BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035831
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 129/301 (42%), Gaps = 56/301 (18%)
Query: 97 DVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGII 156
DV S N P L D + + +D++GN ++G F + T+L L +++SN+F G I
Sbjct: 206 DVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 157 PDFSDWKLMF------------------------EFDVSNNRLVGSFP------------ 180
P L + D+S N G+ P
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 181 -------------RVVLSWPSLKFLDLRYNNFEGELPCDLFDMK--LDALFLNNNRFSYS 225
+L LK LDL +N F GELP L ++ L L L++N FS
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 226 IPEKL---GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKN 282
I L ++T+ + +N F G IP ++ N L + LS N LSG PS +GSL
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 283 LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQ 342
LR + N+ G +PQ +++++TLIL N LTG + + +L+ + S N
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 343 G 343
G
Sbjct: 504 G 504
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 9/229 (3%)
Query: 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFP 180
+ ++GN I+G ++ +L V+SN F IP D + D+S N+L G F
Sbjct: 183 LAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240
Query: 181 RVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRS--TVSVV 238
R + + LK L++ N F G +P L L L L N+F+ IP+ L + T++ +
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 239 TFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSE-IGSLKNLRVFDVSSNLFHGNV 297
+ N+F G +P G+ L + LS N SG P + + ++ L+V D+S N F G +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 298 PQSFSSLE-SIQTLILSHNQLTGFVSEQICKLP--SLSNFTFSYNYFQG 343
P+S ++L S+ TL LS N +G + +C+ P +L N F G
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 55/262 (20%)
Query: 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFE----FDV 170
+ + + L+ ND+ G P+ L T+L +++NR G IP W E +
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKL 521
Query: 171 SNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYSI-- 226
SNN G+ P + SL +LDL N F G +P +F K+ A F+ R+ Y
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 227 -------------------PEKLGR-------------------------STVSVVTFAH 242
E+L R ++ + ++
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 243 NNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFS 302
N +G IP+ IG+M L + L N +SG P E+G L+ L + D+SSN G +PQ+ S
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 303 SLESIQTLILSHNQLTGFVSEQ 324
+L + + LS+N L+G + E
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEM 723
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 12/240 (5%)
Query: 121 IDLNGNDIAGSFPAEL-GLLTDLALFHVNSNRFCG-IIPDFSD--WKLMFEFDVSNNRLV 176
+DL+ N+ +G P L L L ++SN F G I+P+ + E + NN
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 177 GSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-ST 234
G P + + L L L +N G +P L + KL L L N IP++L T
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 235 VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFH 294
+ + N+ G IP + N NLN I LS+N+L+G P IG L+NL + +S+N F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 295 GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS--LSNFTFSYNYF----QGLGNEC 348
GN+P S+ L L+ N G + + K +NF Y G+ EC
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 44/291 (15%)
Query: 87 NTTANWVDNTDVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPA---ELGLLTDLA 143
N +W N + C+++GV C DD V IDL+ + F A L LT L
Sbjct: 28 NLLPDWSSNKNPCTFDGVTCR---DDK----VTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80
Query: 144 LFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRV--VLSWPSLKFLDLRYN--NF 199
++++ G + F + D+S N L G + + S LKFL++ N +F
Sbjct: 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 200 EGELPCDLFDMKLDALFLNNNRFS------YSIPEKLGR--------------------S 233
G++ L L+ L L+ N S + + + G
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 234 TVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLF 293
+ + + NNF+ IP +G+ L + +S NKLSG F I + L++ ++SSN F
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 294 HGNVPQSFSSLESIQTLILSHNQLTGFVSEQIC-KLPSLSNFTFSYNYFQG 343
G +P L+S+Q L L+ N+ TG + + + +L+ S N+F G
Sbjct: 260 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPD-FSDWKLMFEFDVSNNRLVGSF 179
+D++ N ++G P E+G + L + ++ N G IPD D + + D+S+N+L G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 180 PRVVLSWPSLKFLDLRYNNFEGELP-CDLFDMKLDALFLNN 219
P+ + + L +DL NN G +P F+ A FLNN
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 129/301 (42%), Gaps = 56/301 (18%)
Query: 97 DVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGII 156
DV S N P L D + + +D++GN ++G F + T+L L +++SN+F G I
Sbjct: 203 DVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 157 PDFSDWKLMF------------------------EFDVSNNRLVGSFP------------ 180
P L + D+S N G+ P
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 181 -------------RVVLSWPSLKFLDLRYNNFEGELPCDLFDMK--LDALFLNNNRFSYS 225
+L LK LDL +N F GELP L ++ L L L++N FS
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 226 IPEKL---GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKN 282
I L ++T+ + +N F G IP ++ N L + LS N LSG PS +GSL
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 283 LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQ 342
LR + N+ G +PQ +++++TLIL N LTG + + +L+ + S N
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 343 G 343
G
Sbjct: 501 G 501
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 9/229 (3%)
Query: 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFP 180
+ ++GN I+G ++ +L V+SN F IP D + D+S N+L G F
Sbjct: 180 LAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 237
Query: 181 RVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRS--TVSVV 238
R + + LK L++ N F G +P L L L L N+F+ IP+ L + T++ +
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 239 TFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSE-IGSLKNLRVFDVSSNLFHGNV 297
+ N+F G +P G+ L + LS N SG P + + ++ L+V D+S N F G +
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 298 PQSFSSLE-SIQTLILSHNQLTGFVSEQICKLP--SLSNFTFSYNYFQG 343
P+S ++L S+ TL LS N +G + +C+ P +L N F G
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 55/262 (20%)
Query: 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFE----FDV 170
+ + + L+ ND+ G P+ L T+L +++NR G IP W E +
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKL 518
Query: 171 SNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYSI-- 226
SNN G+ P + SL +LDL N F G +P +F K+ A F+ R+ Y
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 227 -------------------PEKLGR-------------------------STVSVVTFAH 242
E+L R ++ + ++
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 243 NNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFS 302
N +G IP+ IG+M L + L N +SG P E+G L+ L + D+SSN G +PQ+ S
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 303 SLESIQTLILSHNQLTGFVSEQ 324
+L + + LS+N L+G + E
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEM 720
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 12/240 (5%)
Query: 121 IDLNGNDIAGSFPAEL-GLLTDLALFHVNSNRFCG-IIPDFSD--WKLMFEFDVSNNRLV 176
+DL+ N+ +G P L L L ++SN F G I+P+ + E + NN
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 177 GSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-ST 234
G P + + L L L +N G +P L + KL L L N IP++L T
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 235 VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFH 294
+ + N+ G IP + N NLN I LS+N+L+G P IG L+NL + +S+N F
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 295 GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS--LSNFTFSYNYF----QGLGNEC 348
GN+P S+ L L+ N G + + K +NF Y G+ EC
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 46/317 (14%)
Query: 61 TFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPALDDPNITVVAG 120
++ L + L +FK + N +W N + C+++GV C DD V
Sbjct: 1 AMGSQSLYREIHQLISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCR---DDK----VTS 51
Query: 121 IDLNGNDIAGSFPA---ELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVG 177
IDL+ + F A L LT L ++++ G + F + D+S N L G
Sbjct: 52 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 111
Query: 178 SFPRV--VLSWPSLKFLDLRYN--NFEGELPCDLFDMKLDALFLNNNRFS------YSIP 227
+ + S LKFL++ N +F G++ L L+ L L+ N S + +
Sbjct: 112 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 171
Query: 228 EKLGR--------------------STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDN 267
+ G + + + NNF+ IP +G+ L + +S N
Sbjct: 172 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 268 KLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQIC- 326
KLSG F I + L++ ++SSN F G +P L+S+Q L L+ N+ TG + + +
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 327 KLPSLSNFTFSYNYFQG 343
+L+ S N+F G
Sbjct: 289 ACDTLTGLDLSGNHFYG 305
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPD-FSDWKLMFEFDVSNNRLVGSF 179
+D++ N ++G P E+G + L + ++ N G IPD D + + D+S+N+L G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 180 PRVVLSWPSLKFLDLRYNNFEGELP-CDLFDMKLDALFLNN 219
P+ + + L +DL NN G +P F+ A FLNN
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 38/283 (13%)
Query: 73 ALQAFKKSIYSDPFNTTANWVDNTDVC--SYNGVFCAPALDDPNITVVAGIDLNG----- 125
AL KK + +P T ++W+ TD C ++ GV C D V +DL+G
Sbjct: 10 ALLQIKKDL-GNP-TTLSSWLPTTDCCNRTWLGVLCD---TDTQTYRVNNLDLSGLNLPK 64
Query: 126 ----------------------NDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDF-SDW 162
N++ G P + LT L ++ G IPDF S
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 163 KLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDL--FDMKLDALFLNNN 220
K + D S N L G+ P + S P+L + N G +P F ++ ++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 221 RFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSL 280
R + IP ++ V + N G G+ +N +I L+ N L+ ++G
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 281 KNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
KNL D+ +N +G +PQ + L+ + +L +S N L G + +
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 224 YSIPEKLGRSTVSVVTFAH----NNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGS 279
Y IP L + + + F + NN G IP +I + L+ + ++ +SG P +
Sbjct: 66 YPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 280 LKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSL-SNFTFSY 338
+K L D S N G +P S SSL ++ + N+++G + + L ++ T S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 339 NYFQGLGNECIPGS--KVNSAFDDASNCLAE 367
N G IP + +N AF D S + E
Sbjct: 184 NRLTGK----IPPTFANLNLAFVDLSRNMLE 210
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 120 GIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVS 171
G+DL N I G+ P L L L +V+ N CG IP + + FDVS
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ---RFDVS 296
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 226 IPEKLGRSTVSVVTFAHNNFNGCIPR-SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLR 284
+P+ L S +++ +HNN + + + NL+ ++LS N L+ + NLR
Sbjct: 33 VPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 285 VFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
D+SSN H FS L++++ L+L +N + + L S N
Sbjct: 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 345 GNECIP-GSKVNS--AFDDASNCLAERP---SQK---WANTCEPVVSNPVDC 387
E I G+K+ D +SN L + P QK W + +NP++C
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 215 LFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274
L+L+ N+F+ E ++++ ++N + +S NM L +ILS N+L P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 275 SEIGSLKNLRVFDVSSNLFHGN----VPQ-SFSSLESIQTLILSHNQL 317
LK+LR+ HGN VP+ +F+ L ++ L + N L
Sbjct: 96 RTFDGLKSLRLLS-----LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 249 IPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQ 308
+P+ I +++ E+ L N+ + P E+ + K+L + D+S+N QSFS++ +
Sbjct: 25 LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 309 TLILSHNQL 317
TLILS+N+L
Sbjct: 82 TLILSYNRL 90
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 53/251 (21%)
Query: 118 VAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGI--IPDFSDWKLMFEFDVSNNRL 175
VA IDL N IA L L + N I IP D L S N+L
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL------SGNKL 393
Query: 176 VGSFPRV----------------------VLSWPSLKFLDLRYNNFEG----ELPCDLFD 209
V + P++ +L P L+ L L N F + P + +
Sbjct: 394 V-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--N 450
Query: 210 MKLDALFLNNNRFSYSIPEKL------GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEII 263
L+ LFL N + +L G S + V+ HN N P ++ L +
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
L+ N+L+ +++ + NL + D+S N P F SL L ++HN+ F+ E
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLS---VLDITHNK---FICE 562
Query: 324 QICKLPSLSNF 334
C+L + N+
Sbjct: 563 --CELSTFINW 571
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 235 VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFH 294
+ V+ A+N N + + NL + LS N L + S L + D+ N
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 295 GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKV 354
Q+F LE +QTL L N LT I +PS+ + S GN+ + K+
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLS-------GNKLVTLPKI 399
Query: 355 N 355
N
Sbjct: 400 N 400
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 279 SLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSY 338
+LK+L+V +++ N + ++F L+++Q L LS+N L S LP ++
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 339 NYFQGLGNECIPGSKVNSAFDDASNCLA 366
N+ + ++ + D N L
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%)
Query: 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311
++ + NL +IL+ N+L L NL+ + N F L ++ L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 312 LSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
L+HNQL KL +L+ SYN Q L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 251 RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTL 310
+ I + N+ + L NKL S + L NL ++ N F L +++ L
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 311 ILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
+L NQL KL +L+ ++N Q L
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 189 LKFLDLRYNNFEGELPCDLFD--MKLDALFLNNNRFSYSIPEKL--GRSTVSVVTFAHNN 244
L +L L N + LP +FD L L L N+ S+P+ + + ++ + AHN
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144
Query: 245 FNGCIPRSIGNMQNLNEIILSDNKLS----GCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300
+ NL E+ LS N+L G F ++ LK+LR++ N
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF-DKLTQLKDLRLY---QNQLKSVPDGV 200
Query: 301 FSSLESIQTLILSHN 315
F L S+Q + L N
Sbjct: 201 FDRLTSLQYIWLHDN 215
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 215 LFLNNNRFSYSIPEK-LGRSTVSVVTFAHNNFNGCIPRSI-GNMQNLNEIILSDNKLSGC 272
L L +N+ S S+P K R T + + ++N +P I ++NL + ++DNKL
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLS 332
L NL + N P+ F SL + L L +N+L KL SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 333 NFTFSYNYFQ 342
N +
Sbjct: 161 ELRLYNNQLK 170
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 38/107 (35%)
Query: 238 VTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV 297
+ N + ++ + L + L+DNKL LKNL V+ N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 298 PQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
F L ++ L L NQL L L+ + YN Q L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRF----CGIIPDFSDWKLMFEFDVSNNRL- 175
+DL N ++ LT L L ++N N+ GI + + + ++ V++N+L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTDNKLQ 98
Query: 176 ---VGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR 232
+G F ++V +L L L N + LP +FD
Sbjct: 99 ALPIGVFDQLV----NLAELRLDRNQLKS-LPPRVFD---------------------SL 132
Query: 233 STVSVVTFAHNNFNGCIPRSI-GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSN 291
+ ++ ++ +N +P+ + + +L E+ L +N+L L L+ + +N
Sbjct: 133 TKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 292 LFHGNVPQSFSSLESIQTLILSHN 315
+F SLE ++ L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 215 LFLNNNRFSY----SIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLS 270
L LNNN F+ I +KL + + + F++N + +NEI+L+ N+L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQ--LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 271 GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330
L++L+ + SN SF L S++ L L NQ+T L S
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 331 LSNFTFSYNYF 341
LS N F
Sbjct: 155 LSTLNLLANPF 165
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 257 QNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQ 316
+ + EI L N + P K LR D+S+N P +F L S+ +L+L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 317 LT 318
+T
Sbjct: 92 IT 93
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 155 IIP--DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKL 212
+IP FS +K + D+SNN++ P SL L L Y N ELP LF+
Sbjct: 46 VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL-YGNKITELPKSLFE--- 101
Query: 213 DALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC 272
G ++ ++ N N + ++ NLN + L DNKL
Sbjct: 102 ------------------GLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTI 143
Query: 273 FPSEIGSLKNLRVFDVSSNLF 293
L+ ++ ++ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 257 QNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQ 316
+ + EI L N + P K LR D+S+N P +F L S+ +L+L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 317 LT 318
+T
Sbjct: 92 IT 93
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 155 IIP--DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKL 212
+IP FS +K + D+SNN++ P SL L L Y N ELP LF+
Sbjct: 46 VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL-YGNKITELPKSLFE--- 101
Query: 213 DALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC 272
G ++ ++ N N + ++ NLN + L DNKL
Sbjct: 102 ------------------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
Query: 273 FPSEIGSLKNLRVFDVSSNLF 293
L+ ++ ++ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 231 GRSTVSVVTFAHNNFN-GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVS 289
G S++ V+ A N+F +P ++NL + LS +L P+ SL +L+V ++S
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 290 SNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330
N F + L S+Q L S N + +++ PS
Sbjct: 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 188 SLKFLDLRYN-------NFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTF 240
SLK+LDL +N NF G + D + L +S+ L ++
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISH 454
Query: 241 AHNN--FNGCIPRSIGNMQNLNEIILSDNKLSGCF-PSEIGSLKNLRVFDVSSNLFHGNV 297
H FNG + +L + ++ N F P L+NL D+S
Sbjct: 455 THTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 298 PQSFSSLESIQTLILSHN 315
P +F+SL S+Q L +SHN
Sbjct: 511 PTAFNSLSSLQVLNMSHN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 231 GRSTVSVVTFAHNNFN-GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVS 289
G S++ V+ A N+F +P ++NL + LS +L P+ SL +L+V ++S
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 290 SNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330
N F + L S+Q L S N + +++ PS
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 188 SLKFLDLRYN-------NFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTF 240
SLK+LDL +N NF G + D + L +S+ L ++
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISH 430
Query: 241 AHNN--FNGCIPRSIGNMQNLNEIILSDNKLSGCF-PSEIGSLKNLRVFDVSSNLFHGNV 297
H FNG + +L + ++ N F P L+NL D+S
Sbjct: 431 THTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 298 PQSFSSLESIQTLILSHN 315
P +F+SL S+Q L +SHN
Sbjct: 487 PTAFNSLSSLQVLNMSHN 504
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 231 GRSTVSVVTFAHNNFN-GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVS 289
G S++ V+ A N+F +P ++NL + LS +L P+ SL +L+V ++S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 290 SNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330
N F + L S+Q L S N + +++ PS
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 188 SLKFLDLRYN-------NFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTF 240
SLK+LDL +N NF G + D + L +S+ L ++
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISH 135
Query: 241 AHNN--FNGCIPRSIGNMQNLNEIILSDNKLSGCF-PSEIGSLKNLRVFDVSSNLFHGNV 297
H FNG + +L + ++ N F P L+NL D+S
Sbjct: 136 THTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 298 PQSFSSLESIQTLILSHN 315
P +F+SL S+Q L +SHN
Sbjct: 192 PTAFNSLSSLQVLNMSHN 209
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 23/177 (12%)
Query: 188 SLKFLDLRYNNFEGELPCDLFD----MKLDALFLNNNRFSYSIPEKLGR----------- 232
S+ LDL N F+ + FD K+ +L L+N SY++ G
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSFGHTNFKDPDNFTF 269
Query: 233 -----STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFD 287
S V + + + + +L ++ L+ N+++ + L +L +
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 288 VSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
+S N + F +L+ ++ L LS+N + + LP+L N + +
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Query: 201 GELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLN 260
G CDL K+ AL + FS+ + + +T A N N + + +L
Sbjct: 276 GVKTCDLSKSKIFALL--KSVFSHF-------TDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 261 EIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGF 320
++ LS N L +L L V D+S N QSF L +++ L L NQL
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 321 VSEQICKLPSLSNFTFSYN 339
+L SL N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 254 GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313
G + + + LS+N+++ S++ NL+ ++SN + SFSSL S++ L LS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 314 HNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345
+N L+ S L SL+ N ++ LG
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 114
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 183 VLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNR------FSYSIPEKLGRSTV 235
+L++P L +DL YN E + M +L+ L+++NNR + IP T+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP------TL 303
Query: 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNL 283
V+ +HN+ + R+ L + L N + S +LKNL
Sbjct: 304 KVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 254 GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313
G + + + LS+N+++ S++ NL+ ++SN + SFSSL S++ L LS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 314 HNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345
+N L+ S L SL+ N ++ LG
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 26/155 (16%)
Query: 189 LKFLDLRYNNFEGELPCDLFD--MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFN 246
L +L+L YN + L +FD +L L L NN+ + S+P LG F H
Sbjct: 61 LTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLP--LG-------VFDH---- 105
Query: 247 GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLES 306
+ L+++ L N+L L L+ +++N +F L +
Sbjct: 106 ---------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 307 IQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYF 341
+QTL LS NQL +L L T N F
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 26/155 (16%)
Query: 189 LKFLDLRYNNFEGELPCDLFD--MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFN 246
L +L+L YN + L +FD +L L L NN+ + S+P LG F H
Sbjct: 61 LTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLP--LG-------VFDH---- 105
Query: 247 GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLES 306
+ L+++ L N+L L L+ +++N +F L +
Sbjct: 106 ---------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 307 IQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYF 341
+QTL LS NQL +L L T N F
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 57/265 (21%)
Query: 118 VAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVG 177
V +DL+GN ++ A+L T L L +++SN + D + D++NN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN---- 90
Query: 178 SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLG-RSTVS 236
+ + +L PS++ L NN + C K + ++L NN+ + G RS V
Sbjct: 91 -YVQELLVGPSIETLHAANNNI-SRVSCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQ 147
Query: 237 VVTFAHNNFNGC----IPRSIGNMQNLN-----------EII--------LSDNKLSGC- 272
+ N + + S +++LN +++ LS NKL+
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207
Query: 273 --FPSEIG----SLK---------------NLRVFDVSSNLFH-GNVPQSFSSLESIQTL 310
F S G SL+ NL FD+ N FH G + FS + +QT+
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 311 I-LSHNQLTGFVSEQICKLPSLSNF 334
+ +LTG +E+ C +P+L ++
Sbjct: 268 AKQTVKKLTG-QNEEECTVPTLGHY 291
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 168 FDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYS 225
D+S+N+L S P + + P+L LD+ +N LP +L L+L N +
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-T 138
Query: 226 IPEKLGRST--VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269
+P L T + ++ A+NN + ++NL+ ++L +N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 168 FDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYS 225
D+S+N+L S P + + P+L LD+ +N LP +L L+L N +
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-T 138
Query: 226 IPEKLGRST--VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269
+P L T + ++ A+NN + ++NL+ ++L +N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 183 VLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNR------FSYSIPEKLGRSTV 235
+L++P L +DL YN E + M +L+ L+++NNR + IP T+
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP------TL 297
Query: 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNL 283
V+ +HN+ + R+ L + L N + S +LKNL
Sbjct: 298 KVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 168 FDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYS 225
D+S+N+L S P + + P+L LD+ +N LP +L L+L N +
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-T 138
Query: 226 IPEKLGRST--VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269
+P L T + ++ A+NN + ++NL+ ++L +N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 168 FDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYS 225
D+S+N+L S P + + P+L LD+ +N LP +L L+L N +
Sbjct: 83 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-T 139
Query: 226 IPEKLGRST--VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269
+P L T + ++ A+NN + ++NL+ ++L +N L
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 168 FDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYS 225
D+S+N+L S P + + P+L LD+ +N LP +L L+L N +
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-T 138
Query: 226 IPEKLGRST--VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269
+P L T + ++ A+NN + ++NL+ ++L +N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 14/58 (24%)
Query: 280 LKNLRVFDVSSNLF----------HGN----VPQSFSSLESIQTLILSHNQLTGFVSE 323
L NL++F++S+N+F +GN +P +L +++ L LSHN+LT +E
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 259 LNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSN 291
L + L+ N L+ P+EI +L NLRV D+S N
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHN 280
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 36/93 (38%)
Query: 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311
++ + NL +IL+ N+L L NL+ + N F L ++ L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 312 LSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
L HNQL KL +L+ N Q L
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 251 RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTL 310
+ I + N+ + L NKL S + L NL ++ N F L +++ L
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 311 ILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
+L NQL KL +L+ +N Q L
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSL 148
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 192 LDLRYNNFEGELPCDL--FDMKLDALFLNNNRFSYSIPEKLGRSTVSV---VTFAHNNFN 246
L L YN E E+P D F +++ L ++N+ Y IP +V V V F++N
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVXGSVDFSYNKI- 656
Query: 247 GCIPRSIG------NMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300
G R+I N + + LS N++ FP+E+ + + + SN ++P++
Sbjct: 657 GSEGRNISCSXDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLXTSIPEN 715
Query: 301 --------FSSLESIQTLILSHNQLTGFVSE-QICKLPSLSNFTFSYNYFQGLGNECIPG 351
+ + + T+ L N+LT + + LP LSN SYN F + +
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPTQPLNS 775
Query: 352 SKVNS 356
S++ +
Sbjct: 776 SQLKA 780
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 57/265 (21%)
Query: 118 VAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVG 177
V +DL+GN ++ A+L T L L +++SN + D + D++NN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN---- 90
Query: 178 SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLG-RSTVS 236
+ + +L PS++ L NN + C K + ++L NN+ + G RS V
Sbjct: 91 -YVQELLVGPSIETLHAANNNI-SRVSCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQ 147
Query: 237 VVTFAHNNFNGC----IPRSIGNMQNLN-----------EII--------LSDNKLSGC- 272
+ N + + S +++LN +++ LS NKL+
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207
Query: 273 --FPSEIG----SLK---------------NLRVFDVSSNLFH-GNVPQSFSSLESIQTL 310
F S G SL+ NL FD+ N FH G + FS + +QT+
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 311 I-LSHNQLTGFVSEQICKLPSLSNF 334
+ +LTG +E+ C +P+L ++
Sbjct: 268 AKQTVKKLTG-QNEEECTVPTLGHY 291
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 188 SLKFLDLRYNNFEGELP-CDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFN 246
SL+ LDL N + P C KL AL LNN + + + EKL
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL---------------- 215
Query: 247 GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLK--NLRVFDVSSNLFHGNVPQSFSSL 304
C S ++QNL+ L++N+L S LK NL D+S N H SFS L
Sbjct: 216 -CWELSNTSIQNLS---LANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYL 271
Query: 305 ESIQTLILSHNQL 317
S++ L L +N +
Sbjct: 272 PSLRYLSLEYNNI 284
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 253 IGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL 312
+ + L EI L +L+ P L LRV +VS N F S+ +++TLIL
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
Query: 313 SHNQLT 318
N L
Sbjct: 328 DSNPLA 333
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 256 MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHN 315
+ NL ++ +S+NK+ L NL+ +V N ++FS L S++ L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 316 QLTGFVSEQICKLPSL 331
LT +E + L L
Sbjct: 163 NLTSIPTEALSHLHGL 178
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGS--LKNLRVFDVSS 290
S+ + + F N F + + ++ L +IL N L F + + + +L DVS
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 291 NLFHGNV-PQSFSSLESIQTLILSHNQLTGFV 321
N + + ++ + ESI L LS N LTG V
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
LS N +S +I L LRV +S N F + ++ L +SHN+L
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--- 115
Query: 324 QICKLPSLSNFTFSYNYFQGL 344
C + SL + S+N F L
Sbjct: 116 SCCPMASLRHLDLSFNDFDVL 136
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
LS NK++ ++ + NL+V + S+ + +F SL S++ L LS N L+ S
Sbjct: 59 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 118
Query: 324 QICKLPSLSNFTFSYNYFQGLG 345
L SL N +Q LG
Sbjct: 119 WFGPLSSLKYLNLMGNPYQTLG 140
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 280 LKNLRVFDVSSNLFHGNVPQSFS---SLESIQTLILSHNQLTGF--VSEQICKLPSLSNF 334
LK+L D+S NL ++ + + S+QTL+LS N L E + L +L++
Sbjct: 359 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 418
Query: 335 TFSYNYFQGLGNEC 348
S N F + + C
Sbjct: 419 DISRNTFHPMPDSC 432
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
LS NK++ ++ + NL+V + S+ + +F SL S++ L LS N L+ S
Sbjct: 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92
Query: 324 QICKLPSLSNFTFSYNYFQGLG 345
L SL N +Q LG
Sbjct: 93 WFGPLSSLKYLNLMGNPYQTLG 114
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 280 LKNLRVFDVSSNLFHGNVPQSFS---SLESIQTLILSHNQLTGF--VSEQICKLPSLSNF 334
LK+L D+S NL ++ + + S+QTL+LS N L E + L +L++
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392
Query: 335 TFSYNYFQGLGNEC 348
S N F + + C
Sbjct: 393 DISRNTFHPMPDSC 406
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323
+S N +S + S+I SL LR+ +S N F + ++ L LSHN+L
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH 87
Query: 324 QICKLPSLSNFTFSYNYFQGL 344
L L S+N F L
Sbjct: 88 PTVNLKHLD---LSFNAFDAL 105
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGF--VSEQICKLPSL 331
PS+I +L D S+NL V ++ L ++TLIL NQL ++E ++ SL
Sbjct: 320 PSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 332 SNFTFSYN 339
S N
Sbjct: 377 QQLDISQN 384
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 187 PSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNN 244
PSL L+L ++N +P F+ KL L+L NN SIP ++A N
Sbjct: 83 PSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIP-----------SYAFNR 129
Query: 245 FNGCIPRSIGNMQNLNEII---------LSDNKLSGCFPSEI---GSLKNLRVFDVSSNL 292
+G ++ L I L L C +I +L L ++S N
Sbjct: 130 VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR 189
Query: 293 FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
P SF L S++ L L H Q+ L SL S+N L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 188 SLKFLDLRYN-------NFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTF 240
SLK+LDL +N NF G + D + L +S+ L ++
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISH 430
Query: 241 AHNN--FNGCIPRSIGNMQNLNEIILSDNKLSGCF-PSEIGSLKNLRVFDVSSNLFHGNV 297
H FNG + +L + ++ N F P L+NL D+S
Sbjct: 431 THTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 298 PQSFSSLESIQTLILSHNQL 317
P +F+SL S+Q L ++ NQL
Sbjct: 487 PTAFNSLSSLQVLNMASNQL 506
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 187 PSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNN 244
PSL L+L ++N +P F+ KL L+L NN SIP ++A N
Sbjct: 83 PSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIP-----------SYAFNR 129
Query: 245 FNGCIPRSIGNMQNLNEII---------LSDNKLSGCFPSEI---GSLKNLRVFDVSSNL 292
+G ++ L I L L C +I +L L ++S N
Sbjct: 130 VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR 189
Query: 293 FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
P SF L S++ L L H Q+ L SL S+N L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 154 GIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELP--------- 204
G +F+ W+ +S ++ G +++S K +Y F+G L
Sbjct: 314 GASDNFTRWRYKVSVTLSGKKVTG---HILVSLFGNKGNSKQYEIFKGTLKPDSTHSNEF 370
Query: 205 ---CDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSI 253
D+ D+++ NN + ++P ++G S + V T FN C P ++
Sbjct: 371 DSDVDVGDLQMVKFIWYNNVINPTLP-RVGASKIIVETNVGKQFNFCSPETV 421
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 27/121 (22%)
Query: 247 GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSN--------------- 291
GC+ + +GN+Q L ++ +D + S C ++ +L +L+ ++S N
Sbjct: 341 GCLEK-LGNLQTL-DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 292 ---------LFHGNVPQS-FSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYF 341
H N PQS F +L +Q L L++ L + LP L + N+F
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 342 Q 342
Q
Sbjct: 459 Q 459
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQL 317
L +NK++ + +LKNL + +N P +F+ L ++ L LS NQL
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|1YLO|A Chain A, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
pdb|1YLO|B Chain B, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
pdb|1YLO|C Chain C, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
pdb|1YLO|D Chain D, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
pdb|1YLO|E Chain E, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
pdb|1YLO|F Chain F, Crystal Structure Of Protein Of Unknown Function (Possible
Aminopeptidase) S2589 From Shigella Flexneri 2a Str.
2457t
Length = 348
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 155 IIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSL 189
I+ D + W F++ +N+R +G+ P +VLS SL
Sbjct: 221 IVLDTACWAKNFDYGAANHRQIGNGPXLVLSDKSL 255
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNL 292
+TV + H + IP N + L DN+++ P SL NL+ + SN
Sbjct: 22 TTVDCRSKRHASVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75
Query: 293 FHGNVPQS-FSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344
G +P F SL + L L NQLT S +L L N L
Sbjct: 76 L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 264 LSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQL 317
L +NK++ + +LKNL + +N P +F+ L ++ L LS NQL
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,380,173
Number of Sequences: 62578
Number of extensions: 501969
Number of successful extensions: 1329
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 200
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)