999999999999999998
Q ss_pred C-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 717 L-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 717 ~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+ ...| +...|..++.+|...|++++|...+++++++.|+++.++..++.+
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7 4445 567899999999999999999999999999999999999999955
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=9.7e-20 Score=197.96 Aligned_cols=425 Identities=11% Similarity=0.038 Sum_probs=220.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHH
Q 035828 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDF 322 (781)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 322 (781)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++.+.|+++.|.+.++.+.+.++. +...+..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 456667777788888888888888887742 335667777777777888888888888887776533 56777778888
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCc
Q 035828 323 YSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNN 402 (781)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (781)
+...|++++|...|+.+...++.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------------------------------- 125 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDF--------------------------------------------------------- 125 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHhcCCCC---------------------------------------------------------
Confidence 88888888888888644331100
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRISHN-----SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
....+..+...+....|...++.+... +........+..+....+.+.+...+..... ..|....+...
T Consensus 126 ---~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 199 (537)
T 3fp2_A 126 ---DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN---YDTAYALLSDA 199 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS---SCSSHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc---cccHHHHHHHH
Confidence 001111222333344555555555322 1222234444555555565555544433222 22222222222
Q ss_pred HHH-hcCc--------cchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHH
Q 035828 478 ISA-CGNL--------ELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFS 548 (781)
Q Consensus 478 l~~-~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 548 (781)
+.. +... +++++|..+++.+.+.... +...+..+ ..++..+...+.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~------------------------~~~~~~~g~~~~ 254 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA------------------------ALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH------------------------HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH------------------------HHHHHHHHHHHH
Confidence 221 1111 2444555555544433211 11110000 012333444455
Q ss_pred hCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHH
Q 035828 549 QNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMI 627 (781)
Q Consensus 549 ~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 627 (781)
..|++++|+..|++. ...|+...+..+...+...|+++.|...++.+.+.... +..+|..+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~ 317 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----------------YPPTYYHRG 317 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----------------CHHHHHHHH
Confidence 555555555555555 44455455555555555566666666666555544321 112455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
..+...|++++|++.+++..+. .| +...+..+...+...|++++|.+.++++.+. .|+ ...+..++..+...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhC
Confidence 5555666666666666665552 22 2345555555566666666666666665544 333 345555666666666
Q ss_pred ChHHHHHHHHhC-CCCC---C----cchHHHHHHHHHhc----------CCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 706 KLQEAYEFIKNL-PIQP---K----PGVWGAMLSACSHH----------GDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
++++|++.++++ ...| . ...+......+... |++++|...++++.+..|+++.++..++.+|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666666655554 1111 1 11122333344444 6666666666666666666666666666666
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
.+.|++++|++.+
T Consensus 473 ~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 473 LQMEKIDEAIELF 485 (537)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 6666666665543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=8e-19 Score=185.94 Aligned_cols=364 Identities=11% Similarity=0.035 Sum_probs=274.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 035828 401 NNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVI 478 (781)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 478 (781)
.+...+..+...+.+.|++++|..+|+++.. .| +...|..+...+...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 3566777888888888999999888887643 23 56778888888888899999999998888863 33456777788
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCChHHHHHHhhhcC---CCChhhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDT---RVQNAL------------ITMYGRCRDIKSASTVFESCY---NCNLCTW 540 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 540 (781)
..+...|++++|...++.+.+.... +. ..+..+ ...+.+.|++++|...|+.+. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8888888999999888888765321 22 444444 444888999999999998775 4466788
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-CCC-CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-EFE-PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
..+..+|...|++++|++.|+++ ... .+..++..+...+...|+++.|...++.+.+....... .+..+....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~---- 255 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR-CFAHYKQVK---- 255 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHH----
Confidence 89999999999999999999998 533 45778888899999999999999999998865432211 111110000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
....+..+...+...|++++|++.|+++.+ ..|+ ...+..+...+.+.|++++|...++++.+. .|+ ..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~ 330 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHH
Confidence 011233447888999999999999999998 4565 347888899999999999999999999865 564 68
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHH------------HHhcC-----CcHHHHHHHHH-Hhcc
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSA------------CSHHG-----DTKMGKQVAEL-LFKL 752 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~ 752 (781)
.|..++.+|...|++++|.+.++++ ...|+.. .+..+..+ +...| +.+++.+.+++ +.+.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987 6667644 45555422 22334 67788989987 6777
Q ss_pred CCCCCc----------hHHHHHHHHHhcCChhhHH
Q 035828 753 EPENVG----------YYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 753 ~p~~~~----------~~~~l~~~~~~~g~~~~A~ 777 (781)
.|+... .+..++.+|...|+.+++.
T Consensus 411 ~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 411 HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 776432 5667888899888877654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=6.4e-19 Score=191.47 Aligned_cols=432 Identities=9% Similarity=-0.007 Sum_probs=219.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISL 287 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~ 287 (781)
...+..+...+.+.|++++|.+.|+++. +.+..+|..+..++.+.|++++|++.|++..+.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 4556667777788888888888887765 3466778888888888888888888888888742 3346677777888
Q ss_pred HhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCC
Q 035828 288 CADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFS 367 (781)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 367 (781)
+...|+++.|...++ .......+ ....+..+...+....+...++.+.... |+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~----------------------~~ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKD----------------------EG 155 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------cc
Confidence 888888888888885 33222221 1222334445555677888887775500 00
Q ss_pred chhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCcc-cHHHHHHHH
Q 035828 368 FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-SDTS-CWNIVIVAC 445 (781)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~li~~~ 445 (781)
......|+. ..+..+....+.+.+...+...... +... ....+...+
T Consensus 156 ---------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 156 ---------------------------RGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp ------------------------------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred ---------------------------ccccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 000111221 1222233444444444444333111 1111 222222222
Q ss_pred HhC--------CChHHHHHHHHHHHHcCCCCCChh--------hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHH
Q 035828 446 TQN--------GHFQEAIKTFKSMTQQQNASPDSV--------TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQ 509 (781)
Q Consensus 446 ~~~--------~~~~~A~~~~~~m~~~~~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 509 (781)
... |++++|+.+|+++.+.. |+.. .+..+...+...|+++.|...+..+.+.. |+...+
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 279 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSY 279 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHH
Confidence 221 36777788888777643 4421 23333344455555555555555555432 224444
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCc
Q 035828 510 NALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGV 584 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~ 584 (781)
..+...+...|++++|...++.+. +.+..+|..+...+...|++++|+..|++. ...|+ ..
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 345 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY-------------- 345 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--------------
Confidence 455555555555555555555433 223344445555555555555555555544 22222 22
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA 664 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 664 (781)
+|..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 346 -------------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 346 -------------------------------------PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp -------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34444455555555555555555555421 1223345555555
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhc----------CChHHHHHHHHhC-CCCC-CcchHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRS----------GKLQEAYEFIKNL-PIQP-KPGVWGA 728 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ 728 (781)
+...|++++|.+.++++++.....+.. ..+..+...+.+. |++++|++.++++ ...| +...+..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555554431111111 1122333444444 5555555555554 2222 3344555
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+...+...|++++|...++++.++.|+++..
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 5555555555555555555555555555444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.6e-17 Score=166.60 Aligned_cols=307 Identities=9% Similarity=0.002 Sum_probs=205.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 035828 441 VIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCR 520 (781)
Q Consensus 441 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 520 (781)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 3334444444444444444444431 1223333334444444444444444444444332 113344455555555555
Q ss_pred ChHHHHHHhhhcCC--C----ChhhHHH------------HHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhc
Q 035828 521 DIKSASTVFESCYN--C----NLCTWNC------------MISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACT 580 (781)
Q Consensus 521 ~~~~A~~~~~~~~~--~----~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 580 (781)
++++|...++.... | +...+.. +...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55555555554432 1 1122222 256777888888888888888 4444 5566777777888
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVI 659 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~ 659 (781)
..|+++.|...++.+.+... + +..+|..+...+...|++++|.+.+++..+ ..|+. ..+.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~--~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 226 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKS--D---------------NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFA 226 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCS--C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--C---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHH
Confidence 88888888888888776532 2 223677888888999999999999999887 34443 2222
Q ss_pred ------------HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-----chHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 660 ------------SLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-----EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 660 ------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
.+...+...|++++|...++++.+. .|+. ..+..+...+.+.|++++|++.++++ ...|
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 2356688899999999999999876 4542 34556889999999999999999887 3344
Q ss_pred -CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 722 -KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 722 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
+...+..++..+...|++++|...++++.+++|+++.+...++.++...++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999998876543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=7.9e-17 Score=164.82 Aligned_cols=288 Identities=9% Similarity=0.007 Sum_probs=238.6
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHH
Q 035828 471 SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAF 547 (781)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 547 (781)
...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++|...++++. +.+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34556677778899999999999999988643 367888899999999999999999999876 34567899999999
Q ss_pred HhCCChhHHHHHHhhc-CCCC---CHhH-HHHH------------HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 548 SQNKAEVRALELFRHL-EFEP---NEIS-IVSI------------LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 548 ~~~~~~~~A~~~~~~~-~~~p---~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
...|++++|+..|++. ...| +... +..+ ...+...|+++.|...++.+.+....
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------- 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW--------- 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 9999999999999999 7788 5433 3333 36778899999999999999876542
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
+...+..+...+...|++++|++.++++.+. .+.+..++..+...+...|++++|.+.+++..+. .|+
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~ 220 (359)
T 3ieg_A 153 --------DAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 220 (359)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred --------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Ccc
Confidence 2236788888899999999999999999985 2346778999999999999999999999999866 555
Q ss_pred c-chHH------------HHHHHhhhcCChHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 691 T-EHHV------------CIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-----VWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 691 ~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
. ..+. .++..+.+.|++++|++.++++ ...|+.. .+..+...+...|++++|...++++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3222 3377799999999999999887 3445433 345577888999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 752 LEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 752 ~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|+++..+..++.+|...|++++|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 301 MEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999865
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-16 Score=161.59 Aligned_cols=290 Identities=10% Similarity=-0.016 Sum_probs=194.5
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..++..+.+... .+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 45556666777777777777777777777653 22233333344444555555555555555544321 1333444444
Q ss_pred HHHHhcC-ChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCC-HhHHHHHHHHhcccCchHHHHHH
Q 035828 514 TMYGRCR-DIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPN-EISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 514 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
..+...| ++++|...|+... ...|+ ...+..+...+...|+++.|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT------------------------------TLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH------------------------------TTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH------------------------------HhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 4444444 4444444444332 33332 33444444555555555555555
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcH
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLV 671 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 671 (781)
++.+.+..... ...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++
T Consensus 148 ~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 148 YFTAAQLMKGC-----------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHTTTC-----------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcccc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccH
Confidence 55555443221 1245567777888999999999999998742 33567888889999999999
Q ss_pred HHHHHHHHHhHHHcCC-------CCCcchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHH
Q 035828 672 DEGLQYYNNMLEEYDV-------RPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 742 (781)
++|...++++.+...- +.....+..++..|.+.|++++|++.++++ .. +.+...+..+...+...|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 9999999998775211 223578999999999999999999999887 33 34567889999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH-hcCChh
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYV-ALGRWK 774 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 774 (781)
...++++.++.|+++.++..++.++. ..|+.+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999984 556543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=4.7e-17 Score=167.11 Aligned_cols=292 Identities=16% Similarity=0.092 Sum_probs=190.8
Q ss_pred HHhcCCHHHHHH-HHHhhcCC----C--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc
Q 035828 413 YINCGDLVAAFS-LLQRISHN----S--DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485 (781)
Q Consensus 413 ~~~~~~~~~a~~-~~~~~~~~----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 485 (781)
+...|++++|.. .+++.... | +...+..+...+.+.|++++|+..|+++.+.. |+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~--------------- 96 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PK--------------- 96 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TT---------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---------------
Confidence 344466666666 55543211 1 24456666666677777777777777766642 22
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRH 562 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 562 (781)
+...+..+..+|.+.|++++|...|+++. +.+..+|..+...+...|++++|+..+++
T Consensus 97 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 97 -------------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444555555555555555555433 22344556666666666666666666666
Q ss_pred c-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 563 L-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 563 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
+ ...|+........ +.... ...+.. .+..+.. +...|++++|+.
T Consensus 158 ~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~-----------------~~~~~~~-~~~~~~~~~A~~ 202 (368)
T 1fch_A 158 WLRYTPAYAHLVTPA------EEGAG-----------GAGLGP-----------------SKRILGS-LLSDSLFLEVKE 202 (368)
T ss_dssp HHHTSTTTGGGCC-------------------------------------------------CTTHH-HHHHHHHHHHHH
T ss_pred HHHhCcCcHHHHHHH------HHHhh-----------hhcccH-----------------HHHHHHH-HhhcccHHHHHH
Confidence 6 3444322111000 00000 000000 1111222 237899999999
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 642 LFHEMCNSGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 642 ~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.++++.+. .|+ ..++..+...+...|++++|...++++++. .|+ ...+..++..+.+.|++++|++.++++
T Consensus 203 ~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 203 LFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999884 444 778999999999999999999999999865 565 578999999999999999999999987
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 718 -PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN-----------VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 718 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
...| +...+..+...+.+.|++++|...++++.++.|++ +.++..++.+|...|++++|..+++
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 3444 56688999999999999999999999999999887 7899999999999999999998753
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.6e-16 Score=158.80 Aligned_cols=257 Identities=11% Similarity=0.105 Sum_probs=213.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHH
Q 035828 503 GLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILS 577 (781)
Q Consensus 503 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 577 (781)
+.+...+..+...+...|++++|.++|+.+. +.+...+..++..+...|++++|+..++++ ...| +...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3455566677778888899999999888775 334456777788888999999999999998 5555 4566777778
Q ss_pred HhcccC-chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 578 ACTQLG-VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 578 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
.+...| +++.|...++...+.... +...|..+...+...|++++|++.++++.+.. +.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 160 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-----------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL 160 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-----------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH
Confidence 888889 999999999998875432 22368888899999999999999999998842 22456
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC----------CCCcc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI----------QPKPG 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~ 724 (781)
.+..+...+...|++++|.+.++++++ ..|+ ...+..++..+.+.|++++|++.++++ .. +....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 777788999999999999999999974 4665 588999999999999999999998876 11 33456
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..|+++.++..++.+|.+.|++++|++.+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999865
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=6.9e-16 Score=153.15 Aligned_cols=286 Identities=12% Similarity=0.110 Sum_probs=130.8
Q ss_pred hhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHH
Q 035828 18 SNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHC 97 (781)
Q Consensus 18 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 97 (781)
.+.|++++|.+++++.+.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++.+.|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 899999999999999999999975 3688899999999999999999999888
Q ss_pred HHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 98 LSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
...+. .+++.+.+.|+.+|.+.|++++++++++ .|+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4558889999999999999999999886 477789999999999999999999999987 479
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 035828 178 SSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 257 (781)
..+..++.+.|+++.|.+.+..+ .+ +.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~--~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NS--TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TC--HHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CC--chhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998877 23 8899999999999999999988877665 344445578899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGY------DLLMMNSLMDFYSKSNSLSK 331 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 331 (781)
+++|..+++.......-.-...|...++.+--+.+...+..+.|.. +-+++| +...|..+.-.|...++++.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999999876331222233333333333344555555554431 122232 45678888888888899988
Q ss_pred HHHHH
Q 035828 332 AELLF 336 (781)
Q Consensus 332 a~~~~ 336 (781)
|....
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.9e-14 Score=155.16 Aligned_cols=206 Identities=9% Similarity=0.018 Sum_probs=157.8
Q ss_pred hHHHHHHhhc-CCCC-CHhHHHHHHHHhcc-------cCchH-------HHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 554 VRALELFRHL-EFEP-NEISIVSILSACTQ-------LGVLR-------HGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 554 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
.+++.+|++. ...| +...|..+...+.. .|+++ .|..+++...+. +.|+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~-------------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK-------------- 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS--------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc--------------
Confidence 3677788887 5444 45556656555553 68876 788888887652 2333
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+...|..++..+.+.|++++|.++|+++.+ +.|+. ..|..++..+.+.|+.++|.++|++.++. .|. ...|
T Consensus 320 -~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~ 393 (530)
T 2ooe_A 320 -NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 393 (530)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHH
Confidence 223688888889999999999999999998 56653 47888888888999999999999999743 554 3444
Q ss_pred HHHHHH-hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc----hHHHHHHHH
Q 035828 695 VCIVDM-LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG----YYISLSNMY 767 (781)
Q Consensus 695 ~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~ 767 (781)
...+.. +...|++++|..++++. ...| +...|..++..+.+.|+.+.|..++++++...|.+|. .+...+...
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 433333 34689999999999976 3344 5678999999999999999999999999999877766 677778888
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|+.+++.++.
T Consensus 474 ~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 474 SNIGDLASILKVE 486 (530)
T ss_dssp HHSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 8899999998764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.4e-16 Score=163.26 Aligned_cols=265 Identities=15% Similarity=0.080 Sum_probs=185.4
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...|..+...+.+.|++++|+..|+++.+.. |+ +...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~----------------------------------~~~~~~~lg 106 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PG----------------------------------DAEAWQFLG 106 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----------------------------------CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cC----------------------------------CHHHHHHHH
Confidence 34457777777777777777777777777643 32 333445555
Q ss_pred HHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGK 589 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 589 (781)
.+|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++ ...|+.......+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------ 174 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK------------ 174 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc------------
Confidence 55555666666666555443 223445666666666666666666666665 34443221100000
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhc
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP---TKSSVISLLSACS 666 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~ 666 (781)
.....+..+...+...|++++|++.++++.+. .| +..++..+...+.
T Consensus 175 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 175 ----------------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHH
T ss_pred ----------------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHH
Confidence 00113455667788899999999999999884 44 5778999999999
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|++++|.+.++++++. .|+ ..+|..++.+|.+.|++++|++.++++ ...| +...+..+...+...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999866 555 688999999999999999999999887 4445 4668899999999999999999
Q ss_pred HHHHHHhccCCC------------CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 744 QVAELLFKLEPE------------NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 744 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++++.++.|+ +...+..|+.++...|+.+.|.++.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999877 4678999999999999999998764
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.7e-14 Score=153.68 Aligned_cols=332 Identities=11% Similarity=0.012 Sum_probs=220.3
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCChhhHHH
Q 035828 405 GVNALMHMYIN----CGDLVAAFSLLQRISHNSDTSCWNIVIVACTQ----NGHFQEAIKTFKSMTQQQNASPDSVTLVN 476 (781)
Q Consensus 405 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ 476 (781)
.+..|-..|.. .++.++|...|++.....+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 152 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 34444444555 56666666666665444455555556666665 566777777777666554 2333444
Q ss_pred HHHHhcC----ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHhhhcC-CCChhhHHHHHHHH
Q 035828 477 VISACGN----LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGR----CRDIKSASTVFESCY-NCNLCTWNCMISAF 547 (781)
Q Consensus 477 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~ 547 (781)
+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++.. ..+...+..+...|
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 229 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444433 566777777777666654 45566666666666 677777777777654 33445666666666
Q ss_pred Hh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 548 SQ----NKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 548 ~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
.. .+++++|+.+|++. .. .+...+..+-..+.. .++.+.|...++...+.|.
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~------------------ 290 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN------------------ 290 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC------------------
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC------------------
Confidence 65 67778888888777 32 223333334444443 6788888888887766542
Q ss_pred ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC
Q 035828 619 SNAAWSSMISAYGYH-----GKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 619 ~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~ 690 (781)
..++..+...|... +++++|+.+|++..+.| +...+..+...+...| +.++|.+++++..+. .+
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~ 362 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE 362 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC
Confidence 11455556666665 88999999999988764 3456666666666545 788999999988654 34
Q ss_pred cchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCC---CCch
Q 035828 691 TEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPE---NVGY 759 (781)
Q Consensus 691 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~ 759 (781)
+..+..|...|.. .+++++|++++++.....++..+..+...+.. .+|+++|..+++++.+.+|+ ++.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a 442 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENR 442 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHH
Confidence 6778888888888 78999999998877333456677888888877 78999999999999998844 7777
Q ss_pred HHHHHHHHHhc
Q 035828 760 YISLSNMYVAL 770 (781)
Q Consensus 760 ~~~l~~~~~~~ 770 (781)
...|+.++...
T Consensus 443 ~~~l~~~~~~~ 453 (490)
T 2xm6_A 443 NITEKKLTAKQ 453 (490)
T ss_dssp HHHHTTSCHHH
T ss_pred HHHHHhcCHhH
Confidence 77777776543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.1e-15 Score=147.45 Aligned_cols=268 Identities=7% Similarity=-0.047 Sum_probs=202.1
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLD--TRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRA 556 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 556 (781)
+.....|++..|....+.... ..|+ ......+.++|...|+++.|+..++....++..++..+...+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344556888888877765533 2333 234456778999999999999988876566667888888899999999999
Q ss_pred HHHHhhc--C-CCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 557 LELFRHL--E-FEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 557 ~~~~~~~--~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
++.++++ . ..|+... +..+-..+...|++++|.+.++. |+ +..++..++..+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~---------------~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD---------------SLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC---------------CHHHHHHHHHHHHH
Confidence 9999987 3 4686544 44455678899999999999876 22 23367788888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVI---SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
.|++++|.+.|+++.+. .|+..... .++..+...|++++|..+|+++.+. .+.++..+..++.++.+.|++++
T Consensus 143 ~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999884 46643221 2233344568999999999999876 23346788899999999999999
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 710 AYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKM-GKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 710 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
|.+.++++ ...| ++.++..++..+...|+.++ +.++++++.+++|+++.+. ....+.+.+++|..
T Consensus 219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999886 4445 55678888888888998876 5789999999999998654 45667777777754
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=8.5e-14 Score=148.36 Aligned_cols=344 Identities=12% Similarity=0.080 Sum_probs=274.6
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCChh
Q 035828 401 NNTIGVNALMHMYIN----CGDLVAAFSLLQRISHNSDTSCWNIVIVACTQ----NGHFQEAIKTFKSMTQQQNASPDSV 472 (781)
Q Consensus 401 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~ 472 (781)
.+...+..+-..|.. .+++++|...|++.....+...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 356667777777777 89999999999987666677888888889988 899999999999998865 444
Q ss_pred hHHHHHHHhcC----ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHhhhcC-CCChhhHHHH
Q 035828 473 TLVNVISACGN----LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGR----CRDIKSASTVFESCY-NCNLCTWNCM 543 (781)
Q Consensus 473 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l 543 (781)
.+..+-..+.. .+++++|...++...+.| +...+..|...|.. .++.++|.+.|++.. ..+...+..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555556655 789999999999998876 56677778888887 789999999998766 4466788888
Q ss_pred HHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 544 ISAFSQ----NKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 544 ~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
...|.. .++.++|+..|++. .. .+...+..+-..+.. .++.+.|...++...+.|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------- 255 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS------------- 255 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH-------------
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH-------------
Confidence 888888 89999999999998 32 234455555555553 78999999999998876532
Q ss_pred hcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhHHHc
Q 035828 615 SNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS-----GLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 685 (781)
.++..+...|.. .++.++|+++|++..+.| +...+..+...+... ++.++|..++++..+.
T Consensus 256 ------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~- 325 (490)
T 2xm6_A 256 ------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ- 325 (490)
T ss_dssp ------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-
T ss_pred ------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-
Confidence 134555556666 899999999999998764 445666677777665 8999999999998754
Q ss_pred CCCCCcchHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCc
Q 035828 686 DVRPETEHHVCIVDMLGRSG---KLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 686 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+ +...+..+...|.+.| ++++|++++++.....++..+..+...+.. .+++++|..+++++.+.+ ++.
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~ 400 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA 400 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH
Confidence 2 3467788888888766 889999999987433567788889888888 899999999999998864 688
Q ss_pred hHHHHHHHHHh----cCChhhHHhhc
Q 035828 759 YYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
++..|+.+|.. .++.++|.+.+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999999999 89999998765
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=4.5e-15 Score=147.39 Aligned_cols=351 Identities=16% Similarity=0.122 Sum_probs=149.0
Q ss_pred hcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHH
Q 035828 223 QCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHG 302 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 302 (781)
+.|++++|.++++++..|+ +|+.+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996654 899999999999999999999964 2567789999999999999999999777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCc
Q 035828 303 YAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPE 382 (781)
Q Consensus 303 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 382 (781)
...+. .+++.+.+.|+.+|.+.|+++++.++++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------------------------------------------- 118 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN--------------------------------------------- 118 (449)
T ss_dssp -------------------------CHHHHTTTTT---------------------------------------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------------------------------------------
Confidence 66664 4457788889999999999988776553
Q ss_pred chhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 035828 383 SLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMT 462 (781)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 462 (781)
.|+..+|..+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 119 -----------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 119 -----------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA- 174 (449)
T ss_dssp -----------------CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred -----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 244557778888888889999999999877 47999999999999999999999877
Q ss_pred HcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhh
Q 035828 463 QQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCT 539 (781)
Q Consensus 463 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 539 (781)
.+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++|..+++.... .....
T Consensus 175 ------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ 243 (449)
T 1b89_A 175 ------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 243 (449)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred ------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence 2567888888888888888888444332 222333344577777777777777777776552 23345
Q ss_pred HHHHHHHHHhCC--ChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 540 WNCMISAFSQNK--AEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 540 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
|+-+.-+|++-+ +..+.+++|..- -+ ..-++++|.
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~---in---i~k~~~~~~------------------------------------- 280 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSR---VN---IPKVLRAAE------------------------------------- 280 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTT---SC---HHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH---hc---CcHHHHHHH-------------------------------------
Confidence 666655555542 233333333211 11 111233332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCI 697 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 697 (781)
+...|..++-.|...++++.|..+ |.+ ..|+..--..+.....+..+.+--.+...=-++. .|. ..+.|
T Consensus 281 -~~~~w~e~~~ly~~~~e~d~A~~t---m~~--h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~--~l~~l 349 (449)
T 1b89_A 281 -QAHLWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDL 349 (449)
T ss_dssp -TTTCHHHHHHHHHHTTCHHHHHHH---HHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHH
T ss_pred -HHHHHHHHHHHHHhhchHHHHHHH---HHh--CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHH--HHHHH
Confidence 334788888889999999988874 444 3445444444444445555544332222222222 343 35666
Q ss_pred HHHhhhcCChHHHHHHHHhCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~ 718 (781)
+.++...=+..++.+++++.+
T Consensus 350 l~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 350 LMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHhccCcHHHHHHHHHcC
Confidence 666666667777777776664
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=1.9e-15 Score=147.87 Aligned_cols=235 Identities=10% Similarity=0.020 Sum_probs=131.4
Q ss_pred HHhcCChHHHHHHhhhcCCCCh----hhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCNL----CTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
....|++..|+..++.....++ ...-.+..+|...|+++.|+..++.. ..|+..++..+...+...++.+.|.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3445666666666655543322 13334455666666666666544432 333445555555566666666666666
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcH
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLV 671 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 671 (781)
++.+...+..|+... .+..+...+...|++++|++.+++ ..+...+..++..+.+.|++
T Consensus 88 l~~ll~~~~~P~~~~---------------~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 88 LDREMSRSVDVTNTT---------------FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHSCCCCSCHH---------------HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 666665554444221 344445555666666666666655 23445566666666666666
Q ss_pred HHHHHHHHHhHHHcCCCCCcch---HHHHHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHH
Q 035828 672 DEGLQYYNNMLEEYDVRPETEH---HVCIVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 746 (781)
++|.+.++++.+. .|+... ...++..+...|++++|..+++++ ..+++...++.+..++.+.|++++|+..+
T Consensus 147 ~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666544 344211 112223333446666666666655 22334445666666666666666666666
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 747 ELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 747 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
+++++++|+++.++.+++.++...|+.++
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 66666666666666666666666666654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=8.5e-14 Score=149.99 Aligned_cols=211 Identities=10% Similarity=0.095 Sum_probs=159.5
Q ss_pred HHHHHhhhcC---CCChhhHHHHHHHHHh-------CCChh-------HHHHHHhhc-C-CCCC-HhHHHHHHHHhcccC
Q 035828 524 SASTVFESCY---NCNLCTWNCMISAFSQ-------NKAEV-------RALELFRHL-E-FEPN-EISIVSILSACTQLG 583 (781)
Q Consensus 524 ~A~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~-~-~~p~-~~~~~~ll~~~~~~~ 583 (781)
.+..+|++.. ..+...|......+.+ .|+++ +|..+|++. . ..|+ ...+..+...+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 5556666554 3355677777777765 68876 888999888 5 6775 566777777888889
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLL 662 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 662 (781)
+++.|..+++.+++. .|+.. ...|..++..+.+.|+.++|.++|++..+. .|+ ...|....
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 999999999998874 33211 125777888888899999999999999874 333 23333222
Q ss_pred HH-hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--cchHHHHHHHHH
Q 035828 663 SA-CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK--PGVWGAMLSACS 734 (781)
Q Consensus 663 ~~-~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~ 734 (781)
.. +...|+.++|..+|++.++. .|+ +..|..++..+.+.|+.++|..+++++ . ..|+ ...|...+....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 22 33589999999999999876 465 588899999999999999999999987 2 2332 237888888888
Q ss_pred hcCCcHHHHHHHHHHhccCCC
Q 035828 735 HHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~ 755 (781)
..|+.+.+..+.+++.+..|+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHH
T ss_pred HcCCHHHHHHHHHHHHHHCch
Confidence 899999999999999999885
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.2e-15 Score=151.78 Aligned_cols=263 Identities=12% Similarity=0.023 Sum_probs=177.3
Q ss_pred HHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch
Q 035828 511 ALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVL 585 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 585 (781)
.+...+...|++++|..+|+++. +.+...|..+..++...|++++|+..++++ ...| +..++..+...+...|++
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 33444445555555555554443 223344555555555555555555555555 3333 344455555555566666
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH-HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM-IS-AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+.|...++.+.+........ +..+.... ++......+ .. .+...|++++|++.++++.+.. +.+...+..+..
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQL-GSVNLQAD---VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHH-HHHHhHHH---HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 66666666555433221111 00000000 000001111 11 2667899999999999998842 336778999999
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
.+...|++++|.+.++++.+. .|+ ...+..++..+...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999866 555 578999999999999999999999887 3344 5668889999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 741 MGKQVAELLFKLEPE------------NVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+|...++++.+..|+ ++..+..++.+|.+.|++++|.++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999 78899999999999999999998763
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.5e-15 Score=155.55 Aligned_cols=226 Identities=9% Similarity=0.056 Sum_probs=184.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHh
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDM 613 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 613 (781)
+...|..+...+.+.|++++|+..|+++ ...| +..++..+...+...|+++.|...++.+.+... +
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---------- 131 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP--N---------- 131 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C----------
Confidence 3456888888999999999999999998 5445 567888888889999999999999999887643 2
Q ss_pred hhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 614 YSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-----------SVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 614 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
+..+|..+...|...|++++|++.++++.+ ..|+.. .+..+...+...|++++|.+++++++
T Consensus 132 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 132 -----NLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 233688889999999999999999999987 344422 23345778889999999999999998
Q ss_pred HHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 683 EEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 683 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+.....++...+..++..|.+.|++++|++.++++ ...| +...|..++..+...|++++|...++++++..|+++.++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 77222224678999999999999999999999987 3334 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|...|++++|++.+
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999875
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=174.53 Aligned_cols=146 Identities=5% Similarity=-0.039 Sum_probs=127.7
Q ss_pred ccchhHHHHHhhcCCchhHHHHhhhh-------cCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHH
Q 035828 8 PTSTSLLTAYSNVSYFESSLALFYET-------CNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIV 80 (781)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 80 (781)
.|||+||.+|++.|++++|.++|++| ..||+.|||+||++||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 58999999999999999999999764 47999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcc-cchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCC-----CCeeehHHHHHHHhhCC
Q 035828 81 SALTQMNCL-KQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHC-----ADTVSWNTIMSGCLHNN 153 (781)
Q Consensus 81 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g 153 (781)
.++|+.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.+++..+.. |...+.+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999988887777777777665542 22445566666777655
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.64 E-value=6.9e-15 Score=150.90 Aligned_cols=246 Identities=12% Similarity=0.094 Sum_probs=190.1
Q ss_pred HHhcCChHHHHH-HhhhcC---CC----ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch
Q 035828 516 YGRCRDIKSAST-VFESCY---NC----NLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVL 585 (781)
Q Consensus 516 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 585 (781)
+...|++++|.+ .+++.. +. +...+..+...+...|++++|+..|+++ ...| +...+..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578888887 777543 21 2356788888999999999999999998 5555 566778888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHH----
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-SVIS---- 660 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~---- 660 (781)
+.|...++.+.+.... +..+|..+...+...|++++|++.++++.+. .|+.. .+..
T Consensus 115 ~~A~~~~~~al~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 115 LLAISALRRCLELKPD-----------------NQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC-----
T ss_pred HHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 9999999998876532 2336888888899999999999999999984 34332 2211
Q ss_pred -----------HHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHH
Q 035828 661 -----------LLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWG 727 (781)
Q Consensus 661 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 727 (781)
.+..+...|++++|...++++.+.....++..++..++..|.+.|++++|++.++++ ...| +...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 255 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 233344889999999999999876222223678899999999999999999999887 3344 466889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.++..+...|++++|...++++.++.|+++..+..++.+|.+.|++++|++.+
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=170.51 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMT-------CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVT 283 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ 283 (781)
..+||+||++||+.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.| +.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 6799999999999999999999997753 6899999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcccch-hhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 035828 284 LISLCADSLLL-REGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELL 335 (781)
Q Consensus 284 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 335 (781)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999999877765444444433
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.4e-14 Score=145.79 Aligned_cols=279 Identities=9% Similarity=-0.050 Sum_probs=189.6
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 44566777888888999999999999988753 2244455555555666666666666666555442 12344444444
Q ss_pred HHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHH--HhcccCchHHH
Q 035828 514 TMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILS--ACTQLGVLRHG 588 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a 588 (781)
..|...|++++|...++.+...+ ...+..+.. ..|+......+.. .+...|+++.|
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ-------------------ADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------CCTTSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH-------------------HHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 45555555555554444332111 011111100 0111111111113 37788999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 035828 589 KQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS 668 (781)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 668 (781)
...++.+.+.... +...+..+...+...|++++|++.++++.+.. +.+..++..+...+...
T Consensus 158 ~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 158 RTLLHAALEMNPN-----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC-----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 9999998876543 22367888888999999999999999998742 33567899999999999
Q ss_pred CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-------------CcchHHHHHHHH
Q 035828 669 GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-------------KPGVWGAMLSAC 733 (781)
Q Consensus 669 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~ 733 (781)
|++++|.+.++++.+. .|+ ...+..++..|.+.|++++|.+.++++ ...| +...+..+...+
T Consensus 220 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 220 NRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 9999999999999865 555 578999999999999999999999876 2333 356788899999
Q ss_pred HhcCCcHHHHHHHHHHhccCCC
Q 035828 734 SHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
...|+.++|...++++++..|+
T Consensus 297 ~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHTTCHHHHHHHTTCCSHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999887776554
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2e-14 Score=134.20 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=122.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhccc-----------CcHHHHHHHHHHhHHHcCCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHS-----------GLVDEGLQYYNNMLEEYDVRP 689 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p 689 (781)
+|..+...+...|++++|+..+++..+ ..| +...+..+..++... |++++|...+++.++. .|
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P 115 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NP 115 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---Cc
Confidence 566667777788888888888888877 455 445777777778778 9999999999999865 77
Q ss_pred C-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 690 E-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 690 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
+ ...+..+..+|...|++++|++.++++ ....++..+..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6 578899999999999999999999887 22266778899999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHhhcC
Q 035828 768 VALGRWKDAVEIGK 781 (781)
Q Consensus 768 ~~~g~~~~A~~l~~ 781 (781)
...|++++|++.++
T Consensus 196 ~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 196 LLKGKAEEAARAAA 209 (217)
T ss_dssp TC------------
T ss_pred HHccCHHHHHHHHH
Confidence 99999999988653
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.9e-13 Score=143.95 Aligned_cols=348 Identities=10% Similarity=-0.020 Sum_probs=182.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC----------CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISH----------NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ----- 465 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----- 465 (781)
....||.|-..+...|+.++|++.|++... .| ...+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456677777777788888888777765311 12 23467777777777888888877777765421
Q ss_pred CCCCC-hhhHHHHHHHh--cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH---HHhcCChHHHHHHhhhcC---CCC
Q 035828 466 NASPD-SVTLVNVISAC--GNLELAFEGKSLHGLALKSLMGLDTRVQNALITM---YGRCRDIKSASTVFESCY---NCN 536 (781)
Q Consensus 466 ~~~p~-~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~ 536 (781)
...++ ..++...-.++ ...+++++|...|+...+.... ++..+..+..+ +...++.++|++.+++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 01111 22333322222 2334667777777766654321 23333333333 233455556666655433 223
Q ss_pred hhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 537 LCTWNCMISAFSQ----NKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 537 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
...+..+...+.. .++.++|.+.+++. ...| +...+..+...+...|+++.|...++...+....
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------- 279 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--------- 279 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---------
Confidence 3344444333332 34556666666665 4333 3445555666666666666666666666554322
Q ss_pred HHhhhcCCChhhHHHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCc
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYH-------------------GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGL 670 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~ 670 (781)
+..+|..+...|... +.+++|+..+++..+ ..| +..++..+...+...|+
T Consensus 280 --------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 280 --------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTC
T ss_pred --------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhcc
Confidence 112344444444321 123455555555554 223 23355556666666666
Q ss_pred HHHHHHHHHHhHHHcCCCCCc----chHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPET----EHHVCIVDM-LGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
+++|.+.|++.++. .|+. ..+..+... +...|++++|++.+++. .+.|+....... .+.+.+
T Consensus 350 ~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHH
Confidence 66666666666543 2321 122222222 23456666666666554 344544322222 233445
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 745 VAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 745 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
++++.++.+|+++.++..||.+|...|++++|++.++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566667789999999999999999999999998763
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.4e-12 Score=138.63 Aligned_cols=302 Identities=11% Similarity=-0.005 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHhhcC-CCC-cccHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHh----cCccc
Q 035828 417 GDLVAAFSLLQRISH-NSD-TSCWNIVIVA---CTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISAC----GNLEL 486 (781)
Q Consensus 417 ~~~~~a~~~~~~~~~-~~~-~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~----~~~~~ 486 (781)
+++++|...|++... .|+ +..+..+... +...++.++|++.|++..+.. |+. ..+..+...+ ...++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHHHHHHHHHHHHHhhhhH
Confidence 456677777765422 232 3333333322 334556666666666666532 332 2222222222 23345
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 487 AFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.+.|...++...... +.+...+..+...|.+.|++++|...+++.. +.+..++..+..+|...+....+ ..
T Consensus 229 ~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~-----~~ 302 (472)
T 4g1t_A 229 EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN-----LR 302 (472)
T ss_dssp -CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-----C-
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh-----HH
Confidence 555666555554433 2234445555555556666666665555443 12223343333333211100000 00
Q ss_pred CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 035828 564 EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELF 643 (781)
Q Consensus 564 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 643 (781)
... ........+..+.|...++...+.... +..+|..+...+...|++++|++.|
T Consensus 303 --~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 303 --ENG------MYGKRKLLELIGHAVAHLKKADEANDN-----------------LFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHCTT-----------------TCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-----------------hhhhhhhHHHHHHHhccHHHHHHHH
Confidence 000 000001112356667777766665432 2236788889999999999999999
Q ss_pred HHHHhCCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C-
Q 035828 644 HEMCNSGIRPTKS--SVISLLS-ACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P- 718 (781)
Q Consensus 644 ~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 718 (781)
++..+....|... .+..+.. .....|+.++|++.+++.++ +.|+....... ...+.+++++. .
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHh
Confidence 9998854333221 2233322 23467899999999999874 46765332222 22333444433 2
Q ss_pred CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 719 IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.+.++.+|..++..+...|++++|++.++++++++|.+|.+...+|
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2446778999999999999999999999999999999998887766
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-13 Score=132.93 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=167.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC--CCchHHHHHHHhhh
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ--ENSFISSALLDMYS 615 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 615 (781)
.|..+...+...|++++|+..|++. ...++...+..+..++...|+++.|...++...+.... ++...
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--------- 77 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV--------- 77 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH---------
Confidence 4455555666666666666666666 21155566666666666777777777777666553221 11100
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
...+|..+...+...|++++|++.|++..+ ..|+.. .+...|++++|.+.++++.+. .|+ ...+
T Consensus 78 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 142 (258)
T 3uq3_A 78 ---ISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEA 142 (258)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHH
Confidence 023678888999999999999999999998 556643 455568899999999998753 665 5788
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..++..+...|++++|++.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999887 33 34566788999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
+++|.+.+
T Consensus 223 ~~~A~~~~ 230 (258)
T 3uq3_A 223 YASALETL 230 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.9e-13 Score=131.31 Aligned_cols=150 Identities=12% Similarity=-0.049 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
+|..+...+...|++++|++.++++.+ ..|+.......+..+...|++++|...+++.... .|+......++..+
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFY 187 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCcchHHHHHHHHH
Confidence 577778888889999999999999987 4566555555555566779999999999888765 34433334477778
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 702 GRSGKLQEAYEFIKNL-PIQPK-----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
...++.++|++.+++. ...|+ ...+..++..+...|++++|...++++.+.+|++...+ +.++...|++++
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~ 264 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQ 264 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHh
Confidence 8888899999988876 33332 46788889999999999999999999999999876544 778888899999
Q ss_pred HHhh
Q 035828 776 AVEI 779 (781)
Q Consensus 776 A~~l 779 (781)
|++-
T Consensus 265 a~~~ 268 (275)
T 1xnf_A 265 DQDD 268 (275)
T ss_dssp C---
T ss_pred hHHH
Confidence 8764
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.5e-13 Score=128.29 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
...|++++|+..++++.. ..| +...+..+...+...|++++|...++++++. .|+ ...+..++..|.+.|+++
T Consensus 116 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHH
Confidence 445677788888887776 344 3446777777788888888888888888765 444 577888888888888888
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 035828 709 EAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNM 766 (781)
Q Consensus 709 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 766 (781)
+|++.++++ ...| +...+..+...+...|++++|...++++.++. |++..++..+..+
T Consensus 191 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 888888776 3334 45677888888888899999999999998888 8777777766654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=9.3e-13 Score=128.37 Aligned_cols=241 Identities=10% Similarity=-0.063 Sum_probs=174.9
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC----HhHHHHHHHHhcc
Q 035828 510 NALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN----EISIVSILSACTQ 581 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~ 581 (781)
......+...|++++|...|+... +.+...|..+..++...|++++|+..+++. ...++ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344556667777777777777654 233456777777777778888888777777 31122 2236667777778
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVIS 660 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ 660 (781)
.|+++.|...++...+.... +..+|..+...+...|++++|++.+++..+. .| +...+..
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 147 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-----------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYE 147 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHH
Confidence 88888888888887775432 2236888888999999999999999999874 45 4556766
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCCc------chH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK---LQEAYEFIKNL----PIQPKP------GVW 726 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~ 726 (781)
+...+...+++++|.+.++++++. .|+ ...+..+...+...|+ +++|+..++++ ...|+. ..+
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 663455556999999999999866 666 5778888888888888 88888887766 222442 467
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+...+...|++++|...++++++++|+++.+...++......+.
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 7788888999999999999999999999999999998887765543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.1e-12 Score=130.51 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCC-hhHHHHHHhhc-CCCC-CHhHHHHHHHHh
Q 035828 506 TRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKA-EVRALELFRHL-EFEP-NEISIVSILSAC 579 (781)
Q Consensus 506 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 579 (781)
...+..+...+.+.|++++|+..++.+. ..+...|+.+..++...|+ +++|+..|++. ...| +...|..+-.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445556667777888888888887665 3345678888888888886 88888888888 6666 456677777777
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
...|++++|...++.+++.... +..+|..+...+...|++++|++.++++.+ +.| +...|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-----------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~ 237 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-----------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVW 237 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHH
Confidence 8888888888888888775542 334788888899999999999999999998 455 56688
Q ss_pred HHHHHHhcc-cCcHHHH-----HHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC--ChHHHHHHHHhCCCCCC-cchHHH
Q 035828 659 ISLLSACSH-SGLVDEG-----LQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG--KLQEAYEFIKNLPIQPK-PGVWGA 728 (781)
Q Consensus 659 ~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ 728 (781)
+.+..++.. .|..++| ++.+++.++. .|+ ...|..+..+|.+.| ++++|++.+.++...|+ ...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHH
Confidence 888888888 6665777 5888888765 776 578889999999888 69999999888755554 456788
Q ss_pred HHHHHHhcC--------C-cHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 035828 729 MLSACSHHG--------D-TKMGKQVAELL-FKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 729 l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++..+.+.| + .++|+.+++++ .+++|.....|..++..+..+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 888887764 3 58999999999 999999999999999887654
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.8e-12 Score=123.91 Aligned_cols=213 Identities=13% Similarity=0.089 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|...++.+.+....
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------- 89 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS--------------- 89 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---------------
Confidence 4445555566666666666666666 4444 4555666666667777777777777776665322
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHV 695 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 695 (781)
+..+|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+ ...+.
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 163 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARF 163 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHH
Confidence 22257778888889999999999999998742 336678888889999999999999999999865 454 67888
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
.++..+.+.|++++|++.++++ ...| +...+..+...+...|++++|...++++.+..|+++.++..++.+....|+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999999999999999999887 3333 466788899999999999999999999999999999999988887766554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=9.7e-12 Score=119.50 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
..|..+...+...|++++|+..|+++ ...| +...+..+...+...|++++|.+.++.+.+....
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 103 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-------------- 103 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------
Confidence 35566666777777777777777776 4333 4556666777777778888888888777765432
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
+...|..+...+...|++++|+++++++.+.+..| +...+..+...+...|++++|.+.++++.+. .|+ ...
T Consensus 104 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 177 (252)
T 2ho1_A 104 ---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSV 177 (252)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHH
T ss_pred ---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHH
Confidence 22257778888889999999999999998744455 4557888888899999999999999998865 454 578
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
+..++..+...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+++.....
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 889999999999999999999887 4444 45567778888889999999999999999999998876544
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=1.2e-11 Score=129.49 Aligned_cols=345 Identities=9% Similarity=0.029 Sum_probs=219.7
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhhcCCCCcccHHHHHHHHHhCC-----Ch
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL---VAAFSLLQRISHNSDTSCWNIVIVACTQNG-----HF 451 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~ 451 (781)
..|++++|.+.+....+.|. ...+..|-..|...|+. ++|...|++.... ++..+..+...+...+ ++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 45899999999999988763 33344455556667777 8999999888544 7777777777565555 77
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccch---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh----HH
Q 035828 452 QEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELA---FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDI----KS 524 (781)
Q Consensus 452 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~ 524 (781)
++|+..|++..+.| . |+ .+..+-..|...+.. ..+...+......| +......|...|...+.+ +.
T Consensus 91 ~~A~~~~~~Aa~~g-~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 91 HEAESLLKKAFANG-E-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHTT-C-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHCC-C-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 89999999998876 2 22 444444455444443 33444455544454 355566677777777744 44
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhCC---ChhHHHHHHhhc-C-CCCCHhHHHHHHHHhccc----CchHHHHHHHHHH
Q 035828 525 ASTVFESCYNCNLCTWNCMISAFSQNK---AEVRALELFRHL-E-FEPNEISIVSILSACTQL----GVLRHGKQIHGHV 595 (781)
Q Consensus 525 A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~ 595 (781)
+..+++.....++..+..+...|...| +.++|++.|++. . -.++...+..+-..+... ++.+.|...|+..
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 555666666667778888999999999 899999999998 4 444555444555555443 6889999999887
Q ss_pred HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---
Q 035828 596 FHLGFQENSFISSALLDMYSNCKSNAAWSSMISA-Y--GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG--- 669 (781)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--- 669 (781)
. .|. +.++..+... + ...+++++|+++|++..+.| +...+..|...|. .|
T Consensus 244 a-~g~-------------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 244 A-PGY-------------------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp G-GGS-------------------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred c-CCC-------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 6 322 2245555555 3 45889999999999998876 5566666666665 44
Q ss_pred --cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCc
Q 035828 670 --LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDT 739 (781)
Q Consensus 670 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 739 (781)
+.++|.++|++.. .-++..+..|...|.. ..++++|.+++++.....+......+...+.. ..|.
T Consensus 300 ~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999998874 2245677778877766 44899999999887444455667777776654 4589
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
++|..+++++.+.++.+ +...+..+
T Consensus 375 ~~A~~~~~~A~~~g~~~--a~~~l~~l 399 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPE--ANDLATQL 399 (452)
T ss_dssp HHHHHHHHHHHTTCCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH--HHHHHHHH
Confidence 99999999998877543 33344443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=3.3e-12 Score=128.96 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCc-hHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGV-LRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
..|..+...+...|++++|+..|++. .+.|+ ...|..+-.++...|+ +++|...++.+++....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------- 164 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------- 164 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------------
Confidence 47888888999999999999999999 77785 5677778888889996 99999999999886653
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
+..+|+.+...+...|++++|+..|+++.+ +.| +...|..+..++...|++++|+..++++++. .|+ ..
T Consensus 165 ----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~ 235 (382)
T 2h6f_A 165 ----NYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNS 235 (382)
T ss_dssp ----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHH
T ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH
Confidence 334788888999999999999999999998 566 5678999999999999999999999999866 776 58
Q ss_pred hHHHHHHHhhh-cCChHHH-----HHHHHhC-CCCCC-cchHHHHHHHHHhcC--CcHHHHHHHHHHhccCCCCCchHHH
Q 035828 693 HHVCIVDMLGR-SGKLQEA-----YEFIKNL-PIQPK-PGVWGAMLSACSHHG--DTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 693 ~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.|..+..+|.+ .|..++| ++.++++ ...|+ ...|..+...+...| ++++|...++++ +.+|+++.++..
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~ 314 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHH
Confidence 89999999999 6666888 4667665 45564 557888888888888 799999999999 889999999999
Q ss_pred HHHHHHhcC--------C-hhhHHhhc
Q 035828 763 LSNMYVALG--------R-WKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g--------~-~~~A~~l~ 780 (781)
|+++|.+.| + .++|++++
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHH
Confidence 999999975 2 58888765
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.2e-12 Score=115.97 Aligned_cols=157 Identities=12% Similarity=0.126 Sum_probs=139.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
++..|..+...|...|++++|++.|++..+ +.| +..++..+..++...|++++|...++..... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 345788999999999999999999999998 456 5568899999999999999999999999765 565 577888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|+++.++..+|.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999999877 3444 45678888999999999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 159 ~A~~~~ 164 (184)
T 3vtx_A 159 EAVKYF 164 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.4e-12 Score=134.43 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=172.7
Q ss_pred hhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch-HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHH
Q 035828 553 EVRALELFRHL-EFEP-NEISIVSILSACTQLGVL-RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISA 629 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 629 (781)
.++++..+++. ...| +...+..+-..+...|++ ++|...++...+.... +..+|..+...
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~ 146 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----------------LVEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----------------CHHHHHHHHHH
Confidence 44555556555 4444 556666667777788888 8888888887765432 23368888999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc---------CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS---------GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
|...|++++|++.|++..+ ..|+...+..+...+... |++++|.+.+++.++. .|+ ...|..+..
T Consensus 147 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 221 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGN 221 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999999999999999998 568888999999999999 9999999999999865 666 588999999
Q ss_pred Hhhhc--------CChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 700 MLGRS--------GKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 700 ~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+|... |++++|++.++++ ...| +...|..+...+...|++++|...++++.+++|+++.++..++.+
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998 9999999999987 4455 566889999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHhhc
Q 035828 767 YVALGRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~g~~~~A~~l~ 780 (781)
+...|++++|++.+
T Consensus 302 ~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 302 LEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=8.2e-12 Score=119.99 Aligned_cols=193 Identities=12% Similarity=0.021 Sum_probs=164.7
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
...+..+...+...|+++.|...++.+.+.... +..+|..+...+...|++++|++.++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 99 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKALA 99 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355677777888999999999999998876432 223678888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-Ccch
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGV 725 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 725 (781)
.. +.+...+..+...+...|++++|.++++++.+ .+..|+ ...+..++..+...|++++|++.++++ ...| +...
T Consensus 100 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (252)
T 2ho1_A 100 SD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177 (252)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH
Confidence 42 33667888899999999999999999999975 235665 578889999999999999999999887 3334 4667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|.+.+
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999998865
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=7.1e-12 Score=116.79 Aligned_cols=193 Identities=17% Similarity=0.056 Sum_probs=124.6
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHH
Q 035828 503 GLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILS 577 (781)
Q Consensus 503 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 577 (781)
+++...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..|++. ...|+ ...+..+-.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456677777888888899999999888765 334568888888899999999999999888 66674 456666666
Q ss_pred Hhccc-----------CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 578 ACTQL-----------GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 578 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.+... |++++|...++...+.... +..+|..+...+...|++++|+..|++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-----------------YAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 67666 7777777777666664332 1224566666667777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.+.. .+...+..+..++...|++++|...++++++. .|+ ...+..+...+.+.|++++|++.+++.
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654 55666666767777777777777777776654 454 456666667777777777776666553
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=2.2e-11 Score=118.55 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcCCC-ChhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHH
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCYNC-NLCTWNCMISAFSQ----NKAEVRALELFRHL-EFEPNEISIVSILSA 578 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 578 (781)
+...+..+...|...|++++|...|+....+ +...+..+...|.. .+++++|+..|++. ... +...+..+-..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~ 83 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNL 83 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4556677777888888888888888876643 44677777778888 88888888888887 332 55666666666
Q ss_pred hcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 035828 579 CTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSG 650 (781)
Q Consensus 579 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g 650 (781)
+.. .+++++|...++...+.+ + ..++..+...|.. .+++++|++.|++..+.+
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~----------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---Y----------------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---C----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---C----------------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 766 788888888888777654 1 1256777777777 788888888888877754
Q ss_pred CCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCC
Q 035828 651 IRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPK 722 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~ 722 (781)
+...+..+...+.. .+++++|..++++..+. + +...+..+...|.. .+++++|++.+++.-...+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 45566666666666 77888888888877653 1 34566777777777 7888888888776521122
Q ss_pred cchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCch
Q 035828 723 PGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 723 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...+..+...+.. .+++++|...++++.+++|+++..
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777777 778888888888888887765433
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=1.6e-11 Score=115.50 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=152.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
..|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|...++.+.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 74 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-------------- 74 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------------
Confidence 34555566666666666666666666 3333 3455666666666777777777777776654321
Q ss_pred cCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 616 NCKSNAAWSSMISAYGYH-GKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
+..+|..+...+... |++++|++.++++.+.+..|+ ...+..+...+...|++++|...++++.+. .|+ ..
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 148 (225)
T 2vq2_A 75 ---SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPP 148 (225)
T ss_dssp ---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHH
T ss_pred ---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCch
Confidence 222577778888899 999999999999987434444 467888888899999999999999998865 555 57
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
.+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888999999999999999998876 3333 445566666667789999999999999999999988776655
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=3.5e-12 Score=121.86 Aligned_cols=192 Identities=6% Similarity=0.048 Sum_probs=148.6
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
...++..+...+...|+++.|...++.+.+.... +...|..+...+...|++++|++.+++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 84 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-----------------DAIPYINFANLLSSVNELERALAFYDKAL 84 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667777888999999999999998874332 22367788888999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcc
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPG 724 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 724 (781)
+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..++..+.+.|++++|++.++++ .. +.+..
T Consensus 85 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 85 ELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 742 336678888999999999999999999999876 44 4678889999999999999999999887 33 34566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999865
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=3.3e-12 Score=132.78 Aligned_cols=297 Identities=10% Similarity=0.028 Sum_probs=191.2
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHhc--CCCChHH
Q 035828 436 SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKSL--MGLDTRV 508 (781)
Q Consensus 436 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 508 (781)
..+......+...|++++|+..|++..+.. |+. ..+..+...+...|+++.|...++...... ...+.
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 84 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL-- 84 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH--
Confidence 344555667777888888888888877753 332 234444455555556666655555443211 00000
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CC---CCC----HhHHHHHHHHhc
Q 035828 509 QNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EF---EPN----EISIVSILSACT 580 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~ 580 (781)
.....+..+...+...|++++|+..+++. .. .++ ..++..+...+.
T Consensus 85 --------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 85 --------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 00123444445555555555555555554 11 111 234555555666
Q ss_pred ccCc--------------------hHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHH
Q 035828 581 QLGV--------------------LRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEA 639 (781)
Q Consensus 581 ~~~~--------------------~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A 639 (781)
..|+ ++.|...++...+.... ++... ...+|..+...+...|++++|
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA------------QGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHTBHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH------------HHHHHHHHHHHHHHccCHHHH
Confidence 6677 77777777665442100 11100 122577888889999999999
Q ss_pred HHHHHHHHhCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHH
Q 035828 640 IELFHEMCNSG-IRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 640 ~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 710 (781)
++.+++..+.. -.++ ..++..+...+...|++++|...+++.++...-.++ ..++..+...|...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999887521 0122 237888888999999999999999998764222222 46788899999999999999
Q ss_pred HHHHHhC-C---CCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhh
Q 035828 711 YEFIKNL-P---IQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 711 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.++++ . ..++ ...+..+...+...|++++|...++++.++. |....++..++.+|...|+...
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998876 1 1111 4467888888999999999999999999874 3345678889999999987643
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=1.6e-11 Score=115.48 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=164.1
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
...+..+...+...|+++.|...++.+.+.... +...|..+...+...|++++|++.++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-----------------NELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-----------------chHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456677788889999999999999998876532 223678888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhccc-CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-Ccc
Q 035828 649 SGIRPTKSSVISLLSACSHS-GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPG 724 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 724 (781)
.. +.+..++..+...+... |++++|...++++.+ .+..|+ ...+..++..+...|++++|++.++++ ...| +..
T Consensus 71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 71 IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch
Confidence 42 33667888899999999 999999999999986 234555 578889999999999999999999887 3344 466
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEP-ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..| +++..+..++..+...|+.++|...+
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 788899999999999999999999999999 99999999999999999999998764
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=4.6e-11 Score=124.92 Aligned_cols=333 Identities=11% Similarity=0.001 Sum_probs=219.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCc-
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHF---QEAIKTFKSMTQQQNASPDSVTLVNVISACGNL- 484 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~- 484 (781)
+...+.+.|++++|.++|++.....+...+..+-..|...|+. ++|+..|++..+. +...+..+-..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCC
Confidence 4556778899999999999885445666666676777778888 9999999998753 333333444423232
Q ss_pred ----cchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH---HHHHhhhcC-CCChhhHHHHHHHHHhCCChhHH
Q 035828 485 ----ELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKS---ASTVFESCY-NCNLCTWNCMISAFSQNKAEVRA 556 (781)
Q Consensus 485 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 556 (781)
++.++|...++...+.|... .+..|...|...+..++ +.+.+.... ..+...+..+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 48899999999998877433 55566777776655433 444444333 23456777788888888866555
Q ss_pred HHH----Hhhc-CCCCCHhHHHHHHHHhcccC---chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHH
Q 035828 557 LEL----FRHL-EFEPNEISIVSILSACTQLG---VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMIS 628 (781)
Q Consensus 557 ~~~----~~~~-~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 628 (781)
... ++.. ...|+ .+..|-..+...| +.++|...++...+.|..... .+..+..
T Consensus 161 ~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-----------------~~~~Lg~ 221 (452)
T 3e4b_A 161 LDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-----------------RVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-----------------HHHHHHH
Confidence 544 4443 35555 6666777777788 999999999999988865432 2344555
Q ss_pred HHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 629 AYGYH----GKGWEAIELFHEMCNSGIRPTKSSVISLLSA-C--SHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 629 ~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
.|... +++++|+++|++.. .| +...+..|... + ...++.++|.++|++..+. + ++..+..|...|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLY 293 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence 55443 79999999999987 33 34455555555 3 4589999999999998754 3 566777888888
Q ss_pred hhcC-----ChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh---
Q 035828 702 GRSG-----KLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA--- 769 (781)
Q Consensus 702 ~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 769 (781)
. .| ++++|++++++.. +.++..+..+...+.. ..|+++|..+++++.+ +.++.+...|+.+|..
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKG 369 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCC
Confidence 7 55 9999999999988 5566677777766655 3499999999999887 4568899999999985
Q ss_pred -cCChhhHHhhc
Q 035828 770 -LGRWKDAVEIG 780 (781)
Q Consensus 770 -~g~~~~A~~l~ 780 (781)
.++.++|...+
T Consensus 370 ~~~d~~~A~~~~ 381 (452)
T 3e4b_A 370 TKPDPLNAYVFS 381 (452)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 45788887654
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=3.6e-11 Score=117.06 Aligned_cols=126 Identities=9% Similarity=-0.025 Sum_probs=72.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q 035828 440 IVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGL--DTRVQNALITMY 516 (781)
Q Consensus 440 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 516 (781)
.....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...++.+...+..+ ....+..+...|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33444555555555555555555432 22 2244444445555555555555555554422111 122356666677
Q ss_pred HhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC
Q 035828 517 GRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN 568 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 568 (781)
...|++++|.+.|+... +.+...|..+...+...|++++|+..|++. ...|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 77777777777776554 334467777777788888888888888777 55554
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=5.8e-11 Score=115.53 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=146.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
+..++..+...+...|++++|+..|++. . .-+...+..+-..+.. .+++++|...++...+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~----- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN----- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH-----
Confidence 3445666667777777777777777777 3 1123445555556666 777777777777777665 222
Q ss_pred HHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhH
Q 035828 611 LDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNML 682 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 682 (781)
++..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|.+++++..
T Consensus 76 -----------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 -----------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp -----------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 45556666666 777778887777777654 55667777777776 777778887777776
Q ss_pred HHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCC
Q 035828 683 EEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 683 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 754 (781)
+. + +...+..+...|.. .+++++|++.+++.-...+...+..+...+.. .+++++|...++++.+.+|
T Consensus 142 ~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 142 DL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred hc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 54 2 34556667777766 77777777777765222344566667777777 7777888887777777755
Q ss_pred CCCchHHHHHHHHHh----cCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
+.++..|+.+|.. .|++++|++.+
T Consensus 218 --~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 218 --GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp --HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 6677777777777 77777777654
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=1.4e-11 Score=120.12 Aligned_cols=209 Identities=10% Similarity=-0.018 Sum_probs=161.0
Q ss_pred CCChhHHHHHHhhc-CCC----C-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhH
Q 035828 550 NKAEVRALELFRHL-EFE----P-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 550 ~~~~~~A~~~~~~~-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
.|++++|+..|+++ ... | +...+..+...+...|+++.|...++.+.+.... +..+|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~ 80 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----------------MPEVF 80 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------CHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----------------cHHHH
Confidence 45666777777766 321 2 2445666666777778888888888777765432 22367
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhh
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLG 702 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 702 (781)
..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|...++++.+. .|+......+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHH
Confidence 88888899999999999999999984 44 5678999999999999999999999999865 676555555555667
Q ss_pred hcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhhHH
Q 035828 703 RSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
..|++++|...+++. ...|+......++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|+
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999765 33343344445777788889999999999999988774 3788999999999999999999
Q ss_pred hhc
Q 035828 778 EIG 780 (781)
Q Consensus 778 ~l~ 780 (781)
+.+
T Consensus 236 ~~~ 238 (275)
T 1xnf_A 236 ALF 238 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=4.1e-12 Score=132.32 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=141.4
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-----------
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK----------- 635 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~----------- 635 (781)
.+..+...+...|+++.|...++...+. +-.+. ...+|..+...|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS---------------EGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH---------------HHHHHHHHHHHHHHcCcccccccchhhh
Confidence 3444445555666666666666554432 11111 12257777888888899
Q ss_pred ------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHH
Q 035828 636 ------GWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDM 700 (781)
Q Consensus 636 ------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 700 (781)
+++|++.+++..+. +..| ...++..+...+...|++++|.+.+++.++...-.++ ...+..+...
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999998887542 1112 2347888888999999999999999998765221122 2378899999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHH
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNM 766 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~ 766 (781)
|...|++++|++.++++ ...| ....+..+...+...|++++|...++++.+..++. ...+..++.+
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 99999999999998876 1111 14567888888999999999999999999886543 4488899999
Q ss_pred HHhcCChhhHHhhc
Q 035828 767 YVALGRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~g~~~~A~~l~ 780 (781)
|.+.|++++|.+.+
T Consensus 353 ~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 353 HSAIGGHERALKYA 366 (411)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 99999999999865
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.5e-11 Score=134.52 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.+|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|.+.|++.++. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 44789999999999999999999999998 5675 568999999999999999999999999865 787 5899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..+|.+.|++++|++.++++ ...|+ ...+..+...+...|++++|+..++++++++|+++.++.+|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 55564 56899999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|.+.+
T Consensus 164 A~~~~ 168 (723)
T 4gyw_A 164 YDERM 168 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=128.51 Aligned_cols=258 Identities=14% Similarity=0.069 Sum_probs=180.9
Q ss_pred HHHHHHHhcCChHHHHHHhhhcC---CCC----hhhHHHHHHHHHhCCChhHHHHHHhhc-------CCCCC-HhHHHHH
Q 035828 511 ALITMYGRCRDIKSASTVFESCY---NCN----LCTWNCMISAFSQNKAEVRALELFRHL-------EFEPN-EISIVSI 575 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~-~~~~~~l 575 (781)
.....+...|++++|...|++.. ..+ ...|..+...+...|++++|+..+++. +..|. ...+..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33444445555555555554433 111 124555566666666666666666655 11222 3456677
Q ss_pred HHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-------------------
Q 035828 576 LSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK------------------- 635 (781)
Q Consensus 576 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------------------- 635 (781)
...+...|+++.|...++...+.... ++... ...++..+...+...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccc------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 77888999999999999887653211 11110 12257778888899999
Q ss_pred -hHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcC
Q 035828 636 -GWEAIELFHEMCNS----GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSG 705 (781)
Q Consensus 636 -~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 705 (781)
+++|++.+++..+. +..|. ..++..+...+...|++++|...+++.++...-.++ ..++..++..|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998887542 21222 347888888999999999999999998765322233 248889999999999
Q ss_pred ChHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcC
Q 035828 706 KLQEAYEFIKNL-PI---QPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNMYVALG 771 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g 771 (781)
++++|++.+++. .. .++ ..++..+...+...|++++|...++++.+..+.. +..+..++.+|...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 999999998876 11 111 4467888888999999999999999999886543 557889999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|++.+
T Consensus 322 ~~~~A~~~~ 330 (406)
T 3sf4_A 322 NHDQAMHFA 330 (406)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999865
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.2e-08 Score=110.23 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=157.0
Q ss_pred HHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHH-HHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHh
Q 035828 525 ASTVFESCY---NCNLCTWNCMISAFSQNKAEVRAL-ELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 525 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 598 (781)
+..+|+++. ......|-..+.-+...|+.++|. .+|++. +..| +...+...+......|+++.|..+|+.++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555443 334567777777788888888896 999888 6445 4444556666777889999999999988764
Q ss_pred CC---------CCCch-HHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcc
Q 035828 599 GF---------QENSF-ISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSACSH 667 (781)
Q Consensus 599 ~~---------~~~~~-~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 667 (781)
.. .|+.. ....+-.. ....|...+....+.|..+.|..+|++..+. +. +....|...+..-.+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~-----~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSK-----LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHT
T ss_pred HHHHhhhhhhccCcchhhhhhhccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 21 12100 00000000 1225888888888899999999999999875 21 122333322222223
Q ss_pred -cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcH
Q 035828 668 -SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 668 -~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~ 740 (781)
.++.+.|.++|+..++. .|+ ...+...++.....|+.+.|..+|+++ ...| ....|..++.-....|+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred hCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35699999999999987 343 455678888888899999999999987 3333 3457888888888999999
Q ss_pred HHHHHHHHHhccCCCCCch
Q 035828 741 MGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~ 759 (781)
.+..+.+++.+..|+++..
T Consensus 559 ~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHhCCCCcHH
Confidence 9999999999999997654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=7.2e-12 Score=126.37 Aligned_cols=229 Identities=14% Similarity=0.071 Sum_probs=152.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhc-------CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHH
Q 035828 540 WNCMISAFSQNKAEVRALELFRHL-------EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSAL 610 (781)
Q Consensus 540 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 610 (781)
+..+...+...|++++|++.+++. +..| ....+..+...+...|+++.|...++...+.... ++...
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 121 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---- 121 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH----
Confidence 334444444444444444444443 1111 1234444555556666666666666555432111 11100
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHh
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGK--------------------GWEAIELFHEMCNS----GIRP-TKSSVISLLSAC 665 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~ 665 (781)
...++..+...+...|+ +++|++.+++..+. +..| ...++..+...+
T Consensus 122 --------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 193 (338)
T 3ro2_A 122 --------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01256677777888888 89999888876542 1122 234778888889
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----cchHHHHHHHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI---QPK----PGVWGAMLSAC 733 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~ 733 (781)
...|++++|.+.+++..+.....++ ...+..++..+...|++++|.+.+++. .. .++ ...+..+...+
T Consensus 194 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (338)
T 3ro2_A 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 9999999999999998765222222 247888999999999999999998876 11 111 44677888889
Q ss_pred HhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCChhhHHhhc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...|++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999999876543 447889999999999999999865
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=8.5e-11 Score=122.30 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=172.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHhc--C---CCChHH
Q 035828 439 NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKSL--M---GLDTRV 508 (781)
Q Consensus 439 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~ 508 (781)
..+...+...|++++|+..|++..+.. |+. ..+..+...+...|++++|...+++..... . ......
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344556677778888888887777753 332 234445555555666666666555544321 0 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCC-CHhHHHHHHHHhcccCc---
Q 035828 509 QNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEP-NEISIVSILSACTQLGV--- 584 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~--- 584 (781)
+..+...|...|++++|...+++.. +++.+.+..| ...++..+...+...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL------------------------TLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 3444444555555555554443321 0111101111 12344555556666666
Q ss_pred --------------hHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 585 --------------LRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 585 --------------~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
++.|...++...+. +..+. ...+|..+...+...|++++|++.+++.
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA---------------QGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH---------------HHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66776666654432 11111 1226778888899999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGI-RPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.+..- .++ ..++..+...+...|++++|.+.+++.++...-..+ ..++..+...|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76211 112 237888889999999999999999998765221222 467888999999999999999998876
Q ss_pred -CC------CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 718 -PI------QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 718 -~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.. .+ ....+..+...+...|++++|...++++.++.+.
T Consensus 330 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 11 11 1346778888899999999999999999988754
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=1.2e-10 Score=117.23 Aligned_cols=269 Identities=11% Similarity=0.043 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHh----cCCC-ChH
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKS----LMGL-DTR 507 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 507 (781)
+......+...|++++|+..|++..+.. |+. ..+..+...+...|+++.|...++..... +..+ ...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3444566778888888888888887753 332 34445555556666666666666554322 1010 122
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC----HhHHHHHHHHh
Q 035828 508 VQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL----EFEPN----EISIVSILSAC 579 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~ 579 (781)
.+..+...+...|++++|+..+++. ...++ ..++..+...+
T Consensus 85 -------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 85 -------------------------------ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 133 (338)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3444444555555555555555544 11111 22455555566
Q ss_pred cccCc--------------------hHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC
Q 035828 580 TQLGV--------------------LRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK 635 (781)
Q Consensus 580 ~~~~~--------------------~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 635 (781)
...|+ ++.|...++...+. +..+. ....+..+...+...|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA---------------QGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHHTC
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHHHHHHhCC
Confidence 66666 77777776665432 11111 11257778888999999
Q ss_pred hHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCC
Q 035828 636 GWEAIELFHEMCNSGI-RPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 706 (781)
+++|++.+++..+... .++ ..++..+...+...|++++|.+.+++.++...-.++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 9999999998875210 111 237888888999999999999999998765222222 4678889999999999
Q ss_pred hHHHHHHHHhC-CC------CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 707 LQEAYEFIKNL-PI------QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 707 ~~~A~~~~~~~-~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+++|.+.++++ .. .+ ....+..+...+...|++++|...++++.++.++
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999998876 11 11 1336778888899999999999999999988765
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=7.1e-11 Score=106.97 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|..+...|...|++++|+..+...... .| +...+..+...+...++++.|.+.+++..+. .|+ ...+..+..
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~ 115 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGL 115 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 5777778888889999999999888774 34 4556777777888889999999999988765 555 578888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
.|.+.|++++|++.+++. ...| +...+..++..+.+.|++++|+..++++++++|+++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999998877 4445 456788899999999999999999999999998764
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=7.8e-11 Score=106.88 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.|..+...+...|++++|++.++++.+. .+.+...+..+...+...|++++|.+.++++.+. .|+ ...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 5667778889999999999999999874 2336678888999999999999999999999866 454 6788899999
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999887 3 334566788888999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 035828 779 IG 780 (781)
Q Consensus 779 l~ 780 (781)
.+
T Consensus 166 ~~ 167 (186)
T 3as5_A 166 HF 167 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=1.3e-09 Score=107.92 Aligned_cols=215 Identities=10% Similarity=0.108 Sum_probs=145.5
Q ss_pred HHHHHHhhhcC---CCChhhHHHHHHHHH-------hCCCh-------hHHHHHHhhc-C-CCCCH-hHHHHHHHHhccc
Q 035828 523 KSASTVFESCY---NCNLCTWNCMISAFS-------QNKAE-------VRALELFRHL-E-FEPNE-ISIVSILSACTQL 582 (781)
Q Consensus 523 ~~A~~~~~~~~---~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~-~-~~p~~-~~~~~ll~~~~~~ 582 (781)
++|..+|++.. ..++..|..+...+. ..|+. ++|...|++. . +.|+. ..+..+...+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 34555555444 234455655555543 34665 7777777777 5 56643 4566667777777
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 035828 583 GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA-AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISL 661 (781)
Q Consensus 583 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 661 (781)
|+++.|..+|+..++. .|+. .. +|..+...+.+.|++++|..+|++..+.+ +++...|...
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDID---------------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSC---------------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccC---------------ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 7888888888777763 2321 11 47777777788888888888888888742 2233344433
Q ss_pred HHHhc-ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--cchHHHHHHHH
Q 035828 662 LSACS-HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK--PGVWGAMLSAC 733 (781)
Q Consensus 662 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~ 733 (781)
..... ..|+.++|.++|++.++. .|+ ...|..++..+.+.|++++|..+++++ . .+|+ ...|..++..+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 33322 368888888888888765 454 577888888888888888888888876 2 2543 34677778888
Q ss_pred HhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
...|+.+.|..+++++.+..|+++.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHcCCHHHHHHHHHHHHHHcccccc
Confidence 8888888999888888888887554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=6.4e-10 Score=114.20 Aligned_cols=231 Identities=8% Similarity=0.010 Sum_probs=172.0
Q ss_pred HHHHHHhcCChHHHHHHhhhcCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC-----HhHHH
Q 035828 512 LITMYGRCRDIKSASTVFESCYN-----CN----LCTWNCMISAFSQNKAEVRALELFRHL----EFEPN-----EISIV 573 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~ 573 (781)
....+...|++++|...++.... ++ ..+|..+...|...|++++|+..+++. ...++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556788999999888886642 22 247788888899999999999988887 12222 34667
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--- 649 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--- 649 (781)
.+-..+...|+++.|...++...+.... ++... ...+|..+...|...|++++|++.+++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL------------MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 7777888999999999999887653211 11110 1125778889999999999999999998762
Q ss_pred -CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCC---hHHHHHHHHhCCCCC
Q 035828 650 -GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGK---LQEAYEFIKNLPIQP 721 (781)
Q Consensus 650 -g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p 721 (781)
+..| ...++..+...+...|++++|.+.+++.++...-..+ ...+..+...+...|+ +++|++++++.+..|
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH
Confidence 2323 4557888999999999999999999998764221122 2346678888999999 899999999986555
Q ss_pred C-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 722 K-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 722 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
. ...+..+...+...|++++|...++++.++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4 33677788889999999999999999987643
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=8.8e-11 Score=120.67 Aligned_cols=226 Identities=9% Similarity=0.061 Sum_probs=169.0
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CC---CCC----HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCc-hHHHHHHHh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EF---EPN----EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENS-FISSALLDM 613 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 613 (781)
....+...|++++|+..|++. .. .|+ ..++..+-..+...|+++.|...+....+.-...+. ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 455678899999999999998 32 343 246777778889999999999999887663211111 00
Q ss_pred hhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc---
Q 035828 614 YSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY--- 685 (781)
Q Consensus 614 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 685 (781)
....+++.+...|...|++++|++.+++..+. +-.+ ...++..+...+...|++++|.+.+++.++..
T Consensus 182 ----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 182 ----RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 01226788889999999999999999988752 1111 12378889999999999999999999987621
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-----CCC-cchHHHHHHHHHhcCC---cHHHHHHHHHHhccCC
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-----QPK-PGVWGAMLSACSHHGD---TKMGKQVAELLFKLEP 754 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p 754 (781)
+..|. ..++..++..|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .++|...+++. ...|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 12244 578899999999999999999998876 11 222 2234667777778888 88888888876 3346
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.....+..++.+|...|++++|.+.+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66778889999999999999998765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=122.37 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-C--------CCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-E--------FEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQE 602 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 602 (781)
++..+...+...|++++|+.+|+++ . ..| ....+..+...+...|+++.|...++...+. +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444555555555555444 1 122 1234455555666667777777766665543 1112
Q ss_pred CchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHH
Q 035828 603 NSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGL 675 (781)
Q Consensus 603 ~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~ 675 (781)
. ...+|..+...+...|++++|++.+++..+. +..| ....+..+...+...|++++|.
T Consensus 109 ~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 109 A---------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp H---------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred H---------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1226788888999999999999999998864 2233 3457888889999999999999
Q ss_pred HHHHHhHHHc-----CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC----------CCCCcc-hH------HHHHHH
Q 035828 676 QYYNNMLEEY-----DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP----------IQPKPG-VW------GAMLSA 732 (781)
Q Consensus 676 ~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~~-~~------~~l~~~ 732 (781)
++++++++.. +..|. ...+..++..|...|++++|.+.++++- ..+... .+ ......
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 9999987642 11333 4678899999999999999999987761 122211 22 222333
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...+.+.+|...++++....|..+.++..++.+|.+.|++++|++.+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345677778888888888888999999999999999999999999875
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=7.4e-10 Score=104.26 Aligned_cols=205 Identities=9% Similarity=0.078 Sum_probs=137.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCC--CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFE--PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLD 612 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 612 (781)
++..|......+...|++++|+..|++. ... ++...+..+..++...|++++|...++...+....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-----------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-----------
Confidence 4556777777888888888888888887 433 56666666666777778888888888777754332
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-K-------SSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
+..+|..+...+...|++++|++.+++..+ ..|+ . ..|..+...+...|++++|.+.+++++
T Consensus 75 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-- 144 (228)
T 4i17_A 75 ------LANAYIGKSAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT-- 144 (228)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--
T ss_pred ------hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--
Confidence 122577777777888888888888887776 3443 3 346666667777788888888887775
Q ss_pred cCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 685 YDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNLP-I-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 685 ~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...|+ ...+..+..+|...|+. .++++. . ..+...+... .....+.+++|...++++.+++|+++.+
T Consensus 145 -~~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 145 -DVTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -hcCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 34665 35666777777655543 222221 1 1122222222 2334566799999999999999999999
Q ss_pred HHHHHHHHHh
Q 035828 760 YISLSNMYVA 769 (781)
Q Consensus 760 ~~~l~~~~~~ 769 (781)
...++.+...
T Consensus 217 ~~~l~~i~~~ 226 (228)
T 4i17_A 217 KQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9988877543
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=2.9e-08 Score=107.18 Aligned_cols=423 Identities=9% Similarity=-0.040 Sum_probs=251.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNS---LSKAEL 334 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 334 (781)
..+-+..|++-.... +-|..+|..++..+.+.+.++.+..+++.+... .+.....|...+..-.+.++ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344444455554432 457777777777777777777788888777766 33456666666776666666 777777
Q ss_pred HHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcC--CCchhHHHHHHHH
Q 035828 335 LFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGF--SNNTIGVNALMHM 412 (781)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~ 412 (781)
+|++... .+ .|+...|...+.-
T Consensus 125 lfeRal~--------------------------------------------------------~~~~~~sv~LW~~Yl~f 148 (679)
T 4e6h_A 125 VLARCLS--------------------------------------------------------KELGNNDLSLWLSYITY 148 (679)
T ss_dssp HHHHHTC--------------------------------------------------------SSSCCCCHHHHHHHHHH
T ss_pred HHHHHHH--------------------------------------------------------hcCCCCCHHHHHHHHHH
Confidence 7776655 22 3777777777766
Q ss_pred HHhcCCH--------HHHHHHHHhh----cC-CC-CcccHHHHHHHHHh---------CCChHHHHHHHHHHHHcCCCCC
Q 035828 413 YINCGDL--------VAAFSLLQRI----SH-NS-DTSCWNIVIVACTQ---------NGHFQEAIKTFKSMTQQQNASP 469 (781)
Q Consensus 413 ~~~~~~~--------~~a~~~~~~~----~~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~~p 469 (781)
..+.++. +.+.++|+.. .. .+ +...|...+..... .++.+.+..+|++.+... ...
T Consensus 149 ~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP-~~~ 227 (679)
T 4e6h_A 149 VRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP-MDC 227 (679)
T ss_dssp HHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC-CSS
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc-cHH
Confidence 5554443 2334566553 22 33 33567776665432 234566777777776421 111
Q ss_pred ChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhh-------cCC--------
Q 035828 470 DSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES-------CYN-------- 534 (781)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~-------- 534 (781)
-..+|.....- .+.-+...+..++.+. ..+++.|...+.+ +..
T Consensus 228 ~~~~w~~Y~~f-e~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 228 LESMWQRYTQW-EQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHH-HHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHHHHHHHHHH-HHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 11222111111 0000011111111111 0111122222211 100
Q ss_pred ------C--C------hhhHHHHHHHHHhCCC-------hhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHH-H
Q 035828 535 ------C--N------LCTWNCMISAFSQNKA-------EVRALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGK-Q 590 (781)
Q Consensus 535 ------~--~------~~~~~~l~~~~~~~~~-------~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~-~ 590 (781)
| + ...|...+.---..+. .+.+..+|++. . ..-....|......+...|+.+.|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 1245555443333221 23345667666 3 2224555555666666778888886 8
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC-------
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG---------IRPT------- 654 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~------- 654 (781)
+++...... |.. ...|-..+......|+++.|.++|+++.... -.|+
T Consensus 366 il~rAi~~~--P~s---------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 366 YLKLGQQCI--PNS---------------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHHC--TTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHhC--CCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 888877643 221 2246677788888999999999999998631 0142
Q ss_pred -----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcC-ChHHHHHHHHhC-C-CCCCcchH
Q 035828 655 -----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG-KLQEAYEFIKNL-P-IQPKPGVW 726 (781)
Q Consensus 655 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~ 726 (781)
...|...++...+.|+.+.|..+|.++.+.. ..+....|...+..-.+.+ +.+.|.++|+.. . .+.+...|
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 2367888888888899999999999997641 1122445555555444544 599999999876 2 33345567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPE---NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+......|+.+.|..+++++++..|+ ....+..+.......|+.+.+.+|.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888899999999999999999874 4456777777788889999998875
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=1.8e-10 Score=108.57 Aligned_cols=152 Identities=8% Similarity=-0.029 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
++..|......+...|++++|++.|++..+..-.++...+..+..++...|++++|.+.+++.++. .|+ ...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 344677788889999999999999999998643367778888899999999999999999999854 776 5789999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-c-------chHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQPK-P-------GVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
..+|...|++++|++.+++. ...|+ . ..+..+...+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999887 44454 3 35777888888999999999999999999999 99999999999
Q ss_pred HHhcCCh
Q 035828 767 YVALGRW 773 (781)
Q Consensus 767 ~~~~g~~ 773 (781)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=9.5e-10 Score=108.81 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=159.8
Q ss_pred hHHHHHHhhc-CCCC-CHhHHHHHHHHhc-------ccCch-------HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 554 VRALELFRHL-EFEP-NEISIVSILSACT-------QLGVL-------RHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 554 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
++|+..|++. ...| +...|..+...+. ..|++ ++|..+++..++.- .|+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~-------------- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKK-------------- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTT--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-Ccc--------------
Confidence 6788888888 5555 4445655555554 35775 89999999888731 232
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-S-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+...|..++..+...|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++.++. .|. ...|
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~ 171 (308)
T 2ond_A 98 -NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 171 (308)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHH
Confidence 223688889999999999999999999998 56653 3 7999999999999999999999999743 454 4555
Q ss_pred HHHHHHhh-hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc---CCC-CCchHHHHHHHH
Q 035828 695 VCIVDMLG-RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL---EPE-NVGYYISLSNMY 767 (781)
Q Consensus 695 ~~l~~~~~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~ 767 (781)
...+.... ..|++++|.++++++ ...| +...|..++..+.+.|+.+.|..+++++++. .|+ ....+..++..+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44444322 379999999999887 3334 5668889999999999999999999999996 443 667889999999
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|+.++|.+++
T Consensus 252 ~~~g~~~~a~~~~ 264 (308)
T 2ond_A 252 SNIGDLASILKVE 264 (308)
T ss_dssp HHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999998875
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=1.1e-09 Score=115.26 Aligned_cols=191 Identities=11% Similarity=0.075 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHHhcCCh-HHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHh
Q 035828 505 DTRVQNALITMYGRCRDI-KSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSAC 579 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 579 (781)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+..+|...|++++|++.|++. ...|+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 555666666777777777 77777777654 334567888888888889999999999888 7888877888888888
Q ss_pred ccc---------CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc--------CChHHHHHH
Q 035828 580 TQL---------GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH--------GKGWEAIEL 642 (781)
Q Consensus 580 ~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~ 642 (781)
... |++++|...++...+.... +...|..+...|... |++++|++.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----------------DGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 888 9999999999998886532 233678888888888 999999999
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 643 FHEMCNSGIRP----TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 643 ~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|++..+ +.| +...|..+..++...|++++|.+.|++.++. .|+ ...+..+..++...|++++|++.+.++
T Consensus 244 ~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998 455 6778999999999999999999999999865 676 467889999999999999999876655
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1e-08 Score=104.89 Aligned_cols=228 Identities=9% Similarity=0.069 Sum_probs=165.9
Q ss_pred HHHHHhcCChHHHHHHhhhcCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC-----HhHHHH
Q 035828 513 ITMYGRCRDIKSASTVFESCYN-----CN----LCTWNCMISAFSQNKAEVRALELFRHL----EFEPN-----EISIVS 574 (781)
Q Consensus 513 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~~ 574 (781)
...+...|++++|...|+.... ++ ..++..+...|...|++++|+..+++. ...++ ..++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3446678899999888876542 22 246777888889999999999888887 12221 346667
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035828 575 ILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS---- 649 (781)
Q Consensus 575 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 649 (781)
+-..+...|+++.|...++...+.... ++... ...++..+...|...|++++|++.+++..+.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRF------------IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 777888999999999998887653211 11110 1125778888899999999999999998761
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-
Q 035828 650 GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGK---LQEAYEFIKNLPIQPK- 722 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~- 722 (781)
+.+....++..+...+.+.|++++|...+++.++...-.++ ...+..+...+...|+ +.+|++.+++.+..|+
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~ 335 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH
Confidence 22223568888889999999999999999998876333223 2355666677778888 8899999988754443
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
...+..+...+...|++++|...++++.+.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 335667788888899999999999988764
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=2.5e-10 Score=113.53 Aligned_cols=233 Identities=10% Similarity=0.103 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhcCC--------CC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CC--------CC
Q 035828 508 VQNALITMYGRCRDIKSASTVFESCYN--------CN---LCTWNCMISAFSQNKAEVRALELFRHL-EF--------EP 567 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~--------~p 567 (781)
.+..+...+...|++++|...++++.. .+ ...+..+...+...|++++|+..+++. .. .|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444455555555555555544332 11 134555555666666666666666555 11 22
Q ss_pred -CHhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHH
Q 035828 568 -NEISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 568 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
....+..+...+...|++++|...++...+. +..|.. ..++..+...+...|++++|+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV---------------AKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH---------------HHHHHHHHHHHHHcCCHHHHH
Confidence 2345666777778888888888888777654 222221 226788888999999999999
Q ss_pred HHHHHHHhC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc------CCCCC-cchHH------HHHHH
Q 035828 641 ELFHEMCNS------GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEY------DVRPE-TEHHV------CIVDM 700 (781)
Q Consensus 641 ~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~------~l~~~ 700 (781)
++++++.+. +..|+ ..++..+...+...|++++|.+.++++++.. ...|. ...+. .+...
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998763 22343 3478888899999999999999999987631 12222 22222 22333
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 701 LGRSGKLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+...+.+.+|...+++.. ..| ...++..+...+...|++++|...+++++++.|+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 445556666666666653 333 4557888999999999999999999999988775
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=2.2e-08 Score=102.33 Aligned_cols=200 Identities=11% Similarity=-0.063 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-------CCC--CC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-------EFE--PN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
..+...+...|++++|...+++. +.. |. ...+..+...+...|++++|...++...+.........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 172 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---- 172 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----
Confidence 34444555566666666665554 111 22 22344455555666777777777666655433221110
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHH-----HHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVI-----SLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
...+|..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++..+.
T Consensus 173 --------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 173 --------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp --------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 0114666666666667777777766666542111110 1111 1122345666666666666665422
Q ss_pred cCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 685 YDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 685 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.|. ...+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++.+
T Consensus 245 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 ---EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp ---CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 221 113445556666666666666666554 111111 1334445555566666666666666665
Q ss_pred cCCC
Q 035828 752 LEPE 755 (781)
Q Consensus 752 ~~p~ 755 (781)
+.++
T Consensus 322 ~~~~ 325 (373)
T 1hz4_A 322 LANR 325 (373)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5544
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=4.9e-09 Score=107.30 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=165.2
Q ss_pred HHHHHHHhCCChhHHHHHHhhc-C---CCCC----HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHH
Q 035828 542 CMISAFSQNKAEVRALELFRHL-E---FEPN----EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLD 612 (781)
Q Consensus 542 ~l~~~~~~~~~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 612 (781)
.....+...|++++|+..|++. . ..++ ..++..+-..+...|+++.|...++...+.... ++...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------ 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh------
Confidence 3445578899999999999998 3 2233 346667777889999999999999887663211 11000
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC-
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYD- 686 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 686 (781)
....+++.+...|...|++++|++.+++..+. |..+ ...++..+...+...|++++|.+.+++.++...
T Consensus 180 -----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 180 -----RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 01226788889999999999999999988752 1111 234788888999999999999999999876211
Q ss_pred -CCCC-cchHHHHHHHhhhcCChHHHHHHHHhC----CCCCC---cchHHHHHHHHHhcCC---cHHHHHHHHHHhccCC
Q 035828 687 -VRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK---PGVWGAMLSACSHHGD---TKMGKQVAELLFKLEP 754 (781)
Q Consensus 687 -~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p 754 (781)
..|. ..++..++..+.+.|++++|.+.+++. ...++ ...+..+...+...|+ .++|...+++. ...|
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~ 333 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHA 333 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChh
Confidence 2343 578889999999999999999999876 21112 2234445555566778 78888888772 2335
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+....+..++..|...|++++|.+.+
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~ 359 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFY 359 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677889999999999999998764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=2.2e-09 Score=97.14 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 700 (781)
.|..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+. .| +...+..++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHH
Confidence 3445555566677777777777776653 1234556667777777777888888877777654 33 34667777777
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++.+..|+++..
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 88888888888777765 2223 45567777777888888888888888888887776643
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.9e-09 Score=105.53 Aligned_cols=144 Identities=7% Similarity=-0.037 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-
Q 035828 622 AWSSMISAYGYH-GKGWEAIELFHEMCNSGIRPT-------KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE- 692 (781)
Q Consensus 622 ~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~- 692 (781)
+|+.+...|... |++++|+..|++..+ +.|+ ..++..+...+...|++++|...+++..+...-.+...
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 566777788886 999999999998876 2221 34678888889999999999999999876511111211
Q ss_pred ----hHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc------hHHHHHHHHH--hcCCcHHHHHHHHHHhccCCCCCch
Q 035828 693 ----HHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG------VWGAMLSACS--HHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 693 ----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
.|..++.++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++.+++|.....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 5677888899999999999999887 4555432 2344555554 3567889999998888888876655
Q ss_pred HHHHHHHH
Q 035828 760 YISLSNMY 767 (781)
Q Consensus 760 ~~~l~~~~ 767 (781)
+..+-...
T Consensus 277 ~~~~k~~~ 284 (292)
T 1qqe_A 277 LNKIKESI 284 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=3.4e-10 Score=97.95 Aligned_cols=139 Identities=10% Similarity=-0.000 Sum_probs=117.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.+...|++++|++.++.... ..|+ ...+..+...|...|++++|.+.+++.++. .|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 34567899999999998875 3453 346777888999999999999999999865 776 6899999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 707 LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQ-VAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
+++|+..++++ ...|+ ...+..+...+.+.|++++|.+ +++++.+++|+++.++...+.++..+|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999887 55664 5678889999999999877655 5699999999999999999999999886
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=3.5e-09 Score=99.12 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=123.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 696 (781)
.+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...++++++.+.-.|.. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4556677788999999999999999974 343 2477788899999999999999999998773222221 24555
Q ss_pred HHHHhhh------------------cCChHHHHHHHHhC-CCCCCcc-hH-----------------HHHHHHHHhcCCc
Q 035828 697 IVDMLGR------------------SGKLQEAYEFIKNL-PIQPKPG-VW-----------------GAMLSACSHHGDT 739 (781)
Q Consensus 697 l~~~~~~------------------~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~ 739 (781)
+..++.+ .|++++|+..++++ ...|+.. .+ ..+...+.+.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 6666654 67899999999987 5556543 22 2445567889999
Q ss_pred HHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 740 KMGKQVAELLFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.|+..++++++..|+++ .++..++.+|.+.|++++|++.+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999986 57999999999999999999865
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=4.2e-09 Score=101.41 Aligned_cols=155 Identities=8% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHhcc--------cCcHHHHHHHHHHhHHHcCCCCC-c
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGI-RPT-KSSVISLLSACSH--------SGLVDEGLQYYNNMLEEYDVRPE-T 691 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~ 691 (781)
+..+..++...|++++|+..|++..+..- .|. ...+..+..++.. .|++++|...|+++++. .|+ .
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~ 131 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHE 131 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCch
Confidence 44455555566666666666666665210 111 2344455555555 66677777777766655 333 1
Q ss_pred chH-----------------HHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhc----------CCc
Q 035828 692 EHH-----------------VCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHH----------GDT 739 (781)
Q Consensus 692 ~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~ 739 (781)
... ..++..|.+.|++++|+..++++ ...|+ ...+..++.++... |++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~ 211 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY 211 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence 222 56788899999999999998876 33343 33566777777655 889
Q ss_pred HHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCChhhHHhhc
Q 035828 740 KMGKQVAELLFKLEPENVG---YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|...++++.+..|+++. +...+..++.+.|+++++..+.
T Consensus 212 ~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 212 RRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9999999999999999964 5667788888888888876653
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=3e-09 Score=102.42 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHV 695 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 695 (781)
..+-.+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|++.++.+.-.|. ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 35666777788999999999999999984 453 467888889999999999999999999987433333 45777
Q ss_pred HHHHHhhh--------cCChHHHHHHHHhC-CCCCCc-chH-----------------HHHHHHHHhcCCcHHHHHHHHH
Q 035828 696 CIVDMLGR--------SGKLQEAYEFIKNL-PIQPKP-GVW-----------------GAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 696 ~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+..++.. .|++++|++.++++ ...|+. ... ..+...+...|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88899988 99999999999887 334443 333 4557778899999999999999
Q ss_pred HhccCCCCC---chHHHHHHHHHhc----------CChhhHHhhc
Q 035828 749 LFKLEPENV---GYYISLSNMYVAL----------GRWKDAVEIG 780 (781)
Q Consensus 749 ~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~l~ 780 (781)
+++..|+++ .++..++.+|... |++++|++.+
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 999999854 5899999999977 8889998865
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=2.1e-09 Score=117.55 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|.+.|++.++. .|+ ...|..+..
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 566666667777777777777777766 4553 456777777777777777777777777644 565 466777777
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+|.+.|++++|++.++++ ...|+ ...+..++..+...|++++|.+.++++.++.
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 777777777777777665 44453 4466677777777777777777777776653
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=2e-09 Score=105.14 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=133.6
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHH
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 642 (781)
..++..+...+...|+++.|...++...+. +-.|. ...+|..+...+...|++++|++.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~ 107 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA---------------VAATLNNLAVLYGKRGKYKEAEPL 107 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH---------------HHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH---------------HHHHHHHHHHHHHHhccHHHHHHH
Confidence 345556666667777777777777766553 22221 122688888999999999999999
Q ss_pred HHHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC-cchHHHHHHHhhhcCChHH
Q 035828 643 FHEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE-TEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 643 ~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~ 709 (781)
+++..+. .-.| ...++..+...+...|++++|..+++++++.. +..|. ..++..+...|.+.|++++
T Consensus 108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998763 1123 34578888999999999999999999987641 11333 4688899999999999999
Q ss_pred HHHHHHhCC----------CCCCc-chHHHHHHHHHhcC------CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 710 AYEFIKNLP----------IQPKP-GVWGAMLSACSHHG------DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 710 A~~~~~~~~----------~~p~~-~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
|++.++++- ..+.. ..+..+.......+ .+..+...++......|..+..+..++.+|...|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 999987661 23333 33444433333322 24444444444444556677789999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
+++|++.+
T Consensus 268 ~~~A~~~~ 275 (283)
T 3edt_B 268 LEAAHTLE 275 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=8.7e-09 Score=100.83 Aligned_cols=159 Identities=10% Similarity=0.015 Sum_probs=116.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhccc-CcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHS-GLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
+|+.+...|...|++++|+..+++..+. |-.+ -..++..+...|... |++++|...+++.++...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 5777888888999999999998887752 1111 134788888899986 9999999999998865221111 3
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc--------hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch---
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG--------VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY--- 759 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--- 759 (781)
.++..++..|.+.|++++|++.+++. ...|+.. .+..++..+...|+++.|...++++.+++|+.+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 56889999999999999999999886 3334321 45677777888999999999999999999986653
Q ss_pred --HHHHHHHHH--hcCChhhHHhhc
Q 035828 760 --YISLSNMYV--ALGRWKDAVEIG 780 (781)
Q Consensus 760 --~~~l~~~~~--~~g~~~~A~~l~ 780 (781)
+..++..|. ..+++++|++.+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 445666665 457788888765
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=7.5e-09 Score=114.13 Aligned_cols=172 Identities=12% Similarity=-0.033 Sum_probs=142.7
Q ss_pred cccCchHHHHHHHHHHHH------hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 580 TQLGVLRHGKQIHGHVFH------LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
...|++++|.+.++...+ ....|+ +...|..+...+...|++++|++.|++..+ ..|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE---------------SVELPLMEVRALLDLGDVAKATRKLDDLAE--RVG 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc---------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCc
Confidence 677888888888888771 122232 233678888889999999999999999998 455
Q ss_pred -CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHH
Q 035828 654 -TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAM 729 (781)
Q Consensus 654 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 729 (781)
+...|..+..++...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++ ++.++++ ...| +...+..+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 5568888999999999999999999999865 676 6889999999999999999 9999887 4455 45678999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..++...|++++|+..++++.+++|+++.++..++.+|...|+
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999987665
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=2.4e-07 Score=94.48 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcC-------C---CC-hhhHHHHHHHHHhCCChhHHHHHHhhc-C----CCC--CHh
Q 035828 509 QNALITMYGRCRDIKSASTVFESCY-------N---CN-LCTWNCMISAFSQNKAEVRALELFRHL-E----FEP--NEI 570 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~-------~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~----~~p--~~~ 570 (781)
+..+...+...|++++|...+++.. . +. ...+..+...+...|++++|...+++. . ..| ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445556666777777766665443 1 11 124555666777788888888888776 2 112 134
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCc-hHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLGFQENS-FISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
++..+...+...|+++.|...++........++. ..+... .....+..+...|++++|...+++....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------ANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------HHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 5666667778889999999988887664322221 110000 0112334467899999999999998764
Q ss_pred CCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC---CCc-chHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 650 GIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR---PET-EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 650 g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
...+. ...+..+...+...|++++|...+++..+...-. ++. ..+..+..++...|++++|.+.+++. ...+
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 32211 2256677888899999999999999886542111 122 36777888899999999999998875 1111
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
... .+..+...| +....+++++....|-
T Consensus 325 ~~g----~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 325 RTG----FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHC----CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred ccc----HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 100 112222333 5566667777666664
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=8.8e-09 Score=87.35 Aligned_cols=130 Identities=24% Similarity=0.369 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .|+ ...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 67778888888888888888888887742 235567777778888888888888888888755 343 4667777888
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++.+..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888887766 2223 4556777777777888888888888888877775
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=1.2e-07 Score=90.33 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-----CcchHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-----ETEHHVC 696 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~ 696 (781)
+..+...+...|++++|++++.+....|-.+ +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence 3456666777888888888888876654322 4456777778888888888888888888654 66 2444555
Q ss_pred HHHH--hhhcC--ChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc----------CCCCCchHH
Q 035828 697 IVDM--LGRSG--KLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL----------EPENVGYYI 761 (781)
Q Consensus 697 l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~ 761 (781)
|+.+ ....| ++.+|..+|+++ ...|+......+..++.+.|++++|++.++.+.+. +|+++.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 5544 33334 888888888887 33444223334444677888999999988887776 478888888
Q ss_pred HHHHHHHhcCChhhHHhh
Q 035828 762 SLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l 779 (781)
+++.+....|+ +|.++
T Consensus 260 N~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDL 275 (310)
T ss_dssp HHHHHHHHTTC--TTHHH
T ss_pred HHHHHHHHhCh--HHHHH
Confidence 88888887886 55544
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.7e-09 Score=93.47 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=98.3
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
|...+...|++++|++.++... ...|+ ...+..+...|.+.|++++|++.++++ ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998875 44665 467778999999999999999999987 4555 5668899999999999
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999887653
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.8e-07 Score=88.99 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=126.1
Q ss_pred HHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc
Q 035828 556 ALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH 633 (781)
Q Consensus 556 A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 633 (781)
|+..|++. . -.++..++..+..++...|++++|.+++...+..+..++ +...+..++..+.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~---------------~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG---------------TTELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT---------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC---------------cHHHHHHHHHHHHHC
Confidence 45555555 2 234444555555566666777777777766655443221 122567778889999
Q ss_pred CChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHh--cccC--cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 634 GKGWEAIELFHEMCNSGIRP-----TKSSVISLLSAC--SHSG--LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
|+.+.|.+.+++|.+ ..| +..+...|..++ ...| +..+|..+|+++.+. .|+......+..++.+.
T Consensus 150 ~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 150 NNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp TCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHc
Confidence 999999999999988 577 356667777663 3334 899999999998654 55522233344488999
Q ss_pred CChHHHHHHHHhC-CC-----------CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 705 GKLQEAYEFIKNL-PI-----------QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|++++|.+.++.+ .. +.++.++..++......|+ .|.++++++.+..|++|.+...
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 9999999998764 21 2345566566555566786 8899999999999999965443
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=3.3e-08 Score=83.71 Aligned_cols=121 Identities=22% Similarity=0.362 Sum_probs=106.0
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 733 (781)
.+..+...+...|++++|..+++++.+. .|+ ...+..++..+...|++++|.+.++++ .. +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4667788888999999999999999865 444 577888999999999999999999887 33 33456788888889
Q ss_pred HhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...|++++|...++++.+..|+++..+..++.+|...|++++|.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=1.1e-07 Score=93.81 Aligned_cols=153 Identities=11% Similarity=0.008 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cch
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSG---IRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEH 693 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 693 (781)
|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++.+++.++...-..+ ..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4444445555566666666655544310 0111 2355556666666 7777777777666543211111 245
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC---C----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch-----H
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP---K----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY-----Y 760 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~ 760 (781)
+..+...|.+.|++++|++.+++. ...| . ...+..++..+...|++++|...++++. +.|+.... .
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l 236 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAAL 236 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHH
Confidence 666667777777777777766654 1111 1 1134444445555677777777777777 66654432 2
Q ss_pred HHHHHHHHhcCChhhHHh
Q 035828 761 ISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~ 778 (781)
..++..| ..|+.+++.+
T Consensus 237 ~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 237 EDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHH-HhcCHHHHHH
Confidence 2334434 4556555544
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=1.3e-08 Score=91.02 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=120.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++.+. .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455667778899999999999999887 455 4568888999999999999999999998754 4533333222222
Q ss_pred -hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhh
Q 035828 701 -LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN--VGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 701 -~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 775 (781)
+...++..+|++.+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333444577777776 4455 46678889999999999999999999999999875 6699999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 163 A~~~y 167 (176)
T 2r5s_A 163 IASKY 167 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.7e-08 Score=98.28 Aligned_cols=154 Identities=6% Similarity=-0.022 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-hHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE-HHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~ 699 (781)
.+..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++.+. .|+.. .......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~ 193 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHH
Confidence 456677778899999999999999988 456 4568888999999999999999999998654 66643 2333334
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhh
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN--VGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.+.++.++|++.+++. ...| +...+..+...+...|++++|...++++++.+|++ +.++..|+.+|...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 467888889999888876 4445 56688899999999999999999999999999998 8899999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 274 a~~~~ 278 (287)
T 3qou_A 274 LASXY 278 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=5e-08 Score=89.83 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
++.+...|...|++++|+..|++..+ ..| +...+..+...+...|++++|...|+++++. .|+ ...+..+...
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 34477778899999999999999998 456 5678899999999999999999999999865 776 5788899998
Q ss_pred hhhcCCh--HHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 701 LGRSGKL--QEAYEFIKNLP-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 701 ~~~~g~~--~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
|...|+. +++...++... ..|....+.....++...|++++|+..+++++++.|++. ....|..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 8776643 44555565552 222233444556667778999999999999999999743 33344443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=1.9e-07 Score=86.07 Aligned_cols=153 Identities=8% Similarity=-0.048 Sum_probs=127.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHhHHHcCCCCCcchH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG----LVDEGLQYYNNMLEEYDVRPETEHH 694 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~~ 694 (781)
++.++..+...|...+++++|+++|++..+.| +...+..|...|.. + +.++|.++|++..+. -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 34467778888888999999999999999865 56677778888877 6 999999999998643 245778
Q ss_pred HHHHHHhhh----cCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 695 VCIVDMLGR----SGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 695 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
..|...|.. .+++++|++++++. ...|. +..+..+...+.. .+++++|..+++++.++ |+++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 889988887 88999999999987 34443 6788888888888 78999999999999998 778889999
Q ss_pred HHHHHHhc-C-----ChhhHHhhc
Q 035828 763 LSNMYVAL-G-----RWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~-g-----~~~~A~~l~ 780 (781)
|+.+|... | +.++|++.+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHH
Confidence 99999864 3 899998765
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=1.3e-07 Score=92.04 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=110.7
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHHh-----CC-CCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 035828 570 ISIVSILSACTQLGVLRHGKQIHGHVFHL-----GF-QENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELF 643 (781)
Q Consensus 570 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 643 (781)
.++..+...+...|++++|...++...+. +. .|. ...+|..+...+...|++++|++.+
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD---------------VAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH---------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35556666667777777777777666543 11 121 1226788888999999999999999
Q ss_pred HHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc------CCCCC-cchHHHHHHHhhhcC----
Q 035828 644 HEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY------DVRPE-TEHHVCIVDMLGRSG---- 705 (781)
Q Consensus 644 ~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g---- 705 (781)
++..+. +-.| ...++..+...+...|++++|.++++++++.. ...+. ...+..+...+...+
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhH
Confidence 998874 1134 34578889999999999999999999987641 12333 345555554444433
Q ss_pred --ChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 706 --KLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 706 --~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
.+.++...++... ..| ....+..+...+...|++++|...++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 231 SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555543 223 3446888899999999999999999998875
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.2e-08 Score=83.26 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=97.8
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchH
Q 035828 651 IRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVW 726 (781)
Q Consensus 651 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 726 (781)
+.|+. ..+......+.+.|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55643 46777888999999999999999999865 665 688999999999999999999999887 4445 45678
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
..+..++...|++++|+..++++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999999888753
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=9e-09 Score=88.27 Aligned_cols=104 Identities=9% Similarity=0.010 Sum_probs=71.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchH
Q 035828 651 IRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVW 726 (781)
Q Consensus 651 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 726 (781)
+.|+. ..+..+...+...|++++|...|+++++. .|+ +..|..+..+|.+.|++++|++.++++ ...| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44533 35666666777777777777777777654 554 466777777777777777777777766 3344 45567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7777777777777777777777777777654
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.1e-08 Score=110.50 Aligned_cols=146 Identities=10% Similarity=-0.006 Sum_probs=128.0
Q ss_pred HhcCChHHHHHHHHHHHh------CCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 631 GYHGKGWEAIELFHEMCN------SGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~------~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
...|++++|++.+++..+ ....| +...+..+..++...|++++|.+.++++++. .|+ ...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHHH
Confidence 678999999999999981 01344 4567888889999999999999999999865 665 578999999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 703 RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|++++|++.|+++ ...| +...+..+...+...|++++ +..++++++++|+++.++..++.+|.+.|++++|++.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 4555 56678899999999999999 99999999999999999999999999999999998865
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2.8e-08 Score=107.81 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
|++++|++.+++..+ ..| +...+..+...+...|++++|.+.+++.++ ..|+ ...+..+..+|...|++++|+
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555554 233 234555555555555666666666655542 2443 345555555566666666666
Q ss_pred HHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CChhhHHhh
Q 035828 712 EFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL---GRWKDAVEI 779 (781)
Q Consensus 712 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~l 779 (781)
+.++++ ...| +...+..+...+...|++++|.+.++++.+++|+++..+..++.+|... |++++|.+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 555554 2223 2334555555555566666666666666666666666666666666665 555555543
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=2.1e-08 Score=83.43 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.+.|+ ...+...+..|.+.|++++|++.++++ ...| +...|..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35676 477888999999999999999999987 4445 56688899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+|...|++++|++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAY 104 (126)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 999999999999999865
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.9e-07 Score=90.08 Aligned_cols=157 Identities=6% Similarity=-0.056 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKS----SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHH 694 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~ 694 (781)
...+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|...++++++...-.++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334667889999999999999998742 223321 3334666677788999999999999874222233 2368
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC-----C---CCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------Cch
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNLP-----I---QPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGY 759 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 759 (781)
..++..|...|++++|++.++++- . .+. ..++..++..+.+.|++++|...+++++++.++. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999987761 1 111 2367889999999999999999999999876433 568
Q ss_pred HHHHHHHHHhcCC-hhhHHhhc
Q 035828 760 YISLSNMYVALGR-WKDAVEIG 780 (781)
Q Consensus 760 ~~~l~~~~~~~g~-~~~A~~l~ 780 (781)
+..+|.+|.+.|+ +++|++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHH
Confidence 9999999999995 59998754
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1.4e-08 Score=87.40 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=97.4
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 641 ELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
..|+++.. +.|+ ...+..+...+...|++++|...|++.++. .|+ ...|..+..+|...|++++|++.++++
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555554 4553 446777888889999999999999998865 665 578888999999999999999999887
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...| ++..+..+..++...|++++|...+++++++.|+++........+..
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 3444 55678888888999999999999999999999998877655555443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=1.4e-07 Score=102.39 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..+...+...|++++|++.+++..+ ..| +...+..+..++...|++++|.+.+++.++. .|+ ...+..+..
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~ 99 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA---APEHPGIALWLGH 99 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 566677777788888888888888877 344 4567777888888888888888888888765 555 467788888
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH---GDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
+|.+.|++++|++.++++ ...| +...+..+...+... |+.++|.+.++++++.+|++...+..++
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888776 3344 445677777777778 8888888888888888888777766555
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=6.4e-07 Score=82.86 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=116.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.+..+...+...|++++|++.|++.. .|+...+..+...+...|++++|.+.+++.++. .|+ ...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 35556777889999999999999874 678889999999999999999999999999866 555 5789999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-Cc----------------chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KP----------------GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|...|++++|++.++++ ...| +. ..+..+...+...|++++|...++++.+..|++......
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 160 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHH
Confidence 99999999999999876 2233 22 578888889999999999999999999999987655544
Q ss_pred HHHHHH
Q 035828 763 LSNMYV 768 (781)
Q Consensus 763 l~~~~~ 768 (781)
.+....
T Consensus 161 ~a~~~~ 166 (213)
T 1hh8_A 161 KAMECV 166 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=3e-07 Score=89.97 Aligned_cols=157 Identities=6% Similarity=-0.071 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-K----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TE 692 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 692 (781)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++.++...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455567778899999999999998887432211 1 12344556667889999999999998754221122 34
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC------CC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK-----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE------NV 757 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 757 (781)
+|..++..|...|++++|++.++++ ...|+ ..++..++..+...|++++|...++++.++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999998776 12222 247888999999999999999999999987532 25
Q ss_pred chHHHHHHHHHhcCChhhH-Hh
Q 035828 758 GYYISLSNMYVALGRWKDA-VE 778 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A-~~ 778 (781)
..+..+|.+|.+.|++++| .+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH
Confidence 6789999999999999999 54
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=6.1e-07 Score=83.74 Aligned_cols=131 Identities=10% Similarity=0.081 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHh------------------cccCcHHHHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS----SVISLLSAC------------------SHSGLVDEGLQYYNN 680 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~------------------~~~~~~~~a~~~~~~ 680 (781)
+..+..++...|++++|+..|++..+. .|+.. .+..+..++ ...|++++|...|++
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 444455555666666666666665552 23221 222222222 235788888888888
Q ss_pred hHHHcCCCCCc-chH-----------------HHHHHHhhhcCChHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcC
Q 035828 681 MLEEYDVRPET-EHH-----------------VCIVDMLGRSGKLQEAYEFIKNL-PIQPKP----GVWGAMLSACSHHG 737 (781)
Q Consensus 681 ~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g 737 (781)
+++. .|+. ..+ ..++..|.+.|++++|+..++++ ...|+. ..+..++.++.+.|
T Consensus 122 ~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 122 LVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence 8754 5553 222 35677889999999999999887 344443 46788888999999
Q ss_pred CcHHHHHHHHHHhccCCCCCc
Q 035828 738 DTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+.++|...++.+....|++..
T Consensus 199 ~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHCCSCCCC
T ss_pred CcHHHHHHHHHHHhhCCCchh
Confidence 999999999999998888654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.2e-07 Score=87.88 Aligned_cols=119 Identities=12% Similarity=-0.008 Sum_probs=104.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
.+..+...+...|++++|...+++.. .|+...+..++..|.+.|++++|++.+++. ...| +...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667888999999999998873 667789999999999999999999999887 3334 5567888999999
Q ss_pred hcCCcHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCChhhHHhhc
Q 035828 735 HHGDTKMGKQVAELLFKLEPENV----------------GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|++++|...++++.+..|+++ ..+..++.+|.+.|++++|++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999888 89999999999999999998865
No 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-07 Score=79.74 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
+...+..+...+...|++++|...+++.++ ..|+ ...+..++..+...|++++|++.++++ ...| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 445777778888888888888888888764 3554 577888888888899999998888876 3334 456788888
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+...|++++|...++++.+..|+++..+..++.+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999998875
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=3e-08 Score=97.77 Aligned_cols=156 Identities=8% Similarity=-0.036 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC--CC--cchH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNS----GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR--PE--TEHH 694 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~~~ 694 (781)
+.....|...|++++|++.|.+..+. |-.+. ..+|..+...|...|++++|...+++.++.+.-. |. ..++
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445567789999999988887652 11111 3478888889999999999999999987653211 21 3678
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC------chH
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV------GYY 760 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~ 760 (781)
..+...|.. |++++|++.+++. ...| ...++..+...+...|++++|+..++++.++.|++. ..+
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 889999988 9999999998876 2111 135678888999999999999999999999876554 367
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|...|++++|++.+
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 78888999999999998765
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=1.1e-07 Score=92.53 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHH
Q 035828 652 RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAM 729 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 729 (781)
+.+...+..+...+...|++++|...++++++. .|+ ...+..+...+.+.|++++|++.++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334557777888889999999999999999876 776 578999999999999999999999998 456654433333
Q ss_pred HH-HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 730 LS-ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 730 ~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.. .+...|+.+.|...++++.+.+|+++..+..|+.+|...|++++|++.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 32 3567888999999999999999999999999999999999999999865
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.7e-07 Score=77.85 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~ 731 (781)
...+..+...+...|++++|.+.++++.+. .|+ ...+..++..+.+.|++++|+..++++ .. +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 356677777778888888888888888765 343 567778888888888888888888776 22 335567788888
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.+...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999988765
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=1.8e-07 Score=78.42 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
+...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|++.+++. ...| +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 3456777777888888888888888888765 443 577888888888999999999888776 3334 456788888
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
..+...|++++|...++++.+..|+++..+..++.++.+.|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999998863
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.9e-07 Score=82.41 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=64.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
+..+...+...|++++|...+++.++. .|+ ...+..++.++...|++++|++.+++. ...| +...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555555443 332 345555555555556666665555544 2222 3344555555556
Q ss_pred hcCCcHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhhHHhh
Q 035828 735 HHGDTKMGKQVAELLFKLEPENVGYYISLSNM--YVALGRWKDAVEI 779 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~l 779 (781)
..|++++|...++++.+..|+++..+..++.+ +...|++++|++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666666666666666666666555333333 5556666666554
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=2e-07 Score=85.68 Aligned_cols=151 Identities=12% Similarity=0.050 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH----------------HHHHhcccCcHHHHHHHHHHhHHHcC
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVIS----------------LLSACSHSGLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 686 (781)
-.....+...|++++|+..|++..+ ..|+. ..|.. +..++...|++++|...+++.++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3344556789999999999999988 56653 45666 888899999999999999999866
Q ss_pred CCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC--cHHHHHHHHHHhccCCCCCchHH
Q 035828 687 VRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGD--TKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 687 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+ ...+..+..+|...|++++|++.++++ ...| +...+..+...+...|+ .+.+...++++....|. ...+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 676 588999999999999999999999987 4555 45578888877766553 45566666666433322 23567
Q ss_pred HHHHHHHhcCChhhHHhhc
Q 035828 762 SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l~ 780 (781)
.++..+...|++++|++.+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSL 180 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 7899999999999998754
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=2.8e-07 Score=82.19 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA-CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
|..+...+...|++++|+..+++... ..|+...+..+... +...++..+|...+++.++. .|+ ...+..+...
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~ 117 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA---NPDNFELACELAVQ 117 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 44444455555555555555555544 22222222111111 11111222356666666543 554 4566667777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
+...|++++|++.++++ ...|+ ...+..+...+...|+.++|...+++++
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777766655 44443 3356666666667777777777776654
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=1.9e-06 Score=83.05 Aligned_cols=224 Identities=9% Similarity=0.031 Sum_probs=153.0
Q ss_pred ChHHHHHHhhhcC---CCChhhHHHHHHHHHhCC--ChhHHHHHHhhc-CCCCCHh-HHHHHHHHh----ccc---CchH
Q 035828 521 DIKSASTVFESCY---NCNLCTWNCMISAFSQNK--AEVRALELFRHL-EFEPNEI-SIVSILSAC----TQL---GVLR 586 (781)
Q Consensus 521 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~----~~~---~~~~ 586 (781)
..++|+..++.+. +.+..+|+.--..+...| ++++++.+++.+ ...|... .++.--..+ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3356777777665 233457777777777777 888888888888 5666433 222211111 222 6778
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW--EAIELFHEMCNSGIRPTKSSVISLLSA 664 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~l~~~ 664 (781)
++..+++.+.+... .+-.+|+--.-.+...|+++ ++++.++++.+.. .-|...|+.-...
T Consensus 128 ~EL~~~~~~l~~~p-----------------kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~l 189 (306)
T 3dra_A 128 REFDILEAMLSSDP-----------------KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 88888888877543 25667777777777778887 8888888888743 2255667666666
Q ss_pred hcccCc------HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHH-HHHHHHhC-CC----CCCcchHHHHHH
Q 035828 665 CSHSGL------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQE-AYEFIKNL-PI----QPKPGVWGAMLS 731 (781)
Q Consensus 665 ~~~~~~------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~ 731 (781)
+...++ ++++++.+++++.. .|+ ...|..+...+.+.|+..+ +.++..+. .. ..++..+..++.
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 666665 78888888888765 665 4677777777777777544 45566665 21 235567778888
Q ss_pred HHHhcCCcHHHHHHHHHHhc-cCCCCCchHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFK-LEPENVGYYISLSN 765 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 765 (781)
.+.+.|+.++|.+.++.+.+ .+|-....+...+.
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 88888888899999988886 68888877776654
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=9.7e-08 Score=82.03 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...++++++. .|+ +..+..+..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHH
Confidence 344444455555555555555555544 223 3334444555555555555555555555433 333 344555555
Q ss_pred HhhhcCChHHHHHHHHhC
Q 035828 700 MLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~ 717 (781)
+|...|++++|++.+++.
T Consensus 98 ~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555443
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.57 E-value=5.3e-05 Score=79.39 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACS-HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
..|-..+..+.+.++.+.|..+|++.... .++...|......-. ..++.+.|..+|+..++.++-. +..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 35777777777788899999999999321 223444433222212 2347999999999998874322 345666778
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
...+.|+.++|..+++++. .....|...+.--...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 3456788888877889999999999888874
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=8.4e-08 Score=81.98 Aligned_cols=126 Identities=8% Similarity=-0.065 Sum_probs=96.5
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C
Q 035828 642 LFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P 718 (781)
Q Consensus 642 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 718 (781)
.|++... +.|+ ...+..+...+...|++++|...|+++++. .|+ ...|..+..+|.+.|++++|++.++++ .
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444443 4453 346666777888899999999999998865 665 578888999999999999999999887 3
Q ss_pred CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 719 IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 719 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..| ++..+..+..++...|++++|...++++.++.|+++........+....+.
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 444 456778888889999999999999999999999988887766665544433
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2e-07 Score=92.86 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc----------------chHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET----------------EHHVC 696 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----------------~~~~~ 696 (781)
+++++|++.++...+ ..| +...+..+...+...|++++|...|++.++. .|+. ..|..
T Consensus 127 ~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHH
Confidence 344444444443332 233 2346666777777777788888777777655 4442 67888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888876 3444 55678888888889999999999999999999999999999999999999988
Q ss_pred hHH
Q 035828 775 DAV 777 (781)
Q Consensus 775 ~A~ 777 (781)
+|.
T Consensus 282 ~a~ 284 (336)
T 1p5q_A 282 ARE 284 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=2e-07 Score=79.86 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=76.4
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.+.|+ ...+..+...+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++.+++|+++.+++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 467778888888888888888888876 3445 45677888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+|.+.|++++|++.+
T Consensus 110 lg~~~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECF 127 (151)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 888888888888888754
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=1e-07 Score=85.16 Aligned_cols=132 Identities=8% Similarity=0.061 Sum_probs=104.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH-hhhcCCh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM-LGRSGKL 707 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 707 (781)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++++. .|+ ...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 566789999999999988742 336678889999999999999999999999865 454 5778888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 708 --QEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 708 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
++|++.++++ ...| +...+..+...+...|++++|...++++.+..|+++.....+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999887 4445 45678888888999999999999999999999998876655443
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.5e-05 Score=77.77 Aligned_cols=127 Identities=6% Similarity=-0.045 Sum_probs=82.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC----CC-cchHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIR-PT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR----PE-TEHHV 695 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----p~-~~~~~ 695 (781)
+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|..+++++++...-. |. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444455666777777777777663221 22 2257777777777788888888887776432111 11 34677
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCC-cHHHHHHHHHHhcc
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGD-TKMGKQVAELLFKL 752 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 752 (781)
.++..|.+.|++++|++.++++ +..+. ...+..+...+.+.|+ +++|...++++.++
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7888888888888888777655 11111 4467777777778884 58888888887764
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=2.2e-06 Score=83.73 Aligned_cols=127 Identities=7% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSG---IRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHV 695 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~ 695 (781)
+...+...|++++|++.+++..+.. ..+. ..+++.+...|...|++++|...++++++.....|+ ..+|.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4444566677777777777766421 1111 236677777777777777777777777632222232 14677
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHH-HHHHHHHhcc
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMG-KQVAELLFKL 752 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 752 (781)
.++..|.+.|++++|++.+++. ...+ -...+..+...+.+.|++++| ...++++..+
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7777777888888887777654 1111 134566677777777888888 6667776654
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=2.6e-07 Score=86.77 Aligned_cols=117 Identities=9% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCC----cchHHHHHHHHHhc
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPK----PGVWGAMLSACSHH 736 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~ 736 (781)
+...+...|++++|.+.|+.+.. ..|+......+...+.+.|+|++|+..|++....|+ ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 44556667777777777776643 244422455555666777777777777765533332 22455666667777
Q ss_pred CCcHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 737 GDTKMGKQVAELLFKLE--PE-NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|++++|+..|+++.... |. .+.+.+.++.++.++|+.++|.+++
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776432 33 4446677777777777777777654
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=4.4e-07 Score=85.21 Aligned_cols=138 Identities=9% Similarity=-0.048 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 700 (781)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566788899999999999999874 465555566666788899999999999866421 1 121 2478889999
Q ss_pred hhhcCChHHHHHHHHhCC--CC-CC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 701 LGRSGKLQEAYEFIKNLP--IQ-PK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~--~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
+.+.|++++|++.+++.. .. |. ...+.....++.+.|+.++|...++++...+|+ +.+...|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999872 21 43 235667777888999999999999999999999 777766654
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=3.9e-07 Score=88.24 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE 683 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 683 (781)
.|..+...|...|++++|+..+++..+ +.| +...+..+..++...|++++|...+++.++
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554 233 334555555555555666666665555543
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.5e-06 Score=71.10 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|.+.+++. ...| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666667777788888888888887755 443 567777888888888888888887766 3334 4556778888
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
.+...|++++|...++++.+..|+++..+..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 8888999999999999999999999988888877653
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.43 E-value=2.4e-07 Score=76.23 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=39.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
.+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444445555554444443 2222 2334444444444445555555555555555555555555555555555555
Q ss_pred hhHHh
Q 035828 774 KDAVE 778 (781)
Q Consensus 774 ~~A~~ 778 (781)
++|++
T Consensus 102 ~~A~~ 106 (121)
T 1hxi_A 102 NAALA 106 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=8.2e-07 Score=75.72 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
...+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...+++.++. .|+ +..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHH
Confidence 33445555556666666666666666655 233 3445555556666666666666666666543 343 4555566
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+|...|++++|++.+++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=1.2e-07 Score=86.61 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=108.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--------------cchH
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--------------TEHH 694 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~~ 694 (781)
.....|+++++.+.|+.-.+. .......+..+...+...|++++|...|++.++.....|+ ...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344557777776666543321 1112346777778888899999999999998764222221 1678
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|...+++++++.|+++.++..++.++...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 88999999999999999999877 3344 556788888999999999999999999999999999999999999999888
Q ss_pred hhhHH
Q 035828 773 WKDAV 777 (781)
Q Consensus 773 ~~~A~ 777 (781)
.+++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87765
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=1.1e-06 Score=78.44 Aligned_cols=113 Identities=8% Similarity=0.154 Sum_probs=75.7
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCCc-
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSA-CSHHGDT- 739 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~- 739 (781)
+...|++++|...+++.++. .|+ ...+..+...|...|++++|++.++++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567777777777777654 443 467777777777777777777777765 2333 44456666666 5567777
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 740 -KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|...++++++.+|+++..+..++.+|...|++++|++.+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77777777777777777777777777777778777777654
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.3e-07 Score=75.10 Aligned_cols=112 Identities=8% Similarity=-0.067 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|...|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356777888889999999999999998865 565 588899999999999999999998877 4445 4557888888
Q ss_pred HHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHh
Q 035828 732 ACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVA 769 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 769 (781)
++...|++++|...++++++++ |+++.+...+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 8999999999999999999999 8888888888776654
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=1.6e-06 Score=79.46 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=108.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC---CCCC-cchHHHHHHHhhhcCC
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYD---VRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~ 706 (781)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.++... ..|. ...+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568999999965555431 123456888888889999999999999999876422 2222 4678889999999999
Q ss_pred hHHHHHHHHhC-C---CCC-C----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC--CCC----chHHHHHHHHHhcC
Q 035828 707 LQEAYEFIKNL-P---IQP-K----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP--ENV----GYYISLSNMYVALG 771 (781)
Q Consensus 707 ~~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g 771 (781)
+++|.+.+++. . ..+ + ...+..+...+...|++++|...++++.+..+ +++ ..+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988765 1 122 2 33577788888899999999999999987642 222 23578999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|.+.+
T Consensus 162 ~~~~A~~~~ 170 (203)
T 3gw4_A 162 NLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998764
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=1.5e-06 Score=76.39 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666666777777777777777777654 454 467777777777788888887777765 3344 3556777777
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.+...|++++|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 77788888888888888888888888765555444
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.2e-06 Score=73.57 Aligned_cols=114 Identities=12% Similarity=-0.017 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWG 727 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 727 (781)
+...+..+...+...|++++|.+.+++.++ ..|+ ...+..+...|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456777777888888888888888888863 4666 567888888888999999999888776 3344 455778
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.+...+...|++++|...++++.+++|+++..+..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8888889999999999999999999999999988888876554
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.39 E-value=7.1e-05 Score=72.15 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=131.0
Q ss_pred ChHHHHHHhhhcC---CCChhhHHHHHHHH----HhC---CChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH--
Q 035828 521 DIKSASTVFESCY---NCNLCTWNCMISAF----SQN---KAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR-- 586 (781)
Q Consensus 521 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-- 586 (781)
+++++++.++.+. ..+..+|+.--..+ ... +++++++.+++++ ...| +...++.---.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 6666666666554 23334555444433 444 6788999999888 6555 5566666555566667777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCC-CHHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK------GWEAIELFHEMCNSGIRP-TKSSVI 659 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~g~~p-~~~~~~ 659 (781)
++.+.++.+++..+. |-.+|+--...+...++ ++++++.++++... .| |...|+
T Consensus 164 ~EL~~~~~~i~~d~~-----------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~ 224 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-----------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHH
T ss_pred HHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHH
Confidence 889999999887654 33368877777777776 89999999999884 45 667888
Q ss_pred HHHHHhcccCcH-HHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcc-hHHH
Q 035828 660 SLLSACSHSGLV-DEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPG-VWGA 728 (781)
Q Consensus 660 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~ 728 (781)
.+...+.+.|+. +....+.+++.+.....| ++..+..+++.|.+.|+.++|++.++.+. ..|... .|+.
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888777777764 445667777654311123 45788899999999999999999999883 566433 4443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.5e-06 Score=72.32 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
...|..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|...+++.++. .|+ ...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 345666677777777777787777777763 34 4566777777777777777777777777654 554 4667777
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
..++...|++++|++.+++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 77777777777777777665
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=7.1e-06 Score=74.98 Aligned_cols=122 Identities=16% Similarity=0.055 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP--TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
++..+...+...|++++|++.+++..+. +-.| ....+..+...+...|++++|...+++.++......+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4666777788888888888888876652 1122 1235777777888889999999998887654211222 2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.++..+...+...|++++|.+.+++. +......|+......+...+....|.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRA------------RDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHhcccchhhc
Confidence 34577888888888888888877664 23344555655555555555555443
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=9.5e-07 Score=71.54 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CcchHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGVWGAM 729 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 729 (781)
...+..+...+...|++++|...+++.++. .|+ ...+..+...+...|++++|++.+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345666666777777777777777777654 343 456677777777777777777777665 3333 34566667
Q ss_pred HHHHHhc-CCcHHHHHHHHHHhccCCCCC
Q 035828 730 LSACSHH-GDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 730 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 757 (781)
...+... |++++|.+.++++.+..|+++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777777 777777777777777777654
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=9.8e-07 Score=92.44 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=95.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
+...+...|++++|.+.+++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334566778889999999888765 665 578888899999999999999988876 4455 4557888888899999
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhhHHhhc
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNM--YVALGRWKDAVEIG 780 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~l~ 780 (781)
++++|++.++++.++.|+++.++..++.+ +.++|++++|++++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999988 88899999998865
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.1e-06 Score=74.51 Aligned_cols=120 Identities=7% Similarity=-0.109 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHH
Q 035828 653 PTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAM 729 (781)
Q Consensus 653 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 729 (781)
.+...+..+...+...|++++|...+++.++. .|+ ...+..+..++...|++++|+..++++ ...| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46678888999999999999999999998865 565 578899999999999999999998877 3444 45678888
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCC-----CCchHHHHHHHHHhcCChhh
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPE-----NVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~ 775 (781)
...+...|++++|...+++++++.|+ +..+...+..+..+.+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999888 66677777766665544443
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1.2e-06 Score=77.01 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=81.7
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999987 4445 56688899999999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|++.+
T Consensus 91 ~~g~~~~A~~~~ 102 (164)
T 3sz7_A 91 DMADYKGAKEAY 102 (164)
T ss_dssp HTTCHHHHHHHH
T ss_pred HccCHHHHHHHH
Confidence 999999999865
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=2e-06 Score=72.76 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=71.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
++..|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...+++.++. .|+ ...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHH
Confidence 4567777778888888888888888887763 34 4567777777778888888888888887755 454 467777
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+..+|...|++++|++.++++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 888888888888888877765
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=8.5e-07 Score=73.73 Aligned_cols=88 Identities=9% Similarity=-0.006 Sum_probs=56.1
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc-------hHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG-------YYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 763 (781)
.+..++..+.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|+++. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445666666666666666666654 3333 3445666666666777777777777777776665543 56667
Q ss_pred HHHHHhcCChhhHHhhc
Q 035828 764 SNMYVALGRWKDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~ 780 (781)
|.+|...|++++|++.+
T Consensus 90 g~~~~~~~~~~~A~~~~ 106 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWF 106 (127)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 77777777877777654
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.5e-06 Score=72.62 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=90.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGA 728 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 728 (781)
+..+...+...|++++|...++++.+. .|+. ..+..+..++.+.|++++|++.++++ ...|+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 345667788899999999999999876 4543 47888999999999999999999886 33444 445778
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
+...+...|++++|...++++.+..|+++.....+..+-.-.++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence 888899999999999999999999999988877777665555443
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.7e-06 Score=72.71 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=81.5
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+.+.|++++|++.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467888999999999999999999987 4555 56678888888999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|++.+
T Consensus 96 ~~~~~~~A~~~~ 107 (133)
T 2lni_A 96 AMKDYTKAMDVY 107 (133)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999865
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=3e-06 Score=70.40 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--------cchH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK--------PGVW 726 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~ 726 (781)
.+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4445555666666666666666666543 444 355666666666666666666665544 11221 1245
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
..+...+...|++++|++.++++++..|+ +....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 55666677778888888888887776664 44333
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.27 E-value=2.9e-05 Score=71.33 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=104.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc----chHHHHHHHHHHHHhcCCCChHH
Q 035828 433 SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE----LAFEGKSLHGLALKSLMGLDTRV 508 (781)
Q Consensus 433 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~ 508 (781)
.++..+..+-..|...+++++|+..|++..+.+ +...+..+-..+.. + +.++|...++...+.| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555566666666666666666666543 33344444444444 4 6667777776665554 4556
Q ss_pred HHHHHHHHHh----cCChHHHHHHhhhcCCCC-----hhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHH
Q 035828 509 QNALITMYGR----CRDIKSASTVFESCYNCN-----LCTWNCMISAFSQ----NKAEVRALELFRHL-EFEPNEISIVS 574 (781)
Q Consensus 509 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ 574 (781)
+..|...|.. .+++++|.+.|++....+ +..+..|...|.. .++.++|+..|++. ...++...+..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6666677766 778888888888777443 4677777778877 77888899888888 44334445555
Q ss_pred HHHHhcc------cCchHHHHHHHHHHHHhCC
Q 035828 575 ILSACTQ------LGVLRHGKQIHGHVFHLGF 600 (781)
Q Consensus 575 ll~~~~~------~~~~~~a~~~~~~~~~~~~ 600 (781)
|-..+.. ..+.+.|...++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5555532 2388999999888877765
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=3.6e-06 Score=87.80 Aligned_cols=122 Identities=9% Similarity=-0.006 Sum_probs=82.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-------------cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-------------TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP- 721 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 721 (781)
.+..+...+.+.|++++|...|++.++.....+. ...|..+..+|.+.|++++|++.++++ ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4555555556666666666666666543111110 356777888888888888888887776 3334
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+...+..+..++...|++++|...++++++++|+++.++..++.++.+.|++++|.+
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888888888888888888888888888888777653
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=8.2e-06 Score=68.00 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 693 (781)
.+..+...+...|++++|++.|++..+. .|+. ..+..+..++...|++++|...++++++. .|+ ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~ 78 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGG 78 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHH
Confidence 4566778888999999999999999874 4443 37777888889999999999999999876 444 456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
+..+..++.+.|++++|++.++++ ...|+..
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 788889999999999999998876 3445544
No 160
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.0021 Score=67.17 Aligned_cols=83 Identities=5% Similarity=-0.042 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccc-chhhhhhHHHHHHHh-cCCC-ChHHHHHHHHHHH----hcCC
Q 035828 256 GKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSL-LLREGRSVHGYAIRR-LLGY-DLLMMNSLMDFYS----KSNS 328 (781)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~----~~~~ 328 (781)
|+++.+..+|++... ..|+...|..-+....+.+ ..+.+..+|+..+.. |..+ +...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 677888888887776 3467777777776665555 345666777776654 4333 5567777666554 2356
Q ss_pred HHHHHHHHHhhCC
Q 035828 329 LSKAELLFNAIAP 341 (781)
Q Consensus 329 ~~~a~~~~~~~~~ 341 (781)
++.+..+|+....
T Consensus 105 ~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 105 IEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7778888877755
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=1.7e-06 Score=70.78 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=80.1
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+...|++++|++.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345778889999999999999999887 3344 56678888888999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|.+.+
T Consensus 84 ~~~~~~~A~~~~ 95 (118)
T 1elw_A 84 FLNRFEEAKRTY 95 (118)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999865
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=3e-06 Score=72.75 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=82.1
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...+..+...+...|++++|++.+++. ...|+ ...+..+...+...|++++|...++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 467888899999999999999999987 56676 5678888888999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHhhc
Q 035828 766 MYVALGRWKDAVEIG 780 (781)
Q Consensus 766 ~~~~~g~~~~A~~l~ 780 (781)
+|...|++++|++.+
T Consensus 108 ~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 108 ALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 999999999999875
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.22 E-value=2.8e-06 Score=70.26 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=80.3
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+...|++++|++.++++ ...| +...+..++..+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467888999999999999999999887 3333 56678888999999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|.+.+
T Consensus 89 ~~~~~~~A~~~~ 100 (125)
T 1na0_A 89 KQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 999999998865
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.22 E-value=5e-06 Score=80.41 Aligned_cols=154 Identities=8% Similarity=-0.040 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
..+..+...+...|++++|+..|++..+ ..| +...|..+..++...|++++|...+++.+ ...|+ ...+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHH
Confidence 4677788889999999999999999988 455 66788889999999999999999999987 45776 57889999
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCc------chHHH-------------------------HHHHHHhcCCcHHHHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQPKP------GVWGA-------------------------MLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~-------------------------l~~~~~~~g~~~~A~~~~ 746 (781)
.+|...|++++|++.++++ ...|+. ..+.. .+..+ ..|++++|.+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL-IAAERERELEEC 158 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH-HHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999998765 222211 11111 11111 256778888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhc-CChhhHHhhc
Q 035828 747 ELLFKLEPENVGYYISLSNMYVAL-GRWKDAVEIG 780 (781)
Q Consensus 747 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~l~ 780 (781)
+++.+++|++......+..++.+. +++++|.+++
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f 193 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELF 193 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777777777777666 6677777654
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=8.5e-06 Score=65.73 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
...+..++..+.+.|++++|+..++++ ...| +...+..+...+...|++++|...++++.+..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345555666666666666666666554 2222 3445555666666666666666666666666666 66666666666
Q ss_pred HHhc-CChhhHHhhc
Q 035828 767 YVAL-GRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~-g~~~~A~~l~ 780 (781)
|.+. |++++|++.+
T Consensus 86 ~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 86 LRYIEGKEVEAEIAE 100 (112)
T ss_dssp HTTCSSCSHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 6666 6666666543
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=1.2e-05 Score=70.51 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.+++.++. .|+ ...+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 5777888889999999999999999874 44 5678888999999999999999999999866 555 578999999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC-cchHH--HHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQPK-PGVWG--AMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
++...|++++|.+.++++ ...|+ ...+. ..+..+...|++++|...+++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999887 34443 33443 3334467789999999999887654
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=3.9e-06 Score=84.49 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=95.6
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHc-------------CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEY-------------DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP- 721 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 721 (781)
+..+...+.+.|++++|.+.|++.++.. ...|. ...|..+..+|.+.|++++|++.++++ ...|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444445555555555555555554310 12343 578889999999999999999999887 5556
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+...+..+..++...|++++|...++++++++|+++.++..++.++...++.++|.+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999988754
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=4.8e-06 Score=68.36 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=66.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
+..+...+.+.|++++|...+++.++. .|+ ...|..+..++.+.|++++|+..++++ ...| +...+..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555667778888888888887755 554 567777788888888888888887766 4444 3456777777778
Q ss_pred hcCCcHHHHHHHHHHhccCCCCC
Q 035828 735 HHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
..|++++|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888764
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=4.2e-06 Score=69.95 Aligned_cols=111 Identities=9% Similarity=0.006 Sum_probs=71.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC----C----cchH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP----K----PGVW 726 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~ 726 (781)
.+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...++++ ...| + ...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4455555556666666666666666544 332 455666666666666666666666554 1111 1 4456
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
..+...+...|++++|...++++.+..| ++.....++.++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888877 5777777777665543
No 170
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.2e-06 Score=69.25 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=72.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYIS 762 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 762 (781)
...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++ +..+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667777888888888888888776 3334 45677888888889999999999999999999998 788899
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
++.++...|+.++|++.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 999999999988887654
No 171
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=1e-05 Score=80.51 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
.|..+...+...|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|...++++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 677888889999999999999999988 4454 378999999999999999999999999865
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHH-HHHHHHHhcc
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMG-KQVAELLFKL 752 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 752 (781)
.|+ ...|..+..+|...|++++|++.++++ ...| +...+..+...+...|+.++| ...++++++.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 688999999999999999999999887 4555 455778888888889999998 5577777754
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=7.5e-05 Score=72.68 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=76.0
Q ss_pred hHHHHHHhhhcC---CCChhhHHHHHHHHHhCC-ChhHHHHHHhhc-CCCCCH-hHHHHHHHHhccc-C-chHHHHHHHH
Q 035828 522 IKSASTVFESCY---NCNLCTWNCMISAFSQNK-AEVRALELFRHL-EFEPNE-ISIVSILSACTQL-G-VLRHGKQIHG 593 (781)
Q Consensus 522 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~-~-~~~~a~~~~~ 593 (781)
.++|+++++.+. ..+..+|+.--..+...| .+++++.+++.+ ...|.. ..++.--..+... + +++++.++++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 345555555544 223345555555555555 366666666666 444532 2233222222222 2 3444444444
Q ss_pred HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035828 594 HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW--------EAIELFHEMCNSGIRPTKSSVISLLSAC 665 (781)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 665 (781)
.+.+... . +-.+|+--.-.+...+.++ ++++.++++.+.. .-|...|+.....+
T Consensus 150 k~L~~dp--k---------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 150 GSLLPDP--K---------------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHTSSCT--T---------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhCC--C---------------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4443221 1 1224444444444444444 6666666666532 22444555555555
Q ss_pred cccCc-------HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 666 SHSGL-------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 666 ~~~~~-------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.+.++ ++++++.+++++.. .|+ ...|..+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 55443 45666666665543 444 3444444444444443
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=2.6e-06 Score=71.82 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKL-------EPENVGYY----ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|.....++.+.|++++|+..+++++++ +|+++.+| +.+|.++...|++++|++-+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 6777777788888888888888888888 99999999 99999999999999998754
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=5.3e-06 Score=82.57 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS------------------SVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
...|..+...+.+.|++++|+..|++... +.|+.. .|..+..++.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566777777788888888888888776 456543 4444444555555555555555555
Q ss_pred HHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHH-HhcCCcHHHHHHHHHHhccCCCCC
Q 035828 682 LEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSAC-SHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 682 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
++. .|+ ...|..+..+|...|++++|++.++++ ...|+.. .+..+.... ...+..+.+...+.++++..|+++
T Consensus 257 l~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 257 LTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 433 333 344555555555555555555555544 2333222 222222221 123444455555555555554443
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=2.5e-05 Score=64.99 Aligned_cols=115 Identities=11% Similarity=-0.007 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
..|..+...+...|++++|++.+++..... +.+...+..+...+...|++++|.+.+++..+. .|+ ...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHH
Confidence 367778888899999999999999998742 336678888999999999999999999999865 555 578899999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCc
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDT 739 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 739 (781)
.+.+.|++++|.+.+++. ...| +...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999886 3444 455677777777777765
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=5.5e-05 Score=80.58 Aligned_cols=135 Identities=8% Similarity=-0.018 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccC--cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC-ChHHH
Q 035828 636 GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSG--LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG-KLQEA 710 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A 710 (781)
++++++.++.+.+ ..| +..+|..-.-.+.+.+ +++++++.++++++. +|. ...|..-..++.+.| .++++
T Consensus 89 ~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 89 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHH
Confidence 8899999999988 455 5557777777777888 779999999999876 665 577887777888888 89999
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhc--------------CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHH--------------GDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
++.++++ ...| +...|......+.+. +.++++.+.+++++..+|++..+|+.+++++.+.|+.+
T Consensus 164 l~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 9999887 5555 455677776666553 55799999999999999999999999999999998855
Q ss_pred h
Q 035828 775 D 775 (781)
Q Consensus 775 ~ 775 (781)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 4
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=1e-06 Score=72.16 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=83.6
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|++++|...|++.++...-.|+ ...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999998743000354 578889999999999999999999887 4445 4567888888899999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 744 QVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 744 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..++++++..|+++........+....+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766666666665554
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=1.7e-06 Score=70.79 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=67.4
Q ss_pred hcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 632 YHGKGWEAIELFHEMCNSGI-RP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
..|++++|+..|++..+.+. .| +...+..+..++...|++++|...+++.++. .|+ ...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHH
Confidence 46889999999999988431 23 3457888888999999999999999999866 665 578888999999999999
Q ss_pred HHHHHHHhC-CCCCCc
Q 035828 709 EAYEFIKNL-PIQPKP 723 (781)
Q Consensus 709 ~A~~~~~~~-~~~p~~ 723 (781)
+|++.+++. ...|+.
T Consensus 79 ~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 79 QGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 999988876 333443
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=3e-06 Score=74.15 Aligned_cols=83 Identities=11% Similarity=-0.049 Sum_probs=64.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC-chHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV-GYYISLSNMY 767 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 767 (781)
...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 357888888888999999998888776 4444 455788888888899999999999999999999988 5666676665
Q ss_pred HhcCCh
Q 035828 768 VALGRW 773 (781)
Q Consensus 768 ~~~g~~ 773 (781)
...++.
T Consensus 143 ~~~~~~ 148 (162)
T 3rkv_A 143 ERRAEK 148 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=1.6e-06 Score=79.08 Aligned_cols=114 Identities=13% Similarity=0.025 Sum_probs=85.9
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-c----------------c
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-P----------------G 724 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----------------~ 724 (781)
.....|+++++.+.++...+. .+. ...+..+...+.+.|++++|++.++++ ...|+ . .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334456666666666543322 222 456778899999999999999999876 33332 2 5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..+...+...|++++|+..++++++.+|+++.++..+|.+|...|++++|++.+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77888888999999999999999999999999999999999999999999998865
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=3.4e-06 Score=71.09 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-------------cchHHHHHHHhhhcCChHHHHHHHHhC-CC---
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-------------TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI--- 719 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 719 (781)
.+......+...|++++|...|++.++- .|+ ...|..+..++.+.|++++|+..+++. ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3444455566677777777777777654 333 127788888888888888888877665 34
Q ss_pred ----CCC-cchH----HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 720 ----QPK-PGVW----GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 720 ----~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.|+ ...| .....++...|++++|+..|++++++.|++..+...+..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 675 4467 8888999999999999999999999999988876655443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=3.1e-06 Score=74.03 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIR-PT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
.++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|.+.+++..+.....++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666666677777777777777766542100 11 125555666666666777777666665543211111 2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
..+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555555566666666665555443 0000 1123344444444555555555555555443
No 183
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.02 E-value=5.2e-05 Score=74.63 Aligned_cols=431 Identities=10% Similarity=0.080 Sum_probs=239.3
Q ss_pred CCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 035828 6 HLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQ 85 (781)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 85 (781)
.+.+|+.|.++..+.+++.+|.+-| +...|+..|..+|.+..+.|.+++-..++...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4568999999999999999998876 4566777899999999999999999998887766533 44555678889999
Q ss_pred cCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCC------------------------CCCeee
Q 035828 86 MNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMH------------------------CADTVS 141 (781)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~ 141 (781)
.++..+-.+++. .|+..-...+-.-|...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 988777665543 3666566666666777777777777776653 237788
Q ss_pred hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 035828 142 WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMY 221 (781)
Q Consensus 142 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 221 (781)
|-.+-.+|...+.+.-|...--.+.- .+.-+..++..|...|.+++...+++... |.+. ....+|+-|--.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLER-AHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc-hhHHHHHHHHHHH
Confidence 88888888888888877655433332 22233456667778888887777776655 3222 2366788887777
Q ss_pred HhcCChhHHHH---Hh-ccCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 222 SQCGDIEAAER---AF-WGMTCK-------DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 222 ~~~g~~~~a~~---~~-~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
++- +.++..+ +| .++.-| ....|.-++-.|++-.+++.|... |.++ .|+......+.....+
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h---~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH---PTDAWKEGQFKDIITK 346 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC---HHHHCCGGGGTTTGGG
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC---ChhhccHHHHHHHHHH
Confidence 775 3333333 33 223222 445677777777777777655432 2211 1111111111111122
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC------------CCCeeeHHHHHHHHHHH
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP------------MNDLVSWNSMISGLFKE 358 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~ll~~l~~~ 358 (781)
..+.+. +-..+..-+.-.+...+-|+.++...=|...+.++|++... ..+....|.-+..++-+
T Consensus 347 VaN~Ei----yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 347 VANVEL----YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp CSCSHH----HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred cchHHH----HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 222221 11111111222233344444444444444444444443322 13444444444433322
Q ss_pred HHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccH
Q 035828 359 MLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCW 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 438 (781)
.-|..++...+..+..-..+..|.++-. .+-...-.+-...|.+.+++.++..+.++= ..|
T Consensus 423 ------EEDy~~LR~SId~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD------kly 483 (624)
T 3lvg_A 423 ------EEDYQALRTSIDAYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKD------SLY 483 (624)
T ss_dssp ------TTCCHHHHHTTSSCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT------CCT
T ss_pred ------hhhHHHHHHHHHHhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhc------ccH
Confidence 3455566666666666666666555411 011111112223455555666555443221 122
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH
Q 035828 439 NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE 489 (781)
Q Consensus 439 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 489 (781)
.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++.
T Consensus 484 kDAietAa~S~~~elaeeLL~yFv~~g----~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 484 KDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp TGGGTTTTTCCCTTHHHHHHHHHHHHC----STHHHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHhhccChHH
Confidence 333344445566666666666665554 33445455555544444333
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=5.3e-06 Score=72.58 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+..+..++.+.|++++|+..++++++++|+++.+++.+|.+|...|++++|++.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence 3468888888999999999999999999999999999999999999999999998764
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.3e-05 Score=79.76 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc------------------chHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET------------------EHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+..+...+.+.|++++|...|++.++. .|+. ..|..+..+|.+.|++++|++.++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667788899999999999999998765 5553 27899999999999999999999887
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH-hcCChhhHHhhc
Q 035828 718 -PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV-ALGRWKDAVEIG 780 (781)
Q Consensus 718 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~l~ 780 (781)
...| +...+..+..++...|++++|...++++++++|+++.++..|+.+.. ..++.++|.+++
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 56688999999999999999999999999999999999999999844 456666766654
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=5.7e-06 Score=69.08 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=78.0
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC-------CchHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN-------VGYYIS 762 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 762 (781)
..+..++..+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45778889999999999999999887 3334 56678888888999999999999999999998876 888999
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
++.+|...|++++|++.+
T Consensus 85 la~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFY 102 (131)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 999999999999998865
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.95 E-value=0.0014 Score=63.71 Aligned_cols=130 Identities=11% Similarity=0.071 Sum_probs=78.6
Q ss_pred hHHHHHHhhhcC---CCChhhHHHHHHHHHhC-C-ChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH--------
Q 035828 522 IKSASTVFESCY---NCNLCTWNCMISAFSQN-K-AEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR-------- 586 (781)
Q Consensus 522 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-------- 586 (781)
+++++++++.+. ..+..+|+.-...+... + ++++++++++++ ...| |...++.-.-.+.+.+.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 555555555544 22334555544444443 4 566667766666 5444 3444443333333333333
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK-------GWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
++.+..+.+++..+ .|..+|+-....+.+.++ ++++++.++++.. ..| |...|
T Consensus 185 eELe~~~k~I~~dp-----------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW 245 (349)
T 3q7a_A 185 SELDWCNEMLRVDG-----------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAW 245 (349)
T ss_dssp HHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHH
Confidence 77777777777654 377889888888888876 6889999999887 455 55667
Q ss_pred HHHHHHhcccCc
Q 035828 659 ISLLSACSHSGL 670 (781)
Q Consensus 659 ~~l~~~~~~~~~ 670 (781)
+.+-..+.+.|+
T Consensus 246 ~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 246 NYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 665555554443
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=2e-05 Score=68.65 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----c
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK----P 723 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~ 723 (781)
.++..+...+...|++++|...+++.++...-.++ ...+..+...+...|++++|.+.+++. . ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 47778888889999999999999998765222222 257889999999999999999998875 1 1111 3
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEP------ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+..+...+...|++++|...++++.+..+ ..+..+..++.+|...|++++|.+.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4677788888999999999999999997742 23456889999999999999998765
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=6e-05 Score=78.44 Aligned_cols=158 Identities=8% Similarity=-0.056 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHc---CCCCC-cc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEY---DVRPE-TE 692 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~ 692 (781)
++..+...|...|++++|.+.+..+...- -.++. .+.+.+...+...|+.++|.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36678888999999999999999887521 11222 233344445566889999999998876532 22333 36
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-----CC--CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC---CC----C
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-----PI--QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP---EN----V 757 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~ 757 (781)
++..++..|...|++++|.++++++ +. +| ...++..+++.|...|++++|...++++....+ ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999998866 11 12 234678888889999999999999999987643 22 2
Q ss_pred chHHHHHHHHHhcCChhhHHhh
Q 035828 758 GYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~l 779 (781)
..+..++..+...|++++|...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3466788889999999999764
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=2.8e-05 Score=59.75 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=66.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..+...+...|++++|++.+++. ...| +...+..+...+...|++++|...++++.+++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 356677778888888888888888766 3334 45577888888899999999999999999999999999999999998
Q ss_pred hcC
Q 035828 769 ALG 771 (781)
Q Consensus 769 ~~g 771 (781)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.85 E-value=0.0011 Score=64.15 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=148.9
Q ss_pred hcCChH-HHHHHhhhcCCCCh---hhHHHHHHHHHhCCC----------hhHHHHHHhhc-CCCC-CHhHHHHHHHHhcc
Q 035828 518 RCRDIK-SASTVFESCYNCNL---CTWNCMISAFSQNKA----------EVRALELFRHL-EFEP-NEISIVSILSACTQ 581 (781)
Q Consensus 518 ~~g~~~-~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 581 (781)
+.|.++ +|+.+++.+...|+ .+|+.--..+...+. +++++.+++.+ ...| +..+++.---.+..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 455554 67888877764333 455543333322222 56778888877 5555 44555544444444
Q ss_pred cC--chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHH
Q 035828 582 LG--VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK-GWEAIELFHEMCNSGIRPTKSSV 658 (781)
Q Consensus 582 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~ 658 (781)
.+ +++++..+++.+.+.... +-.+|+--.-.+...|. ++++++.++++.+.. +-|...|
T Consensus 121 l~~~~~~~EL~~~~k~l~~dpr-----------------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADER-----------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 55 478888888888875543 22356666666667777 589999999998843 2255566
Q ss_pred HHHHHHhccc--------------CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc-----------CChHHHHH
Q 035828 659 ISLLSACSHS--------------GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS-----------GKLQEAYE 712 (781)
Q Consensus 659 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~ 712 (781)
+.....+... +.++++++.+++.+.. .|+ ...|..+-..+.+. +.++++++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 6555444433 4678999999998865 676 45555444444443 45788888
Q ss_pred HHHhC-CCCCCcchHHHHHHHH-----HhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 713 FIKNL-PIQPKPGVWGAMLSAC-----SHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 713 ~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.++++ ...|+. .|.-+..++ ...|..++...++.++.+++|-....|..+...+.-
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~ 321 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 321 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 88877 566765 343332222 246788899999999999999999999988776554
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=5.5e-05 Score=78.72 Aligned_cols=153 Identities=10% Similarity=-0.011 Sum_probs=115.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-C---------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-T---------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET 691 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 691 (781)
..+.+.|++++|++.|.+..+..-.. + ...+..+...|...|++++|.+.++.+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 44577899999999999998743221 1 1247788999999999999999999987653333332
Q ss_pred ----chHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccC------
Q 035828 692 ----EHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLE------ 753 (781)
Q Consensus 692 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 753 (781)
.+...+...+...|++++|++++++. +..+. ...+..++..+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999887765 22222 3467788888999999999999999988652
Q ss_pred CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 754 PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 754 p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|....++..++.+|...|++++|..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 334457889999999999999998765
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=2.9e-05 Score=61.05 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=52.2
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
...+..+..+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...+++++++.|. +......+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 456667777777777777777777765 3333 3446667777777777777777777777776653 34444455555
Q ss_pred HHhcCC
Q 035828 767 YVALGR 772 (781)
Q Consensus 767 ~~~~g~ 772 (781)
+...+.
T Consensus 87 l~~~~~ 92 (100)
T 3ma5_A 87 KLKAEG 92 (100)
T ss_dssp HHHHHT
T ss_pred HHHccc
Confidence 554443
No 194
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.78 E-value=0.00035 Score=67.69 Aligned_cols=130 Identities=9% Similarity=-0.010 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccC--cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC-hHHH
Q 035828 636 GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSG--LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK-LQEA 710 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-~~~A 710 (781)
+++++.+++.+.. ..| +..+|+.-...+...+ ++++++++++++++. .|. ...|+.-..++...|. ++++
T Consensus 90 l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 90 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 5778888888877 344 5556666665665656 478899999988865 554 4667666666777777 5888
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhc--------------CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHH--------------GDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++.++++ ...| |...|+.....+.+. +.++++.+.+++++..+|+|..+++.+..++...
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 8887776 3344 455676666665554 4578999999999999999999999888887766
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.76 E-value=2.6e-05 Score=81.61 Aligned_cols=125 Identities=11% Similarity=-0.003 Sum_probs=97.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS 704 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 704 (781)
...+...|++++|++.+++..+ ..| +...+..+..++...|++++|.+.+++.++. .|+ ...|..+..+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3345678999999999999988 455 4678999999999999999999999999854 676 57899999999999
Q ss_pred CChHHHHHHHHhC-CCCC-CcchHHHHHHH--HHhcCCcHHHHHHHH-----------HHhccCCCC
Q 035828 705 GKLQEAYEFIKNL-PIQP-KPGVWGAMLSA--CSHHGDTKMGKQVAE-----------LLFKLEPEN 756 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~ 756 (781)
|++++|++.++++ ...| +...+..+..+ +.+.|++++|++.++ ++.+..|+.
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999887 3444 34456666555 778899999999999 777776653
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=6.3e-05 Score=77.99 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=71.8
Q ss_pred hcccCcHHHHHHHHHHhHHHcCC-----CCC-cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDV-----RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGA 728 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~-----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 728 (781)
+...|++++|..++++.++...- .|+ ..+++.|+.+|...|+|++|..++++. ...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666665544211 122 356666777777777777776665544 12333 235677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCchH---HHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKL-----EPENVGYY---ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~---~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|...|++++|+.++++++++ +|++|.+. ..|..++..+|++++|..++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777753 56666654 45667777778888877664
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00014 Score=75.83 Aligned_cols=126 Identities=8% Similarity=0.017 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
.|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 577788889999999999999999987 3443 478889999999999999999999999865
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH-HHHHHHhcc
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK-QVAELLFKL 752 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 752 (781)
.|+ ...|..+..+|...|++++|+..|+++ ...| +...+..+...+.+.|+.++|. ..+.+++..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 665 688999999999999999999999987 5666 4557788888888888888776 455666544
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=3.7e-05 Score=62.38 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=74.4
Q ss_pred HHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHH
Q 035828 673 EGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELL 749 (781)
Q Consensus 673 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (781)
+|.+.+++.+ ...|+ ...+..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788776 34665 578889999999999999999999876 3444 4557888888899999999999999999
Q ss_pred hccCCC--CCchHHHHHHHHHhcCCh
Q 035828 750 FKLEPE--NVGYYISLSNMYVALGRW 773 (781)
Q Consensus 750 ~~~~p~--~~~~~~~l~~~~~~~g~~ 773 (781)
.++.|+ +......+...+...|+.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhccc
Confidence 998875 344455565555554443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=6.2e-05 Score=63.26 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 707 (781)
..+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|...|.. .+++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 3456788888888888877 33333 666677777788888888887653 345667778888877 7788
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccC
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 753 (781)
++|++++++.-...++..+..+...+.. .+|.++|..+++++.+.+
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888877333556667777777777 788888888888887774
No 200
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.61 E-value=2.3e-05 Score=77.04 Aligned_cols=399 Identities=16% Similarity=0.156 Sum_probs=227.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
..+|..|-.+....|++.+|++-|-+ ..|+..|..+|....+.|.+++-+..+.-.++.. -.| ..=+.|+-++++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccc--ccHHHHHHHHHh
Confidence 56788888888888888888765543 4577788899999999999999888877665532 333 344578888888
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchh
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFST 370 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 370 (781)
.++..+.++++. .|+..-...+-+-|...|.++.|.-+|..+..
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------------------------- 172 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------- 172 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------------------------
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------------------------
Confidence 888887766653 46666666777778888888888888877765
Q ss_pred hhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCC
Q 035828 371 LLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 450 (781)
+..+-..+...+++..|.+ . .++..++.+|..+-.+|...+.
T Consensus 173 ~akLAstLV~L~~yq~AVd-----------------------------------a---ArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVD-----------------------------------G---ARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTT-----------------------------------T---TTTCCSSCSHHHHTHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------------------H---HHhcCChhHHHHHHHHHhCchH
Confidence 2223333333333332221 1 1123578888888888888887
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhh
Q 035828 451 FQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFE 530 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 530 (781)
+.-|...--.+. +.||.- ..++..|.+.|.+++-+.+++
T Consensus 215 frLAqicGLniI----vhadeL-------------------------------------~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 215 FRLAQMCGLHIV----VHADEL-------------------------------------EELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp TTTTTHHHHHHH----CCSSCC-------------------------------------SGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHhcchhc----ccHHHH-------------------------------------HHHHHHHHhCCCHHHHHHHHH
Confidence 776644433333 222211 124445666677776666666
Q ss_pred hcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH
Q 035828 531 SCY---NCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS 607 (781)
Q Consensus 531 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 607 (781)
.-. ....-.++.|.-.|++- ++++-++.++....+-|.. -++++|..
T Consensus 254 aglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip---KviracE~-------------------------- 303 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP---KVLRAAEQ-------------------------- 303 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT---TTHHHHTT--------------------------
T ss_pred HHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH---HHHHHHHH--------------------------
Confidence 443 34445666666666555 4555555555441111111 13344433
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC
Q 035828 608 SALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV 687 (781)
Q Consensus 608 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 687 (781)
...|.-++-.|..-.+++.|... |.+ ..|+.+-...+.....+..+.|--.+...=-+ ..
T Consensus 304 ------------ahLW~ElvfLY~~ydE~DnA~lt---Mi~--h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL---~e 363 (624)
T 3lvg_A 304 ------------AHLWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF 363 (624)
T ss_dssp ------------TTCHHHHHHHHHHHTCHHHHHHT---TTS--CHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHT---TS
T ss_pred ------------HhhHHHHHHHHhcchhHHHHHHH---HHh--CChhhccHHHHHHHHHHcchHHHHHHHHHHHH---Hh
Confidence 33577777777888888877543 332 12233323333334444444443222222112 22
Q ss_pred CCCcchHHHHHHHhhhcCChHHHHHHHHhCC------------CCCCcc-hHHHHHHHHHhcCCcHHHHHHHH-------
Q 035828 688 RPETEHHVCIVDMLGRSGKLQEAYEFIKNLP------------IQPKPG-VWGAMLSACSHHGDTKMGKQVAE------- 747 (781)
Q Consensus 688 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~------- 747 (781)
.|. ..+.|+.++...=+..++.+++++.+ .+-|.. +-.++-..+....|++.-..-.+
T Consensus 364 ~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~ 441 (624)
T 3lvg_A 364 KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDN 441 (624)
T ss_dssp CCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCT
T ss_pred ChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccH
Confidence 343 34555555555556666666666652 122333 33444444566777665432211
Q ss_pred --HHhccC-CCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 748 --LLFKLE-PENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 748 --~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
-+.++. .+-...-.--+.+|.+.++|+++++|.|
T Consensus 442 i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 442 ISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp THHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 011111 1112223334567889999999998865
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=6.5e-05 Score=75.53 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=77.4
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-C----------------CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-P----------------IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
.+..+...+.+.|++++|++.++++ . ..| +...|..+...+.+.|++++|+..++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3667888999999999999998776 2 233 345788889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+++.++..++.+|...|++++|++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999865
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.00024 Score=59.62 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=87.6
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMG 742 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 742 (781)
..+|.++|.++|++..+. + .|. .. |...|...+..++|++++++.-...++..+..+...+.. .+|+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 346889999999998765 4 333 23 888888888999999999987444566778888888887 7899999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHh----cCChhhHHhhc
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
..+++++.+. .++.++..|+.+|.. .++.++|++.+
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 9999999887 678899999999999 89999998765
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.00015 Score=55.48 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=37.9
Q ss_pred cchHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 691 TEHHVCIVDMLGRSGK---LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
+..+..+..++...++ .++|..++++. ...|+ +.....+...+...|++++|+..|+++++.+|+++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4555556665543333 56666666655 34443 33444555556666666666666666666666633
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=8.6e-05 Score=62.41 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=60.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcH----------HHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLV----------DEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
.+.+.+++|++.+++..+ ..| +...|..+..++...+++ ++|+..|++.++. .|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 455566666666666665 334 444555555555555443 3555555555533 554 34555555
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.+|...|++ .|+.. ...|++++|++.++++++++|+++.....+-
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 555554432 12210 1126888888888888888888775554443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00043 Score=71.72 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=95.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC-cchH
Q 035828 628 SAYGYHGKGWEAIELFHEMCNS---GIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE-TEHH 694 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~ 694 (781)
..+...|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++.++.+ ...|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887652 13333 2489999999999999999999999976542 22344 4789
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC--------C-CCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL--------P-IQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
+.|+..|...|++++|..+++++ | ..|+.. ....+..++...|.+++|+..+.++.+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776 2 334333 3445555566789999999999998764
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=8.8e-05 Score=59.52 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
..|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|.+.+++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 22 33444445555555555555555555544
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.38 E-value=4e-05 Score=64.42 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=64.9
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (781)
+.+.+++|.+.++..++. .|+ ...|..+..++.+.++++.+.+.++ .+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHH
Confidence 345566677777666644 554 4566666666666665554443321 37899999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC-----------ChhhHHhhc
Q 035828 746 AELLFKLEPENVGYYISLSNMYVALG-----------RWKDAVEIG 780 (781)
Q Consensus 746 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~l~ 780 (781)
++++++++|+++.+++.+|.+|...| ++++|++.+
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence 99999999999999999999999875 899998764
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.37 E-value=0.0011 Score=70.58 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=109.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCc----------HHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGL----------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.....++|++.++++.. +.|+.. .|+.--.++...|+ ++++++.++++++. .|. ..+|..-..
T Consensus 41 ~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w 115 (567)
T 1dce_A 41 AGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCW 115 (567)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 33456788999999998 677554 56655555555555 89999999999876 676 478888888
Q ss_pred HhhhcC--ChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 700 MLGRSG--KLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 700 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++.+.| ++++|++.++++ ...| +...|..-...+.+.| .++++.+.++++++.+|.+..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 888889 779999999988 4444 5668888888888888 899999999999999999999999999998874
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.00032 Score=56.71 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHH
Q 035828 637 WEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 637 ~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
++|++.|++..+. .| +...+..+...+...|++++|...+++.++. .|+ ...|..+..+|...|++++|...+
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678888888873 44 5678888888999999999999999998865 565 578889999999999999999988
Q ss_pred HhC
Q 035828 715 KNL 717 (781)
Q Consensus 715 ~~~ 717 (781)
++.
T Consensus 77 ~~a 79 (115)
T 2kat_A 77 ESG 79 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.00037 Score=53.24 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999998764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0015 Score=66.51 Aligned_cols=95 Identities=6% Similarity=-0.026 Sum_probs=57.6
Q ss_pred cCcHHHHHHHHHHhHHHcC--CCCC----cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHHHHH
Q 035828 668 SGLVDEGLQYYNNMLEEYD--VRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGAMLS 731 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 731 (781)
.|++++|..++++.++... +.|+ ..+++.|..+|...|+|++|+.++++. ...|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666666554311 1222 256666777777777777777666554 13333 235677777
Q ss_pred HHHhcCCcHHHHHHHHHHhcc-----CCCCCchHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKL-----EPENVGYYIS 762 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 762 (781)
.|...|++++|+.++++++++ +|++|.+-..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 777777777777777777753 5777755443
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.03 E-value=0.00081 Score=52.53 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+...+..+..++...|++++|...|++.++. .|+ ...|..+..+|...|++++|++.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666777777777777777777777654 454 466777777777777777777776654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.00 E-value=0.002 Score=50.13 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-Ccc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
.+..+.+.|++++|++.++++ ...| +.. .+..+...+...|++++|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344455555666665555554 2233 233 455555555566666666666666666666666555
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.003 Score=64.46 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=67.1
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcC--CCCC----cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchH
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYD--VRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVW 726 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~ 726 (781)
..+...|++++|..++++.++... +.|+ ..+++.|+.+|...|+|++|+.+++++ +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 344556777777777777664321 1222 356777777888888888887776654 13333 3357
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCchHHHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKL-----EPENVGYYISL 763 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l 763 (781)
+.+...+...|++++|+.++++++++ +|++|.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 77788888888888888888888764 67777665543
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.0028 Score=49.76 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNLP---------IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
-...++..+.+.|+++.|..+++.+- -.+...++..+..++.+.|+++.|...++++.++.|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34456677777777777777766541 112345788888999999999999999999999999998887777
Q ss_pred H
Q 035828 764 S 764 (781)
Q Consensus 764 ~ 764 (781)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 6
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.0031 Score=61.20 Aligned_cols=122 Identities=12% Similarity=-0.027 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcc---cC-----cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 634 GKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSH---SG-----LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
....+|+.+|++..+ ..|+. ..|..+..++.. .+ ........++........+.++.+|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 345889999999998 67864 344433333321 11 11111112221111101133467888887777788
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|++++|+..++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999987 4557776777777788889999999999999999999875
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0011 Score=51.51 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=48.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVG-YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..+...|++++|...++++.+.+|+++. .+..+|.+|...|++++|++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~ 58 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455677899999999999999999999999 9999999999999999999865
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.00075 Score=68.67 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHhC------C---CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCc---hHHHHH
Q 035828 703 RSGKLQEAYEFIKNL------P---IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKL-----EPENVG---YYISLS 764 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~------~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~ 764 (781)
..|++++|+.++++. . ..|+ ..+++.+..+|...|++++|+.+++++++. +|++|. .+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999887765 1 2333 347899999999999999999999999864 466665 488899
Q ss_pred HHHHhcCChhhHHhhc
Q 035828 765 NMYVALGRWKDAVEIG 780 (781)
Q Consensus 765 ~~~~~~g~~~~A~~l~ 780 (781)
.+|..+|++++|+.++
T Consensus 390 ~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHH
Confidence 9999999999999876
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.63 E-value=0.0068 Score=58.89 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHhc--cc---CcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhh---cC-C-------hHHHHHH
Q 035828 651 IRPTKSSVISLLSACS--HS---GLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGR---SG-K-------LQEAYEF 713 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g-~-------~~~A~~~ 713 (781)
.+.+...|...+++.. .. .+..+|..+|++.++. .|+. ..|..+..+|.- .+ . +..|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776543 22 3468999999999866 8883 556655554421 11 1 1122222
Q ss_pred HHhCC-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 714 IKNLP-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 714 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+. .+.++..+..+...+...|+++.|...+++++.++|+ ...+..+|+++.-.|++++|.+.+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22332 2445667777777777789999999999999999974 667889999999999999998764
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.57 E-value=0.0042 Score=51.51 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=51.9
Q ss_pred HHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CcchHHHHHHHHHhcCCcHHHHH
Q 035828 672 DEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG---KLQEAYEFIKNL-PIQ-P--KPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
..+.+.|.+..+. + .++..+...+.+++++.+ +.++++.+|++. ... | +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444332 1 244555555666666655 444666665554 222 3 23344455556677777777777
Q ss_pred HHHHHhccCCCCCchHHHHHH
Q 035828 745 VAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 745 ~~~~~~~~~p~~~~~~~~l~~ 765 (781)
.++++++.+|++..+....-.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHH
Confidence 777777777777766655433
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.41 E-value=0.0031 Score=64.28 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHhhhcCChHHHHHHHHhC------CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCc---h
Q 035828 698 VDMLGRSGKLQEAYEFIKNL------PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKL-----EPENVG---Y 759 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~ 759 (781)
+..+.+.|++++|++++++. ...|+ ..+++.++.+|...|++++|+.+++++++. .|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999998765 13333 346888999999999999999999999864 466665 4
Q ss_pred HHHHHHHHHhcCChhhHHhhc
Q 035828 760 YISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+++||.+|..+|++++|+.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 778999999999999999875
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.27 E-value=0.074 Score=42.12 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=86.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.-.|..++..++..+.... .+..-+|-+|--...+-+-+-..+.++.+-+-+.+.+ -.-.-.++.+|.+.|...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~-C~NlKrVi~C~~~~n~~s-- 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK-CQNLKSVVECGVINNTLN-- 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG-CSCTHHHHHHHHHTTCCC--
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh-hhcHHHHHHHHHHhcchH--
Confidence 3468889999998888752 3444566666555556677777777777633322221 123344555555555433
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 711 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
...+.-+..+..+|..++-.+++..+....|.+|.....++.+|.+-|+..+|.++++
T Consensus 92 -------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 92 -------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3444556667788888888888888777777778888888888888888888887753
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.08 Score=59.89 Aligned_cols=191 Identities=10% Similarity=0.049 Sum_probs=94.3
Q ss_pred hcCChHHHHH-HhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 518 RCRDIKSAST-VFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 518 ~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
..+++++|.+ ++..++..+ ....++..+.+.|..++|+++.+. |.. -+......|+++.|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~----~~~-----~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD----QDQ-----KFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC----HHH-----HHHHHHHHTCHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC----cch-----heehhhhcCCHHHHHHHHHhh-
Confidence 4566676666 543333011 225555666666766666655431 110 122234456666666654321
Q ss_pred HhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 035828 597 HLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQ 676 (781)
Q Consensus 597 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 676 (781)
.+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 679 ---------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 679 ---------------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 1223577777777777888777777777653 2333333334555554444
Q ss_pred HHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 677 YYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 677 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
+.+..... + -+..-..+|.+.|++++|++++.+ .+++++|..+.++ ..|..
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~ 779 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGD 779 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCH
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCCh
Confidence 43333221 1 123333344455555555555443 3455555555443 23322
Q ss_pred ---CchHHHHHHHHHhcCChhhHHhh
Q 035828 757 ---VGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 757 ---~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+.........+...|+.+.|..+
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred HHHHHHHHHHHHHHHhccchhHHHhh
Confidence 23344445555566665555443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.19 Score=56.75 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788888888877664 3457888888888888888887777655
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.11 E-value=0.024 Score=43.00 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHhcCC---cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 722 KPGVWGAMLSACSHHGD---TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..+..+..++...++ .++|..+++++++++|+++.+...+|..+++.|++++|++.|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444433322 455555555555555555555555555555555555555544
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.97 E-value=0.77 Score=48.78 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 634 GKGWEAIELFHEMCNSG-IRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788999998886543 322221 3333444444555356666777665432 34433444555556688999999
Q ss_pred HHHHHhCCCCC-C-cchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 711 YEFIKNLPIQP-K-PGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 711 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.+.|+.+...+ + ..-.--+.+++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999985433 2 22223345566778999999999999875
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.058 Score=42.88 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CcchHHHHHHHHHhcCCcHHH
Q 035828 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE---AYEFIKNL-PIQ-P--KPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 742 (781)
....+.+.|++.... + .|+..+-..+.+++.++.+..+ ++.++++. ... | .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555443 2 3666777778888888876665 77777776 222 3 222345566678899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH
Q 035828 743 KQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.+..+.+++..|++..+..+...+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998887765443
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.081 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCC--CcchHHHHHHHhhhcCChHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRP--ETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 709 (781)
....+.+-|.+..+.|. ++..+...+..++.+.+ +.+++..++++..+. . .| ....+..|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 44556677777666654 67777777888888877 677999999999887 2 36 25777888899999999999
Q ss_pred HHHHHHhC-CCCCCcchHHHH
Q 035828 710 AYEFIKNL-PIQPKPGVWGAM 729 (781)
Q Consensus 710 A~~~~~~~-~~~p~~~~~~~l 729 (781)
|.+.++.+ ..+|+..-...+
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 99999987 677865544444
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.23 E-value=0.019 Score=44.90 Aligned_cols=57 Identities=12% Similarity=-0.048 Sum_probs=48.4
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLE-------PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+-.++..+...|+++.|..+++++.+.. +..+.++..|+.+|.+.|++++|+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345678888999999999999999999863 345667999999999999999998764
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.21 Score=53.96 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
-+.-|...|+++.|..+.+++....|.+..+|..|+.+|.+.|+|+.|+=
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 34556778999999999999999999999999999999999999999974
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.15 E-value=0.26 Score=45.84 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhccc-----CcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhc
Q 035828 635 KGWEAIELFHEMCNSGIRPT---KSSVISLLSACSHS-----GLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRS 704 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 704 (781)
....|...+++..+ +.|+ ...|..|...|... |+.++|.+.|++.++- .|+ ..++....+.+++.
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHh
Confidence 45678888888888 7787 55788888888774 9999999999999855 774 67888899999885
Q ss_pred -CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 705 -GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 705 -g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|+.++|.+.+++. ..+|.......+. ..+..++|..+++++-
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHH----HHHHHHHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHH----HHHHHHHHHHHHHHhH
Confidence 9999999999886 3444421112222 2223456666665543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.74 E-value=0.067 Score=49.67 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhh-----cCChHHHHHHHHhC-CCCCC--cchHHHHHHHHHh-cC
Q 035828 670 LVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGR-----SGKLQEAYEFIKNL-PIQPK--PGVWGAMLSACSH-HG 737 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g 737 (781)
....|...+++.++ +.|+ ...|..+...|.. -|+.++|.+.|++. .+.|+ ..++......++. .|
T Consensus 178 ~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777887764 4887 5689999999988 49999999999987 56774 5667777777777 59
Q ss_pred CcHHHHHHHHHHhccCCCC
Q 035828 738 DTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~ 756 (781)
+++.|.+.+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999998874
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.38 E-value=0.11 Score=42.31 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhcccCcH------HHHHHHHHHhHHHcCCCCCc-chHHHHHH------HhhhcCChHHHHHHHHhC-CC
Q 035828 654 TKSSVISLLSACSHSGLV------DEGLQYYNNMLEEYDVRPET-EHHVCIVD------MLGRSGKLQEAYEFIKNL-PI 719 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~-~~ 719 (781)
|..+|-..+.-..+.|+. ++..++|++.... ++|+. ..+...|. .+...++.++|.++++.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566888888888888998 8888999988765 66652 22222221 123457888888888877 11
Q ss_pred CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 720 QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 720 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.. =+.+|.....-..++|+.+.|.+++.+++...|.+...+-.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 11 14566666666778999999999999999988876554443
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.38 E-value=2.5 Score=33.74 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=62.2
Q ss_pred cCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 519 CRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 519 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
+|++....+.+-.+-. +....+..+..+...|+-++-.+++..+ + .+|+...+..+..+|.+.|+..++.+++.+.-
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4444444444433322 2224556678888999999999999995 4 88888999999999999999999999999998
Q ss_pred HhCCC
Q 035828 597 HLGFQ 601 (781)
Q Consensus 597 ~~~~~ 601 (781)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88875
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.33 E-value=3.4 Score=35.19 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHH
Q 035828 411 HMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 490 (781)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3456788999998888777 4567899999999999999999998887644 22333334445555555
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC
Q 035828 491 KSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY 533 (781)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 533 (781)
.++-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555444444431 2333444555677777777665443
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.27 E-value=0.19 Score=40.04 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 689 PETEHHVCIVDMLGRSGKL---QEAYEFIKNL-PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|++.+--.+++++.++.+. .+++.++++. +..|. ...+--+.-++.+.|+++.|.+..+.+++..|++..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4444444555555555533 2344555443 22231 2234444555667777777777777777777777666554
Q ss_pred HH
Q 035828 763 LS 764 (781)
Q Consensus 763 l~ 764 (781)
..
T Consensus 118 k~ 119 (134)
T 3o48_A 118 KS 119 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.12 E-value=3.7 Score=34.99 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345678888888887766 34567888888888888888887777765
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.93 E-value=0.6 Score=37.80 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHhhhcCChH---HHHHHHHhC-CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 688 RPETEHHVCIVDMLGRSGKLQ---EAYEFIKNL-PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 688 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+..+--.+.+++.++.+.+ +++.++++. ...|. ....-.+.-++.+.|++++|.+..+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 344445555555555555333 344455444 12221 122334444566777777777777777777777766655
Q ss_pred HHH
Q 035828 762 SLS 764 (781)
Q Consensus 762 ~l~ 764 (781)
+..
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.46 E-value=0.52 Score=39.38 Aligned_cols=120 Identities=22% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-------chHHHHHHHhhhcCChHHHHHHHHhC--
Q 035828 649 SGIRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-------EHHVCIVDMLGRSGKLQEAYEFIKNL-- 717 (781)
Q Consensus 649 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 717 (781)
.|+.|... ++..=+..+...|.++.|.-+...++...+.+|+. .++..+++++...|++.+|...++++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45566443 33334556666777777777766654443333431 35566777777777777777776653
Q ss_pred --CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 718 --PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 718 --~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.-+... ....+. ...... .-.. .+.+.+.-+.++..|.+.|++++|+.++
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCCcccccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1111110 000000 000000 0001 1334456788999999999999999875
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.41 E-value=0.81 Score=36.37 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=66.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHH---HHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCC
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDE---GLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 706 (781)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+. -.|. ......|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666665554 666666667778888775555 99999988754 2252 4677788889999999
Q ss_pred hHHHHHHHHhC-CCCCCcchHHH
Q 035828 707 LQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
|++|.+.++.+ ...|+..-...
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999887 56776543333
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.05 E-value=13 Score=35.22 Aligned_cols=168 Identities=7% Similarity=0.011 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCChhhHHHHHH
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKT----FKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
..|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+-..+.+ .+++..+...++.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 45667777888899999999887655 4456677886665554 44444555 8889888888888
Q ss_pred HhcCccchH-HHHHHHHHHHH----hcC--CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhC--
Q 035828 480 ACGNLELAF-EGKSLHGLALK----SLM--GLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQN-- 550 (781)
Q Consensus 480 ~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-- 550 (781)
.+......+ .-.++.+.+++ .|- .-++.....+...|.+.|++.+|..-|=.....+...+..++.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC
Confidence 776543222 22344444443 222 236778888889999999999998876532222344444444333333
Q ss_pred -CChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 551 -KAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 551 -~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
|...++- ....-+++ -+...+++..|..+++...
T Consensus 181 ~~~~~e~d-----------lf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVA-----------EFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHH-----------HHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHH-----------HHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 4433321 11111222 2335678888888877654
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.40 E-value=15 Score=35.04 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=78.1
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHH----HHHHhhcCCCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLY----FREMGWSGEQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~ 184 (781)
++|.++..-|.+.+++++|.+++- .-...+.+.|....+-++ ++.+.+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777888899999998862 223445667777666554 46677789999998888888888
Q ss_pred hccCChh-----HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 035828 185 ACLGELS-----YGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFW 235 (781)
Q Consensus 185 ~~~~~~~-----~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 235 (781)
......+ -......|-.+.|..+..+......+-..|.+.+++.+|..-|-
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7665422 12334445555553333346666777777888888888877663
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.31 E-value=2.2 Score=35.70 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHhcccCcHHHHHHHHHHhHHHcC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTK-------SSVISLLSACSHSGLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 686 (781)
++-.-+..+...+.++.|+-+.+-+... +..|+. .++..+..++...|++.+|...|++.++...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3445566778889999998777765432 123332 2667778899999999999999999766533
No 244
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.05 E-value=17 Score=33.88 Aligned_cols=210 Identities=8% Similarity=-0.063 Sum_probs=105.9
Q ss_pred hhHHHHHhhcCCchhHHHHhhhhcCCCcc---hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHh
Q 035828 11 TSLLTAYSNVSYFESSLALFYETCNKDVV---TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALT 84 (781)
Q Consensus 11 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~ 84 (781)
+..+....+.|+++....+++....++.. .-.+.+...+..|+.+ +++.+.+.|..++.. -.+.+ ...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 34566667788988888888875544432 1234555666667654 445555666555432 22233 3333
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCCCCCee-------------ehHHHHHHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMHCADTV-------------SWNTIMSGC 149 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~li~~~ 149 (781)
..|+ .++++.+.+.|..++... -.+.+...++.|+.+-+..+++.-..++.. ..+. +...
T Consensus 81 ~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~-L~~A 155 (285)
T 1wdy_A 81 IAGS----VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA-LMDA 155 (285)
T ss_dssp HHTC----HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH-HHHH
T ss_pred HcCC----HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH-HHHH
Confidence 4444 456666667776655322 234455566778887777777654433221 2233 3333
Q ss_pred hhCCChhhHHHHHHHHhhc-CCCCCcc---hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcC
Q 035828 150 LHNNYPEKCLLYFREMGWS-GEQADNV---SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCG 225 (781)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 225 (781)
+..|+.+-+. .+.+. |..++.. -...+. ..+..++......+.+.+.+.|..++.......+.+...++.|
T Consensus 156 ~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 156 AEKGHVEVLK----ILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 4455554333 33333 4444322 122222 2233444444455666666666544311111223344444556
Q ss_pred ChhHHHHHhc
Q 035828 226 DIEAAERAFW 235 (781)
Q Consensus 226 ~~~~a~~~~~ 235 (781)
+.+-+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6665555554
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.01 E-value=6.1 Score=32.37 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHHHhCCCh------hHHHHHHhhc--CCCCCHh----HHHHHHH---HhcccCchHHHHHHHHHHHHh
Q 035828 534 NCNLCTWNCMISAFSQNKAE------VRALELFRHL--EFEPNEI----SIVSILS---ACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~--~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 598 (781)
..|..+|-..+...-+.|++ ++..+.|++. .+.|+.. .|.-|.- .+...+++++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555666666666666776 6666777766 3555421 1111100 011225566666666665543
Q ss_pred CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 035828 599 GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIR 652 (781)
Q Consensus 599 ~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 652 (781)
+-.. .. .|-.....-.+.|+...|.+++.+....+.+
T Consensus 90 hKkF-AK----------------iwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AF----------------VHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HH----------------HHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111 11 3444444455566666666666666554433
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.97 E-value=18 Score=34.21 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=78.0
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHH----HHHHHhhcCCCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLL----YFREMGWSGEQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~ 184 (781)
+.|.++..-|.+.+++++|.+++. .-...+.+.|....|-+ +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777888899999888863 22334566777766655 466677788999988888888877
Q ss_pred hccCCh-----hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 035828 185 ACLGEL-----SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFW 235 (781)
Q Consensus 185 ~~~~~~-----~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 235 (781)
...... +-......+-.+.|.....++.....+-..|.+.|++.+|+.-|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 664322 223344445545544333446777888888888888888877554
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.50 E-value=13 Score=37.70 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHHc-CC--CCC--cc
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNS--GIRPTK---SSVISLLSACSHSGLVDEGLQYYNNMLEEY-DV--RPE--TE 692 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~p~--~~ 692 (781)
...|...+...|++.+|.+++..+... |..+.. ..+..-++.|...+|+..|..++.++.... .. .|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888888999998888887642 322221 255556677888888888888888864321 11 222 35
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.|...+..+...++|.+|-+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6677788888888888887766554
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.30 E-value=37 Score=36.01 Aligned_cols=133 Identities=10% Similarity=-0.054 Sum_probs=61.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
..+.|+++.|...|+.|..... ......--+.+++...|+.++|..+|+.+.+ + ...|..+... +.|..-.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-----~-~~fYg~lAa~--~Lg~~~~ 365 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ-----Q-RGFYPMVAAQ--RIGEEYE 365 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----S-CSHHHHHHHH--HTTCCCC
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-----C-CChHHHHHHH--HcCCCCC
Confidence 3455777777777776654211 1222333344555666777777777766642 1 1233333211 1111000
Q ss_pred HHHHHHhCCCCCC-cc-----hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 710 AYEFIKNLPIQPK-PG-----VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 710 A~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
+......+. .. ..-.-+..+...|....|...+..+.+..+ +.-...++......|.++.++
T Consensus 366 ----~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v 433 (618)
T 1qsa_A 366 ----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSV 433 (618)
T ss_dssp ----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred ----CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHH
Confidence 000000110 00 011123345667888888777777665422 233445555555666655544
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.17 E-value=13 Score=43.28 Aligned_cols=127 Identities=8% Similarity=-0.019 Sum_probs=68.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGI 651 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 651 (781)
|..++..+.+.+.++.+.++-...++.....+... ....|..+...+...|++++|...+-.+.....
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~------------~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDL------------SIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH------------HHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh------------HHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 45566666666777777766665555332222110 011467777788888888888888877766433
Q ss_pred CCCHHHHHHHHHHhcccCcH------------HHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHH
Q 035828 652 RPTKSSVISLLSACSHSGLV------------DEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
+ ...+..|+..++..|.. ++..+++..-.+. ...++ +..|.-|-.-+...|++..|-.+
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~-~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQ-MINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHH-HHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHh-CCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 3 34555566555544433 3344444332221 10122 23344444445667777776554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.13 E-value=5.9 Score=29.64 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhccc
Q 035828 294 LREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCSQ 365 (781)
Q Consensus 294 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~ 365 (781)
.-+.++-+..+....+-|++.+..+.+++|.+.+|+..|.++|+.++. ......|.-+++.+-..+...|+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI~ 99 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 99 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCCC
Confidence 334555555566666778888888888888888888888888877655 122334666666555555555543
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.66 E-value=5.4 Score=36.52 Aligned_cols=122 Identities=15% Similarity=0.054 Sum_probs=80.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChH
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 708 (781)
.+.+.|+.++|++....-.+. -+-|...-..|+.-+|-.|++++|.+-++...+. .|+...-..+.+.+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 356789999999988887774 2446777788889999999999999999988754 77743322222222222 1
Q ss_pred HHH-HHHHhCCCCC----CcchH-HHHHHHHH--hcCCcHHHHHHHHHHhccCCCCCc
Q 035828 709 EAY-EFIKNLPIQP----KPGVW-GAMLSACS--HHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 709 ~A~-~~~~~~~~~p----~~~~~-~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
.+. ++|.- +..| .+..| ..++.+.. ..|+.++|..+-+++++.-|..+.
T Consensus 79 ~~R~~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 121 22321 1222 22223 44555544 479999999999999998877654
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.37 E-value=6.2 Score=29.54 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
+.-+..+-++.+-...+.|++....+.++||.+.+|+..|..+++.+..+ ..+...+|..+++ +-...+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH---------HHhhHH
Confidence 44556677777777789999999999999999999999999999998765 3344566777764 334455
Q ss_pred HhCC
Q 035828 715 KNLP 718 (781)
Q Consensus 715 ~~~~ 718 (781)
+++|
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5554
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.24 E-value=52 Score=36.67 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKS-SVI---SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 707 (781)
..|+.+.+..+++.+... .+.. -|. ++.-+|+-.|+.....++++.+... ...+..-...+.-++...|+.
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH
Confidence 556666666666666652 2222 222 2334566667765555566666432 112222223333344445555
Q ss_pred HHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCc-HHHHHHHHHHh
Q 035828 708 QEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDT-KMGKQVAELLF 750 (781)
Q Consensus 708 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 750 (781)
+.+.++++.+. ..|.+..-..+.-+....|+. .++...+..+.
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 54555554432 233333333333333344443 56666666664
No 254
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.19 E-value=18 Score=31.56 Aligned_cols=180 Identities=9% Similarity=-0.093 Sum_probs=104.4
Q ss_pred HHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCC
Q 035828 28 ALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIAD 107 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 107 (781)
.+++.+..+|...-...+.++.+.+.......+.+. .. .++...-...+.++...++.+ +...+..+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~-l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKA-LK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHH-Hc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCC
Confidence 344445566666666667777776664433333333 32 345556666666776666543 3333333322 466
Q ss_pred cchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhcc
Q 035828 108 SSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACL 187 (781)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 187 (781)
+.+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 6777777788888777766666666666677666666677777766644 4444444443 25666667777777777
Q ss_pred CChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcC
Q 035828 188 GELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCG 225 (781)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 225 (781)
|+.+....+.. +... .+ ..+....+.++.+.+
T Consensus 166 ~~~~~~~~L~~-~l~d---~~--~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GGERVRAAMEK-LAET---GT--GFARKVAVNYLETHK 197 (201)
T ss_dssp CSHHHHHHHHH-HHHH---CC--HHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHH-HHhC---CC--HHHHHHHHHHHHHHH
Confidence 76554444433 3333 12 556666666665543
No 255
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.64 E-value=18 Score=31.96 Aligned_cols=188 Identities=9% Similarity=-0.124 Sum_probs=118.3
Q ss_pred CCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHH
Q 035828 21 SYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSI 100 (781)
Q Consensus 21 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (781)
++.+....+.+.+..++...-...+..+.+.+.... ...+..+.. .++...-...+.++.+.++.+ +...+..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHH
Confidence 344444555555677787777778888888877544 444444443 356666677777887777543 333333333
Q ss_pred HhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHH
Q 035828 101 KAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSA 180 (781)
Q Consensus 101 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 180 (781)
-.++..+-...+.++.+.++.+....+.+.+..++...-...+.++...|+.+ +...+..+.. .++...-...
T Consensus 91 ---~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 ---KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp ---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 35677788888888888888777767777677778777777777777777654 4444545543 3566777778
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 181 VAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 181 l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
+.++...++.+... .+..+.+. ++..+....+.++.+.+.
T Consensus 164 ~~aL~~~~~~~~~~-~L~~~l~d-----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGGERVRA-AMEKLAET-----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCSHHHHH-HHHHHHHH-----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCchhHHH-HHHHHHhC-----CCHHHHHHHHHHHHhcCC
Confidence 88888888754433 34444433 225666666766666543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.22 E-value=38 Score=34.30 Aligned_cols=258 Identities=10% Similarity=0.005 Sum_probs=125.6
Q ss_pred cCCchhhHHHHHHHHhc-----CCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHh----hcc
Q 035828 51 NRCVVMGLHFFGEMVEE-----GIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMY----AKC 121 (781)
Q Consensus 51 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 121 (781)
.|++..|++-+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788888877666542 234456678888899999999988877777665442221 22223333322 222
Q ss_pred CChh--hHHHHhccCCC-CCeee---------hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCC
Q 035828 122 GDLN--SSECTFSGMHC-ADTVS---------WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGE 189 (781)
Q Consensus 122 ~~~~--~a~~~~~~~~~-~~~~~---------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 189 (781)
...+ .-..+.+.... .+-.. ...|...+...|++.+|.+++..+...-...+.....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k----------- 176 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK----------- 176 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH-----------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH-----------
Confidence 2222 22223332221 11111 2345566777788888888777765431111111000
Q ss_pred hhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--------CC--CcccHHHHHHHHHhCCChh
Q 035828 190 LSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT--------CK--DVVSWNAIIDGFALNGKFE 259 (781)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~--~~~~~~~li~~~~~~~~~~ 259 (781)
...+..-+..|...+++..|..++.++. .| -..-|...+..+...+++.
T Consensus 177 ---------------------ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 177 ---------------------IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 2233333444444444444444443331 00 0122444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHH----HHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhc--CCHHHHH
Q 035828 260 EAFDLLHEMQLMRSVEPDIATVVTLIS----LCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKS--NSLSKAE 333 (781)
Q Consensus 260 ~a~~~~~~m~~~~~~~pd~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~ 333 (781)
+|...|.+.-....+.-|...+...+. +..-.+....-..+.........-++...+..++.+|... .+++.+.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~ 315 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQ 315 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHH
Confidence 666665555432112223222222111 1111121122223333333333334667788888888764 4677777
Q ss_pred HHHHhhCC
Q 035828 334 LLFNAIAP 341 (781)
Q Consensus 334 ~~~~~~~~ 341 (781)
..|.....
T Consensus 316 ~~~~~~L~ 323 (445)
T 4b4t_P 316 KTYEPVLN 323 (445)
T ss_dssp HHTCSSTT
T ss_pred HHHHHHhc
Confidence 77765544
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.19 E-value=3.5 Score=41.14 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 693 (781)
+...++..+...|++++|+..+..+... .+-+...+..++.++.+.|+..+|++.|+...+ ++|+.|++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999988763 234777999999999999999999999988644 4688888654
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.82 E-value=7.8 Score=30.95 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc
Q 035828 650 GIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP 723 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 723 (781)
+-.|+..|--.+..++.+.. +..+++.+++++.+. .|. ...+-.|.-++.+.|++++|.+..+.+ ...|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34556655555666666654 566899999999876 463 567778899999999999999999987 778876
Q ss_pred chHHHH
Q 035828 724 GVWGAM 729 (781)
Q Consensus 724 ~~~~~l 729 (781)
.-...|
T Consensus 112 ~QA~~L 117 (134)
T 3o48_A 112 KQVGAL 117 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654444
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.81 E-value=7.1 Score=42.35 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
.-|...|+++.|+++-++.... .|+ -.+|..|+.+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456678999999999988754 777 4899999999999999999998888874
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.42 E-value=12 Score=30.33 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcch
Q 035828 652 RPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGV 725 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 725 (781)
.|+..+-..+..++.+.. +..+++.+++++.+. .|. ......|.-++.+.|+|++|.+..+.+ ...|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 566666666666776655 566899999999876 553 467778889999999999999999887 67787654
Q ss_pred HHHH
Q 035828 726 WGAM 729 (781)
Q Consensus 726 ~~~l 729 (781)
...|
T Consensus 113 A~~L 116 (144)
T 1y8m_A 113 VGAL 116 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.73 E-value=11 Score=30.00 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhccc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCSQ 365 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~ 365 (781)
+..+-++.+....+-|++.+..+.+.+|.+.+|+..|.++|+.++. .+....|.-+++.+-..+.+.|+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~ 142 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 142 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCC
Confidence 3444455555566778888888888888888888888888877765 223334666666555555555543
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.61 E-value=2.2 Score=39.08 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhc
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG----VWGAMLSACSHH 736 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~ 736 (781)
....+.|++++|++.++.-++. .|. ...-..|++.||-.|+|++|.+-++-. ...|+.. .|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH---
Confidence 3567889999999999988866 665 577788999999999999999888766 4556543 344444432
Q ss_pred CCcHHHHHHHHHHhcc-----CCCCCchHHH-HHH--HHHhcCChhhHHhhc
Q 035828 737 GDTKMGKQVAELLFKL-----EPENVGYYIS-LSN--MYVALGRWKDAVEIG 780 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~-----~p~~~~~~~~-l~~--~~~~~g~~~~A~~l~ 780 (781)
..=++.+.- .+..+..+.. |.. .....|+.++|.++.
T Consensus 79 -------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr 123 (273)
T 1zbp_A 79 -------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 123 (273)
T ss_dssp -------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 222222221 1334444443 333 344568888887653
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.46 E-value=5.7 Score=29.49 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=57.1
Q ss_pred CcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHh
Q 035828 87 NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMG 166 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 166 (781)
...++|..+-+.+...+. ...+--..+..+...|++++|..+.+...-||...|-+|-.+ +.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777766553 222222334456789999999999999999999999887664 6777777777777777
Q ss_pred hcC
Q 035828 167 WSG 169 (781)
Q Consensus 167 ~~g 169 (781)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 665
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.12 E-value=2.6 Score=42.07 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
....++..+...|++++|+..+..+ ...| +...+..++.++...|+..+|.+.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666677777777777666655 3344 444677777777777777777777777654
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.58 E-value=13 Score=29.60 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
+.-+..+-++.+....+.|++......+++|.+.+|+..|..+++-+..+ ..+...+|..+++ +-...+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH---------HHhhHH
Confidence 34455666667777779999999999999999999999999999998765 4444667877764 444556
Q ss_pred HhCCC
Q 035828 715 KNLPI 719 (781)
Q Consensus 715 ~~~~~ 719 (781)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66653
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.25 E-value=6 Score=29.42 Aligned_cols=79 Identities=9% Similarity=0.042 Sum_probs=56.5
Q ss_pred CcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHh
Q 035828 87 NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMG 166 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 166 (781)
...++|..+-+.+...+. ...+--..+..+...|++++|..+.+...-||...|-+|-.+ +.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777766553 222222334456788999999999999999999999887664 5677777777777777
Q ss_pred hcC
Q 035828 167 WSG 169 (781)
Q Consensus 167 ~~g 169 (781)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 267
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=77.82 E-value=51 Score=31.65 Aligned_cols=276 Identities=10% Similarity=-0.033 Sum_probs=121.7
Q ss_pred hhHHHHHhhcCCchhHHHHhhhhcCCCcch---hhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHh
Q 035828 11 TSLLTAYSNVSYFESSLALFYETCNKDVVT---WNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALT 84 (781)
Q Consensus 11 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~ 84 (781)
++.+..-++.|+++-+..+++....+|... -.+-+...++.|+.+ +.+.+.+.|..|+.. ....+..+ .
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~-~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFILA-A 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHH-H
Confidence 344555567888888888887765554332 123444455566654 444455556544322 11111111 1
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCCCC-------------CeeehHHHHHHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMHCA-------------DTVSWNTIMSGC 149 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~li~~~ 149 (781)
..+. ..........+..++... -.+-+...+..|..+-+..+++.-..+ +...++.|. ..
T Consensus 101 ~~~~----~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~-~A 175 (337)
T 4g8k_A 101 IAGS----VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM-DA 175 (337)
T ss_dssp HHTC----HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH-HH
T ss_pred hccc----chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH-HH
Confidence 1111 222233333333332211 112334445566666666665532211 111123333 33
Q ss_pred hhCCChhhHHHHHHHHhhcCCCCCcc---hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 150 LHNNYPEKCLLYFREMGWSGEQADNV---SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
+..|+.+-+..++++ .|..++.. -...+..++. .+.......+.+.+++.|..++.......+.+...+..|.
T Consensus 176 ~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 176 AEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 455665544433332 35444332 1112222221 1222223344555566665543211122234455667788
Q ss_pred hhHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHH
Q 035828 227 IEAAERAFWGMT----CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHG 302 (781)
Q Consensus 227 ~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 302 (781)
.+.+..+++.-. .+|..-++.|..+ ++.|+.+ +.+.+.+.| ..+|..+ .+...++.|+. ++.+
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~G-Ad~n~~~---~L~~A~~~~~~----~iv~ 318 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRG-ASTDCGD---LVMTARRNYDH----SLVK 318 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTS-CSSTTCC---HHHHHHHTTCH----HHHH
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCC-CCCCCCC---HHHHHHHcCCH----HHHH
Confidence 777777765422 2233334444433 4455543 333344555 6666544 23333344443 3455
Q ss_pred HHHHhcCCCCh
Q 035828 303 YAIRRLLGYDL 313 (781)
Q Consensus 303 ~~~~~~~~~~~ 313 (781)
.+++.|-.||.
T Consensus 319 ~Ll~~GA~~d~ 329 (337)
T 4g8k_A 319 VLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTCCC--
T ss_pred HHHHCcCCCCC
Confidence 55666665553
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.73 E-value=19 Score=26.76 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035828 191 SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL 270 (781)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (781)
++|..+-+++...+. . ..+--.-+..+.+.|++++|..+.+.+.-||...|-+|-. .+.|--+++..-+.++..
T Consensus 23 qEA~tIAdwL~~~~~--~--E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--D--EAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCc--H--HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 445555555544442 1 3333344455678999999999999999999999987765 478888888888878877
Q ss_pred cCCCCCCHHHHHH
Q 035828 271 MRSVEPDIATVVT 283 (781)
Q Consensus 271 ~~~~~pd~~t~~~ 283 (781)
+| .|....|..
T Consensus 97 sg--~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS--DPALADFAA 107 (115)
T ss_dssp CS--SHHHHHHHH
T ss_pred CC--CHHHHHHHH
Confidence 65 555555543
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=77.26 E-value=18 Score=32.70 Aligned_cols=85 Identities=8% Similarity=-0.034 Sum_probs=37.7
Q ss_pred HHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhh
Q 035828 45 ITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYA 119 (781)
Q Consensus 45 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 119 (781)
+...++.|+.+.+..+++.+.+.|..++.. -.+. +...+..|+. ++++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 344455566665555555555554433321 1122 2222333332 34445555554443321 123344444
Q ss_pred ccCChhhHHHHhccC
Q 035828 120 KCGDLNSSECTFSGM 134 (781)
Q Consensus 120 ~~~~~~~a~~~~~~~ 134 (781)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 556665555555443
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.94 E-value=21 Score=26.67 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035828 191 SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL 270 (781)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (781)
++|..+-+++...+. . ..+--.-+..+.+.|++++|..+.+.+.-||...|-+|-.. +.|--+++..-+.++..
T Consensus 24 qEA~tIAdwL~~~~~--~--E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--E--EAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCc--H--HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 445555555444432 1 33333344556788999999999999999999988877654 66777777777777776
Q ss_pred cCCCCCCHHHHH
Q 035828 271 MRSVEPDIATVV 282 (781)
Q Consensus 271 ~~~~~pd~~t~~ 282 (781)
+| .|....|.
T Consensus 98 sg--~p~~q~Fa 107 (116)
T 2p58_C 98 SQ--DPRIQTFV 107 (116)
T ss_dssp CC--CHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 65 55555554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.77 E-value=19 Score=33.49 Aligned_cols=48 Identities=6% Similarity=-0.075 Sum_probs=23.5
Q ss_pred cccchhhhhhHHHHHHHhcCCCChHH--HHHHHHHHHhcCCHHHHHHHHH
Q 035828 290 DSLLLREGRSVHGYAIRRLLGYDLLM--MNSLMDFYSKSNSLSKAELLFN 337 (781)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 337 (781)
..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444556666666665544321 1122333445566666655555
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.98 E-value=28 Score=40.58 Aligned_cols=126 Identities=7% Similarity=-0.040 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----------------
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEP---------------- 276 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p---------------- 276 (781)
....++..+.+.+..+.+.++..-.+. +...--.+..++...|++++|.+.|.+.... +..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~--~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV--LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS--CTTCCCSCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hcccchhhhhhcccccccc
Confidence 344566667777888888776655543 3333345567788999999999999765321 111
Q ss_pred -------CHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 277 -------DIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDL----LMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 277 -------d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
-..-|..++..+.+.+..+.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 1234677788888888888888887777665432222 2678888999999999999888876643
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.02 E-value=48 Score=29.05 Aligned_cols=172 Identities=9% Similarity=-0.096 Sum_probs=101.2
Q ss_pred CChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHh
Q 035828 71 FDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCL 150 (781)
Q Consensus 71 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 150 (781)
++...-...+..+.+.+.. .+...+..+.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566666666666666653 23333333332 4566677777778888777666666666677777777677777777
Q ss_pred hCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHH
Q 035828 151 HNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAA 230 (781)
Q Consensus 151 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 230 (781)
+.++.+.. ..+..+.. .++...-...+.++...++.+....+...+ . +|+..+....+.++.+.+..+..
T Consensus 107 ~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~-----d~~~~vr~~a~~aL~~~~~~~~~ 176 (211)
T 3ltm_A 107 QIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKAL-K-----DEDGWVRQSAADALGEIGGERVR 176 (211)
T ss_dssp HHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T-----CSSHHHHHHHHHHHHHHCSHHHH
T ss_pred HhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-c-----CCCHHHHHHHHHHHHHhCchhHH
Confidence 77775444 44444443 366667777777887777765444443322 1 24467777778888887774433
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCC
Q 035828 231 ERAFWGMTCKDVVSWNAIIDGFALNG 256 (781)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~~~~~~ 256 (781)
..+...+..++...-...+.++.+.+
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33333333455555555555554443
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.41 E-value=42 Score=29.95 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=58.1
Q ss_pred chhHHHHHhhcCCchhHHHHhhhhcCCCcc--hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhh---HHHHHHHHh
Q 035828 10 STSLLTAYSNVSYFESSLALFYETCNKDVV--TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTT---LLIIVSALT 84 (781)
Q Consensus 10 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~ 84 (781)
.+.|.. ..+.|+++....+++....++.. .-.+.+...++.|+.+ +++.+.+.|..++... -...+...+
T Consensus 10 ~~~l~~-A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 10 TWDIVK-ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp GCCHHH-HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred chHHHH-HHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence 334443 45678888888887764433322 1234555666666654 3444445554333211 112233333
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhcc
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSG 133 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 133 (781)
..|+ .++++.+.+.|..++... -.+.+...++.|+.+-+..+++.
T Consensus 85 ~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 85 RQGH----LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCC----HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 4444 345556666665554321 22344555566776666666654
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.92 E-value=61 Score=31.41 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHcC
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKDV---VSWNAIIDGFALNGK--FEEAFDLLHEMQLMR 272 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 272 (781)
..+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+.+++..+...+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 456778888888999999999999887632 223344444444333 355777888887766
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.96 E-value=1e+02 Score=32.85 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.3
Q ss_pred hhcCChHHHHHHHHhCCCCCCc
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKP 723 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~ 723 (781)
.+.|+|++|++.++++++-|..
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 7889999999999988766643
No 277
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=69.69 E-value=71 Score=29.58 Aligned_cols=240 Identities=8% Similarity=-0.121 Sum_probs=0.0
Q ss_pred CCCCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHH--hcCCCCChhhHHHHHH
Q 035828 4 LAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMV--EEGIRFDSTTLLIIVS 81 (781)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~~ll~ 81 (781)
.||...-..-+.++.+.|..+....+..-+..++...-...+.++.+.|....+..-+-.+. ..--.++..+-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Q ss_pred HHhccC--cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCC--Chhh
Q 035828 82 ALTQMN--CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNN--YPEK 157 (781)
Q Consensus 82 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~ 157 (781)
++...+ +......+...+.+.--.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++...| ....
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 193 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccC
Q 035828 158 CLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGM 237 (781)
Q Consensus 158 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 237 (781)
...+.+.+.. ++..+....+.++.+.|+.+....+...+
T Consensus 194 ~~~L~~~l~d-----------------------------------------~~~~vR~~A~~aL~~~~~~~~~~~L~~~l 232 (280)
T 1oyz_A 194 RDCFVEMLQD-----------------------------------------KNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232 (280)
T ss_dssp HHHHHHHTTC-----------------------------------------SCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhcC-----------------------------------------CCHHHHHHHHHHHHHhCCHhhHHHHHHHh
Q ss_pred CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 238 TCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 238 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
..++ .-...+.++.+.|. ..++..+..+.. -.+|.......+..+.+
T Consensus 233 ~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~---~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 233 KKNT--VYDDIIEAAGELGD-KTLLPVLDTMLY---KFDDNEIITSAIDKLKR 279 (280)
T ss_dssp TSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHT---TSSCCHHHHHHHHHHTC
T ss_pred cCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHh---cCCCcHHHHHHHHHhhc
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.08 E-value=53 Score=28.54 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=47.6
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
.++...+..+|..|...|+-..... .|......+...|++.+|.++|+.-.+.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Al---------------fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSL---------------FYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446688899999988888766543 588888888999999999999999999888884
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.43 E-value=1e+02 Score=30.45 Aligned_cols=93 Identities=6% Similarity=-0.033 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--H---HHHHHHHHHhcccCcHHHHHHHHHHhHHHcC-CCCCcc----hH
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPT--K---SSVISLLSACSHSGLVDEGLQYYNNMLEEYD-VRPETE----HH 694 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~----~~ 694 (781)
.++..|...|++.+|.+++.++.+.=-..| . ..+..-+..|...+++.++...+........ +.|++. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467888999999999999999876311112 1 2455556778888999999999988755421 223322 22
Q ss_pred HHHHHHhh-hcCChHHHHHHHHhC
Q 035828 695 VCIVDMLG-RSGKLQEAYEFIKNL 717 (781)
Q Consensus 695 ~~l~~~~~-~~g~~~~A~~~~~~~ 717 (781)
..-+..+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 23334456 789999998776544
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.64 E-value=31 Score=31.58 Aligned_cols=90 Identities=8% Similarity=-0.094 Sum_probs=43.4
Q ss_pred HHHHHhcCCchhhHHHHHHHHhcCCCCChhh-------HHHHHHHHh--ccCcccchhHHHHHHHHhc---------CCC
Q 035828 45 ITACVENRCVVMGLHFFGEMVEEGIRFDSTT-------LLIIVSALT--QMNCLKQGRVVHCLSIKAG---------MIA 106 (781)
Q Consensus 45 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 106 (781)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.....+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3444566777777777776666665554322 233333332 4555555555554432211 011
Q ss_pred CcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 107 DSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
....-.+.+...+..|+.+-+..+++.-
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 0012223444455566766666666543
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=66.07 E-value=38 Score=31.92 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHhCCCCCCc--chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 714 IKNLPIQPKP--GVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 714 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
|...+++|.. .+++.-+....|.+++..|..+.++++++.|..
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 4455667743 356777888899999999999999999999863
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.30 E-value=1.1e+02 Score=30.72 Aligned_cols=208 Identities=6% Similarity=-0.009 Sum_probs=107.7
Q ss_pred hhHHHHHhhcCCchhHHHHhhhhcCCCcc--hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCCh---hhHHHHHHHHhc
Q 035828 11 TSLLTAYSNVSYFESSLALFYETCNKDVV--TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDS---TTLLIIVSALTQ 85 (781)
Q Consensus 11 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 85 (781)
.+.+..-+..|+++-+..+++....++.. ...+.+...++.|+.+-+..++ +.|..++. .-.+ .+...+.
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~ 89 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQT-PLHCAAR 89 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCC-HHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCC-HHHHHHH
Confidence 34556667789999888888875555433 2344566666777765544444 44544432 2222 3334445
Q ss_pred cCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCChhhHHH
Q 035828 86 MNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNYPEKCLL 160 (781)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 160 (781)
.|+. ++++.+.+.|..++... -.+-+...++.|+.+-+..+++.-... +...++. +...+..|+.+
T Consensus 90 ~g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~---- 160 (437)
T 1n11_A 90 IGHT----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR---- 160 (437)
T ss_dssp HTCH----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----
T ss_pred CCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----
Confidence 5554 45666666776655322 234455566778888888887654322 2222333 33345566654
Q ss_pred HHHHHhhcCCCCCcch--HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhcc
Q 035828 161 YFREMGWSGEQADNVS--LSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 161 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 236 (781)
+++.+.+.|..|+... -...+...+..|+.+..+. +.+.|..++.........+...+..|+.+-+..+++.
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL----LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH----HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3444445555554321 1123334445566544433 3344433321111112334455667777777666654
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.23 E-value=19 Score=36.40 Aligned_cols=97 Identities=9% Similarity=-0.072 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhCC----CCCCcchHHHH-
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNLP----IQPKPGVWGAM- 729 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l- 729 (781)
+...+..-+.+.|+.++|.+.+.++.+. ...+. ...+..+++.+...++|..|...++++. ..++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 6777888888889999999999988765 34444 4677788888888899998888877761 22222222111
Q ss_pred ---HHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 730 ---LSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 730 ---~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
+..+...+++..|-..|-+++.-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1123457888888888888765543
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.45 E-value=48 Score=32.12 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc--chHHHHHHHHHHHHhcCCCChHH
Q 035828 439 NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE--LAFEGKSLHGLALKSLMGLDTRV 508 (781)
Q Consensus 439 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 508 (781)
+.++.-|...++.++|.+.++++..-. ..+ ......+..++-+.+ ..+....++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPH-FHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTT-CHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCc-chH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 455666666677777777766663211 111 122233333343322 23445555555555554444333
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.28 E-value=19 Score=36.31 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcch----HH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEH----HV 695 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~ 695 (781)
++..+...|.+.|+++.|.+.+.++...-..+. ...+...++.+...+|+..+...++++.....-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677888999999999999999987433332 346777888899999999999999998655333344221 22
Q ss_pred HHHHHhhhcCChHHHHHHHHhC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.-+..+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2334456788999998776554
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=62.25 E-value=68 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=9.3
Q ss_pred HHHhhccCChhhHHHHhcc
Q 035828 115 VNMYAKCGDLNSSECTFSG 133 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~ 133 (781)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555555555543
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.00 E-value=57 Score=28.14 Aligned_cols=151 Identities=8% Similarity=0.002 Sum_probs=70.1
Q ss_pred HHHHhhcCCchhHHHHhhhhc-CCC---cchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhcc
Q 035828 14 LTAYSNVSYFESSLALFYETC-NKD---VVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQM 86 (781)
Q Consensus 14 ~~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~ 86 (781)
+......|+.+....++.... .++ ..-++ .+...++.|+.+ +.+.+.+.|..++.. -.+.+. ..+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYL-YAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHc
Confidence 334456788888888887643 332 22233 444455566643 445555566555432 223333 33334
Q ss_pred CcccchhHHHHHHHH-hcCCCCcch--hhhHHHHhhccCChhhHHHHhccC-C---CCCeeehHHHHHHHhhCCChhhHH
Q 035828 87 NCLKQGRVVHCLSIK-AGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGM-H---CADTVSWNTIMSGCLHNNYPEKCL 159 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~-~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~a~ 159 (781)
|+. ++++.+.+ .+..++... -.+.+...++.|+.+-+..+++.- . .+|..-++.|..+.........-.
T Consensus 83 ~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 83 GRT----EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp TCH----HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred CCH----HHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 443 33444442 222222211 122344445566666666666543 1 223333444444332222233335
Q ss_pred HHHHHHhhcCCCCCc
Q 035828 160 LYFREMGWSGEQADN 174 (781)
Q Consensus 160 ~~~~~m~~~g~~p~~ 174 (781)
++.+.+.+.|..|+.
T Consensus 159 ~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 159 DIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHTTCCTTC
T ss_pred HHHHHHHHCCCCCCc
Confidence 555666666655543
No 288
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=59.81 E-value=67 Score=30.30 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHhCCCCCCcc--hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 714 IKNLPIQPKPG--VWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 714 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
|...+++|... +++.-+....+.+++..|..+.++++++.|+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44456677533 5677778888999999999999999999875
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.36 E-value=1.3e+02 Score=28.84 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCChhhHHHHHH
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTF----KSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~~p~~~~~~~ll~ 479 (781)
.+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++- +-..+.+ +++|..+...++.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 45667777788888999888887654 44566677765554443 4444555 8888877777777
Q ss_pred HhcCcc
Q 035828 480 ACGNLE 485 (781)
Q Consensus 480 ~~~~~~ 485 (781)
.+....
T Consensus 103 L~~~~~ 108 (336)
T 3lpz_A 103 CLRLFQ 108 (336)
T ss_dssp HHTTSC
T ss_pred HHHhCC
Confidence 765544
No 290
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=57.10 E-value=77 Score=28.05 Aligned_cols=22 Identities=0% Similarity=0.003 Sum_probs=13.9
Q ss_pred hhHHHHHhhcCCchhHHHHhhh
Q 035828 11 TSLLTAYSNVSYFESSLALFYE 32 (781)
Q Consensus 11 ~~l~~~~~~~~~~~~a~~~~~~ 32 (781)
+..+....+.|+++....+++.
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILA 28 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHh
Confidence 3445556667777777776655
No 291
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=56.23 E-value=2.5e+02 Score=31.39 Aligned_cols=168 Identities=11% Similarity=-0.001 Sum_probs=78.9
Q ss_pred HHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHH
Q 035828 547 FSQNKAEVRALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWS 624 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 624 (781)
++-.|+.+....++..+ +-..+. .-...+--++...|+.+.+..+.+.+... ..|... |. .-.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vR-yg-------------aa~ 564 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLR-YG-------------GAF 564 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHH-HH-------------HHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHH-HH-------------HHH
Confidence 34556655555555554 222222 22222223344667777777776666542 122111 11 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
++.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+..+++.+.+. ..|....-..+.-+....
T Consensus 565 alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 565 TIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhcc
Confidence 2233455667766555677777753 1122222222222333455555566666555432 244443333444444444
Q ss_pred CCh-HHHHHHHHhCCCCCCcchHHHHHHH
Q 035828 705 GKL-QEAYEFIKNLPIQPKPGVWGAMLSA 732 (781)
Q Consensus 705 g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 732 (781)
|+. .+|++++..+...++..+-..-+-+
T Consensus 642 Gn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 443 5677787777555554444333333
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.64 E-value=1e+02 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCC-CcccHHHHHHHHHhCCChhHHHHHHHH
Q 035828 216 SLISMYSQCGDIEAAERAFWGMTCK-DVVSWNAIIDGFALNGKFEEAFDLLHE 267 (781)
Q Consensus 216 ~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (781)
+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 3444445566666555555543322 221223333444556665555444443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.13 E-value=31 Score=27.55 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=45.5
Q ss_pred chhHHHHHhhcCCchhHHHHhhhhcCCCc---chhhHHHHHHHhcCC--chhhHHHHHHHHhcCCCCChh
Q 035828 10 STSLLTAYSNVSYFESSLALFYETCNKDV---VTWNAMITACVENRC--VVMGLHFFGEMVEEGIRFDST 74 (781)
Q Consensus 10 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 74 (781)
.+.++.-|...|+.++|.+.++++..|.- .++..+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 46788999999999999999999877622 334555555555432 356778888888777544433
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.68 E-value=1.2e+02 Score=30.34 Aligned_cols=267 Identities=8% Similarity=0.039 Sum_probs=134.4
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHhcCCCCChhh--HHHHHHHHhccCcccchhHHHHHHHHhcCCCCcc--hhhhHHHHh
Q 035828 43 AMITACVENRCVVMGLHFFGEMVEEGIRFDSTT--LLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSS--LCNVFVNMY 118 (781)
Q Consensus 43 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~ 118 (781)
+.+...+..|+.+-+.. +.+.|..|+... ....+...+..|+. ++++.+.+.|..++.. .-.+.+...
T Consensus 16 t~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHT----EVAKYLLQNKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCH----HHHHHHHHHTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 34555667777654444 445566555321 22334444556664 4555666667655432 233556666
Q ss_pred hccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch--HHHHHHHhhccCChhHH
Q 035828 119 AKCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS--LSSAVAASACLGELSYG 193 (781)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 193 (781)
++.|..+-+.-+++.-..+ +...++.| ...+..|+.+-+..+++ .|..++... -...+...+..|+.+.+
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 7888888888887754433 22233333 34456677665555554 343332211 11234445566776655
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035828 194 KVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCK---DVVSWNAIIDGFALNGKFEEAFDLLHEMQL 270 (781)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (781)
+.+ .+.|..++.......+.+...+..|+.+-+..+++.-..+ +...++.+ ...+..|+.+-+..+++
T Consensus 163 ~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~---- 233 (437)
T 1n11_A 163 ELL----LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQ---- 233 (437)
T ss_dssp HHH----HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHHH----
T ss_pred HHH----HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHH----
Confidence 544 4455443311112223455566788888777777654433 22233333 34456777655444443
Q ss_pred cCCCCCCH---HHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHh
Q 035828 271 MRSVEPDI---ATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDL---LMMNSLMDFYSKSNSLSKAELLFNA 338 (781)
Q Consensus 271 ~~~~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 338 (781)
.| ..++. ...+ .+...+..|+.+ +++.+.+.|..++. .-.+. +...+..|+.+-+..+++.
T Consensus 234 ~g-~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 234 YG-GSANAESVQGVT-PLHLAAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp TT-CCTTCCCTTCCC-HHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHH
T ss_pred cC-CCCCCCCCCCCC-HHHHHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC
Confidence 33 22221 1122 233344555554 44444555544432 11222 3334566777776666654
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.66 E-value=2.2e+02 Score=30.31 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCC--cccHHHHHHHHHhC
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHNSD--TSCWNIVIVACTQN 448 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~ 448 (781)
.-.+|-.+.++|.+++|.++.++...... ...+...+..|+..
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 44677788999999999999988754332 24777888888754
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.37 E-value=1.4e+02 Score=27.73 Aligned_cols=204 Identities=8% Similarity=-0.074 Sum_probs=107.8
Q ss_pred hHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhccCc
Q 035828 12 SLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQMNC 88 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~ 88 (781)
+.+...+..|+.+-+..+++....++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+.|. ..+..|+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~ 107 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDSGN 107 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHcCC
Confidence 3445556678988888888775544444334566666677776544 4444556655432 233333 3345555
Q ss_pred ccchhHHHHHHHHhcCCCCcch---hhhHHHHhhccCChhhHHHHhccCCCC-CeeehHHHHHHHhhCCChhhHHHHHHH
Q 035828 89 LKQGRVVHCLSIKAGMIADSSL---CNVFVNMYAKCGDLNSSECTFSGMHCA-DTVSWNTIMSGCLHNNYPEKCLLYFRE 164 (781)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 164 (781)
. ++++.+.+.|..++... +.+.+...+..|..+-+..+++.-..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 108 ~----~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 M----QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp H----HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H----HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 4 45556666666555432 246677777888888888888765433 221334455555677777665555554
Q ss_pred HhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhcc
Q 035828 165 MGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 165 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 236 (781)
-..-... +..-....+...+..|+.+ +.+.+++.|..++ .... .-+..|+.+-+.-+++.
T Consensus 184 gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~--~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 184 MTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIY--SANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCST--TTTG-----GGGTTTCHHHHHHHHHH
T ss_pred CCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCC--CCCh-----hhhhcCCHHHHHHHHHc
Confidence 2221111 1111111233333445543 4444455565544 3221 11345666655555543
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=54.29 E-value=1.1e+02 Score=29.63 Aligned_cols=217 Identities=8% Similarity=-0.043 Sum_probs=110.4
Q ss_pred hHHHHHhhcCCchhHHHHhhhhcCCCcch--hhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcc
Q 035828 12 SLLTAYSNVSYFESSLALFYETCNKDVVT--WNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL 89 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 89 (781)
+.+...+..|+.+.+..+++....++... -.+.+...+..|+.+-+ +.+.+.|..++...-...+...+..|+.
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 44555567789888888887754443322 23345555666765444 4444455544442222344445566777
Q ss_pred cchhHHHHHHHHhcCCCCc-------------------chhhhHHHHhhccC--ChhhHHHHhccCCCC---CeeehHHH
Q 035828 90 KQGRVVHCLSIKAGMIADS-------------------SLCNVFVNMYAKCG--DLNSSECTFSGMHCA---DTVSWNTI 145 (781)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~-------------------~~~~~li~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l 145 (781)
+-+..+++.....|..++. ..-.+.+...+..| ..+-+..+++.-..+ |...++.|
T Consensus 98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L 177 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177 (364)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 7666666665554544432 01234455556667 677777777653322 33334444
Q ss_pred HHHHhhCCChhhHHHHHHHHhh-cCCCCCcc--hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 035828 146 MSGCLHNNYPEKCLLYFREMGW-SGEQADNV--SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYS 222 (781)
Q Consensus 146 i~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 222 (781)
.. .+..|+.+-+..+++.-.. .++.++.. .-.+.+...+..|+.+.++.+ ++.|..++.......+-+...+
T Consensus 178 ~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 178 MR-AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF----VEMGIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp HH-HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHH----HTTTCCTTCCCTTSCCHHHHHH
T ss_pred HH-HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHH
Confidence 43 4566766555555543221 11112211 111223344466776554444 4455444311112223344556
Q ss_pred hcCChhHHHHHhccC
Q 035828 223 QCGDIEAAERAFWGM 237 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~ 237 (781)
..|+.+-+.-+++.-
T Consensus 253 ~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 253 RAAMVLLTKELLQKT 267 (364)
T ss_dssp HTCCHHHHHHHHHHS
T ss_pred HhChHHHHHHHHHcC
Confidence 678888877777653
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.81 E-value=92 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK 655 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 655 (781)
.+..+|..|...|+-..... .|......+...|++.+|.++|+.-.+.+-+|-.
T Consensus 83 dp~~if~~L~~~~IG~~~Al---------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSP---------------LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37888888888887665443 5888888889999999999999999988888843
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.58 E-value=83 Score=28.57 Aligned_cols=115 Identities=8% Similarity=-0.061 Sum_probs=62.5
Q ss_pred HHHHHhhcCCchhHHHHhhh----hcCCCc-------chhhHHHHHHH--hcCCchhhHHHHHHHHhcC---------CC
Q 035828 13 LLTAYSNVSYFESSLALFYE----TCNKDV-------VTWNAMITACV--ENRCVVMGLHFFGEMVEEG---------IR 70 (781)
Q Consensus 13 l~~~~~~~~~~~~a~~~~~~----~~~~~~-------~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~---------~~ 70 (781)
.+...++.|+.+....+++. ....+. .-++.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34555677888887777762 222222 23344443332 5677777777766543211 11
Q ss_pred -CChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcch----------------hhhHHHHhhccCChhhHHHHhc
Q 035828 71 -FDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSL----------------CNVFVNMYAKCGDLNSSECTFS 132 (781)
Q Consensus 71 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~a~~~~~ 132 (781)
.+..-.+.|. ..+..|+ .++.+.+.+.|..++... -.+-+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t~L~-~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTALH-IAIERRC----KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCHHH-HHHHTTC----HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCHHH-HHHHcCC----HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1112223333 3344555 346666777787766543 3355555666777777777776
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.42 E-value=35 Score=34.86 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-------cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-------TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..++.+++.|...+.++.|..+..+.. .+.+ ...+..+++.+.-.++|.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 466777777777777777777777652 1111 122234556666677777777666554
No 301
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=48.69 E-value=1.3e+02 Score=27.14 Aligned_cols=89 Identities=6% Similarity=-0.122 Sum_probs=42.0
Q ss_pred HHHHHHhcCCchhhHHHHHHHHhcCCCCCh-------hhHHHHHHHHhcc---CcccchhHHHHHHHHhcCCC-------
Q 035828 44 MITACVENRCVVMGLHFFGEMVEEGIRFDS-------TTLLIIVSALTQM---NCLKQGRVVHCLSIKAGMIA------- 106 (781)
Q Consensus 44 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 106 (781)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++ .. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344455666666666666666666654432 2223333333 33 55554444444433322100
Q ss_pred ---CcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 107 ---DSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 107 ---~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
+.. -.+-+...+..|+.+-+..+++.-
T Consensus 84 ~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 84 TDEFYQ-GHSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp CSTTTT-TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccccc-CCCHHHHHHHcCCHHHHHHHHHcC
Confidence 111 223344445566666666666543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.59 E-value=28 Score=28.76 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=44.7
Q ss_pred chhHHHHHhhcCCchhHHHHhhhhcCCC---cchhhHHHHHHHhcCC--chhhHHHHHHHHhcCCCCCh
Q 035828 10 STSLLTAYSNVSYFESSLALFYETCNKD---VVTWNAMITACVENRC--VVMGLHFFGEMVEEGIRFDS 73 (781)
Q Consensus 10 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~ 73 (781)
.+.++.-|...|+.++|.+.++++..|. ..++..+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4678899999999999999999987762 2334555555555322 34577888888877754443
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.14 E-value=88 Score=27.72 Aligned_cols=42 Identities=10% Similarity=-0.080 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCCcc--hhhhHHHHhhccCChhhHHHHhccCC
Q 035828 94 VVHCLSIKAGMIADSS--LCNVFVNMYAKCGDLNSSECTFSGMH 135 (781)
Q Consensus 94 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~ 135 (781)
++++.+.+.|..++.. .-.+.+...++.|+.+-+..+++.-.
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 4444555555444332 22244555566666666666665443
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.30 E-value=1.4e+02 Score=25.39 Aligned_cols=83 Identities=8% Similarity=-0.100 Sum_probs=43.1
Q ss_pred HHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCC
Q 035828 46 TACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGD 123 (781)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~ 123 (781)
...+..|+.+.+..++..-...--..+..-.+.|..+ ++.|+ .++++.+.+.|..++... -.+-+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3445567766666655432100001222223333333 34454 456666777776665432 2344555567788
Q ss_pred hhhHHHHhcc
Q 035828 124 LNSSECTFSG 133 (781)
Q Consensus 124 ~~~a~~~~~~ 133 (781)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8887777744
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.19 E-value=1.3e+02 Score=25.03 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+....+|..|...|+-..... .|......+...|++.+|.++|..-.+.+-+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al---------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ---------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346778888888887665543 57788888889999999999999999988888543
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.41 E-value=61 Score=23.08 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhccC-cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh
Q 035828 62 GEMVEEGIRFDSTTLLIIVSALTQMN-CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL 124 (781)
Q Consensus 62 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (781)
+.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556666665544 34555555554 5666777777777666555666666666666665544
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.38 E-value=1.1e+02 Score=24.37 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHcC
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKDV---VSWNAIIDGFALNGK--FEEAFDLLHEMQLMR 272 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 272 (781)
..+.++.-|...|+.++|.+.++++..|.. .....+..++=+.++ .+.+..++..+...+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 456678888888999999999988876622 223334444444432 356777888887766
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.30 E-value=1.8e+02 Score=32.99 Aligned_cols=47 Identities=6% Similarity=-0.108 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccC-CCCCc----hHHHHHHHHHhcC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLE-PENVG----YYISLSNMYVALG 771 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~g 771 (781)
.|.+++..+.+.+-++-+.+..+.+++.- ++++. .+..+-.+.++.|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57788888888999999999999999654 55554 3444444554443
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.16 E-value=2.2e+02 Score=26.85 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCC---cccHHHHHHHHHhCCC--hHHHHHHHHHHHHcC
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHNSD---TSCWNIVIVACTQNGH--FQEAIKTFKSMTQQQ 465 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~ 465 (781)
.+.++.-|...|+.++|...++++. .|. .....++..++-+.++ .+....++..+.+.|
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 3456677777788888888888873 231 1223333444444322 345667777776665
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.65 E-value=64 Score=26.98 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=13.1
Q ss_pred HhcccCcHHHHHHHHHHhHHH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~ 684 (781)
++-+.+++..|...++.+++.
T Consensus 71 Cy~klKdYkkA~~~le~il~~ 91 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEG 91 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777766643
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.96 E-value=1.7e+02 Score=25.13 Aligned_cols=16 Identities=6% Similarity=-0.259 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHhccc
Q 035828 277 DIATVVTLISLCADSL 292 (781)
Q Consensus 277 d~~t~~~ll~~~~~~~ 292 (781)
+...-...+.++.+.+
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333334444444433
No 312
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.86 E-value=1.2e+02 Score=26.38 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=47.6
Q ss_pred CCCCHH---HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 651 IRPTKS---SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 651 ~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.+-|.. .|-..+..| ..++..++.++|.-|... ++--. ...|...+..+...|++.+|.++++..
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455554 344344433 234467889999999877 77776 478889999999999999999998865
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.71 E-value=1.2e+02 Score=27.32 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc--CCCCC----CHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHH
Q 035828 249 IDGFALNGKFEEAFDLLHEMQLM--RSVEP----DIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDF 322 (781)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~--~~~~p----d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 322 (781)
+..+....++++|.+++++.++. + +++ +.......+..-........+..+.+++. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~-~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLED-LSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh-CcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 45566677777777776655431 1 221 12233333444444444445555555552 2 4566667777889
Q ss_pred HHhcCCHHHHHHHHHhhC
Q 035828 323 YSKSNSLSKAELLFNAIA 340 (781)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~ 340 (781)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999986653
No 314
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.53 E-value=1.1e+02 Score=25.66 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=47.8
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----------------CCCCCc-hHH
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL-----------------EPENVG-YYI 761 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------~p~~~~-~~~ 761 (781)
.+.-.|.+.+++-++.... ...+.-|..+ .+.+.+|+.+|..-++.+++- +|.|-+ .+.
T Consensus 42 ~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 3445677777777666552 1122233333 234567777777777777732 233333 366
Q ss_pred HHHHHHHhcCChhhHHhhc
Q 035828 762 SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l~ 780 (781)
.++.++.+.|+.+||+.-+
T Consensus 119 l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHh
Confidence 7888999999999998643
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.51 E-value=98 Score=30.00 Aligned_cols=206 Identities=8% Similarity=-0.051 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhh
Q 035828 43 AMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYA 119 (781)
Q Consensus 43 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 119 (781)
+.+...+..|+.+.+..+ .+.|..++.. -.+.| ...+..|+. ++++.+.+.|..++...-.+-+..-+
T Consensus 22 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTAL-HLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp HHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHH-HHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHH-HHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHH
Confidence 345555666776555444 4556555432 23333 444455554 56667777777666644455666667
Q ss_pred ccCChhhHHHHhccC----CC--------------------CCeeehHHHHHHHhhCC--ChhhHHHHHHHHhhcCCCCC
Q 035828 120 KCGDLNSSECTFSGM----HC--------------------ADTVSWNTIMSGCLHNN--YPEKCLLYFREMGWSGEQAD 173 (781)
Q Consensus 120 ~~~~~~~a~~~~~~~----~~--------------------~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~ 173 (781)
..|+.+-+..+++.. .. .+...++.|.. .+..| +.+ +++.+.+.|..++
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~----~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLE----MIKILVQLGASPT 167 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHH----HHHHHHHHTCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHH----HHHHHHHcCCCCc
Confidence 788888888777651 11 12223444444 44555 443 4444444566655
Q ss_pred cch--HHHHHHHhhccCChhHHHHHHHHHHHhcCC-----CCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcc
Q 035828 174 NVS--LSSAVAASACLGELSYGKVIHALGIKLGYE-----DSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC---KDVV 243 (781)
Q Consensus 174 ~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~ 243 (781)
... -...+...+..|+.+.++.+++ .|.. .+.......+.+...+..|+.+-+.-+++.=.. +|..
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~ 243 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMD----TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNE 243 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH----HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHh----cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 432 1233444456677765555544 4433 221111122334455678888887777764322 2333
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHH
Q 035828 244 SWNAIIDGFALNGKFEEAFDLLHE 267 (781)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~ 267 (781)
-.+.|.. -++.|+.+-+.-+++.
T Consensus 244 g~tpL~~-A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYL-SVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHH-HHHTCCHHHHHHHHHH
T ss_pred CCCHHHH-HHHhChHHHHHHHHHc
Confidence 3444443 3556776666655554
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.96 E-value=60 Score=28.27 Aligned_cols=18 Identities=6% Similarity=0.187 Sum_probs=9.9
Q ss_pred HhcccCcHHHHHHHHHHh
Q 035828 664 ACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~ 681 (781)
.|.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 455555555555555554
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.64 E-value=1.4e+02 Score=28.13 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCC--cccHHHHHHHHHhCCC--hHHHHHHHHHHH
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHNSD--TSCWNIVIVACTQNGH--FQEAIKTFKSMT 462 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~A~~~~~~m~ 462 (781)
...++.-|...|+.++|...++++ ..|. ......++..-...++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el-~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL-NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT-CCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-CCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456788888899999999999988 3332 1222333333333332 334455566664
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.57 E-value=54 Score=29.54 Aligned_cols=89 Identities=2% Similarity=-0.122 Sum_probs=40.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH 735 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 735 (781)
-+..+....++++|.+++++..+...-.++ .......+..-.....-.=+..+.+++...++.......+..+.+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~r 103 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMIK 103 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356666777777777777766443211111 111111222212211111122222333223344445555555666
Q ss_pred cCCcHHHHHHHHHH
Q 035828 736 HGDTKMGKQVAELL 749 (781)
Q Consensus 736 ~g~~~~A~~~~~~~ 749 (781)
.|+.++|.++|-+.
T Consensus 104 Lg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 104 LGLPEQALDLFLQN 117 (235)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH
Confidence 66666666665554
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.46 E-value=1.4e+02 Score=26.38 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=10.6
Q ss_pred HHHHhhccCChhhHHHHhcc
Q 035828 114 FVNMYAKCGDLNSSECTFSG 133 (781)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~ 133 (781)
.+...+..|+.+-+..+++.
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHhC
Confidence 34444455666666555554
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.59 E-value=66 Score=32.89 Aligned_cols=60 Identities=7% Similarity=-0.026 Sum_probs=33.4
Q ss_pred ccchhHHHHHhhcCCchhHHHHhhhhcCCCc-chhhH-------HHHHHHhcCCchhhHHHHHHHHhc
Q 035828 8 PTSTSLLTAYSNVSYFESSLALFYETCNKDV-VTWNA-------MITACVENRCVVMGLHFFGEMVEE 67 (781)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-------li~~~~~~~~~~~a~~~~~~m~~~ 67 (781)
.++|.|++-|...+.++.|..+.++...|.. .+-+. +...+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4566677777777777777777766554422 11111 123344456666666666665543
No 321
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.33 E-value=2.1e+02 Score=26.38 Aligned_cols=214 Identities=10% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCCCccchhHHHHHhhcCCchhHHH--------------HhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCC
Q 035828 4 LAHLPTSTSLLTAYSNVSYFESSLA--------------LFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGI 69 (781)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~a~~--------------~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 69 (781)
+++.....+.+...+..|+.++..+ +-......+..-++.|..+..... .++++.+.+.|.
T Consensus 9 ~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~ 83 (285)
T 3d9h_A 9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-----QLSLRNLISQGW 83 (285)
T ss_dssp ---------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-----HHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-----HHHHHHHHHCCC
Q ss_pred CCChhhHH--HHHHHHhccCcccchhHHHHHHHHhcCCCCcchhh--hHHHHhhccCChhhHHHHhccCCCCCeeeh-HH
Q 035828 70 RFDSTTLL--IIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCN--VFVNMYAKCGDLNSSECTFSGMHCADTVSW-NT 144 (781)
Q Consensus 70 ~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 144 (781)
.++..... +.+...+..|+. ++++.+.+.|..++..... +-+...+..|..+-+..+++.-..++.... .+
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t 159 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHL----SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS 159 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCH----HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSC
T ss_pred CCCCcCCCCCCHHHHHHHCCcH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_pred HHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHH--HHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 035828 145 IMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLS--SAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYS 222 (781)
Q Consensus 145 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 222 (781)
.+...+..|+.+ +++.+.+.|..++..... ..+...+..|+.+.++.+++. |...+. .....+.+...+
T Consensus 160 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~-~~~g~t~L~~A~ 230 (285)
T 3d9h_A 160 PIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GADVNQ-GKGQDSPLHAVV 230 (285)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TCCTTC-CBTTBCHHHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CCCCCC-CCCCCCHHHHHH
Q ss_pred hcCChhHHHHHhc
Q 035828 223 QCGDIEAAERAFW 235 (781)
Q Consensus 223 ~~g~~~~a~~~~~ 235 (781)
+.|+.+-+.-+++
T Consensus 231 ~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 231 RTASEELACLLMD 243 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.11 E-value=2e+02 Score=25.24 Aligned_cols=91 Identities=8% Similarity=-0.092 Sum_probs=45.5
Q ss_pred hHHHHHhhcCCchhHHHHhhh-hcCC---CcchhhHHHHHHHhcCCchhhHHHHHHHHhcC----CCCChhhHHHHHHHH
Q 035828 12 SLLTAYSNVSYFESSLALFYE-TCNK---DVVTWNAMITACVENRCVVMGLHFFGEMVEEG----IRFDSTTLLIIVSAL 83 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~ 83 (781)
+.+....+.|+.+.+..+++. ...+ |..-+ +.+...+..|+.+-+..+++.-.... ...+..-.+.|..+
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A- 82 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA- 82 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH-
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH-
Confidence 345556678888888888876 3333 22223 34555566677665555554321110 00111223333333
Q ss_pred hccCcccchhHHHHHHHHhcCCCCc
Q 035828 84 TQMNCLKQGRVVHCLSIKAGMIADS 108 (781)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~ 108 (781)
+..|+ .++++.+.+.|..++.
T Consensus 83 ~~~~~----~~~v~~Ll~~g~~~~~ 103 (232)
T 2rfa_A 83 VINQN----VNLVRALLARGASVSA 103 (232)
T ss_dssp HHTTC----HHHHHHHHHTTCCTTC
T ss_pred HHcCC----HHHHHHHHhCCCCCCc
Confidence 34444 3456666666766554
No 323
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=38.89 E-value=1.4e+02 Score=25.25 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSAC 665 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 665 (781)
+....+++.+.+.|+-.|... -.+.+....+.|.+ ....+-.++..+|+.++. ....+..+
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rf----------------A~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~~--I~~al~~~ 110 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNY----------------AESYVRTMMNTSDK-GPKVIKLNLSKKGIDDNI--AEDALILY 110 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHH----------------HHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHHH--HHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHH----------------HHHHHHHHHHcccc-cHHHHHHHHHHcCCCHHH--HHHHHHhC
Confidence 344566666777776655542 22333334433322 235666777788876542 22222221
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcC-ChHHHHHHHHhCCCCC
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG-KLQEAYEFIKNLPIQP 721 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~p 721 (781)
......+.|..++++-...+.-.++.....-++..+.+.| .++.+..+++.+...|
T Consensus 111 ~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 111 TDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCC
Confidence 1112234555555554333111111233445566666666 4444555555553333
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.75 E-value=1.7e+02 Score=25.94 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+....+|..|...|+-..... .|......+...|++.+|.++|+.-.+.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~Al---------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSI---------------FYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 467788888988887665543 588888888999999999999999988888884
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.16 E-value=86 Score=25.84 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHcC
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKDV---VSWNAIIDGFALNGK--FEEAFDLLHEMQLMR 272 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 272 (781)
..+.++.-|...|+.++|.+.++++..|.. .....+..++=+.++ .+.+..++..+...+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 456678888888999999999998876621 223334444444322 456777788887666
No 326
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.46 E-value=52 Score=33.74 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=38.7
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.|++..--...++.|...+.++ ...| +...++.++-.....|+.-.|.-.|-+.+.-..+.+.+..+|...+.+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3444333344455666665554 2333 333555555555555666666666665555554455566666555543
No 327
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.31 E-value=1.8e+02 Score=26.45 Aligned_cols=19 Identities=0% Similarity=0.015 Sum_probs=10.5
Q ss_pred HHHhhccCChhhHHHHhcc
Q 035828 115 VNMYAKCGDLNSSECTFSG 133 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~ 133 (781)
+...++.|+.+-+..+++.
T Consensus 105 L~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 105 LHIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3334455666666666654
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.14 E-value=1.1e+02 Score=24.81 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455555555666677777777777655555555444444444444
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.92 E-value=90 Score=25.63 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhccC-cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChh
Q 035828 62 GEMVEEGIRFDSTTLLIIVSALTQMN-CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLN 125 (781)
Q Consensus 62 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 125 (781)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-|..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 445667777665544 3455555555 67778888888877776666666666677777776554
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.38 E-value=88 Score=25.69 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChh
Q 035828 61 FGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLN 125 (781)
Q Consensus 61 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 125 (781)
.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3446667776654433 445555556667888888888888776667777777777777776543
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.74 E-value=86 Score=25.17 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=37.9
Q ss_pred HHHhcCCCCChhhHHHHHHHHhccC-cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChh
Q 035828 63 EMVEEGIRFDSTTLLIIVSALTQMN-CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLN 125 (781)
Q Consensus 63 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 125 (781)
.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35566766655443 3445555555 66777888887777766666666666666666665543
No 332
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.43 E-value=3.6e+02 Score=26.51 Aligned_cols=172 Identities=9% Similarity=0.031 Sum_probs=93.1
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--GI 651 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~ 651 (781)
-+...+...|++.+|..++..+.+.--..|. -..+++. |-.-+..|...+++.++...+...... .+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev---------~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEV---------QLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 3555666677777777666666552222111 1223333 455677788889999999888877642 23
Q ss_pred CCCHHHHHHH----HHHhc-ccCcHHHHHHHHHHhHHHcCCCCC-----cchHHHHHHHhhhcCChHHHHHHHH-----h
Q 035828 652 RPTKSSVISL----LSACS-HSGLVDEGLQYYNNMLEEYDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIK-----N 716 (781)
Q Consensus 652 ~p~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~-----~ 716 (781)
.|++.....+ ...+. ..+++..|...|-+..+.+.-.-+ ...|..|...+. ++..+-..++. .
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~ 250 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAIT 250 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHT
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccc
Confidence 3444332222 22345 678999999998887655432111 123433333332 22222222221 1
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 717 LPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 717 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
. ..|....+..++.+ ...+++..-..+++.....-..|+...
T Consensus 251 ~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~ 292 (394)
T 3txn_A 251 Y-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQ 292 (394)
T ss_dssp T-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHH
T ss_pred c-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHH
Confidence 1 34555455555554 366788777777776544444455433
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.96 E-value=98 Score=25.18 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh
Q 035828 63 EMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL 124 (781)
Q Consensus 63 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (781)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34445555443332 23333333444555666666665555444555555555555555543
No 334
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=32.08 E-value=3.3e+02 Score=25.68 Aligned_cols=114 Identities=12% Similarity=0.003 Sum_probs=65.0
Q ss_pred HHHHHhhcCCchhHHHHhhhhc-CCCcc--hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhcc
Q 035828 13 LLTAYSNVSYFESSLALFYETC-NKDVV--TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQM 86 (781)
Q Consensus 13 l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~ 86 (781)
-+...++.|+.+....++.... .++.. .-.+.+...+..|+.+ +.+.+.+.|..++.. -.+.|. ..+..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 101 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLH-NACSY 101 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHHT
T ss_pred hHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHH-HHHHC
Confidence 3445567889998888887632 12211 1234555566667754 444455566555432 233333 33445
Q ss_pred CcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCC
Q 035828 87 NCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMH 135 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~ 135 (781)
|+ .++++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 102 g~----~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 148 (351)
T 3utm_A 102 GH----YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148 (351)
T ss_dssp TC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 54 456667777776665432 2245555667788888888877543
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.77 E-value=2.6e+02 Score=24.39 Aligned_cols=181 Identities=11% Similarity=-0.020 Sum_probs=89.5
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcc--hhhhHHHHhh
Q 035828 42 NAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSS--LCNVFVNMYA 119 (781)
Q Consensus 42 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~ 119 (781)
+..+...++.|+.+....+++.-...--.++..-.+.|..+ +..|+ .++++.+.+.|..++.. .-.+.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGH----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCc----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence 34566667778877777776653221112233333333333 34444 34555666666555432 1223445556
Q ss_pred ccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch--HHHHHHHhhccCChhHHH
Q 035828 120 KCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS--LSSAVAASACLGELSYGK 194 (781)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~ 194 (781)
..|+.+-+..+++.-..+ +...++.|. ..+..|+.+ +++.+.+.|..++... -...+...+..|+.+..+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLH-YAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 667777777666644322 222333333 334555554 3344445565554332 112344444556665544
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhcc
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 236 (781)
.++ +.|..++.......+.+...+..|+.+-+.-+++.
T Consensus 157 ~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 157 ILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHH----hcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 443 45544331111222344555677888777776655
No 336
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.30 E-value=2.6e+02 Score=24.22 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=21.4
Q ss_pred hHHHHHhhcCCchhHHHHhhhhcCCCcch--hhHHHHHHHhcCCch
Q 035828 12 SLLTAYSNVSYFESSLALFYETCNKDVVT--WNAMITACVENRCVV 55 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 55 (781)
+.+...++.|+.+-+..+++....++... -.+.+...+..|+.+
T Consensus 27 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 72 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred chHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 34444456677666666666544333221 123344444555544
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.15 E-value=1.6e+02 Score=28.26 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=15.9
Q ss_pred hhHHHHhhccCChhhHHHHhccCCCC
Q 035828 112 NVFVNMYAKCGDLNSSECTFSGMHCA 137 (781)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~~~~~ 137 (781)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34555566666666666666666554
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.35 E-value=1.1e+02 Score=25.56 Aligned_cols=64 Identities=6% Similarity=0.064 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHh--cCCCCcchhhhHHHHhhccCChh
Q 035828 61 FGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKA--GMIADSSLCNVFVNMYAKCGDLN 125 (781)
Q Consensus 61 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~ 125 (781)
-+.+.+.|++++..- ..++..+...++.-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 21 ~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 21 KKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334566787775543 45667777777888899999988887 66667667667777777777553
No 339
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.32 E-value=90 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=24.0
Q ss_pred hHHHHHHHHhcCCCCC-hhhHHHHHHHHhccCcccchhHHHHHHHHhcCCC
Q 035828 57 GLHFFGEMVEEGIRFD-STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIA 106 (781)
Q Consensus 57 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 106 (781)
+.++|..|..+|+-.. +.-|..-...+...|++.+|.+|++..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544322 2334444444445555555555555555544444
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.19 E-value=2e+02 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCC
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCK 240 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 240 (781)
-...++.-|...|+.++|.+.++++..|
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3455666666777777777777777654
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.92 E-value=1.2e+02 Score=24.32 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 623 WSSMISAYGYHG-KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 623 ~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
-..++..+...+ +.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555555555 66778888888877665556555444444444443
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.12 E-value=1.1e+02 Score=25.57 Aligned_cols=55 Identities=5% Similarity=0.078 Sum_probs=41.7
Q ss_pred CcchhhHHHHHHHhcCCchhhHHHHHHHHhc--CCCCChhhHHHHHHHHhccCcccc
Q 035828 37 DVVTWNAMITACVENRCVVMGLHFFGEMVEE--GIRFDSTTLLIIVSALTQMNCLKQ 91 (781)
Q Consensus 37 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~ 91 (781)
-+.--..++..+...+.+-.|.++++.+.+. +...+..|.---|..+...|-+..
T Consensus 31 ~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 31 YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3344567788888888999999999999988 777777777666777777665443
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.07 E-value=3.3e+02 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 035828 213 VTNSLISMYSQCGDIEAAERAFWGMTCKD 241 (781)
Q Consensus 213 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 241 (781)
...++|.-|...|++++|.+.++++..|+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 34556666777777777777777776553
No 344
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=28.84 E-value=2.3e+02 Score=25.67 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=10.3
Q ss_pred HHHHHhcCChhHHHHHhcc
Q 035828 218 ISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 218 l~~~~~~g~~~~a~~~~~~ 236 (781)
+...+..|+.+-+.-+++.
T Consensus 196 L~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 196 LHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444556666665555544
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.48 E-value=3e+02 Score=24.10 Aligned_cols=85 Identities=7% Similarity=-0.108 Sum_probs=45.1
Q ss_pred HHHHhccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCCCC---CeeehHHHHHHHhhCCC
Q 035828 80 VSALTQMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMHCA---DTVSWNTIMSGCLHNNY 154 (781)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~ 154 (781)
+...++.|+.+....+++.+.+.+..++... -.+.+...+..|+.+-+..+++.-..+ +...++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 3444566777777777776666665554322 234455556677777666666543322 2222233 333345566
Q ss_pred hhhHHHHHHHH
Q 035828 155 PEKCLLYFREM 165 (781)
Q Consensus 155 ~~~a~~~~~~m 165 (781)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 55544444443
No 346
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.46 E-value=2.3e+02 Score=24.81 Aligned_cols=150 Identities=8% Similarity=-0.041 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHhcCCCCCh---hhHHHHHHHHhccCcccchhHHHHHHHHhcCCC-----Cc--chhh
Q 035828 43 AMITACVENRCVVMGLHFFGEMVEEGIRFDS---TTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIA-----DS--SLCN 112 (781)
Q Consensus 43 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~ 112 (781)
+.+...++.|+.+.+..+++. .|..++. .-++.| ...+..|+.+ +.+.+.+.|..+ +. ..-.
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETAL-HIAALYDNLE----AAMVLMEAAPELVFEPMTSELYEGQ 76 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCchhccccccccCCCCc
Confidence 345555666766555444432 1444332 223333 3334455544 444444444322 11 1223
Q ss_pred hHHHHhhccCChhhHHHHhccCCCCCe----------------eehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch
Q 035828 113 VFVNMYAKCGDLNSSECTFSGMHCADT----------------VSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS 176 (781)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 176 (781)
+-+...+..|+.+-+..+++.-..++. ...+.| ...+..|+.+ +++.+.+.|..++...
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEE----IVRLLIEHGADIRAQD 151 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHH----HHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC
Confidence 445555667777777777765433222 123333 3334444443 3444445565554321
Q ss_pred --HHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035828 177 --LSSAVAASACLGELSYGKVIHALGIKLGY 205 (781)
Q Consensus 177 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 205 (781)
-.+.+...+..|+.+.+..+.+.+.+.|.
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 11233444455566555555555555554
No 347
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.08 E-value=99 Score=25.17 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444455555 6678888888877665556655544444544444
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.82 E-value=1.3e+02 Score=24.66 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 624 SSMISAYGYHG-KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 624 ~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
..++..+...+ +.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555 56678888888877765556665555555555554
No 349
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.43 E-value=2.9e+02 Score=25.01 Aligned_cols=116 Identities=8% Similarity=-0.054 Sum_probs=62.0
Q ss_pred hHHHHHhhcCCchhHHHHhhhhc-------C----CCcchhhHHHHHHH--hcCCchhhHHHHHHHHhc---------CC
Q 035828 12 SLLTAYSNVSYFESSLALFYETC-------N----KDVVTWNAMITACV--ENRCVVMGLHFFGEMVEE---------GI 69 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~-------~----~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~---------~~ 69 (781)
+.+...++.|+++.+..+++... . .+..-++.|..++. +.|+.+-+..+++.-... +.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 33444566788888888887432 1 12333555555543 347777776666653221 11
Q ss_pred C-CChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcch----------------hhhHHHHhhccCChhhHHHHhc
Q 035828 70 R-FDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSL----------------CNVFVNMYAKCGDLNSSECTFS 132 (781)
Q Consensus 70 ~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~a~~~~~ 132 (781)
. .+..-.+.|..++ ..|+ .++.+.+.+.|..++... -.+-+...+..|+.+-+..+++
T Consensus 95 ~~~d~~g~tpL~~A~-~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 95 TDSYYKGQTALHIAI-ERRN----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CSTTTTTCCHHHHHH-HTTC----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCCHHHHHH-HcCC----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1 2223333444343 4454 345666667776665543 2344555556677766666666
No 350
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.22 E-value=1e+02 Score=27.83 Aligned_cols=54 Identities=2% Similarity=-0.279 Sum_probs=34.4
Q ss_pred HHHHHhccCcccchhHHHHHHHHhcCCCCc-------chhhhHHHHhhcc---CChhhHHHHhcc
Q 035828 79 IVSALTQMNCLKQGRVVHCLSIKAGMIADS-------SLCNVFVNMYAKC---GDLNSSECTFSG 133 (781)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~ 133 (781)
.+...++.|+.+....+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhc
Confidence 344556788889888899988888876554 22333 3334444 666666666543
No 351
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.71 E-value=1e+02 Score=25.73 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcCCCCC-hhhHHHHHHHHhccCcccchhHHHHHHHHhcCCC
Q 035828 57 GLHFFGEMVEEGIRFD-STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIA 106 (781)
Q Consensus 57 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 106 (781)
+.++|..|..+|+-.. +.-|..-...+...|++..|.+|++..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555544332 2334444444444455555555555555544444
No 352
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=26.67 E-value=1.1e+02 Score=19.48 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=21.5
Q ss_pred CChHHHHHHHHhCCCCCCcchHHHHHHHHHh-cCCcHHHHHHH
Q 035828 705 GKLQEAYEFIKNLPIQPKPGVWGAMLSACSH-HGDTKMGKQVA 746 (781)
Q Consensus 705 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~ 746 (781)
.++++.++-+.+|++.+.... +.++.. .|+.+.|.+++
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~----~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREAN----LQALIATGGDINAAIERL 48 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHH----HHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHH----HHHHHHhCCCHHHHHHHH
Confidence 356666777777776443322 223333 46777777665
No 353
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.50 E-value=3.7e+02 Score=24.47 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=80.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH-SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
+.......+++++..+...++.+.|...+..-.+.|-.+|-. .|....+..++..+.++...+.+ .....++.-|-+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~-~~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhcccc-HHHHHHHHHHHHH
Confidence 344456789999999999999988877777666655555533 34555666666665443111222 2223344333211
Q ss_pred --C----ChHHHHHHHHhC--C--CCCCc-chHHHHHHHH------HhcCC-----cHHHHHHHHHHhc-----cCCCCC
Q 035828 705 --G----KLQEAYEFIKNL--P--IQPKP-GVWGAMLSAC------SHHGD-----TKMGKQVAELLFK-----LEPENV 757 (781)
Q Consensus 705 --g----~~~~A~~~~~~~--~--~~p~~-~~~~~l~~~~------~~~g~-----~~~A~~~~~~~~~-----~~p~~~ 757 (781)
. --.+.++++++. + ..+.. +.|..+-.=| ...|+ .+.|.+.|+++.+ +.|-+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 0 112344555544 1 11111 1222221111 11222 3566777777664 345566
Q ss_pred chHHHH---HHH-HHhcCChhhHHhhcC
Q 035828 758 GYYISL---SNM-YVALGRWKDAVEIGK 781 (781)
Q Consensus 758 ~~~~~l---~~~-~~~~g~~~~A~~l~~ 781 (781)
-.+-+. +.. |.-.++.++|+++.|
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk 223 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAK 223 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 432221 122 445799999998754
No 354
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.10 E-value=1.4e+02 Score=24.52 Aligned_cols=51 Identities=6% Similarity=0.062 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCccc
Q 035828 40 TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLK 90 (781)
Q Consensus 40 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 90 (781)
.-..++..+...+.+-.|.++++.+.+.+...+..|.--.|..+...|-+.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345677778787889999999999999887777777777777777766443
No 355
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.94 E-value=3e+02 Score=23.26 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=36.3
Q ss_pred HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCC
Q 035828 576 LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY-HGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 576 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+...+..|+.+.-.++.+.+++.|..++.. +..-++.|..+... ..+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSR-------------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333444566666667778888888887764 11122223222211 2233444566667777776665
Q ss_pred H
Q 035828 655 K 655 (781)
Q Consensus 655 ~ 655 (781)
.
T Consensus 109 ~ 109 (186)
T 3t8k_A 109 A 109 (186)
T ss_dssp S
T ss_pred c
Confidence 3
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.93 E-value=1.2e+02 Score=24.05 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC
Q 035828 44 MITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN 87 (781)
Q Consensus 44 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 87 (781)
++..+...+.+-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 45555555566666777777666655555555555555555554
No 357
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.84 E-value=1.6e+02 Score=23.87 Aligned_cols=35 Identities=9% Similarity=-0.121 Sum_probs=17.0
Q ss_pred ccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC
Q 035828 89 LKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD 123 (781)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 123 (781)
.-.|.++++.+.+.+...+..|...-|+.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555554444444444444444444443
No 358
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.78 E-value=94 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=27.1
Q ss_pred HHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccC
Q 035828 145 IMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLG 188 (781)
Q Consensus 145 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 188 (781)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 45555556667777777777777665556555555555554444
No 359
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.21 E-value=45 Score=22.12 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCH
Q 035828 255 NGKFEEAFDLLHEMQLMRSVEPDI 278 (781)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~pd~ 278 (781)
.-+++.|+..|.++...|.|+|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 557899999999998877677764
No 360
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.12 E-value=71 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 035828 53 CVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQ 85 (781)
Q Consensus 53 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 85 (781)
+.+.|..+++.+.++| ..+|..++.++..
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~e 80 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLED 80 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHH
Confidence 4455555555554443 2344455555543
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.82 E-value=1.1e+02 Score=24.58 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=20.2
Q ss_pred HHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC
Q 035828 44 MITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN 87 (781)
Q Consensus 44 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 87 (781)
++..+...+.+-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555444444444433344443333
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.40 E-value=2.3e+02 Score=22.70 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=5.3
Q ss_pred hcCChhHHHHHhc
Q 035828 223 QCGDIEAAERAFW 235 (781)
Q Consensus 223 ~~g~~~~a~~~~~ 235 (781)
..|+.+-+.-+++
T Consensus 110 ~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 110 QEGHTAVVSFLAA 122 (156)
T ss_dssp HHTCHHHHHHHHT
T ss_pred HhChHHHHHHHHh
Confidence 3344444444433
No 363
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.08 E-value=1.1e+02 Score=22.88 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=29.5
Q ss_pred CChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHH
Q 035828 520 RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRA 556 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 556 (781)
...+.|.++++.++..+..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888899988888888888888888776765544
No 364
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.03 E-value=4.2e+02 Score=23.91 Aligned_cols=155 Identities=9% Similarity=0.034 Sum_probs=81.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc-cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH-SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
+.......+++++..+..+.+.+.|...+..-.+.|-.+|-. .|....+..++..+.+..... ...-...++.-|-+.
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~-~~~~~~~~i~~yr~k 88 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSAD-GNEKKIEMVRAYREK 88 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC-HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHH
Confidence 344456789999999999999988888887666666656633 455566777776665542111 111222333333211
Q ss_pred ------CChHHHHHHHHhC--C--CCC---CcchHHHHHHHHH------hcCC-----cHHHHHHHHHHhc-----cCCC
Q 035828 705 ------GKLQEAYEFIKNL--P--IQP---KPGVWGAMLSACS------HHGD-----TKMGKQVAELLFK-----LEPE 755 (781)
Q Consensus 705 ------g~~~~A~~~~~~~--~--~~p---~~~~~~~l~~~~~------~~g~-----~~~A~~~~~~~~~-----~~p~ 755 (781)
.--.+.+.++++. + ..+ +-+.|..+-.=|. ..|+ .+.|.+.|+.+.+ +.|-
T Consensus 89 ie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pt 168 (248)
T 3uzd_A 89 IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPT 168 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 0112445555554 1 122 1122222211111 1222 3566777777654 3455
Q ss_pred CCchHHHH---HH-HHHhcCChhhHHhhcC
Q 035828 756 NVGYYISL---SN-MYVALGRWKDAVEIGK 781 (781)
Q Consensus 756 ~~~~~~~l---~~-~~~~~g~~~~A~~l~~ 781 (781)
+|-.+-+. +- .|.-.++.++|+++.|
T Consensus 169 hPirLGLaLNfSVFyYEIln~~~~Ac~lAk 198 (248)
T 3uzd_A 169 HPIRLGLALNYSVFYYEIQNAPEQACHLAK 198 (248)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66432221 11 2556799999998753
No 365
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.93 E-value=91 Score=25.18 Aligned_cols=43 Identities=5% Similarity=-0.038 Sum_probs=24.1
Q ss_pred HHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhcc
Q 035828 145 IMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACL 187 (781)
Q Consensus 145 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 187 (781)
++..+...+..-.|.++++.+.+.+...+..|....|+.+...
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 4455555555666777777776666555555544444444333
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.47 E-value=1.6e+02 Score=25.30 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHhhhcCChHHHHHHHHh
Q 035828 699 DMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~ 716 (781)
-.|.+.|.+++|.++|++
T Consensus 125 ~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHH
Confidence 345555555555555555
No 367
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.95 E-value=3.1e+02 Score=22.20 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=10.3
Q ss_pred HHHhhcCCchhHHHHhhh
Q 035828 15 TAYSNVSYFESSLALFYE 32 (781)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~ 32 (781)
....+.|+++....+++.
T Consensus 13 ~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHTCHHHHHHHCCT
T ss_pred HHHHHhCCHHHHHHHHHc
Confidence 334455666666666653
No 368
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.64 E-value=3.9e+02 Score=23.08 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=32.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
.+..+.+.|+-++.+|.+.| .|....-..++.+...-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 46789999999999999999 8887777777777777664
No 369
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=21.18 E-value=4.4e+02 Score=25.37 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=10.5
Q ss_pred HHHHHhcCChhHHHHHhcc
Q 035828 218 ISMYSQCGDIEAAERAFWG 236 (781)
Q Consensus 218 l~~~~~~g~~~~a~~~~~~ 236 (781)
+...+..|+.+-+..+++.
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~ 301 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGE 301 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556666666666543
No 370
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.90 E-value=2.7e+02 Score=25.45 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=33.2
Q ss_pred hHHHHhhccCChhhHHHHhccCC----CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCC
Q 035828 113 VFVNMYAKCGDLNSSECTFSGMH----CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQAD 173 (781)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 173 (781)
+.+...++.|+.+-+..+++.-. ..+...++.+..+.........-.++++.+.+.|..++
T Consensus 113 T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~ 177 (276)
T 4hbd_A 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA 177 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc
Confidence 44455567778777777776442 23444455555554433334445555666656554443
No 371
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.81 E-value=1.4e+02 Score=26.34 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhcC-----CCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCC-cchhhhHHHHhhccCChhhHHH
Q 035828 56 MGLHFFGEMVEEG-----IRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIAD-SSLCNVFVNMYAKCGDLNSSEC 129 (781)
Q Consensus 56 ~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~ 129 (781)
.-..++++..+.- .+-|. -|..+=--|+. ..+.+..+|..|...|+--. ...|-.....+-..|++.+|.+
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~-RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDV-RYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCH-HHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCH-HHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3556666666542 22232 23222222332 24678889999998886544 4566677777888899999999
Q ss_pred HhccCCCCCeeehHHHHHHH
Q 035828 130 TFSGMHCADTVSWNTIMSGC 149 (781)
Q Consensus 130 ~~~~~~~~~~~~~~~li~~~ 149 (781)
+|+.-.+........|...+
T Consensus 172 Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 172 VYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp HHHHHHHHTCBSHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHH
Confidence 99866555555555555543
No 372
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.63 E-value=4.1e+02 Score=22.90 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=8.2
Q ss_pred HHhhcCCchhHHHHhhh
Q 035828 16 AYSNVSYFESSLALFYE 32 (781)
Q Consensus 16 ~~~~~~~~~~a~~~~~~ 32 (781)
...+.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 8 QACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 33444555555555544
No 373
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.25 E-value=3.9e+02 Score=22.51 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=43.9
Q ss_pred hhcCCchhHHHHhhhhcCC-CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHhc-cCcccch
Q 035828 18 SNVSYFESSLALFYETCNK-DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALTQ-MNCLKQG 92 (781)
Q Consensus 18 ~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~-~~~~~~a 92 (781)
++.|+++....++...... +...-.+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|.-++.. ..+....
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~ 93 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH
Confidence 4667777777666543211 10112344555555665555556666677777665542 12222222211 1122223
Q ss_pred hHHHHHHHHhcCCCCc
Q 035828 93 RVVHCLSIKAGMIADS 108 (781)
Q Consensus 93 ~~~~~~~~~~~~~~~~ 108 (781)
.++.+.+++.|..++.
T Consensus 94 ~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 94 TELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHCCCCCCc
Confidence 4555556666655543
No 374
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.16 E-value=2.3e+02 Score=19.84 Aligned_cols=61 Identities=3% Similarity=0.058 Sum_probs=40.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccc-chhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 035828 267 EMQLMRSVEPDIATVVTLISLCADSL-LLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSL 329 (781)
Q Consensus 267 ~m~~~~~~~pd~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 329 (781)
.+.+.| +..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~g-~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAG-LKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTT-CCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcC-CCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 355555 7776655 34556666554 5677888888888877766777766666766665543
Done!