BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035829
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 188/418 (44%), Gaps = 37/418 (8%)
Query: 4 SSPTPKHLRTYKLSLPDQLCSKLYVSLVFFYSTNCKQQ-DLRKKSDLLKQSLAKSLTHYY 62
SSPTP+ L+ YK+S DQL ++ + FY D + S LKQSL+K LTH+Y
Sbjct: 16 SSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFY 75
Query: 63 PFAGRLIDSFSVDCNDHGAAFTGAAIVGCDISKFLQP-PDMEXXXXXXXXXXXX-XXXDI 120
P AGR+ + SVDCND G F A V +S+ +Q ++E ++
Sbjct: 76 PLAGRINVNSSVDCNDSGVPFVEAR-VQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEV 134
Query: 121 SERELLAVQVNLFSGGEMAIGVCFSHGVADGSAIFNFMKTSGEITRGXXXXXXXXXXXXX 180
+E LAV+++ F G AIGV SH +AD ++ F+ RG
Sbjct: 135 NEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDL-- 192
Query: 181 XLDCTSLFPPV-NFPKPYQIVTSPQSSGNIVFKRLLFDSKKIAALKEKMNKELMGNNFDD 239
FPPV N P P + N+V KR +FD +KI AL+ + + NF
Sbjct: 193 ---AARHFPPVDNTPSPELV-----PDENVVMKRFVFDKEKIGALRAQASSASEEKNF-- 242
Query: 240 RLQATRFGVASALIWGAFIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIPRCRGNI 299
+R + A IW I + K NK + +N+R++ NPP+ GNI
Sbjct: 243 ----SRVQLVVAYIWKHVIDVT-RAKYGAKNKF---VVVQAVNLRSRMNPPLPHYAMGNI 294
Query: 300 ----FWFARAEWSLAENDAIKVASLVREVIKAKRMGGEVMHSNEHLGFIKDMEETWEDSR 355
F AEW D I ++ E H++E L + + E E
Sbjct: 295 ATLLFAAVDAEWDKDFPDLIG-------PLRTSLEKTEDDHNHELLKGMTCLYEL-EPQE 346
Query: 356 SFVLTSVVGLPCYEVDFGWGKPVWFSVGPFLLLDFAILSSSSDGEGIEAWVVMFKEDM 413
TS L Y++DFGWGKP+ F + A+L + G+G+EAW+ M +++M
Sbjct: 347 LLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEM 404
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 167/415 (40%), Gaps = 66/415 (15%)
Query: 20 DQLCSKLYVSLVFFYSTNCKQQDLRKKSDLLKQSLAKSLTHYYPFAGRLI----DSFSVD 75
D + + V+FY K +LK +L+++L +YP AGRL ++
Sbjct: 33 DLVVPNFHTPSVYFYRPTGSSNFFDAK--VLKDALSRALVPFYPMAGRLKRDEDGRIEIE 90
Query: 76 CNDHGAAFTGAAIVGC--DISKFLQPPDMEXXXXXXXXXXXXXXXDISERELLAVQVNLF 133
CN G F A G D F P +E IS LL +QV F
Sbjct: 91 CNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQ---GISSYALLVLQVTYF 145
Query: 134 SGGEMAIGVCFSHGVADGSAIFNFMKTSGEITRGXXXXXXXXXXXXXXLDCTSL------ 187
G +++GV H ADG + +F+ + ++ RG +D T L
Sbjct: 146 KXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG------LDVTLPPFIDRTLLRARDPP 199
Query: 188 ---FPPVNFPKPYQIVTSPQSSGN--------IVFKRLLFDSKKIAALKEKMNKELMGNN 236
F + + P + SPQ++ + +FK ++I+ALK K ++ GN
Sbjct: 200 QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK---LTREQISALKAKSKED--GNT 254
Query: 237 FDDRLQATRFGVASALIWGAFIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIPRCR 296
+ + + + + +W R E+ +Y + R + P + P
Sbjct: 255 ----ISYSSYEMLAGHVWR---CACKARGLEVDQ---GTKLYIATDGRARLRPSLPPGYF 304
Query: 297 GNIFWFARAEWSLAENDAIK----VASLVREVIKAKRMGGEVMHSN-EHLGFIKDMEETW 351
GN+ F ++A + K AS + + + RM + + S ++L D++
Sbjct: 305 GNVI-FTATPIAIAGDLEFKPVWYAASKIHDAL--ARMDNDYLRSALDYLELQPDLKALV 361
Query: 352 EDSRSFV-----LTSVVGLPCYEVDFGWGKPVWFSVG--PFLLLDFAILSSSSDG 399
+ +F +TS V LP ++ DFGWG+P++ G + L F + S ++DG
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDG 416
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 167/415 (40%), Gaps = 66/415 (15%)
Query: 20 DQLCSKLYVSLVFFYSTNCKQQDLRKKSDLLKQSLAKSLTHYYPFAGRLIDS----FSVD 75
D + + V+FY K +LK +L+++L +YP AGRL ++
Sbjct: 33 DLVVPNFHTPSVYFYRPTGSSNFFDAK--VLKDALSRALVPFYPMAGRLKRDEDGRIEIE 90
Query: 76 CNDHGAAFTGAAIVGC--DISKFLQPPDMEXXXXXXXXXXXXXXXDISERELLAVQVNLF 133
CN G F A G D F P +E IS LL +QV F
Sbjct: 91 CNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQ---GISSYALLVLQVTYF 145
Query: 134 SGGEMAIGVCFSHGVADGSAIFNFMKTSGEITRGXXXXXXXXXXXXXXLDCTSL------ 187
G +++GV H ADG + +F+ + ++ RG +D T L
Sbjct: 146 KCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPF------IDRTLLRARDPP 199
Query: 188 ---FPPVNFPKPYQIVTSPQSSGN--------IVFKRLLFDSKKIAALKEKMNKELMGNN 236
F + + P + SPQ++ + +FK ++I+ALK K ++ GN
Sbjct: 200 QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK---LTREQISALKAKSKED--GNT 254
Query: 237 FDDRLQATRFGVASALIWGAFIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIPRCR 296
+ + + + + +W R E+ +Y + R + P + P
Sbjct: 255 ----ISYSSYEMLAGHVWRC---ACKARGLEVDQ---GTKLYIATDGRARLRPSLPPGYF 304
Query: 297 GNIFWFARAEWSLAENDAIK----VASLVREVIKAKRMGGEVMHSN-EHLGFIKDMEETW 351
GN+ F ++A + K AS + + + RM + + S ++L D++
Sbjct: 305 GNVI-FTATPIAIAGDLEFKPVWYAASKIHDALA--RMDNDYLRSALDYLELQPDLKALV 361
Query: 352 EDSRSFV-----LTSVVGLPCYEVDFGWGKPVWFSVG--PFLLLDFAILSSSSDG 399
+ +F +TS V LP ++ DFGWG+P++ G + L F + S ++DG
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDG 416
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 167/415 (40%), Gaps = 66/415 (15%)
Query: 20 DQLCSKLYVSLVFFYSTNCKQQDLRKKSDLLKQSLAKSLTHYYPFAGRLIDS----FSVD 75
D + + V+FY K +LK +L+++L +YP AGRL ++
Sbjct: 30 DLVVPNFHTPSVYFYRPTGSSNFFDAK--VLKDALSRALVPFYPMAGRLKRDEDGRIEIE 87
Query: 76 CNDHGAAFTGAAIVGC--DISKFLQPPDMEXXXXXXXXXXXXXXXDISERELLAVQVNLF 133
CN G F A G D F P +E IS LL +QV F
Sbjct: 88 CNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQ---GISSYALLVLQVTYF 142
Query: 134 SGGEMAIGVCFSHGVADGSAIFNFMKTSGEITRGXXXXXXXXXXXXXXLDCTSL------ 187
G +++GV H ADG + +F+ + ++ RG +D T L
Sbjct: 143 KCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPF------IDRTLLRARDPP 196
Query: 188 ---FPPVNFPKPYQIVTSPQSSGN--------IVFKRLLFDSKKIAALKEKMNKELMGNN 236
F + + P + SPQ++ + +FK ++I+ALK K ++ GN
Sbjct: 197 QPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFK---LTREQISALKAKSKED--GNT 251
Query: 237 FDDRLQATRFGVASALIWGAFIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIPRCR 296
+ + + + + +W R E+ +Y + R + P + P
Sbjct: 252 ----ISYSSYEMLAGHVWRC---ACKARGLEVDQ---GTKLYIATDGRARLRPSLPPGYF 301
Query: 297 GNIFWFARAEWSLAENDAIK----VASLVREVIKAKRMGGEVMHSN-EHLGFIKDMEETW 351
GN+ F ++A + K AS + + + RM + + S ++L D++
Sbjct: 302 GNVI-FTATPIAIAGDLEFKPVWYAASKIHDALA--RMDNDYLRSALDYLELQPDLKALV 358
Query: 352 EDSRSFV-----LTSVVGLPCYEVDFGWGKPVWFSVG--PFLLLDFAILSSSSDG 399
+ +F +TS V LP ++ DFGWG+P++ G + L F + S ++DG
Sbjct: 359 RGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDG 413
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 141/376 (37%), Gaps = 86/376 (22%)
Query: 50 LKQSLAKSLTHYYPFAGRLI----------------DSFSV---DCNDHGAAFTGAAIVG 90
+K SL+ +L H+YPF G+L+ DS +V +CN TG
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 91 CDISKFLQPPDMEXXXXXXXXXXXXXXXDISERELLAVQVNLFSGGEMAIGVCFSHGVAD 150
CD L P E D + L +VQV LF +AIG+ H + D
Sbjct: 125 CDKFYDLVPILGESTRLS----------DCIKIPLFSVQVTLFPNQGIAIGITNHHCLGD 174
Query: 151 GSAIFNFMKTSGEITR-GXXXXXXXXXXXXXXLDCTSLFPPVN-----------FPKPY- 197
S F F+K I R G D +P ++ F + Y
Sbjct: 175 ASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYV 234
Query: 198 -QIVTSPQSSGNIVFKRLLFDSKKIAALKEKMNKELMGNNFDDRLQATRFGVASALIWGA 256
Q + P F + I LK+++ +L + + F VA A IW
Sbjct: 235 TQSLAGPSDKLRATF---ILTRAVINQLKDRVLAQLPTLEY-----VSSFTVACAYIWS- 285
Query: 257 FIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIP-----RCRGNIFWFARAEWSLAE 311
IA R ++ +L+ + ++ R + PP IP C G A+ + +
Sbjct: 286 --CIAKSRNDKL--QLFG----FPIDRRARMKPP-IPTAYFGNCVGGCAAIAKTNLLIGK 336
Query: 312 NDAIKVASLVREVIKAKRMGGEVMH---SNEHLGFIKDMEETWEDSRS----FVLTSVVG 364
I A L+ GE +H ++ G +KD E++ D S +T V G
Sbjct: 337 EGFITAAKLI----------GENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSG 386
Query: 365 LP---CYEVDFGWGKP 377
P Y++DFGWGKP
Sbjct: 387 TPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 139/376 (36%), Gaps = 86/376 (22%)
Query: 50 LKQSLAKSLTHYYPFAGRLI----------------DSFSV---DCNDHGAAFTGAAIVG 90
+K SL+ +L H+YPF G+L+ DS +V +CN TG
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 91 CDISKFLQPPDMEXXXXXXXXXXXXXXXDISERELLAVQVNLFSGGEMAIGVCFSHGVAD 150
CD L P E D + L +VQV LF +AIG+ H + D
Sbjct: 125 CDKFYDLVPILGESTRLS----------DCIKIPLFSVQVTLFPNQGIAIGITNHHCLGD 174
Query: 151 GSAIFNFMKTSGEITR-GXXXXXXXXXXXXXXLDCTSLFPPVN-----------FPKPY- 197
S F F+K I R G D +P ++ F + Y
Sbjct: 175 ASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYV 234
Query: 198 -QIVTSPQSSGNIVFKRLLFDSKKIAALKEKMNKELMGNNFDDRLQATRFGVASALIWGA 256
Q + P F + I LK+++ +L + + F VA A IW
Sbjct: 235 TQSLAGPSDKLRATF---ILTRAVINQLKDRVLAQLPTLEY-----VSSFTVACAYIWS- 285
Query: 257 FIAIAGERKREIHNKLYSHAMYYTMNVRNKTNPPMIP-----RCRGNIFWFARAEWSLAE 311
IA R ++ +L+ + ++ R + PP IP C G A+ + +
Sbjct: 286 --CIAKSRNDKL--QLFG----FPIDRRARXKPP-IPTAYFGNCVGGCAAIAKTNLLIGK 336
Query: 312 NDAIKVASLVREVIKAKRMGGEVMH---SNEHLGFIKDMEETWEDSRS----FVLTSVVG 364
I A L+ GE +H ++ G +KD E++ D S T V G
Sbjct: 337 EGFITAAKLI----------GENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSG 386
Query: 365 LP---CYEVDFGWGKP 377
P Y+ DFGWGKP
Sbjct: 387 TPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 105/275 (38%), Gaps = 40/275 (14%)
Query: 125 LLAVQVNLFSGGEMAIGVCFSHGVADGSAIFNFMKTSGEITRGXXXXXXXXXXXXXXLDC 184
+LA+QV LF ++IG H DG+ I F++ + + D
Sbjct: 144 VLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDR 203
Query: 185 TSLFPP-------VNFPKPYQ-------IVTSP-QSSGNIVFKRLLFDSKKIAALKEKMN 229
+ + P N K Y+ +VT P + G + R D K+ L
Sbjct: 204 SVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITR--HDIGKLKNLVLTRR 261
Query: 230 KELMGNNFDDRLQATRFGVASALIWGAFI---AIAGERKREIHNKLYSHAMYYTMNVRNK 286
+L T F V A +W I A GE E + + A + R +
Sbjct: 262 PKLT--------HVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAA----DCRAQ 309
Query: 287 TNPPMIPRCRGN--IFWFARA-EWSLAENDAIKVA-SLVREVIKAKRMGGEVMHSNEHLG 342
NPP+ P GN + + AR + LA + +A L+ E I+ + E + S
Sbjct: 310 FNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGS--- 366
Query: 343 FIKDMEETWEDSRSFVLTSVVGLPCYEVDFGWGKP 377
+ K+ ++ + RS + L Y DFGWG+P
Sbjct: 367 WFKEYDKV-DAKRSLSVAGSPKLDLYAADFGWGRP 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,068,548
Number of Sequences: 62578
Number of extensions: 454421
Number of successful extensions: 992
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 11
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)