Query 035831
Match_columns 443
No_of_seqs 771 out of 4506
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.3E-35 1.4E-39 321.0 24.4 292 69-367 29-346 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-33 2.2E-38 311.4 17.6 259 112-370 160-421 (968)
3 KOG4194 Membrane glycoprotein 100.0 2E-34 4.4E-39 276.6 3.4 349 24-390 92-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.1E-32 1.1E-36 260.2 3.6 309 20-366 135-452 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.3E-30 1.2E-34 248.0 -1.8 316 27-365 25-374 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 9.2E-30 2E-34 235.0 -2.5 249 114-370 204-544 (565)
7 KOG0444 Cytoskeletal regulator 99.9 2.4E-28 5.2E-33 236.6 -0.5 299 29-347 73-380 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 4.5E-28 9.7E-33 223.9 -8.7 338 27-372 84-524 (565)
9 KOG4237 Extracellular matrix p 99.9 4.9E-24 1.1E-28 197.0 -0.1 268 98-369 52-362 (498)
10 KOG0618 Serine/threonine phosp 99.9 2.3E-24 4.9E-29 217.8 -4.6 219 140-364 241-487 (1081)
11 KOG0618 Serine/threonine phosp 99.8 5.3E-23 1.1E-27 208.0 -1.8 242 118-372 158-426 (1081)
12 PLN03210 Resistant to P. syrin 99.8 1.3E-19 2.9E-24 201.0 21.9 238 115-363 633-903 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.3E-25 194.4 12.9 260 37-373 204-465 (788)
14 KOG4237 Extracellular matrix p 99.8 8.2E-23 1.8E-27 189.0 -4.3 268 120-391 50-364 (498)
15 PRK15370 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 192.1 12.0 227 117-370 179-405 (754)
16 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.5E-24 189.6 13.0 228 116-367 199-429 (754)
17 PRK15387 E3 ubiquitin-protein 99.8 2.9E-19 6.3E-24 185.7 12.3 242 34-349 222-465 (788)
18 PLN03210 Resistant to P. syrin 99.8 1.1E-17 2.5E-22 185.6 20.2 248 114-370 609-887 (1153)
19 KOG0617 Ras suppressor protein 99.7 1.5E-20 3.2E-25 155.5 -6.0 181 114-344 31-214 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-19 2.8E-24 174.6 -0.7 249 116-364 23-318 (319)
21 KOG0617 Ras suppressor protein 99.7 4.9E-20 1.1E-24 152.4 -3.8 162 136-347 29-191 (264)
22 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-19 3.2E-24 174.2 -1.2 251 120-370 2-295 (319)
23 PLN03150 hypothetical protein; 99.5 2.1E-13 4.6E-18 142.0 13.8 150 67-222 370-527 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 2.6E-15 5.7E-20 145.5 -3.4 174 139-319 74-248 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 2.5E-15 5.5E-20 145.6 -3.9 194 145-346 55-251 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.3E-13 2.9E-18 136.8 7.1 196 120-323 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.4 3.7E-13 8.1E-18 133.6 8.3 198 144-349 97-297 (394)
28 KOG1259 Nischarin, modulator o 99.3 2.8E-13 6E-18 122.1 2.0 134 233-372 284-418 (490)
29 KOG3207 Beta-tubulin folding c 99.3 3.8E-13 8.2E-18 126.9 -0.5 207 137-344 118-341 (505)
30 KOG1909 Ran GTPase-activating 99.3 2E-13 4.3E-18 125.5 -2.4 230 116-365 30-310 (382)
31 KOG1259 Nischarin, modulator o 99.3 5.8E-13 1.3E-17 120.0 -0.2 208 131-346 205-416 (490)
32 KOG0531 Protein phosphatase 1, 99.2 1.9E-12 4.1E-17 129.1 -0.6 241 116-367 72-319 (414)
33 PLN03150 hypothetical protein; 99.2 4.8E-11 1E-15 124.5 9.4 107 259-365 420-527 (623)
34 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.7E-16 106.6 3.0 121 234-359 20-146 (175)
35 KOG0531 Protein phosphatase 1, 99.1 2.8E-12 6.1E-17 127.8 -2.3 239 117-367 50-291 (414)
36 KOG3207 Beta-tubulin folding c 99.1 9.2E-12 2E-16 117.7 -0.2 211 159-370 117-343 (505)
37 PF14580 LRR_9: Leucine-rich r 99.1 6.3E-11 1.4E-15 102.2 4.3 114 253-370 15-130 (175)
38 KOG1859 Leucine-rich repeat pr 99.0 7.1E-12 1.5E-16 125.0 -7.3 134 233-373 164-299 (1096)
39 PF13855 LRR_8: Leucine rich r 98.9 8.3E-10 1.8E-14 78.4 3.9 59 282-340 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.7E-14 77.5 3.6 61 305-365 1-61 (61)
41 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3E-15 107.0 -2.0 224 134-367 24-284 (382)
42 KOG4658 Apoptotic ATPase [Sign 98.7 5.1E-09 1.1E-13 112.1 3.5 107 114-221 543-653 (889)
43 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-08 2.4E-13 91.5 0.7 234 116-368 30-318 (388)
44 KOG4658 Apoptotic ATPase [Sign 98.6 7.4E-08 1.6E-12 103.2 6.7 149 114-265 521-676 (889)
45 KOG1859 Leucine-rich repeat pr 98.5 1.6E-09 3.4E-14 108.6 -7.2 127 210-343 164-293 (1096)
46 KOG4579 Leucine-rich repeat (L 98.3 3.2E-08 6.9E-13 79.7 -3.2 83 235-319 55-137 (177)
47 KOG4579 Leucine-rich repeat (L 98.3 8.5E-08 1.8E-12 77.3 -1.5 90 116-208 53-143 (177)
48 KOG2120 SCF ubiquitin ligase, 98.3 9.8E-09 2.1E-13 93.0 -8.0 173 165-339 187-373 (419)
49 KOG2982 Uncharacterized conser 98.3 1.7E-07 3.6E-12 85.2 -0.3 201 116-335 71-285 (418)
50 KOG2982 Uncharacterized conser 98.2 1.2E-07 2.5E-12 86.2 -1.8 204 162-367 70-291 (418)
51 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-08 3.8E-13 91.4 -7.5 191 141-333 186-391 (419)
52 COG5238 RNA1 Ran GTPase-activa 98.0 8.5E-07 1.8E-11 79.7 -0.9 222 135-367 25-286 (388)
53 PF12799 LRR_4: Leucine Rich r 98.0 6.6E-06 1.4E-10 53.6 3.1 36 164-200 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.1E-10 52.8 3.5 17 325-341 20-36 (44)
55 KOG1644 U2-associated snRNP A' 97.9 1.6E-05 3.4E-10 68.7 5.3 104 257-362 42-149 (233)
56 PF08263 LRRNT_2: Leucine rich 97.9 1.6E-05 3.6E-10 51.6 4.1 40 68-107 2-43 (43)
57 PRK15386 type III secretion pr 97.8 6.2E-05 1.4E-09 73.2 7.4 136 159-316 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.5E-10 66.3 5.2 108 259-370 21-130 (233)
59 PRK15386 type III secretion pr 97.7 0.00013 2.7E-09 71.1 8.2 138 134-292 46-188 (426)
60 PF13306 LRR_5: Leucine rich r 97.3 0.00085 1.9E-08 55.0 6.9 117 251-373 6-122 (129)
61 PF13306 LRR_5: Leucine rich r 97.3 0.0011 2.4E-08 54.3 7.5 82 112-196 8-90 (129)
62 KOG3665 ZYG-1-like serine/thre 97.3 0.0002 4.3E-09 75.4 3.4 132 211-344 123-265 (699)
63 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.6E-09 75.9 2.4 147 187-335 122-281 (699)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00032 7E-09 63.2 1.4 98 234-335 44-149 (260)
65 KOG2739 Leucine-rich acidic nu 97.0 0.0004 8.7E-09 62.6 2.0 80 117-200 44-129 (260)
66 KOG1924 RhoA GTPase effector D 96.8 0.0023 5E-08 65.4 6.3 15 24-38 82-96 (1102)
67 KOG2123 Uncharacterized conser 96.7 0.00012 2.7E-09 66.3 -3.3 80 236-319 22-102 (388)
68 KOG2123 Uncharacterized conser 96.6 8.1E-05 1.7E-09 67.5 -4.9 100 256-359 18-123 (388)
69 KOG4308 LRR-containing protein 95.7 7.5E-05 1.6E-09 75.1 -11.3 182 163-344 87-305 (478)
70 KOG4308 LRR-containing protein 95.5 5.3E-05 1.1E-09 76.2 -13.0 201 141-341 88-330 (478)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.0095 2.1E-07 32.3 0.6 12 165-176 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.9E-07 31.7 0.9 9 285-293 4-12 (22)
73 KOG0473 Leucine-rich repeat pr 94.6 0.00079 1.7E-08 59.6 -6.7 85 114-200 40-124 (326)
74 KOG4341 F-box protein containi 93.4 0.0015 3.2E-08 62.7 -7.9 83 116-198 138-227 (483)
75 KOG0473 Leucine-rich repeat pr 93.1 0.0017 3.7E-08 57.6 -7.3 90 132-223 34-124 (326)
76 PF13504 LRR_7: Leucine rich r 92.3 0.089 1.9E-06 26.4 1.3 11 165-175 3-13 (17)
77 KOG1947 Leucine rich repeat pr 92.2 0.011 2.4E-07 60.0 -4.2 13 186-198 242-254 (482)
78 KOG1947 Leucine rich repeat pr 92.1 0.014 3E-07 59.3 -3.7 108 162-269 187-307 (482)
79 KOG4341 F-box protein containi 91.6 0.0087 1.9E-07 57.6 -5.2 249 113-363 161-436 (483)
80 smart00370 LRR Leucine-rich re 90.8 0.18 3.8E-06 28.4 1.7 18 187-205 2-19 (26)
81 smart00369 LRR_TYP Leucine-ric 90.8 0.18 3.8E-06 28.4 1.7 18 187-205 2-19 (26)
82 KOG3864 Uncharacterized conser 90.8 0.04 8.7E-07 48.1 -1.5 81 117-197 102-186 (221)
83 smart00369 LRR_TYP Leucine-ric 90.5 0.19 4.1E-06 28.2 1.6 13 331-343 4-16 (26)
84 smart00370 LRR Leucine-rich re 90.5 0.19 4.1E-06 28.2 1.6 13 331-343 4-16 (26)
85 KOG3864 Uncharacterized conser 86.5 0.089 1.9E-06 46.0 -2.3 81 258-338 102-185 (221)
86 PF13516 LRR_6: Leucine Rich r 83.3 0.29 6.3E-06 26.9 -0.4 13 306-318 3-15 (24)
87 smart00365 LRR_SD22 Leucine-ri 79.4 1.6 3.4E-05 24.6 1.7 13 164-176 3-15 (26)
88 TIGR00864 PCC polycystin catio 76.9 1.4 3E-05 52.8 2.0 33 311-343 1-33 (2740)
89 PRK15319 AIDA autotransporter- 75.3 4.8 0.0001 46.5 5.4 6 355-360 1623-1628(2039)
90 KOG3671 Actin regulatory prote 73.8 7.7 0.00017 38.6 5.8 27 103-129 64-90 (569)
91 KOG4242 Predicted myosin-I-bin 73.5 10 0.00022 37.8 6.5 224 118-342 216-481 (553)
92 smart00364 LRR_BAC Leucine-ric 73.2 2.5 5.4E-05 23.8 1.4 17 354-370 3-19 (26)
93 smart00368 LRR_RI Leucine rich 66.2 5 0.00011 22.9 1.7 14 163-176 2-15 (28)
94 KOG3763 mRNA export factor TAP 65.5 3.2 7E-05 42.0 1.4 64 279-344 216-285 (585)
95 PRK09752 adhesin; Provisional 62.3 8.2 0.00018 42.8 3.8 11 92-102 497-507 (1250)
96 KOG3671 Actin regulatory prote 62.1 20 0.00042 35.8 5.9 10 142-151 79-88 (569)
97 KOG3763 mRNA export factor TAP 58.9 4.6 9.9E-05 40.9 1.1 11 163-173 244-254 (585)
98 PRK13042 superantigen-like pro 58.0 21 0.00046 33.0 5.1 23 417-439 68-90 (291)
99 KOG4242 Predicted myosin-I-bin 45.1 18 0.0004 36.1 2.8 197 162-361 164-388 (553)
100 TIGR00864 PCC polycystin catio 40.1 20 0.00042 43.8 2.5 33 287-319 1-33 (2740)
101 smart00367 LRR_CC Leucine-rich 30.4 36 0.00078 18.7 1.4 11 163-173 2-12 (26)
102 KOG1925 Rac1 GTPase effector F 26.5 78 0.0017 31.8 3.7 41 403-443 224-264 (817)
103 KOG0162 Myosin class I heavy c 22.6 4E+02 0.0087 28.6 8.0 83 361-443 942-1045(1106)
104 PRK14948 DNA polymerase III su 21.8 1.7E+02 0.0036 31.1 5.4 50 394-443 518-567 (620)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-35 Score=321.01 Aligned_cols=292 Identities=32% Similarity=0.507 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEcc
Q 035831 69 KAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVN 148 (443)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 148 (443)
.+..+|.++|+.+ .++.....+|....++|.|.|++|... .+++.|||++|++.+.++..|..+++|++|+|+
T Consensus 29 ~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~c~w~gv~c~~~------~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 29 EELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNNS------SRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred HHHHHHHHHHHhC-CCCcccCCCCCCCCCCCcCcceecCCC------CcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence 3556789999887 577778899987789999999999742 356666666666666666666666666666666
Q ss_pred CCcCCccCC-C-ccCCCCCCEEEccCC----------------------cCcccCCcccCCCCCCcEEecccccCCCCCC
Q 035831 149 SNRFCGIIP-D-FSDWKLMFEFDVSNN----------------------RLVGSFPRVVLSWPSLKFLDLRYNNFEGELP 204 (443)
Q Consensus 149 ~n~i~~~~~-~-~~~l~~L~~L~Ls~n----------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 204 (443)
+|++.+..+ . +..+++|++|+|++| .+.+.+|..++.+++|++|+|++|.+.+.+|
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 666654333 2 334555555555555 4444555556666666666666666665566
Q ss_pred CcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCC
Q 035831 205 CDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKN 282 (443)
Q Consensus 205 ~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 282 (443)
..+... +|++|++++|.+.+.+|..++. .+|++|++++|++.+.+|..++++++|++|++++|.+++.+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 555554 6666666666666666655544 55666666666666666666666666666666666666666666666666
Q ss_pred ccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCC
Q 035831 283 LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDAS 362 (443)
Q Consensus 283 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~ 362 (443)
|++|++++|++.+.+|..+..+.+|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 66666666666666666666666677777777766666666666677777777777777666666666677777777777
Q ss_pred CCCCC
Q 035831 363 NCLAE 367 (443)
Q Consensus 363 N~l~~ 367 (443)
|.+.+
T Consensus 342 n~l~~ 346 (968)
T PLN00113 342 NKFSG 346 (968)
T ss_pred CCCcC
Confidence 77664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-33 Score=311.41 Aligned_cols=259 Identities=28% Similarity=0.436 Sum_probs=193.5
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLK 190 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 190 (443)
+.++++|++|+|++|.+.+.+|..|+++++|++|+|++|++.+..+ .+.++++|++|+|++|++.+.+|..+.++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 3455677777777777777777777777777777777777776665 677777777777777777777777777777777
Q ss_pred EEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcc
Q 035831 191 FLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNK 268 (443)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 268 (443)
+|++++|.+.+.+|..+... +|++|++++|.+.+.+|..+.. .+|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 77777777776777666665 7777777777777666666544 667777777777777777777777777777777777
Q ss_pred cCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCC
Q 035831 269 LSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNEC 348 (443)
Q Consensus 269 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 348 (443)
+.+..|..+..+++|+.|++++|.+.+.+|..++.+.+|+.|++++|++.+.+|..+..+.+|+.|++++|.+.+..|..
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 77777777777777777777777777777777777777888888888777777777777777888888888887777777
Q ss_pred CCCCCcCceeeCCCCCCCCCcc
Q 035831 349 IPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 349 ~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+..+++|+.|++++|.+++..+
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECC
Confidence 7788888888888888876433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=276.63 Aligned_cols=349 Identities=20% Similarity=0.236 Sum_probs=286.0
Q ss_pred ccChHHHHHHHHhhhcCCCCC--CCCCCCCCcccC-CCcccccchhHH----HHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 035831 24 ALSDAEAAFITRRQLLTLPKD--GKLPDNFDDEYG-LKNKTFANERLK----KAYVALQAFKKSIYSDPFNTTANWVDNT 96 (443)
Q Consensus 24 ~~~~~~~~~~~~l~~l~l~~~--~~~P~~~~~~~~-l~~l~~~~~~l~----~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 96 (443)
.++.+.|.++.+|+..++.+| +.+|. |++... ++.|++.+|.+. +...++.+++.. |-
T Consensus 92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl---DL----------- 156 (873)
T KOG4194|consen 92 HIDFEFFYNLPNLQEVNLNKNELTRIPR-FGHESGHLEKLDLRHNLISSVTSEELSALPALRSL---DL----------- 156 (873)
T ss_pred cCcHHHHhcCCcceeeeeccchhhhccc-ccccccceeEEeeeccccccccHHHHHhHhhhhhh---hh-----------
Confidence 445677888999999999999 88895 445544 999999999874 334444444432 11
Q ss_pred CCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcC
Q 035831 97 DVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRL 175 (443)
Q Consensus 97 ~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l 175 (443)
+-+-+.-.+...|+.-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+|+.++. .|.++++|+.|+|..|+|
T Consensus 157 ---SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 ---SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred ---hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 1122223333455555789999999999998888999999999999999999999999 999999999999999999
Q ss_pred cccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCcc-ccCCccceeeeccCCCCCccchhh
Q 035831 176 VGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEK-LGRSTVSVVTFAHNNFNGCIPRSI 253 (443)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l 253 (443)
.-..--.|.++++|+.|.|..|.|...-...++.+ ++++|+|+.|++...-..+ ++...|+.|++++|.|..+.+++.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 84446679999999999999999994444445555 9999999999998544443 366899999999999998889999
Q ss_pred hcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCc---hhhcCCCC
Q 035831 254 GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVS---EQICKLPS 330 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~ 330 (443)
...++|++|+|++|+|+...+..|..+..|++|+|++|+|+..-...|.++++|++|||++|.|+..+. ..|.++++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 999999999999999998888899999999999999999997777889999999999999999987653 46888999
Q ss_pred CCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccCC-CC--ccCCCCCCCC
Q 035831 331 LSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTCE-PV--VSNPVDCSRD 390 (443)
Q Consensus 331 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~-~~--~~np~~c~~~ 390 (443)
|+.|++.+|+|..+.-.+|.++..|+.|||.+|.|..+....|..... .+ ..--..|||.
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence 999999999999999999999999999999999999988777654321 11 2334567774
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-32 Score=260.21 Aligned_cols=309 Identities=17% Similarity=0.201 Sum_probs=271.5
Q ss_pred hhccccChHHHHHHHHhhhcCCCCC--CCCC-CCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 035831 20 SICLALSDAEAAFITRRQLLTLPKD--GKLP-DNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNT 96 (443)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~l~l~~~--~~~P-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 96 (443)
...-.++.++++.+..|+.|+++.| .++| ..|-+-.++++|++++|++.+.-
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~------------------------- 189 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE------------------------- 189 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-------------------------
Confidence 3445678999999999999999999 7888 67777788999999998863210
Q ss_pred CCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcC
Q 035831 97 DVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRL 175 (443)
Q Consensus 97 ~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l 175 (443)
...|.++.+|..|.|++|+|+...+..|.++++|+.|+|..|+|..+.. .|.++.+|+.|.|..|.|
T Consensus 190 ------------~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 190 ------------TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred ------------cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 1134456679999999999998888889999999999999999998866 999999999999999999
Q ss_pred cccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhh
Q 035831 176 VGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSI 253 (443)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l 253 (443)
...-...|..+.++++|+|+.|+++..-..+++.+ +|+.|++++|.|...-++.+.. .+|++|+|++|+++...+.+|
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 98888899999999999999999996666777776 9999999999998777777765 789999999999998889999
Q ss_pred hcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCc---hhccCCCCCceEEcccccCCccCchhhcCCCC
Q 035831 254 GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVP---QSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 330 (443)
..+..|++|.|++|+++..-..+|..+++|++|||++|.|...+. ..|.++++|+.|++.+|+|..+.-.+|.++..
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 999999999999999997777789999999999999999986553 45788999999999999999888889999999
Q ss_pred CCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCC
Q 035831 331 LSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLA 366 (443)
Q Consensus 331 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~ 366 (443)
|++|||.+|.|..+.+++|..+ .|+.|-+..-.+-
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 9999999999999999999988 7888877655443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.3e-30 Score=248.03 Aligned_cols=316 Identities=21% Similarity=0.298 Sum_probs=213.0
Q ss_pred hHHHHHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHH---HHHHHhccCCCCCCCCCCCCCCCCCcc
Q 035831 27 DAEAAFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVAL---QAFKKSIYSDPFNTTANWVDNTDVCSY 101 (443)
Q Consensus 27 ~~~~~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l---~~~~~~~~~~~~~~~~~w~~~~~~c~~ 101 (443)
+.++..+++++-|.+.+. ..+|+.+.++.+|++|.+..|++......| ..++..+..+..-..+
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns----------- 93 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS----------- 93 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-----------
Confidence 678889999999998887 889999999999999999999876554443 3444444333221111
Q ss_pred cceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCC
Q 035831 102 NGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFP 180 (443)
Q Consensus 102 ~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 180 (443)
||. .+..++..|+.|||++|+++ +.|..+..-+++-+|+|++|+|..++. -|.+++.|-.||||+|++. .+|
T Consensus 94 -GiP----~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 94 -GIP----TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred -CCC----chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC
Confidence 111 13346778999999999998 788889999999999999999998887 7889999999999999998 778
Q ss_pred cccCCCCCCcEEecccccCCC-------------------------CCCCcccCC-CCCEEEccCCcccccCCccccC-C
Q 035831 181 RVVLSWPSLKFLDLRYNNFEG-------------------------ELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-S 233 (443)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~-------------------------~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~ 233 (443)
..+..+.+|++|+|++|.+.- .+|..+..+ +|..+|++.|.+. .+|+.+-. .
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~ 245 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR 245 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence 888888899999999887541 223333332 4555555555555 44444322 5
Q ss_pred ccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCc-CCchhccCCCCCceEEc
Q 035831 234 TVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHG-NVPQSFSSLESIQTLIL 312 (443)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L 312 (443)
+|+.|+|++|+|+ .+....+...+|++|++|.|+++ .+|.++..+++|+.|.+.+|+++- -+|..++++..|+.+..
T Consensus 246 ~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 246 NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 5566666666655 33334444555666666666665 566666666666666666665542 34556666666666666
Q ss_pred ccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCC
Q 035831 313 SHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 313 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l 365 (443)
++|.+. .+|+.++.+..|+.|.|++|++-.. |+++.-++.|..||+..|.=
T Consensus 324 anN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence 666665 5566666666666666666666543 55566666666666666643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=9.2e-30 Score=235.05 Aligned_cols=249 Identities=24% Similarity=0.364 Sum_probs=190.6
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEE
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 192 (443)
.+.+|..|+|..|+|. .+| +|.++..|+.|++..|+|.-++. ...++.+|.+|||.+|+++ ..|+.+..+.+|++|
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERL 280 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhh
Confidence 4566777778888877 555 67888888888888888777766 5568889999999999998 889999999999999
Q ss_pred ecccccCCCCCCCcccCCCCCEEEccCCcccc------------------------------------------------
Q 035831 193 DLRYNNFEGELPCDLFDMKLDALFLNNNRFSY------------------------------------------------ 224 (443)
Q Consensus 193 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~------------------------------------------------ 224 (443)
|+++|.|+ .+|..+++++|+.|-+.+|.+..
T Consensus 281 DlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 281 DLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred cccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 99999999 88888888888888888886531
Q ss_pred ----------------cCCccccC----CccceeeeccCCCC-----------------------CccchhhhcCCcCce
Q 035831 225 ----------------SIPEKLGR----STVSVVTFAHNNFN-----------------------GCIPRSIGNMQNLNE 261 (443)
Q Consensus 225 ----------------~~~~~~~~----~~L~~L~L~~n~l~-----------------------~~~~~~l~~l~~L~~ 261 (443)
.+|+.... .-+..++++.|++. +.++..++.+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 00000000 00234445554432 345666777788888
Q ss_pred eeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcC
Q 035831 262 IILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYF 341 (443)
Q Consensus 262 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 341 (443)
|+|++|-+. .+|..++.+..|+.||++.|++. .+|..+..+..++.+-.++|++....+..+.++.+|..||+.+|.+
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 888888887 67888888888888888888887 7787777777777777778888877777789999999999999999
Q ss_pred CCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 342 QGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
..++| .++++.+|++|+++||+|+ .|.
T Consensus 518 q~IPp-~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 518 QQIPP-ILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred hhCCh-hhccccceeEEEecCCccC-CCH
Confidence 87754 5889999999999999998 444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.4e-28 Score=236.64 Aligned_cols=299 Identities=22% Similarity=0.327 Sum_probs=239.9
Q ss_pred HHHHHHHhhhcCCCCC----CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccce
Q 035831 29 EAAFITRRQLLTLPKD----GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGV 104 (443)
Q Consensus 29 ~~~~~~~l~~l~l~~~----~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv 104 (443)
+++.+.+|+.+.+..| ..+|.++.++..|++||++.|+++..+..|..-|..+..+- +++.+
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL--------------S~N~I 138 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL--------------SYNNI 138 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc--------------ccCcc
Confidence 4555566666666666 67888999999999999999999998888887776654221 12223
Q ss_pred ecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCc-ccCCcc
Q 035831 105 FCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLV-GSFPRV 182 (443)
Q Consensus 105 ~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~~~ 182 (443)
.-.+..-|.++..|-.|||++|++. .+|..+..+.+|++|+|++|.+...-- .+..+++|++|.+++.+-+ ..+|.+
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 3333333445666777777777777 667777777777888888777665443 5566677777777776543 468889
Q ss_pred cCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCc
Q 035831 183 VLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLN 260 (443)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 260 (443)
+..+.+|..+|++.|.+. .+|+.++.. +|+.|+|++|+|+ ++....+. .++++|+++.|+++ .+|+++.++++|+
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 999999999999999999 999999987 9999999999998 44444444 67999999999999 7999999999999
Q ss_pred eeeccCcccC-ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCC
Q 035831 261 EIILSDNKLS-GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYN 339 (443)
Q Consensus 261 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 339 (443)
.|.+.+|+++ .-+|+.++.+.+|+++..++|.+. .+|+.+..+..|+.|.|++|++. ..|+++.-++.|+.||+..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 9999999886 348999999999999999999998 89999999999999999999998 67899999999999999999
Q ss_pred cCCCCCCC
Q 035831 340 YFQGLGNE 347 (443)
Q Consensus 340 ~l~~~~~~ 347 (443)
.=--.+|.
T Consensus 373 pnLVMPPK 380 (1255)
T KOG0444|consen 373 PNLVMPPK 380 (1255)
T ss_pred cCccCCCC
Confidence 65444443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=4.5e-28 Score=223.95 Aligned_cols=338 Identities=23% Similarity=0.317 Sum_probs=226.0
Q ss_pred hHHHHHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccC-CCCCCCCCCCCCCCCCc---
Q 035831 27 DAEAAFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYS-DPFNTTANWVDNTDVCS--- 100 (443)
Q Consensus 27 ~~~~~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~w~~~~~~c~--- 100 (443)
+.+++.++.+..++++.| .++|..+..+.++..++.+.|+++............... +..+...+...+...|.
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLS 163 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHH
Confidence 566777777777777777 666766666677766766666554332222222111111 11222333332222221
Q ss_pred -----ccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcC
Q 035831 101 -----YNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRL 175 (443)
Q Consensus 101 -----~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l 175 (443)
.+.++..+. +.-+++.|++||...|.++ .+|..++.+..|+.|+|..|+|..++ .|.++..|++|+++.|+|
T Consensus 164 ~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 164 KLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HhhccccchhhCCH-HHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH
Confidence 111111111 1123677888999888887 78889999999999999999998877 899999999999999999
Q ss_pred cccCCccc-CCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCc-----
Q 035831 176 VGSFPRVV-LSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGC----- 248 (443)
Q Consensus 176 ~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~----- 248 (443)
. .+|.+. .++.+|.+|||.+|+++ +.|+.+... +|++||+++|.|+ .+|..++...|+.|-+.+|.+...
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREII 317 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHH
Confidence 8 566555 48999999999999999 899998887 7999999999999 788888888888888888865310
Q ss_pred ---------------------------------cch---hhhcCCcCc--------------------------eeeccC
Q 035831 249 ---------------------------------IPR---SIGNMQNLN--------------------------EIILSD 266 (443)
Q Consensus 249 ---------------------------------~~~---~l~~l~~L~--------------------------~L~Ls~ 266 (443)
.+. ....+.+.+ ..+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 000 001111223 334444
Q ss_pred cccC-----------------------ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCch
Q 035831 267 NKLS-----------------------GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323 (443)
Q Consensus 267 n~l~-----------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 323 (443)
|++. +.+|..+..+++|..|+|++|-+. .+|..++.+..|+.|++++|++. ..|.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH
Confidence 4443 123344555666667777766666 56666666666777777777666 4556
Q ss_pred hhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccc
Q 035831 324 QICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQK 372 (443)
Q Consensus 324 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~ 372 (443)
.+..+..++.+-.++|++..+.+..+.++..|..||+.+|.|..+|+..
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L 524 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL 524 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhh
Confidence 5555556666666667777777777888999999999999999999854
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=4.9e-24 Score=196.98 Aligned_cols=268 Identities=21% Similarity=0.211 Sum_probs=184.2
Q ss_pred CCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccC-CcC
Q 035831 98 VCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSN-NRL 175 (443)
Q Consensus 98 ~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~-n~l 175 (443)
.|+-.|.+-.+..- -...++|+|..|+|+.+.+.+|+.+++|+.|||++|+|+.+.+ +|.++.+|..|-+-+ |+|
T Consensus 52 dCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 35555555544311 1456789999999998888899999999999999999999998 999999987776655 999
Q ss_pred cccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCc-cc-cCCccceeeeccCCCC------
Q 035831 176 VGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPE-KL-GRSTVSVVTFAHNNFN------ 246 (443)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~------ 246 (443)
+......|+++..|+.|.+.-|++.....+.+..+ ++..|.+..|.+. .++. .+ +...++.+.+..|.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccc
Confidence 97777788888889988888888885555555554 7778888888876 3333 33 2355677766666521
Q ss_pred ------CccchhhhcCCcCceeeccCcccC-------------------------ccCc-cccCCCCCccEEEeeCCcCC
Q 035831 247 ------GCIPRSIGNMQNLNEIILSDNKLS-------------------------GCFP-SEIGSLKNLRVFDVSSNLFH 294 (443)
Q Consensus 247 ------~~~~~~l~~l~~L~~L~Ls~n~l~-------------------------~~~p-~~l~~l~~L~~L~Ls~N~l~ 294 (443)
...+..++......-..+.++++. +..| ..|..+++|++|+|++|+|+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 111222222222222222222222 1222 34667777777777777777
Q ss_pred cCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCc
Q 035831 295 GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERP 369 (443)
Q Consensus 295 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p 369 (443)
++-..+|.++..+++|+|..|+|..+-...|.++..|+.|+|.+|+|+.+.|.+|..+..|..|++-.|.+.+..
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 777777777777777777777777666667777777777777777777777777777777777777777665533
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-24 Score=217.82 Aligned_cols=219 Identities=22% Similarity=0.335 Sum_probs=150.0
Q ss_pred CCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCC-----------------------cccCCCCCCcEEeccc
Q 035831 140 TDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFP-----------------------RVVLSWPSLKFLDLRY 196 (443)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~l~~l~~L~~L~L~~ 196 (443)
.+|+++++++|++.+++..+..+.+|+.++..+|+++ .+| ....+++.|++|+|..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 3455555555555555545555555555555555554 344 4444455555555555
Q ss_pred ccCCCCCCCcccCC---CCCEEEccCCcccccCCcccc--CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 197 NNFEGELPCDLFDM---KLDALFLNNNRFSYSIPEKLG--RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 197 n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
|++. .+|+.++.. .|+.|+.+.|++. ..|..-. ...|+.|++.+|.+++..-..+.++.+|+.|+|++|++..
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 5555 444433331 3444444444444 2221111 1447888999999988877778888999999999999984
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPG 351 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 351 (443)
.....+.++..|++|+||+|+++ .+|..+..+..|++|...+|+|. ..| .+..++.|+.+|++.|+++...-.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 44456778889999999999998 78888888999999999999988 445 6888999999999999998765443334
Q ss_pred CCcCceeeCCCCC
Q 035831 352 SKVNSAFDDASNC 364 (443)
Q Consensus 352 ~~~L~~L~l~~N~ 364 (443)
.++|++||++||.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 4789999999996
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-23 Score=208.04 Aligned_cols=242 Identities=24% Similarity=0.324 Sum_probs=165.9
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc
Q 035831 118 VAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN 197 (443)
Q Consensus 118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 197 (443)
++.+++..|.+.+.++.++..+++ .|+|++|.+.. ..+..+.+|+.|....|++.... -..++|+.|+.++|
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHN 229 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccC
Confidence 778888888888888888888877 78999998872 25677777888888888776221 12356777777777
Q ss_pred cCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccc
Q 035831 198 NFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSE 276 (443)
Q Consensus 198 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 276 (443)
.++ .........+|+++++++|+++ .+|++++. .+++.+...+|++. .+|..+..+.+|+.|++.+|.+. -+|..
T Consensus 230 ~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 230 PLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred cce-eeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence 776 4444444457777777777777 55555544 66777777777774 56666666777777777777776 56666
Q ss_pred cCCCCCccEEEeeCCcCCcCCchhcc--------------------------CCCCCceEEcccccCCccCchhhcCCCC
Q 035831 277 IGSLKNLRVFDVSSNLFHGNVPQSFS--------------------------SLESIQTLILSHNQLTGFVSEQICKLPS 330 (443)
Q Consensus 277 l~~l~~L~~L~Ls~N~l~~~~p~~l~--------------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 330 (443)
..+++.|++|+|..|+|. ..|+.+- .++.|+.|++.+|.+++..-..+.+..+
T Consensus 306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 666777777777777766 2332110 1234667777777777666666777777
Q ss_pred CCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccc
Q 035831 331 LSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQK 372 (443)
Q Consensus 331 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~ 372 (443)
|+.|+|++|++..++..++.++..|+.|+|+||.++.+|+..
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv 426 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV 426 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH
Confidence 777777777777777677777777777777777777777543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.3e-19 Score=200.97 Aligned_cols=238 Identities=20% Similarity=0.213 Sum_probs=120.9
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
+++|+.|+|+++.....+| .++.+++|++|+|++|......+ .+..+++|++|++++|...+.+|..+ ++++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 3445555555543332333 24555555555555544333333 45555555555555543333444433 455555555
Q ss_pred cccccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-------------------------------Cccceeeecc
Q 035831 194 LRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-------------------------------STVSVVTFAH 242 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-------------------------------~~L~~L~L~~ 242 (443)
+++|.....+|.. ..+|++|++++|.+. .+|..+.. .+|+.|++++
T Consensus 711 Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 711 LSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCCCCCccccccc--cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 5555433333321 124556666666554 33332211 2345555555
Q ss_pred CCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCc
Q 035831 243 NNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVS 322 (443)
Q Consensus 243 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 322 (443)
|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|++|.|. .+|
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cCh
Confidence 55555555556666666666666553332445443 4556666666655433333332 245666666666666 345
Q ss_pred hhhcCCCCCCEEEecC-CcCCCCCCCCCCCCCcCceeeCCCC
Q 035831 323 EQICKLPSLSNFTFSY-NYFQGLGNECIPGSKVNSAFDDASN 363 (443)
Q Consensus 323 ~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~L~l~~N 363 (443)
.++..+++|+.|++++ |++.++ +..+..++.|+.++++++
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDC 903 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCC
Confidence 5666677777777766 345443 334555566666666554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=2e-20 Score=194.35 Aligned_cols=260 Identities=20% Similarity=0.280 Sum_probs=191.2
Q ss_pred hhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCCCCCC
Q 035831 37 QLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPALDDPN 114 (443)
Q Consensus 37 ~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~~~ 114 (443)
..|+|+++ ..+|..+.. .|+.|.+.+|++.... ..
T Consensus 204 ~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP-----------------------------------------~l 240 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP-----------------------------------------AL 240 (788)
T ss_pred cEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCC-----------------------------------------CC
Confidence 45677777 677876643 6777877777643110 01
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
.++|+.|+|++|+|+. +|.. ..+|+.|++++|.+..++.. ..+|+.|++++|+++ .+|.. .++|++|++
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCccc-ccccc---ccccceeEC
Confidence 2568899999999984 4542 46888999999998876542 256888999999998 45542 468999999
Q ss_pred ccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc
Q 035831 195 RYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
++|+++ .+|.. ..+|+.|++++|.++ .+|... .+|+.|+|++|++.+ +|.. ..+|+.|++++|+|+ .+|
T Consensus 310 S~N~L~-~Lp~l--p~~L~~L~Ls~N~L~-~LP~lp--~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP 378 (788)
T PRK15387 310 SDNQLA-SLPAL--PSELCKLWAYNNQLT-SLPTLP--SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLP 378 (788)
T ss_pred CCCccc-cCCCC--cccccccccccCccc-cccccc--cccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCc
Confidence 999998 56642 236888999999997 455422 478999999999984 4442 357888899999998 466
Q ss_pred cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCc
Q 035831 275 SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKV 354 (443)
Q Consensus 275 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 354 (443)
.. ..+|+.|++++|+|+ .+|.. ..+|+.|++++|+|++ +|.. ..+|+.|++++|+|+.+ |..+..+..
T Consensus 379 ~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~ 446 (788)
T PRK15387 379 AL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSS 446 (788)
T ss_pred cc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccC
Confidence 53 357899999999998 45543 3578999999999986 4443 34678899999999864 677888899
Q ss_pred CceeeCCCCCCCCCccccc
Q 035831 355 NSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 355 L~~L~l~~N~l~~~p~~~~ 373 (443)
|..|++++|+|++...+..
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 9999999999987655543
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=8.2e-23 Score=188.96 Aligned_cols=268 Identities=18% Similarity=0.277 Sum_probs=207.6
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccc-c
Q 035831 120 GIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRY-N 197 (443)
Q Consensus 120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n 197 (443)
.+|-++-+++ .+|..+- ..-..++|..|+|+.+++ +|+.+++|+.||||+|+|+.+-|++|.++.+|..|-+.+ |
T Consensus 50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3455566666 4554443 356789999999999999 999999999999999999999999999999988887776 9
Q ss_pred cCCCCCCCcccC-C-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccC----
Q 035831 198 NFEGELPCDLFD-M-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLS---- 270 (443)
Q Consensus 198 ~l~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---- 270 (443)
+|+ .+|...+. + .++.|.+.-|++.-...+.+.. .++..|.+.+|.+...-...|..+.+++.+.+..|.+-
T Consensus 127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 999 77776665 3 8999999999888555555544 67888888999888555558888899999988888722
Q ss_pred --------ccCccccCCCCCccEEEeeCCcC-------------------------CcCC-chhccCCCCCceEEccccc
Q 035831 271 --------GCFPSEIGSLKNLRVFDVSSNLF-------------------------HGNV-PQSFSSLESIQTLILSHNQ 316 (443)
Q Consensus 271 --------~~~p~~l~~l~~L~~L~Ls~N~l-------------------------~~~~-p~~l~~l~~L~~L~Ls~N~ 316 (443)
...+..++......-..+.++++ .+.- ...|.++++|++|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 12233333332222222222221 1122 2457889999999999999
Q ss_pred CCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC----CCCccCCCCCCCCC
Q 035831 317 LTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC----EPVVSNPVDCSRDM 391 (443)
Q Consensus 317 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~----~~~~~np~~c~~~~ 391 (443)
|+++-+.+|.+...+++|.|..|+|..+....|.++..|+.|+|.+|+|+.+-+..|.... ..+..|||.|+|..
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 9999999999999999999999999998888999999999999999999998887776433 35679999999964
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=5.5e-20 Score=192.07 Aligned_cols=227 Identities=20% Similarity=0.362 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRY 196 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 196 (443)
+.+.|++++++++ .+|..+. .+|+.|+|++|+++.++..+. .+|++|++++|+++ .+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 3456666666666 3444332 356666666666665544332 35666666666666 3444332 3566666666
Q ss_pred ccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccc
Q 035831 197 NNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSE 276 (443)
Q Consensus 197 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 276 (443)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|++++ +|..+. .+|+.|++++|+++ .+|..
T Consensus 251 N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 251 NRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred CccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcc
Confidence 6666 5555443 35666666666666 3454433 356666666666653 333222 35666666666665 34433
Q ss_pred cCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCc
Q 035831 277 IGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNS 356 (443)
Q Consensus 277 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 356 (443)
+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+. +|..+. ++|+.|++++|+|+.+++. +. ..|+
T Consensus 323 l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~ 391 (754)
T PRK15370 323 L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTNLPEN-LP--AALQ 391 (754)
T ss_pred c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCCCCHh-HH--HHHH
Confidence 2 2456666666666653 444332 456666666666653 333332 4566666666666654322 21 2455
Q ss_pred eeeCCCCCCCCCcc
Q 035831 357 AFDDASNCLAERPS 370 (443)
Q Consensus 357 ~L~l~~N~l~~~p~ 370 (443)
.|++++|+|..+|.
T Consensus 392 ~LdLs~N~L~~LP~ 405 (754)
T PRK15370 392 IMQASRNNLVRLPE 405 (754)
T ss_pred HHhhccCCcccCch
Confidence 66666666665554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.2e-19 Score=189.61 Aligned_cols=228 Identities=24% Similarity=0.365 Sum_probs=183.2
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
..++.|+|++|+|+ .+|..+. .+|++|++++|+++.++..+. .+|+.|+|++|.+. .+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 46899999999999 5666554 589999999999998765443 47999999999998 6676664 589999999
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
+|+++ .+|..+. .+|+.|++++|+++ .+|..+. ..|+.|++++|++.. +|..+. ++|+.|++++|.++ .+|.
T Consensus 271 ~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 342 (754)
T PRK15370 271 HNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLPA 342 (754)
T ss_pred CCccC-ccccccC-CCCcEEECCCCccc-cCcccch-hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc-cCCh
Confidence 99999 7887664 48999999999998 4565443 479999999999985 454432 68999999999999 4776
Q ss_pred ccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCC---CCCCCC
Q 035831 276 EIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN---ECIPGS 352 (443)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~ 352 (443)
.+. ++|+.|++++|+|+ .+|..+. ++|+.|+|++|+|+++ |..+. ..|+.|++++|+|++++. ..+...
T Consensus 343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~ 414 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVRLPESLPHFRGEG 414 (754)
T ss_pred hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcccCchhHHHHhhcC
Confidence 653 79999999999998 5776653 6899999999999965 44443 369999999999986532 233455
Q ss_pred CcCceeeCCCCCCCC
Q 035831 353 KVNSAFDDASNCLAE 367 (443)
Q Consensus 353 ~~L~~L~l~~N~l~~ 367 (443)
+.+..+++.+|+|+.
T Consensus 415 ~~l~~L~L~~Npls~ 429 (754)
T PRK15370 415 PQPTRIIVEYNPFSE 429 (754)
T ss_pred CCccEEEeeCCCccH
Confidence 788999999999874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.9e-19 Score=185.72 Aligned_cols=242 Identities=21% Similarity=0.259 Sum_probs=186.6
Q ss_pred HHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCCC
Q 035831 34 TRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPALD 111 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~ 111 (443)
..|+.|++.+| +.+|.. ..+|++|++++|++.... .+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP-------------------~l------------------- 260 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLP-------------------VL------------------- 260 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCccc-------------------Cc-------------------
Confidence 37899999999 777753 467999999888753211 00
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcE
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKF 191 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 191 (443)
..+|+.|++++|.++ .+|.. ..+|+.|++++|+++.++. ..++|++|+|++|++++ +|... .+|+.
T Consensus 261 ---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~ 326 (788)
T PRK15387 261 ---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPALP---SELCK 326 (788)
T ss_pred ---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCCc---ccccc
Confidence 146889999999988 44443 3578899999999987754 24689999999999984 44422 46888
Q ss_pred EecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 192 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
|++++|.++ .+|.. ..+|++|+|++|+|+ .+|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|+++
T Consensus 327 L~Ls~N~L~-~LP~l--p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt- 395 (788)
T PRK15387 327 LWAYNNQLT-SLPTL--PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT- 395 (788)
T ss_pred cccccCccc-ccccc--ccccceEecCCCccC-CCCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-
Confidence 999999998 57642 248999999999998 45543 2568889999999984 5543 357999999999998
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECI 349 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 349 (443)
.+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++..+..+
T Consensus 396 ~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 396 SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 46643 367999999999998 466543 46889999999998 568889999999999999999998766544
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.1e-17 Score=185.61 Aligned_cols=248 Identities=18% Similarity=0.171 Sum_probs=180.9
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
...+|+.|++.++.+. .++..+..+++|+.|+|+++......+.++.+++|++|+|++|.....+|..+.++++|+.|+
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 4577888999988887 567778888999999998876555556788889999999998877668888889999999999
Q ss_pred cccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhh--------------------
Q 035831 194 LRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSI-------------------- 253 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------------------- 253 (443)
+++|.....+|..+...+|++|++++|.....+|.. ..+|++|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 998765557887775558999999988765555543 246888889888875 333322
Q ss_pred ----------hcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCch
Q 035831 254 ----------GNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323 (443)
Q Consensus 254 ----------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 323 (443)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 112456677777776655677777777888888887765444566554 567778888877754434433
Q ss_pred hhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCC-CCCCCCcc
Q 035831 324 QICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDAS-NCLAERPS 370 (443)
Q Consensus 324 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~-N~l~~~p~ 370 (443)
. ..+|+.|++++|.|+.+ |..+..+++|+.|++.+ |.+..++.
T Consensus 844 ~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 844 I---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred c---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCc
Confidence 2 35678888888888764 56677888888888887 66776655
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.5e-20 Score=155.50 Aligned_cols=181 Identities=24% Similarity=0.441 Sum_probs=107.8
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
++.+++.|.|++|.++ .+|..++.+.+|+.|++++|+|..++..++.+++|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 3455666666666666 4555566666666666666666666656666666666666666665 5666666666666666
Q ss_pred cccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 194 LRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
|.+|++... .+|..|..+..|+.|+|++|.+. .+
T Consensus 109 ltynnl~e~---------------------------------------------~lpgnff~m~tlralyl~dndfe-~l 142 (264)
T KOG0617|consen 109 LTYNNLNEN---------------------------------------------SLPGNFFYMTTLRALYLGDNDFE-IL 142 (264)
T ss_pred ccccccccc---------------------------------------------cCCcchhHHHHHHHHHhcCCCcc-cC
Confidence 666655421 24444555666666666666666 56
Q ss_pred ccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCC---CCCEEEecCCcCCCC
Q 035831 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLP---SLSNFTFSYNYFQGL 344 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~---~L~~L~Ls~N~l~~~ 344 (443)
|..++++++|+.|.+..|.+- .+|..++.+..|++|.+.+|+++-. |..++.+. +=+.+.+.+|.+...
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl-ppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL-PPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec-ChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 666666666666666666665 5666666666666666666666633 33343332 122344455555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.3e-19 Score=174.55 Aligned_cols=249 Identities=22% Similarity=0.222 Sum_probs=152.7
Q ss_pred CcEEEEEcCCCCCccc----CchhhcCCCCCCEEEccCCcCCcc------CC-CccCCCCCCEEEccCCcCcccCCcccC
Q 035831 116 TVVAGIDLNGNDIAGS----FPAELGLLTDLALFHVNSNRFCGI------IP-DFSDWKLMFEFDVSNNRLVGSFPRVVL 184 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~------~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 184 (443)
..+++|+++++.++.. ++..+...+.+++|+++++.+.+. .. .+..+.+|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4578888888887532 445566777788888888877631 11 456677888888888888755555554
Q ss_pred CCCC---CcEEecccccCCCCCC----CcccC--CCCCEEEccCCcccccCCcc----c-cCCccceeeeccCCCCCc--
Q 035831 185 SWPS---LKFLDLRYNNFEGELP----CDLFD--MKLDALFLNNNRFSYSIPEK----L-GRSTVSVVTFAHNNFNGC-- 248 (443)
Q Consensus 185 ~l~~---L~~L~L~~n~l~~~~~----~~~~~--~~L~~L~L~~n~l~~~~~~~----~-~~~~L~~L~L~~n~l~~~-- 248 (443)
.+.+ |++|++++|.+.+... ..+.. .+|++|++++|.+++..... + ...+|++|++++|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 8888888887763111 11222 36778888888776432221 1 124577777777777642
Q ss_pred --cchhhhcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcCCchhcc-----CCCCCceEEcccccC
Q 035831 249 --IPRSIGNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGNVPQSFS-----SLESIQTLILSHNQL 317 (443)
Q Consensus 249 --~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l 317 (443)
++..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ....|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 233344556777777777776532 233455667777777777777642222221 135777777777777
Q ss_pred Cc----cCchhhcCCCCCCEEEecCCcCCCCCC----CCCCCC-CcCceeeCCCCC
Q 035831 318 TG----FVSEQICKLPSLSNFTFSYNYFQGLGN----ECIPGS-KVNSAFDDASNC 364 (443)
Q Consensus 318 ~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~~-~~L~~L~l~~N~ 364 (443)
++ .+...+..+++|+++++++|.++.... ..+... ..++.+++.+|+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 62 123445556777777777777775532 222233 566677766665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.9e-20 Score=152.44 Aligned_cols=162 Identities=23% Similarity=0.403 Sum_probs=140.1
Q ss_pred hcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEE
Q 035831 136 LGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDAL 215 (443)
Q Consensus 136 ~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 215 (443)
+.++.+++.|.|++|+++.++|.++.+.+|+.|++++|+|+ .+|..++.+++|+.|+++-|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------------
Confidence 44567778888888888888888888888888888888887 67778888888888887777766
Q ss_pred EccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc-cCccccCCCCCccEEEeeCCcCC
Q 035831 216 FLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG-CFPSEIGSLKNLRVFDVSSNLFH 294 (443)
Q Consensus 216 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~ 294 (443)
..|..|+.++.|+.|||.+|++.. .+|..|..+..|+.|+|++|.+.
T Consensus 93 --------------------------------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 93 --------------------------------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred --------------------------------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 567778889999999999999863 57888889999999999999998
Q ss_pred cCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCC
Q 035831 295 GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNE 347 (443)
Q Consensus 295 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 347 (443)
.+|..++++++|+.|.+.+|.+- ..|..++.+..|++|.+.+|+++-++|+
T Consensus 141 -~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 141 -ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred -cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 88999999999999999999988 5688999999999999999999988765
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.5e-19 Score=174.21 Aligned_cols=251 Identities=20% Similarity=0.228 Sum_probs=188.5
Q ss_pred EEEcCCCCCc-ccCchhhcCCCCCCEEEccCCcCCcc----CC-CccCCCCCCEEEccCCcCcc------cCCcccCCCC
Q 035831 120 GIDLNGNDIA-GSFPAELGLLTDLALFHVNSNRFCGI----IP-DFSDWKLMFEFDVSNNRLVG------SFPRVVLSWP 187 (443)
Q Consensus 120 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~----~~-~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~ 187 (443)
.|+|..+.++ ......+..+.+|+.|+++++.++.. .. .+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4778888887 34455677788899999999998543 12 46677889999999998862 2345677889
Q ss_pred CCcEEecccccCCCCCCCcccCC-C---CCEEEccCCcccccCC----cccc-C-CccceeeeccCCCCCc----cchhh
Q 035831 188 SLKFLDLRYNNFEGELPCDLFDM-K---LDALFLNNNRFSYSIP----EKLG-R-STVSVVTFAHNNFNGC----IPRSI 253 (443)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~~~~-~---L~~L~L~~n~l~~~~~----~~~~-~-~~L~~L~L~~n~l~~~----~~~~l 253 (443)
+|++|++++|.+.+..+..+... + |++|++++|++++... ..+. . .+|++|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999999986555544433 4 9999999999874222 2222 2 5799999999999843 34456
Q ss_pred hcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcC----CchhccCCCCCceEEcccccCCccCchhh
Q 035831 254 GNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQSFSSLESIQTLILSHNQLTGFVSEQI 325 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l 325 (443)
..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 7778999999999999842 334456678999999999998743 33456678899999999999986433333
Q ss_pred c-----CCCCCCEEEecCCcCCCCC----CCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 326 C-----KLPSLSNFTFSYNYFQGLG----NECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 326 ~-----~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
. ....|++|++++|.++... ...+...+.|+.+++++|.+...+.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 2 2479999999999997322 2345566899999999999987544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=2.1e-13 Score=141.99 Aligned_cols=150 Identities=25% Similarity=0.406 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC-----cccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCC
Q 035831 67 LKKAYVALQAFKKSIYSDPFNTTANWVDNTDVC-----SYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTD 141 (443)
Q Consensus 67 l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 141 (443)
...+..+|+.+|..+. ++. ..+|. + +.| .|.|+.|..... .....++.|+|++|.+.+.+|..++.+++
T Consensus 370 ~~~~~~aL~~~k~~~~-~~~--~~~W~-g-~~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 370 LLEEVSALQTLKSSLG-LPL--RFGWN-G-DPCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred CchHHHHHHHHHHhcC-Ccc--cCCCC-C-CCCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 4567788999998763 322 23786 2 455 699999963211 11235899999999999999999999999
Q ss_pred CCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC--CCCEEEcc
Q 035831 142 LALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLN 218 (443)
Q Consensus 142 L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~L~ 218 (443)
|+.|+|++|++.+..+ .++.+++|+.|+|++|++++.+|..+.++++|++|+|++|.++|.+|..+... ++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999998888 89999999999999999999999999999999999999999999999877653 55667776
Q ss_pred CCcc
Q 035831 219 NNRF 222 (443)
Q Consensus 219 ~n~l 222 (443)
+|..
T Consensus 524 ~N~~ 527 (623)
T PLN03150 524 DNAG 527 (623)
T ss_pred CCcc
Confidence 6653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.46 E-value=2.6e-15 Score=145.45 Aligned_cols=174 Identities=28% Similarity=0.494 Sum_probs=132.7
Q ss_pred CCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEcc
Q 035831 139 LTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLN 218 (443)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 218 (443)
+..-...||+.|++..++..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|++. .+|..++.+-|+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEe
Confidence 44455677777777777666777777777777777777 67777788888888888888887 77887877788888888
Q ss_pred CCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCC
Q 035831 219 NNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV 297 (443)
Q Consensus 219 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 297 (443)
+|+++ .+|..++. .+|..|+.+.|++. .+|..++++.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence 88887 66666654 56777888888877 56666778888888888888887 577777644 5778888888887 77
Q ss_pred chhccCCCCCceEEcccccCCc
Q 035831 298 PQSFSSLESIQTLILSHNQLTG 319 (443)
Q Consensus 298 p~~l~~l~~L~~L~Ls~N~l~~ 319 (443)
|-.|.+|..|++|.|.+|.++.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC
Confidence 8888888888888888888873
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=2.5e-15 Score=145.60 Aligned_cols=194 Identities=24% Similarity=0.379 Sum_probs=167.0
Q ss_pred EEccCCcCCccCC-Cc-cCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCc
Q 035831 145 FHVNSNRFCGIIP-DF-SDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNR 221 (443)
Q Consensus 145 L~L~~n~i~~~~~-~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 221 (443)
|.|++-++...+- ++ -.+.--...||+.|++. .+|..+..+..|+.+.|+.|.+. .+|..+..+ .|.+|+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 3444444444432 22 34455567899999998 89999999999999999999999 999999887 89999999999
Q ss_pred ccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhc
Q 035831 222 FSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSF 301 (443)
Q Consensus 222 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 301 (443)
++ .+|..+....|+.|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|..+
T Consensus 133 lS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El 208 (722)
T KOG0532|consen 133 LS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEEL 208 (722)
T ss_pred hh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHH
Confidence 99 8999999999999999999998 78888998899999999999998 78999999999999999999998 677778
Q ss_pred cCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCC
Q 035831 302 SSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN 346 (443)
Q Consensus 302 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 346 (443)
..+ .|..||++.|++. .+|-.|.+|..|++|-|.+|.++..+.
T Consensus 209 ~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 765 5899999999999 678889999999999999999988654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=1.3e-13 Score=136.80 Aligned_cols=196 Identities=32% Similarity=0.451 Sum_probs=127.7
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCC-CCCEEEccCCcCcccCCcccCCCCCCcEEeccccc
Q 035831 120 GIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWK-LMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNN 198 (443)
Q Consensus 120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 198 (443)
.+++..+.+.. ....+..++.++.|++.+|.++.+.+....+. +|++|++++|++. .++..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 57777777642 33445666788888888888888877666664 8888888888887 555677888888888888888
Q ss_pred CCCCCCCcc-cCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccc
Q 035831 199 FEGELPCDL-FDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSE 276 (443)
Q Consensus 199 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 276 (443)
+. .++... ....|+.|++++|++. .+|..... ..|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 88 666666 3447788888888877 55555433 33666666666432 23344555566666666666655 33455
Q ss_pred cCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCch
Q 035831 277 IGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE 323 (443)
Q Consensus 277 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 323 (443)
++.+.+++.|++++|.++.. +. +..+.+++.|++++|.+....+.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 55555666666666666532 22 55556666666666666544443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=3.7e-13 Score=133.63 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=140.0
Q ss_pred EEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEecccccCCCCCCCcccCC-CCCEEEccCCc
Q 035831 144 LFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWP-SLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNR 221 (443)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 221 (443)
.+++..|.+......+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .++..+..+ +|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 577777777555445566678888888888888 5566666664 8888888888888 666555554 88888888888
Q ss_pred ccccCCccc-cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchh
Q 035831 222 FSYSIPEKL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300 (443)
Q Consensus 222 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 300 (443)
+. .++... ....++.|++++|++. .+|..+.....|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 87 555554 5567778888888877 45555555566788888888544 35666777777777777777776 33566
Q ss_pred ccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCC
Q 035831 301 FSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECI 349 (443)
Q Consensus 301 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 349 (443)
++.+..++.|++++|+++.... +..+.+++.|++++|.+....+...
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 7777778888888888775533 6777778888888887777655433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=2.8e-13 Score=122.06 Aligned_cols=134 Identities=24% Similarity=0.308 Sum_probs=109.1
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEc
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL 312 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 312 (443)
..|+++||++|.|+ .+.++..-++.++.|++++|.|. .+ ..+..+++|+.|||++|.++ .+-.+-.++-+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34788888888887 56667777889999999999998 33 34788899999999999988 45556667788999999
Q ss_pred ccccCCccCchhhcCCCCCCEEEecCCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCcccc
Q 035831 313 SHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPSQK 372 (443)
Q Consensus 313 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~~~ 372 (443)
++|.|... ..+.++-+|..||+++|+|..... ..+++++.|+.+.+.+|++..+++.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 99998754 467788899999999999977543 56788999999999999999988754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.8e-13 Score=126.94 Aligned_cols=207 Identities=20% Similarity=0.230 Sum_probs=126.7
Q ss_pred cCCCCCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcCcc--cCCcccCCCCCCcEEecccccCCCCCCCcccC--C
Q 035831 137 GLLTDLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRLVG--SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFD--M 210 (443)
Q Consensus 137 ~~l~~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~ 210 (443)
+++.+|+.+.|.+..+..... ....|++++.||||.|-+.. .+-.....+++|+.|+|+.|++..-....... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356677777777776665543 45567777777777776652 22234456777777777777776322222221 2
Q ss_pred CCCEEEccCCcccccCCccc--cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc--cccCCCCCccEE
Q 035831 211 KLDALFLNNNRFSYSIPEKL--GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP--SEIGSLKNLRVF 286 (443)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L 286 (443)
+|+.|.|+.|.++..--..+ ..++++.|++..|............+..|++|||++|++- ..+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 67777777777763222222 3367777777777543343444555677888888887765 233 445667778888
Q ss_pred EeeCCcCCcCC-chh-----ccCCCCCceEEcccccCCccC-chhhcCCCCCCEEEecCCcCCCC
Q 035831 287 DVSSNLFHGNV-PQS-----FSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 287 ~Ls~N~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+++.+.|...- |+. ...+++|++|++++|+|.... -..+..+.+|+.|.+..|++...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88887776422 222 244577888888888875431 13345566777777777777654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=2e-13 Score=125.54 Aligned_cols=230 Identities=19% Similarity=0.200 Sum_probs=126.6
Q ss_pred CcEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCCcCCccC------------CCccCCCCCCEEEccCCcCcccC
Q 035831 116 TVVAGIDLNGNDIAG----SFPAELGLLTDLALFHVNSNRFCGII------------PDFSDWKLMFEFDVSNNRLVGSF 179 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~ 179 (443)
..++.|+|++|.+.. .+...+.+.++|+..++++-- +|.. +++.++++|++||||+|.+.-..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 568999999999864 345557778889988888642 2211 12456678888999988886433
Q ss_pred Cc----ccCCCCCCcEEecccccCCCCCCCcc-------------c-CCCCCEEEccCCcccccCCccccCCccceeeec
Q 035831 180 PR----VVLSWPSLKFLDLRYNNFEGELPCDL-------------F-DMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFA 241 (443)
Q Consensus 180 ~~----~l~~l~~L~~L~L~~n~l~~~~~~~~-------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 241 (443)
+. .+.++..|++|+|.+|.+.-.--..+ . ..+|+++...+|++.......
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~------------ 176 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA------------ 176 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH------------
Confidence 33 34567788888888888762111111 0 124555555555554211111
Q ss_pred cCCCCCccchhhhcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCc----CCchhccCCCCCceEEcc
Q 035831 242 HNNFNGCIPRSIGNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHG----NVPQSFSSLESIQTLILS 313 (443)
Q Consensus 242 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls 313 (443)
+...|...+.|+.+.+..|.|... +...+..+++|++|||.+|.++. .+...+..+++|+.|+++
T Consensus 177 -------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 177 -------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred -------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 223344445555555555555411 22334455556666666665542 122334445556666666
Q ss_pred cccCCccCchhh-----cCCCCCCEEEecCCcCCCCCC----CCCCCCCcCceeeCCCCCC
Q 035831 314 HNQLTGFVSEQI-----CKLPSLSNFTFSYNYFQGLGN----ECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 314 ~N~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~~L~~L~l~~N~l 365 (443)
+|.+......+| ...++|+.+.+.+|.|+.... .++...+.|..|++++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 665554322222 224566666666666654321 2334455566666666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=5.8e-13 Score=120.03 Aligned_cols=208 Identities=18% Similarity=0.157 Sum_probs=131.4
Q ss_pred cCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccccc-CCCCCCCcccC
Q 035831 131 SFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNN-FEGELPCDLFD 209 (443)
Q Consensus 131 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 209 (443)
.++-.+.-+++|+.+.++.+.-..+..-...-+.|+++.+.+..++. .+ .+--...+....-+.-. .+|..-..+..
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecch
Confidence 34444555666777777766544433312223456666665554431 11 11111111111111100 00110000100
Q ss_pred -CCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEE
Q 035831 210 -MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFD 287 (443)
Q Consensus 210 -~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 287 (443)
..|+++||++|.|+ .+.+.... +.++.|++++|.+... +.+..+.+|+.|||++|.++ .+..+-..+.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 15777888888877 55555544 6788888888888743 34888999999999999998 5555666788999999
Q ss_pred eeCCcCCcCCchhccCCCCCceEEcccccCCccC-chhhcCCCCCCEEEecCCcCCCCCC
Q 035831 288 VSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGLGN 346 (443)
Q Consensus 288 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~ 346 (443)
|++|.|.. -..++++-+|..||+++|+|.... ...+++++.|+.+.|.+|.+.+++.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99999973 346788889999999999997542 3568899999999999999988643
No 32
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.20 E-value=1.9e-12 Score=129.11 Aligned_cols=241 Identities=21% Similarity=0.189 Sum_probs=140.2
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
..+..+++..|.|.. +-..+..+++|+.|++.+|+|..+...+..+.+|++|++++|.|+... .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 445555666666653 233466667777777777777666544666777777777777776332 34555567777777
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCc-cccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPE-KLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
+|.|. .+...-....|+.+++++|++...-.. .-...+++.+++.+|.+... ..+..+..+..+++..|.++..
T Consensus 149 ~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~-- 223 (414)
T KOG0531|consen 149 GNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL-- 223 (414)
T ss_pred cCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec--
Confidence 77776 444333334677777777776622221 23445666777777766532 2233344455557777776621
Q ss_pred cccCCCCC--ccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCC---CCC-
Q 035831 275 SEIGSLKN--LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG---NEC- 348 (443)
Q Consensus 275 ~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~~- 348 (443)
..+..+.. |+.+++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+....|.+.... ...
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence 11222232 677777777776 3335566667777777777777644 23445555666666666665321 111
Q ss_pred CCCCCcCceeeCCCCCCCC
Q 035831 349 IPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 349 ~~~~~~L~~L~l~~N~l~~ 367 (443)
....+.+..+.+.+|.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccCcccc
Confidence 3445566677777776655
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=4.8e-11 Score=124.49 Aligned_cols=107 Identities=27% Similarity=0.452 Sum_probs=75.5
Q ss_pred CceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecC
Q 035831 259 LNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSY 338 (443)
Q Consensus 259 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 338 (443)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCCCCCCCCCCCC-CcCceeeCCCCCC
Q 035831 339 NYFQGLGNECIPGS-KVNSAFDDASNCL 365 (443)
Q Consensus 339 N~l~~~~~~~~~~~-~~L~~L~l~~N~l 365 (443)
|++++.+|..+... ..+..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 77777776665442 3455666666653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.2e-11 Score=106.60 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=36.4
Q ss_pred ccceeeeccCCCCCccchhhh-cCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhc-cCCCCCceEE
Q 035831 234 TVSVVTFAHNNFNGCIPRSIG-NMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSF-SSLESIQTLI 311 (443)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 311 (443)
.+++|+|.+|.|... +.++ .+.+|+.|++++|.|+. + +.+..++.|+.|++++|+|+. +...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 344444444444422 2233 35566666666666662 2 245556666666666666663 33233 3456666666
Q ss_pred cccccCCccC-chhhcCCCCCCEEEecCCcCCCCCC---CCCCCCCcCceee
Q 035831 312 LSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGLGN---ECIPGSKVNSAFD 359 (443)
Q Consensus 312 Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~L~~L~ 359 (443)
+++|+|.... -..+..+++|+.|++.+|.++...- ..+..+++|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666665432 1345566666666666666654321 1223455555554
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-12 Score=127.84 Aligned_cols=239 Identities=21% Similarity=0.187 Sum_probs=169.1
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRY 196 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 196 (443)
.++.++...+.+...--. ...+..++.+++..|.|..+...+..+++|+.|++.+|+|..+ ...+..+++|++|++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSF 127 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccc
Confidence 345555555544322111 1566778888899999988555688999999999999999843 33377889999999999
Q ss_pred ccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccc-hhhhcCCcCceeeccCcccCccCcc
Q 035831 197 NNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIP-RSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 197 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
|.|+ .+...-....|+.|++++|.|+ .+...-....++.+++++|++...-. . ...+.+++.+++.+|.+. ...
T Consensus 128 N~I~-~i~~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~ 202 (414)
T KOG0531|consen 128 NKIT-KLEGLSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIE 202 (414)
T ss_pred cccc-cccchhhccchhhheeccCcch-hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh--ccc
Confidence 9998 5544333346999999999997 44444446778889999998875443 2 467788899999999887 334
Q ss_pred ccCCCCCccEEEeeCCcCCcCCchhccCCCC--CceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCC
Q 035831 276 EIGSLKNLRVFDVSSNLFHGNVPQSFSSLES--IQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSK 353 (443)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 353 (443)
.+..+..+..+++..|.++..-+ +..+.. |+.+++++|.+... +..+..+..+..+++..|++...- .+....
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~ 277 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLP 277 (414)
T ss_pred chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccc
Confidence 45556667777888888873322 222333 88999999998843 255677888888999999887652 244555
Q ss_pred cCceeeCCCCCCCC
Q 035831 354 VNSAFDDASNCLAE 367 (443)
Q Consensus 354 ~L~~L~l~~N~l~~ 367 (443)
.+..+....|.+..
T Consensus 278 ~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 278 KLSELWLNDNKLAL 291 (414)
T ss_pred hHHHhccCcchhcc
Confidence 66666677776653
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.2e-12 Score=117.72 Aligned_cols=211 Identities=18% Similarity=0.146 Sum_probs=152.6
Q ss_pred ccCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEecccccCCCCCCCc---ccC-CCCCEEEccCCcccccCCccc--c
Q 035831 159 FSDWKLMFEFDVSNNRLVGSFP-RVVLSWPSLKFLDLRYNNFEGELPCD---LFD-MKLDALFLNNNRFSYSIPEKL--G 231 (443)
Q Consensus 159 ~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~-~~L~~L~L~~n~l~~~~~~~~--~ 231 (443)
-+++.+|+++.|.++.+..... .....+++++.|||+.|-+.. .-.. ... .+|+.|+|+.|++.-...... .
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3578899999999998873221 356789999999999998772 2111 112 389999999999974333332 2
Q ss_pred CCccceeeeccCCCCCc-cchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCC-chhccCCCCCce
Q 035831 232 RSTVSVVTFAHNNFNGC-IPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV-PQSFSSLESIQT 309 (443)
Q Consensus 232 ~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~ 309 (443)
...++.|.++.|.++.. +...+..+++|+.|+|..|............+..|+.|||++|++.+.. -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 36799999999999743 3334567899999999999633233444556788999999999987432 134677899999
Q ss_pred EEcccccCCccC-chh-----hcCCCCCCEEEecCCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCcc
Q 035831 310 LILSHNQLTGFV-SEQ-----ICKLPSLSNFTFSYNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 310 L~Ls~N~l~~~~-~~~-----l~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
|+++.+.|.++- ++. ...+++|++|+++.|+|..... ..+..+++|+.+....|.|..-.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 999999988642 222 3567899999999999976532 345566778888888888865433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6.3e-11 Score=102.21 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=46.4
Q ss_pred hhcCCcCceeeccCcccCccCccccC-CCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCC
Q 035831 253 IGNMQNLNEIILSDNKLSGCFPSEIG-SLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSL 331 (443)
Q Consensus 253 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 331 (443)
+.+..++++|+|++|.|+ .+ +.++ .+.+|+.|++++|.|+. + +.+..++.|+.|++++|+|+.+.......+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 445567899999999998 33 4565 57899999999999994 3 358889999999999999996643323468999
Q ss_pred CEEEecCCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCcc
Q 035831 332 SNFTFSYNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 332 ~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
++|++++|+|..... ..+..+++|+.|++.+|+++..+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 999999999988644 456778999999999999986544
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.98 E-value=7.1e-12 Score=125.01 Aligned_cols=134 Identities=25% Similarity=0.295 Sum_probs=97.3
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchh-ccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS-FSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ 311 (443)
..|...+.+.|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||++|.++ .+|.. ..++ +|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 44666666666665 5556777778889999999988843 37778888999999999888 44432 2333 488999
Q ss_pred cccccCCccCchhhcCCCCCCEEEecCCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCccccc
Q 035831 312 LSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 312 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
+++|.++.. ..+.++.+|+.||+++|-|.+... ..+..+..|+.|+|.||++.+-|.++.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRa 299 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRA 299 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHH
Confidence 999988855 456788889999999998876532 223455677888899999888776543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.3e-10 Score=78.36 Aligned_cols=59 Identities=37% Similarity=0.532 Sum_probs=29.4
Q ss_pred CccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCc
Q 035831 282 NLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNY 340 (443)
Q Consensus 282 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 340 (443)
+|++|++++|+++...+..|.++++|++|++++|.|+.+.++.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544334444555555555555555554444455555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.2e-09 Score=77.48 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=58.1
Q ss_pred CCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCC
Q 035831 305 ESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 305 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l 365 (443)
++|++|++++|+|+.+.++.|.++++|++|++++|.++.+.+.+|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988889999999999999999999999999999999999999999986
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-10 Score=107.00 Aligned_cols=224 Identities=20% Similarity=0.253 Sum_probs=148.1
Q ss_pred hhhcCCCCCCEEEccCCcCCccCC-----CccCCCCCCEEEccCCc---CcccCCc-------ccCCCCCCcEEeccccc
Q 035831 134 AELGLLTDLALFHVNSNRFCGIIP-----DFSDWKLMFEFDVSNNR---LVGSFPR-------VVLSWPSLKFLDLRYNN 198 (443)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~L~~n~ 198 (443)
..+..+..++.++|++|.+..... .+.+.++|+..++++-- ....+|. ++...++|++||||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345667788888888888765322 45667788888877532 2222332 34455677888888887
Q ss_pred CCCCCCCcccC-----CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc-
Q 035831 199 FEGELPCDLFD-----MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC- 272 (443)
Q Consensus 199 l~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~- 272 (443)
+....+..+.. ..|++|.|.+|.+....-..++ ..|..|. .+ ...+.-+.|+++..++|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VN-------KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence 76544444332 1555566655555411111110 0111111 11 1123346899999999998732
Q ss_pred ---CccccCCCCCccEEEeeCCcCCc----CCchhccCCCCCceEEcccccCCcc----CchhhcCCCCCCEEEecCCcC
Q 035831 273 ---FPSEIGSLKNLRVFDVSSNLFHG----NVPQSFSSLESIQTLILSHNQLTGF----VSEQICKLPSLSNFTFSYNYF 341 (443)
Q Consensus 273 ---~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l 341 (443)
+...|...+.|+.+.+..|.|.. .+...|..+++|+.|||.+|.++.. +...+..+++|+.|+++++.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 33456777899999999999863 2345678899999999999999743 356778889999999999999
Q ss_pred CCCCCCCC-----CCCCcCceeeCCCCCCCC
Q 035831 342 QGLGNECI-----PGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 342 ~~~~~~~~-----~~~~~L~~L~l~~N~l~~ 367 (443)
...+...+ ...+.|+.+.+.+|.|+.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 88766443 346899999999999875
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.1e-09 Score=112.06 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=81.8
Q ss_pred CCCcEEEEEcCCCC--CcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 035831 114 NITVVAGIDLNGND--IAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLK 190 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 190 (443)
..+.+++|-+.+|. +.......|..++.|++|||++|.-.+..| .++.+-+|++|++++..+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 44568888888886 554445557788999999999876655555 8888899999999999988 8888899999999
Q ss_pred EEecccccCCCCCCCcccCC-CCCEEEccCCc
Q 035831 191 FLDLRYNNFEGELPCDLFDM-KLDALFLNNNR 221 (443)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 221 (443)
+|++..+.....++.....+ +|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99998887665555555533 88888876654
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=1.1e-08 Score=91.48 Aligned_cols=234 Identities=17% Similarity=0.172 Sum_probs=126.8
Q ss_pred CcEEEEEcCCCCCccc----CchhhcCCCCCCEEEccCCcCCcc-----------CCCccCCCCCCEEEccCCcCcccCC
Q 035831 116 TVVAGIDLNGNDIAGS----FPAELGLLTDLALFHVNSNRFCGI-----------IPDFSDWKLMFEFDVSNNRLVGSFP 180 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~ 180 (443)
..++.+|||+|.|... +...+.+-.+|+..++++-...-. .+++.+|++|+..+||+|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4578999999999754 344566678888888876432211 1235678888888888888875555
Q ss_pred cc----cCCCCCCcEEecccccCCCCCCCccc--------------CCCCCEEEccCCcccccCCccccCCccceeeecc
Q 035831 181 RV----VLSWPSLKFLDLRYNNFEGELPCDLF--------------DMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAH 242 (443)
Q Consensus 181 ~~----l~~l~~L~~L~L~~n~l~~~~~~~~~--------------~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~ 242 (443)
.. +.+-+.|++|.|++|.+.-.--..++ .+.|+++....|++. ..+...
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~------------ 176 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKEL------------ 176 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHH------------
Confidence 43 45567788888888877621111111 124555555555554 111111
Q ss_pred CCCCCccchhhhcCCcCceeeccCcccCccC-----ccccCCCCCccEEEeeCCcCCcC----CchhccCCCCCceEEcc
Q 035831 243 NNFNGCIPRSIGNMQNLNEIILSDNKLSGCF-----PSEIGSLKNLRVFDVSSNLFHGN----VPQSFSSLESIQTLILS 313 (443)
Q Consensus 243 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls 313 (443)
....+..-..|+++.+..|.|...- -..+..+.+|+.|||..|.++.. +...+...+.|+.|.+.
T Consensus 177 ------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 177 ------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred ------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 0111222235555555555554211 11122345666666666655521 12233344556666666
Q ss_pred cccCCccCchhh------cCCCCCCEEEecCCcCCCCCCCC-----C--CCCCcCceeeCCCCCCCCC
Q 035831 314 HNQLTGFVSEQI------CKLPSLSNFTFSYNYFQGLGNEC-----I--PGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 314 ~N~l~~~~~~~l------~~l~~L~~L~Ls~N~l~~~~~~~-----~--~~~~~L~~L~l~~N~l~~~ 368 (443)
+|.++.....++ ...++|..|-..+|.+.+.+-.. + ..++-|..+.+.+|.|...
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 666654332221 12456666666666655432211 1 2345566677777777654
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=7.4e-08 Score=103.25 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=112.0
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCc--CCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNR--FCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLK 190 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 190 (443)
+...++++.+-+|.+. .++.... .++|++|-+.+|. +..+.. .|..++.|++|||++|.--+.+|..++++-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4466788888888876 3444333 3379999999997 555554 588899999999999887779999999999999
Q ss_pred EEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCcccc-CCccceeeeccCCC--CCccchhhhcCCcCceeecc
Q 035831 191 FLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLG-RSTVSVVTFAHNNF--NGCIPRSIGNMQNLNEIILS 265 (443)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~Ls 265 (443)
+|+++++.+. .+|..+..+ .|.+|++..+.....++.... ..+|++|.+..-.. ....-..+.++.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999999999 999999987 999999998887656655555 57888888876542 22223344555555555443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=1.6e-09 Score=108.62 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc-ccCCCCCccEEE
Q 035831 210 MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS-EIGSLKNLRVFD 287 (443)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ 287 (443)
..|...+.++|.+. .+...+.. +.++.|+|++|+++... .+..+++|++|||++|.+. .+|. ...++ +|+.|+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 35556666666665 33333332 45666666666666432 5666777777777777776 3332 12222 377777
Q ss_pred eeCCcCCcCCchhccCCCCCceEEcccccCCccC-chhhcCCCCCCEEEecCCcCCC
Q 035831 288 VSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQG 343 (443)
Q Consensus 288 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~ 343 (443)
+++|.++.. ..+.++.+|+.||+++|-|.+.- -..+..+..|+.|.|.+|.+-.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777776622 24556667777777777665431 1223445566677777776643
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.2e-08 Score=79.73 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=41.4
Q ss_pred cceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEccc
Q 035831 235 VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSH 314 (443)
Q Consensus 235 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 314 (443)
|+..+|++|.+....+..-.+.+.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 444444444444322222233345555555555555 45555555555555555555555 4444444455555555555
Q ss_pred ccCCc
Q 035831 315 NQLTG 319 (443)
Q Consensus 315 N~l~~ 319 (443)
|.+..
T Consensus 133 na~~e 137 (177)
T KOG4579|consen 133 NARAE 137 (177)
T ss_pred Ccccc
Confidence 55543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=8.5e-08 Score=77.32 Aligned_cols=90 Identities=21% Similarity=0.334 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELG-LLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
.+|+.++|++|.+. .+|..|. .++.++.|++++|+|..++..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34666777777776 3444443 344667777777777766666666777777777777766 55555666666666666
Q ss_pred ccccCCCCCCCccc
Q 035831 195 RYNNFEGELPCDLF 208 (443)
Q Consensus 195 ~~n~l~~~~~~~~~ 208 (443)
.+|.+. .++..++
T Consensus 131 ~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 131 PENARA-EIDVDLF 143 (177)
T ss_pred CCCccc-cCcHHHh
Confidence 666665 5554443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.8e-09 Score=93.01 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCEEEccCCcCcc-cCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccc---cCCccceee
Q 035831 165 MFEFDVSNNRLVG-SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKL---GRSTVSVVT 239 (443)
Q Consensus 165 L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~ 239 (443)
|++||||+..|+. .+-..+..+.+|+.|.|.++++...+...+..- +|+.|+++.+.=-....... ....|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555554431 111223444555555555555544443333332 55555555432110111000 113455555
Q ss_pred eccCCCCCccch-hhhcC-CcCceeeccCcccC---ccCccccCCCCCccEEEeeCCc-CCcCCchhccCCCCCceEEcc
Q 035831 240 FAHNNFNGCIPR-SIGNM-QNLNEIILSDNKLS---GCFPSEIGSLKNLRVFDVSSNL-FHGNVPQSFSSLESIQTLILS 313 (443)
Q Consensus 240 L~~n~l~~~~~~-~l~~l-~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls 313 (443)
++.|.+...... .+... .+|..|+|++.+-. ..+..-...+++|.+|||++|. ++......|.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 555554322211 11111 45555666554211 0111122345666666666543 332233344555666666666
Q ss_pred cccCCccCch---hhcCCCCCCEEEecCC
Q 035831 314 HNQLTGFVSE---QICKLPSLSNFTFSYN 339 (443)
Q Consensus 314 ~N~l~~~~~~---~l~~l~~L~~L~Ls~N 339 (443)
.|.. ++|+ .+...++|.+||+.+.
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6542 2333 2345566666665544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.7e-07 Score=85.18 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCcCCccCCCc-cCCCCCCEEEccCCcCcc-cCCcccCCCCCCcE
Q 035831 116 TVVAGIDLNGNDIAG--SFPAELGLLTDLALFHVNSNRFCGIIPDF-SDWKLMFEFDVSNNRLVG-SFPRVVLSWPSLKF 191 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~ 191 (443)
++++++||.+|.|+. .+..-+.+++.|++|+|+.|.+...+..+ ....+|+.|-|.+..+.. .....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 456667777776653 23334556677777777777666555533 355666666666666542 22233455666666
Q ss_pred EecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCc--cchhhhcCCcCceeeccCccc
Q 035831 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGC--IPRSIGNMQNLNEIILSDNKL 269 (443)
Q Consensus 192 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l 269 (443)
|+++.|.+. .+++..|.+.. ..+.+++|.+..|..... ....-.-++++..+-+..|.+
T Consensus 151 lHmS~N~~r-------------q~n~Dd~c~e~------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl 211 (418)
T KOG2982|consen 151 LHMSDNSLR-------------QLNLDDNCIED------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL 211 (418)
T ss_pred hhhccchhh-------------hhccccccccc------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc
Confidence 666666433 11122222211 001222332222221100 000011224555555555555
Q ss_pred CccC-ccccCCCCCccEEEeeCCcCCcC-CchhccCCCCCceEEcccccCCccCch------hhcCCCCCCEEE
Q 035831 270 SGCF-PSEIGSLKNLRVFDVSSNLFHGN-VPQSFSSLESIQTLILSHNQLTGFVSE------QICKLPSLSNFT 335 (443)
Q Consensus 270 ~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~------~l~~l~~L~~L~ 335 (443)
.... -..+..++.+..|+|+.|+|..- .-+++.++++|..|.+++|.+.+.... .++.+++++.|+
T Consensus 212 K~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 212 KTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 4221 12333445555666666666531 234455666667777777666532211 234455555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.2e-07 Score=86.15 Aligned_cols=204 Identities=14% Similarity=0.128 Sum_probs=104.3
Q ss_pred CCCCCEEEccCCcCcc--cCCcccCCCCCCcEEecccccCCCCCCCc-ccCCCCCEEEccCCcccccCCcccc--CCccc
Q 035831 162 WKLMFEFDVSNNRLVG--SFPRVVLSWPSLKFLDLRYNNFEGELPCD-LFDMKLDALFLNNNRFSYSIPEKLG--RSTVS 236 (443)
Q Consensus 162 l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~--~~~L~ 236 (443)
++.++++||.+|.|+. .+...+.+++.|++|+|+.|++...+... +-..+|+.|.|.+..+...-...+. .+.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555555542 22223445556666666666555333222 1112555555555555432222221 14455
Q ss_pred eeeeccCCCCCc--cchhhhcC-CcCceeeccCcccCc--cCccccCCCCCccEEEeeCCcCCcC-CchhccCCCCCceE
Q 035831 237 VVTFAHNNFNGC--IPRSIGNM-QNLNEIILSDNKLSG--CFPSEIGSLKNLRVFDVSSNLFHGN-VPQSFSSLESIQTL 310 (443)
Q Consensus 237 ~L~L~~n~l~~~--~~~~l~~l-~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L 310 (443)
+|.++.|.+... ........ +.+++|++-.|.... ..-.--.-++++..+.+..|.+... .-..+..++.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 555555533211 00111111 233344433332210 0000012246777788888877642 23345566778889
Q ss_pred EcccccCCccC-chhhcCCCCCCEEEecCCcCCCCCCC------CCCCCCcCceeeCCCCCCCC
Q 035831 311 ILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGLGNE------CIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 311 ~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~------~~~~~~~L~~L~l~~N~l~~ 367 (443)
+|+.|+|.+.. -+++.+++.|..|.+++|.+...... .++.+++++.|+=+ .|+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 99999997643 36788899999999999988654322 23455666666533 5554
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.8e-08 Score=91.40 Aligned_cols=191 Identities=15% Similarity=0.069 Sum_probs=104.3
Q ss_pred CCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccccc-CCCCCCCcccC--CCCCEE
Q 035831 141 DLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNN-FEGELPCDLFD--MKLDAL 215 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~--~~L~~L 215 (443)
.|++|||+...|+...- -++.+.+|+.|.|.++++.+.+...+.+..+|+.|+|+.+. ++...-..+.. ..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555555543221 34455556666666666555555555555566666665542 22111111111 145555
Q ss_pred EccCCcccccCCccc-c--CCccceeeeccCCC---CCccchhhhcCCcCceeeccCcc-cCccCccccCCCCCccEEEe
Q 035831 216 FLNNNRFSYSIPEKL-G--RSTVSVVTFAHNNF---NGCIPRSIGNMQNLNEIILSDNK-LSGCFPSEIGSLKNLRVFDV 288 (443)
Q Consensus 216 ~L~~n~l~~~~~~~~-~--~~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L 288 (443)
+++.+.+....-... . ..+++.|+++++.- ...+.--...+++|.+|||++|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 665555543221111 1 14566666666532 11222234578899999999874 44444456677889999999
Q ss_pred eCCcCCcCCchh---ccCCCCCceEEcccccCCccCchhhcCCCCCCE
Q 035831 289 SSNLFHGNVPQS---FSSLESIQTLILSHNQLTGFVSEQICKLPSLSN 333 (443)
Q Consensus 289 s~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 333 (443)
+.+.. .+|.. +...++|.+|++.++--.+...-....+++|+.
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 98874 45554 456688999998876544332223344566553
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=8.5e-07 Score=79.67 Aligned_cols=222 Identities=19% Similarity=0.204 Sum_probs=138.3
Q ss_pred hhcCCCCCCEEEccCCcCCccCC-----CccCCCCCCEEEccCCcCc---cc-------CCcccCCCCCCcEEecccccC
Q 035831 135 ELGLLTDLALFHVNSNRFCGIIP-----DFSDWKLMFEFDVSNNRLV---GS-------FPRVVLSWPSLKFLDLRYNNF 199 (443)
Q Consensus 135 ~~~~l~~L~~L~L~~n~i~~~~~-----~~~~l~~L~~L~Ls~n~l~---~~-------~~~~l~~l~~L~~L~L~~n~l 199 (443)
.+..+..++.++||+|.|..... .+.+-.+|+..++++-... .. +-.++.++++|+..+||+|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34557888889999998875433 3556677877777653221 11 223456778888888888888
Q ss_pred CCCCCCcccC-----CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc
Q 035831 200 EGELPCDLFD-----MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 200 ~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
....|..+.. ..|++|.+++|.+.-..-..++. .|.+ |..| .-..+-+.|++.....|++.. .+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk-al~~--la~n-------KKaa~kp~Le~vicgrNRlen-gs 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK-ALFH--LAYN-------KKAADKPKLEVVICGRNRLEN-GS 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH-HHHH--HHHH-------hhhccCCCceEEEeccchhcc-Cc
Confidence 7666654432 25666666666554111111110 0000 0111 112334789999999998862 22
Q ss_pred c-----ccCCCCCccEEEeeCCcCCcCC-----chhccCCCCCceEEcccccCCcc----CchhhcCCCCCCEEEecCCc
Q 035831 275 S-----EIGSLKNLRVFDVSSNLFHGNV-----PQSFSSLESIQTLILSHNQLTGF----VSEQICKLPSLSNFTFSYNY 340 (443)
Q Consensus 275 ~-----~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~ 340 (443)
. .+..-..|+.+.+..|.|...- -..+..+.+|+.|||.+|-++-. ...+++..+.|+.|.+..+-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 2 2333368999999999986321 12234568999999999998743 34566777889999999998
Q ss_pred CCCCCCCCC------CCCCcCceeeCCCCCCCC
Q 035831 341 FQGLGNECI------PGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 341 l~~~~~~~~------~~~~~L~~L~l~~N~l~~ 367 (443)
++..+...+ ...++|..|...+|.+..
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 887654322 134677778888886654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=6.6e-06 Score=53.64 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=18.1
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCCcEEecccccCC
Q 035831 164 LMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFE 200 (443)
Q Consensus 164 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 200 (443)
+|++|++++|+|+ .++..+.++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=9.9e-06 Score=52.82 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=6.6
Q ss_pred hcCCCCCCEEEecCCcC
Q 035831 325 ICKLPSLSNFTFSYNYF 341 (443)
Q Consensus 325 l~~l~~L~~L~Ls~N~l 341 (443)
++++++|+.|++++|+|
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.6e-05 Score=68.69 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=64.2
Q ss_pred CcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccC-chhhcCCCCCCEEE
Q 035831 257 QNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNFT 335 (443)
Q Consensus 257 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~ 335 (443)
.+...+||++|.+. --..|..++.|..|.|++|+|+.+.|.--..+++|+.|.|.+|.|.... -+-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 35566777777765 2234556677777777777777555544444566777777777766432 13355667777777
Q ss_pred ecCCcCCCCCC---CCCCCCCcCceeeCCC
Q 035831 336 FSYNYFQGLGN---ECIPGSKVNSAFDDAS 362 (443)
Q Consensus 336 Ls~N~l~~~~~---~~~~~~~~L~~L~l~~ 362 (443)
+-+|.++...- ..+..+++|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777765432 2345667777777654
No 56
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.91 E-value=1.6e-05 Score=51.60 Aligned_cols=40 Identities=40% Similarity=0.739 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCC--CCCCcccceecC
Q 035831 68 KKAYVALQAFKKSIYSDPFNTTANWVDN--TDVCSYNGVFCA 107 (443)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~gv~c~ 107 (443)
.++..+|++||+.+..++...+.+|... .++|+|.||+|.
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 3578899999999987888999999976 799999999994
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=6.2e-05 Score=73.21 Aligned_cols=136 Identities=15% Similarity=0.222 Sum_probs=84.5
Q ss_pred ccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCC-cccccCCccccCCccce
Q 035831 159 FSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNN-RFSYSIPEKLGRSTVSV 237 (443)
Q Consensus 159 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~L~~ 237 (443)
+..+.++++|++++|.++ .+|. + -.+|+.|.++++.-...+|..+ ..+|++|++++| .+. .+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~-sLP~-----sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS-GLPE-----SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc-cccc-----ccce
Confidence 445688999999999887 5552 2 2369999998854433666544 348999999988 444 4443 4777
Q ss_pred eeeccCCCCC--ccchhhhcCCcCceeeccCcccC--ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcc
Q 035831 238 VTFAHNNFNG--CIPRSIGNMQNLNEIILSDNKLS--GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313 (443)
Q Consensus 238 L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 313 (443)
|++..+.... .+| .+|+.|.+.+++.. ..++.. -..+|++|++++|... ..|..+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7777665431 233 34666766543211 011111 1257888888887765 3444443 578888887
Q ss_pred ccc
Q 035831 314 HNQ 316 (443)
Q Consensus 314 ~N~ 316 (443)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=3.9e-05 Score=66.29 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=84.1
Q ss_pred CceeeccCcccCccCccccCC-CCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEec
Q 035831 259 LNEIILSDNKLSGCFPSEIGS-LKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFS 337 (443)
Q Consensus 259 L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 337 (443)
=++++|.+.++. .+. .++. +.+...+||++|.+.. -..|..++.|..|.+++|+|+.+.|.--.-+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 466777777665 222 2322 3577899999999973 3458889999999999999998887766778899999999
Q ss_pred CCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCcc
Q 035831 338 YNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 338 ~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+|.|..+.. .-+..++.|++|.+-+|+++....
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccC
Confidence 999987653 446788999999999999876543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00013 Score=71.11 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=91.7
Q ss_pred hhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc-cCCCCCCCcccCCCC
Q 035831 134 AELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN-NFEGELPCDLFDMKL 212 (443)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~L 212 (443)
..+..+.+++.|++++|.++.++ .+ -.+|++|+++++.-...+|..+. .+|++|++++| .+. .+|. +|
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----sL 114 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----SV 114 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-----cc
Confidence 34566789999999999888775 22 24699999998554446676553 58999999998 554 5554 57
Q ss_pred CEEEccCCccc--ccCCccccCCccceeeeccCCCC--CccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEe
Q 035831 213 DALFLNNNRFS--YSIPEKLGRSTVSVVTFAHNNFN--GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDV 288 (443)
Q Consensus 213 ~~L~L~~n~l~--~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 288 (443)
+.|++..+... +.+|. +|+.|.+.+++.. ..++..+ -.+|++|++++|... .+|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCcc-----hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 88888776543 13333 4677777543311 1111111 168999999998866 4554443 58999999
Q ss_pred eCCc
Q 035831 289 SSNL 292 (443)
Q Consensus 289 s~N~ 292 (443)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8774
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.00085 Score=54.98 Aligned_cols=117 Identities=13% Similarity=0.236 Sum_probs=59.1
Q ss_pred hhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCC
Q 035831 251 RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330 (443)
Q Consensus 251 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 330 (443)
..|.++.+|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++.+|+.+.+.+ .+.......|..+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466666777777764 454444556667777777777664 5544455566666777777755 444444556667777
Q ss_pred CCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccc
Q 035831 331 LSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 331 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
|+.+++..+ +..+....|... .++.+.+.. .+..++...|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence 777777665 656666667666 777777664 5555555544
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.0011 Score=54.32 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLK 190 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 190 (443)
|.+..+|+.+.+.. .+..+....|.++.+|+.+++.++ +..+.. .|.++.+|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444555555553 344444455555555666655553 444444 555555555555544 33323333444455555
Q ss_pred EEeccc
Q 035831 191 FLDLRY 196 (443)
Q Consensus 191 ~L~L~~ 196 (443)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.0002 Score=75.38 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=70.4
Q ss_pred CCCEEEccCCccc-ccCCccccC--CccceeeeccCCCCCc-cchhhhcCCcCceeeccCcccCccCccccCCCCCccEE
Q 035831 211 KLDALFLNNNRFS-YSIPEKLGR--STVSVVTFAHNNFNGC-IPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVF 286 (443)
Q Consensus 211 ~L~~L~L~~n~l~-~~~~~~~~~--~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 286 (443)
+|++|++++...- ...+..++. +.|+.|.+.+-.+... ......++++|..||+|+.+++. + ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHH
Confidence 6888888775432 111222222 5677777666555322 23344556667777777776662 2 556666666666
Q ss_pred EeeCCcCCc-CCchhccCCCCCceEEcccccCCccC--c----hhhcCCCCCCEEEecCCcCCCC
Q 035831 287 DVSSNLFHG-NVPQSFSSLESIQTLILSHNQLTGFV--S----EQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 287 ~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--~----~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
.+.+=.+.. ..-..+..+++|+.||+|........ . +.-..++.|+.||.|++.+.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 666554442 12223445666666666665443221 1 1112356666666666555543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=0.00017 Score=75.90 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCCcEEecccccCCC-CCCCcccC--CCCCEEEccCCcccccC-Cccc-cCCccceeeeccCCCCCccchhhhcCCcCce
Q 035831 187 PSLKFLDLRYNNFEG-ELPCDLFD--MKLDALFLNNNRFSYSI-PEKL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNE 261 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~-~~~~~~~~--~~L~~L~L~~n~l~~~~-~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 261 (443)
.+|++|++++...-. .-+..++. ++|+.|.+.+-.+...- .... ..++|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 568888887754321 11222233 37888888876654221 1111 227788888888888744 66778888888
Q ss_pred eeccCcccCc-cCccccCCCCCccEEEeeCCcCCcCC--c----hhccCCCCCceEEcccccCCccCchhh-cCCCCCCE
Q 035831 262 IILSDNKLSG-CFPSEIGSLKNLRVFDVSSNLFHGNV--P----QSFSSLESIQTLILSHNQLTGFVSEQI-CKLPSLSN 333 (443)
Q Consensus 262 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p----~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~ 333 (443)
|.+.+=.+.. ..-..+.++++|++||+|..+..... . +.-..++.|+.||.|+..+.+..-+.+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887766652 22234567888888888876654221 1 112346788888888887775543332 33444544
Q ss_pred EE
Q 035831 334 FT 335 (443)
Q Consensus 334 L~ 335 (443)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00032 Score=63.19 Aligned_cols=98 Identities=21% Similarity=0.338 Sum_probs=49.2
Q ss_pred ccceeeeccCCCCCccchhhhcCCcCceeeccCc--ccCccCccccCCCCCccEEEeeCCcCCcCCchh---ccCCCCCc
Q 035831 234 TVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDN--KLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS---FSSLESIQ 308 (443)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~ 308 (443)
.++.+.+.+..++.. ..|-.+++|+.|.++.| ++.+.+......+++|++|++++|+|+. ++. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 344444555444422 22445566666666666 4444444334445666666666666652 222 23344555
Q ss_pred eEEcccccCCccC---chhhcCCCCCCEEE
Q 035831 309 TLILSHNQLTGFV---SEQICKLPSLSNFT 335 (443)
Q Consensus 309 ~L~Ls~N~l~~~~---~~~l~~l~~L~~L~ 335 (443)
.|++.+|..+... -..|.-+++|++||
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6666666554321 12344445555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.0004 Score=62.58 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCC--cCCccCC-CccCCCCCCEEEccCCcCcccCCc---ccCCCCCCc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSN--RFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPR---VVLSWPSLK 190 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~ 190 (443)
.++.+++.+..++.. ..|-.+++|++|.++.| ++.+-.. -...+++|++|++++|+|.. .. .+..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 344444555444421 23445566666666666 3333332 33344666666666666652 22 234455566
Q ss_pred EEecccccCC
Q 035831 191 FLDLRYNNFE 200 (443)
Q Consensus 191 ~L~L~~n~l~ 200 (443)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666666655
No 66
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.83 E-value=0.0023 Score=65.36 Aligned_cols=15 Identities=20% Similarity=-0.009 Sum_probs=6.2
Q ss_pred ccChHHHHHHHHhhh
Q 035831 24 ALSDAEAAFITRRQL 38 (443)
Q Consensus 24 ~~~~~~~~~~~~l~~ 38 (443)
+++.+++..+-.+..
T Consensus 82 ~ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMG 96 (1102)
T ss_pred hccHHHHHHHHHHHh
Confidence 344444444443333
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00012 Score=66.30 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=35.9
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCC-chhccCCCCCceEEccc
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV-PQSFSSLESIQTLILSH 314 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~ 314 (443)
+.|+.-++.+.++ ....+|+.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.+.. -.-+.++++|+.|.|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444444444322 1233455555555555555521 22444555555555555554211 11234445555555555
Q ss_pred ccCCc
Q 035831 315 NQLTG 319 (443)
Q Consensus 315 N~l~~ 319 (443)
|.-.+
T Consensus 98 NPCc~ 102 (388)
T KOG2123|consen 98 NPCCG 102 (388)
T ss_pred CCccc
Confidence 54443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=8.1e-05 Score=67.46 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccC-chhhcCCCCCCEE
Q 035831 256 MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNF 334 (443)
Q Consensus 256 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L 334 (443)
+.+.+.|+.-++.++++ .....++.|++|.|+-|+|+..- .+..+++|++|+|..|.|.++. -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 56778899999999843 34567899999999999998443 4788999999999999998653 2457889999999
Q ss_pred EecCCcCCCCCCC-----CCCCCCcCceee
Q 035831 335 TFSYNYFQGLGNE-----CIPGSKVNSAFD 359 (443)
Q Consensus 335 ~Ls~N~l~~~~~~-----~~~~~~~L~~L~ 359 (443)
.|..|.-.+..+. .+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988877553 344567777775
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.67 E-value=7.5e-05 Score=75.12 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=98.8
Q ss_pred CCCCEEEccCCcCcccC----CcccCCCCCCcEEecccccCCCCCCCcccC------CCCCEEEccCCcccccCCccc--
Q 035831 163 KLMFEFDVSNNRLVGSF----PRVVLSWPSLKFLDLRYNNFEGELPCDLFD------MKLDALFLNNNRFSYSIPEKL-- 230 (443)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~L~~n~l~~~~~~~~-- 230 (443)
..+..|.|.+|.+.... ...+..+..|+.|++++|.+.+..-..+.. ..+++|++..|.++......+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34788899999887433 334566788999999999887432222211 246667777777664433222
Q ss_pred --c-CCccceeeeccCCCCCc----cchhhh----cCCcCceeeccCcccCcc----CccccCCCCC-ccEEEeeCCcCC
Q 035831 231 --G-RSTVSVVTFAHNNFNGC----IPRSIG----NMQNLNEIILSDNKLSGC----FPSEIGSLKN-LRVFDVSSNLFH 294 (443)
Q Consensus 231 --~-~~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~-L~~L~Ls~N~l~ 294 (443)
. ...++.++++.|.+... ++..+. ...++++|.+.+|.++.. +...+...+. +..|++.+|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 1 24466666666665311 222222 355666666666665521 1122333333 555666666665
Q ss_pred cC----CchhccCC-CCCceEEcccccCCccC----chhhcCCCCCCEEEecCCcCCCC
Q 035831 295 GN----VPQSFSSL-ESIQTLILSHNQLTGFV----SEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 295 ~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+. ....+..+ ..++.++++.|.|++.. ...+...+.++.+.+++|.+...
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 32 12223333 45566666666665432 23344455666666666666543
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.53 E-value=5.3e-05 Score=76.22 Aligned_cols=201 Identities=20% Similarity=0.205 Sum_probs=134.4
Q ss_pred CCCEEEccCCcCCccCC-----CccCCCCCCEEEccCCcCcccCCc----ccCCC-CCCcEEecccccCCCCCCCccc--
Q 035831 141 DLALFHVNSNRFCGIIP-----DFSDWKLMFEFDVSNNRLVGSFPR----VVLSW-PSLKFLDLRYNNFEGELPCDLF-- 208 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~----~l~~l-~~L~~L~L~~n~l~~~~~~~~~-- 208 (443)
.+..|.|.+|.+..... .+.....|+.|++++|.+.+.... .+... ..|++|++..|.++...-..+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37889999999876533 467788999999999999743222 23333 5678899999988854433322
Q ss_pred --C-CCCCEEEccCCccccc----CCcccc-----CCccceeeeccCCCCCc----cchhhhcCCc-CceeeccCcccCc
Q 035831 209 --D-MKLDALFLNNNRFSYS----IPEKLG-----RSTVSVVTFAHNNFNGC----IPRSIGNMQN-LNEIILSDNKLSG 271 (443)
Q Consensus 209 --~-~~L~~L~L~~n~l~~~----~~~~~~-----~~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~l~~ 271 (443)
. ..++.++++.|.+... ++..+. ..++++|.+++|.++.. +...+...+. +.+|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 2 3788999999988421 111221 25688999999998743 2233444555 7779999999874
Q ss_pred c----CccccCCC-CCccEEEeeCCcCCcCC----chhccCCCCCceEEcccccCCccCc----hhhcCCCCCCEEEecC
Q 035831 272 C----FPSEIGSL-KNLRVFDVSSNLFHGNV----PQSFSSLESIQTLILSHNQLTGFVS----EQICKLPSLSNFTFSY 338 (443)
Q Consensus 272 ~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~Ls~ 338 (443)
. ....+..+ ..+++++++.|.|++.- ...+.....++++.+++|.+..... ..+.....+.++-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 4 23344455 67899999999998643 3445567799999999999975422 2233344555566665
Q ss_pred CcC
Q 035831 339 NYF 341 (443)
Q Consensus 339 N~l 341 (443)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.0095 Score=32.26 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=5.5
Q ss_pred CCEEEccCCcCc
Q 035831 165 MFEFDVSNNRLV 176 (443)
Q Consensus 165 L~~L~Ls~n~l~ 176 (443)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.80 E-value=0.013 Score=31.67 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.3
Q ss_pred EEEeeCCcC
Q 035831 285 VFDVSSNLF 293 (443)
Q Consensus 285 ~L~Ls~N~l 293 (443)
+|||++|+|
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.00079 Score=59.64 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
.+.+++.||++.|++. .+-..|+.++.|..|+++.|++...+..+.....++.+++.+|..+ ..|.++...+++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4577888999888887 4455677888888888888888877778888888888888888887 7888888888888888
Q ss_pred cccccCC
Q 035831 194 LRYNNFE 200 (443)
Q Consensus 194 L~~n~l~ 200 (443)
+.+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888765
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.37 E-value=0.0015 Score=62.71 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCCccc--CchhhcCCCCCCEEEccCCcCCccCC--Cc-cCCCCCCEEEccCC-cCcccCCc-ccCCCCC
Q 035831 116 TVVAGIDLNGNDIAGS--FPAELGLLTDLALFHVNSNRFCGIIP--DF-SDWKLMFEFDVSNN-RLVGSFPR-VVLSWPS 188 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~--~~-~~l~~L~~L~Ls~n-~l~~~~~~-~l~~l~~ 188 (443)
..+++|.+.++.=.+. +-..-.+++++++|.+.++....... .+ ..+.+|++|+|..+ .|+...-+ ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4578888888764432 22334668888888888886322211 22 35778888888874 34432222 3346788
Q ss_pred CcEEeccccc
Q 035831 189 LKFLDLRYNN 198 (443)
Q Consensus 189 L~~L~L~~n~ 198 (443)
|++|+++.+.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888888774
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.11 E-value=0.0017 Score=57.59 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=77.8
Q ss_pred CchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-
Q 035831 132 FPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM- 210 (443)
Q Consensus 132 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~- 210 (443)
...++......+.||++.|++......|+.++.|..||++.|++. ..|..+.++..++.+++..|... ..|.+....
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 345677788999999999999888778888999999999999998 78889999999999999999988 888887775
Q ss_pred CCCEEEccCCccc
Q 035831 211 KLDALFLNNNRFS 223 (443)
Q Consensus 211 ~L~~L~L~~n~l~ 223 (443)
+++++++..|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888765
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.29 E-value=0.089 Score=26.42 Aligned_cols=11 Identities=55% Similarity=0.803 Sum_probs=3.4
Q ss_pred CCEEEccCCcC
Q 035831 165 MFEFDVSNNRL 175 (443)
Q Consensus 165 L~~L~Ls~n~l 175 (443)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.18 E-value=0.011 Score=59.98 Aligned_cols=13 Identities=38% Similarity=0.250 Sum_probs=6.7
Q ss_pred CCCCcEEeccccc
Q 035831 186 WPSLKFLDLRYNN 198 (443)
Q Consensus 186 l~~L~~L~L~~n~ 198 (443)
+.+|+.|+++++.
T Consensus 242 ~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 242 CRKLKSLDLSGCG 254 (482)
T ss_pred cCCcCccchhhhh
Confidence 3455555555554
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.06 E-value=0.014 Score=59.35 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCCCEEEccCCcCccc--CCcccCCCCCCcEEecccc-cCCCCCC---CcccC--CCCCEEEccCCc-ccccCCcccc-
Q 035831 162 WKLMFEFDVSNNRLVGS--FPRVVLSWPSLKFLDLRYN-NFEGELP---CDLFD--MKLDALFLNNNR-FSYSIPEKLG- 231 (443)
Q Consensus 162 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~~~--~~L~~L~L~~n~-l~~~~~~~~~- 231 (443)
++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ ..+.. .+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45556665555432212 2233445566666666652 1110111 00111 256666666665 3322222222
Q ss_pred -CCccceeeeccCC-CCCcc-chhhhcCCcCceeeccCccc
Q 035831 232 -RSTVSVVTFAHNN-FNGCI-PRSIGNMQNLNEIILSDNKL 269 (443)
Q Consensus 232 -~~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~Ls~n~l 269 (443)
...|++|.+.++. +++.. -.....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2456666655555 33322 22233455666666665543
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.62 E-value=0.0087 Score=57.58 Aligned_cols=249 Identities=14% Similarity=0.059 Sum_probs=138.4
Q ss_pred CCCCcEEEEEcCCCC-CcccCchhh-cCCCCCCEEEccCC-cCCccCC--CccCCCCCCEEEccCCc-Cccc-CCcccCC
Q 035831 113 PNITVVAGIDLNGND-IAGSFPAEL-GLLTDLALFHVNSN-RFCGIIP--DFSDWKLMFEFDVSNNR-LVGS-FPRVVLS 185 (443)
Q Consensus 113 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~--~~~~l~~L~~L~Ls~n~-l~~~-~~~~l~~ 185 (443)
.+.+++++|++.++. +++..-..+ ..+.+|++|++..+ .++...- -..++++|++|+++.+. |++. +-..+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 367788888888875 232222223 35788999999884 3443322 23578899999999874 3331 1223455
Q ss_pred CCCCcEEecccccCCCCCCCcccC-----CCCCEEEccCCcc-cccCC--ccccCCccceeeeccCCCCC-ccchh-hhc
Q 035831 186 WPSLKFLDLRYNNFEGELPCDLFD-----MKLDALFLNNNRF-SYSIP--EKLGRSTVSVVTFAHNNFNG-CIPRS-IGN 255 (443)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l-~~~~~--~~~~~~~L~~L~L~~n~l~~-~~~~~-l~~ 255 (443)
+..++.+.+.+|.=. --+.+.. ..+..+++..+.. +.+.- ...+...++.|+.+++.-.+ ..-.. ..+
T Consensus 241 ~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 666777766654311 1111111 1344555545432 21110 01123557788877765422 22222 345
Q ss_pred CCcCceeeccCcc-cCccCcccc-CCCCCccEEEeeCCcCCc--CCchhccCCCCCceEEcccccCC-ccC----chhhc
Q 035831 256 MQNLNEIILSDNK-LSGCFPSEI-GSLKNLRVFDVSSNLFHG--NVPQSFSSLESIQTLILSHNQLT-GFV----SEQIC 326 (443)
Q Consensus 256 l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~-~~~----~~~l~ 326 (443)
..+|+.|.++.++ ++..-...+ .+...|+.+++....... .+...-.+++.|++|.++++... +.. ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 6788888888875 332211222 245778888888775431 12222345678888888888643 221 12224
Q ss_pred CCCCCCEEEecCCcC-CCCCCCCCCCCCcCceeeCCCC
Q 035831 327 KLPSLSNFTFSYNYF-QGLGNECIPGSKVNSAFDDASN 363 (443)
Q Consensus 327 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~L~~L~l~~N 363 (443)
.+..|+.+.|++... +...-+.+...+.|+.+++.+-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 566788888888754 3333355566777887777654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.84 E-value=0.18 Score=28.35 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCcEEecccccCCCCCCC
Q 035831 187 PSLKFLDLRYNNFEGELPC 205 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~ 205 (443)
++|++|+|++|+|. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.84 E-value=0.18 Score=28.35 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCcEEecccccCCCCCCC
Q 035831 187 PSLKFLDLRYNNFEGELPC 205 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~ 205 (443)
++|++|+|++|+|. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=0.04 Score=48.08 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=60.3
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC--Ccc-CCCCCCEEEccCC-cCcccCCcccCCCCCCcEE
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP--DFS-DWKLMFEFDVSNN-RLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L 192 (443)
.++.+|-++..|..+--+.+.+++.++.|.+.+++--+... -++ -.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 48899999999988777888889999999998886543322 122 3578999999976 4665555567778888888
Q ss_pred ecccc
Q 035831 193 DLRYN 197 (443)
Q Consensus 193 ~L~~n 197 (443)
.|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.50 E-value=0.19 Score=28.24 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=4.9
Q ss_pred CCEEEecCCcCCC
Q 035831 331 LSNFTFSYNYFQG 343 (443)
Q Consensus 331 L~~L~Ls~N~l~~ 343 (443)
|++|+|++|+|+.
T Consensus 4 L~~L~L~~N~l~~ 16 (26)
T smart00369 4 LRELDLSNNQLSS 16 (26)
T ss_pred CCEEECCCCcCCc
Confidence 3333333333333
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.50 E-value=0.19 Score=28.24 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=4.9
Q ss_pred CCEEEecCCcCCC
Q 035831 331 LSNFTFSYNYFQG 343 (443)
Q Consensus 331 L~~L~Ls~N~l~~ 343 (443)
|++|+|++|+|+.
T Consensus 4 L~~L~L~~N~l~~ 16 (26)
T smart00370 4 LRELDLSNNQLSS 16 (26)
T ss_pred CCEEECCCCcCCc
Confidence 3333333333333
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=0.089 Score=45.97 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred cCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcC-Cchhcc-CCCCCceEEcccc-cCCccCchhhcCCCCCCEE
Q 035831 258 NLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN-VPQSFS-SLESIQTLILSHN-QLTGFVSEQICKLPSLSNF 334 (443)
Q Consensus 258 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 334 (443)
.++.+|-++..|..+--+.+..++.++.|.+.++.--+. --+.++ -.++|+.|+|++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666666544445555555666665555432110 000011 2245666666655 3554444455555555555
Q ss_pred EecC
Q 035831 335 TFSY 338 (443)
Q Consensus 335 ~Ls~ 338 (443)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.28 E-value=0.29 Score=26.85 Aligned_cols=13 Identities=54% Similarity=0.700 Sum_probs=4.7
Q ss_pred CCceEEcccccCC
Q 035831 306 SIQTLILSHNQLT 318 (443)
Q Consensus 306 ~L~~L~Ls~N~l~ 318 (443)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.41 E-value=1.6 Score=24.64 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.3
Q ss_pred CCCEEEccCCcCc
Q 035831 164 LMFEFDVSNNRLV 176 (443)
Q Consensus 164 ~L~~L~Ls~n~l~ 176 (443)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555555443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.93 E-value=1.4 Score=52.80 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=18.5
Q ss_pred EcccccCCccCchhhcCCCCCCEEEecCCcCCC
Q 035831 311 ILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQG 343 (443)
Q Consensus 311 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 343 (443)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 355566655555555555555555555555544
No 89
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=75.31 E-value=4.8 Score=46.51 Aligned_cols=6 Identities=17% Similarity=-0.031 Sum_probs=2.3
Q ss_pred CceeeC
Q 035831 355 NSAFDD 360 (443)
Q Consensus 355 L~~L~l 360 (443)
++.++.
T Consensus 1623 I~vI~V 1628 (2039)
T PRK15319 1623 IEVVDV 1628 (2039)
T ss_pred cEEEEE
Confidence 333433
No 90
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=73.78 E-value=7.7 Score=38.57 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=14.8
Q ss_pred ceecCCCCCCCCCCcEEEEEcCCCCCc
Q 035831 103 GVFCAPALDDPNITVVAGIDLNGNDIA 129 (443)
Q Consensus 103 gv~c~~~~~~~~l~~L~~L~Ls~n~l~ 129 (443)
|+.|...-...+.--|+-.||.+++|.
T Consensus 64 Gal~lVkD~~~rsyFlrl~di~~~rli 90 (569)
T KOG3671|consen 64 GALCLVKDNAQRSYFLRLVDIVNNRLI 90 (569)
T ss_pred eeEEEeeccccceeeeEEeeecCceee
Confidence 555543222223345777788887754
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.52 E-value=10 Score=37.82 Aligned_cols=224 Identities=14% Similarity=-0.001 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCcccCchhhcCC---CCCCEEEccCCcCCcc---CC-CccCCCCCCEEEccCCcCcc----cCC----cc
Q 035831 118 VAGIDLNGNDIAGSFPAELGLL---TDLALFHVNSNRFCGI---IP-DFSDWKLMFEFDVSNNRLVG----SFP----RV 182 (443)
Q Consensus 118 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~---~~-~~~~l~~L~~L~Ls~n~l~~----~~~----~~ 182 (443)
+++++|+.|.....++..+..+ .-++.++.++..+.-. .+ .++.-++|+..+++.|.... +.+ +.
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~ 295 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDT 295 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccc
Confidence 5678888887776666554332 3466667766655432 12 34556678888887776541 112 22
Q ss_pred cCCCCCCcEEecccccCCCCCCCcccC-------CCCCEEEccCCccccc--CCccccCCccceeeeccCCCCCccchh-
Q 035831 183 VLSWPSLKFLDLRYNNFEGELPCDLFD-------MKLDALFLNNNRFSYS--IPEKLGRSTVSVVTFAHNNFNGCIPRS- 252 (443)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~L~~n~l~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~- 252 (443)
+..-.++ +|++..+....+-+..+.. ..=-++++..|...+. .-..+....+++|.+..|.+.+.....
T Consensus 296 fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg 374 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG 374 (553)
T ss_pred cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc
Confidence 3333456 6666666554333222211 0122344555444221 111122245788888888876654332
Q ss_pred -hhcCCcCceeeccCcccCcc-Ccccc--------CCCCCccEEEeeCCcCCcCCc---hhccCCCCCceEEcccccCCc
Q 035831 253 -IGNMQNLNEIILSDNKLSGC-FPSEI--------GSLKNLRVFDVSSNLFHGNVP---QSFSSLESIQTLILSHNQLTG 319 (443)
Q Consensus 253 -l~~l~~L~~L~Ls~n~l~~~-~p~~l--------~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~ 319 (443)
+..-+.++.+++.+-.-..+ .+... ....-+..+.++.+.+....- ..+..-+.+..|++++|....
T Consensus 375 k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 375 KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc
Confidence 33346677777655432100 11111 111346778888888763222 223445788999999998764
Q ss_pred ----cCchhhcCCCCCCEEEecCCcCC
Q 035831 320 ----FVSEQICKLPSLSNFTFSYNYFQ 342 (443)
Q Consensus 320 ----~~~~~l~~l~~L~~L~Ls~N~l~ 342 (443)
.+|..+....+++.+..+.|...
T Consensus 455 ~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 455 GGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred CCCCcCccccCCCCccCCCCCCCCCcc
Confidence 34555555667777777777554
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.22 E-value=2.5 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=12.2
Q ss_pred cCceeeCCCCCCCCCcc
Q 035831 354 VNSAFDDASNCLAERPS 370 (443)
Q Consensus 354 ~L~~L~l~~N~l~~~p~ 370 (443)
.|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46677777777777775
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.20 E-value=5 Score=22.92 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=8.3
Q ss_pred CCCCEEEccCCcCc
Q 035831 163 KLMFEFDVSNNRLV 176 (443)
Q Consensus 163 ~~L~~L~Ls~n~l~ 176 (443)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.49 E-value=3.2 Score=41.98 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=42.2
Q ss_pred CCCCccEEEeeCCcCCcCC--chhccCCCCCceEEcccc--cCCccCchhhcC--CCCCCEEEecCCcCCCC
Q 035831 279 SLKNLRVFDVSSNLFHGNV--PQSFSSLESIQTLILSHN--QLTGFVSEQICK--LPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N--~l~~~~~~~l~~--l~~L~~L~Ls~N~l~~~ 344 (443)
+.+.+..++|++|++.... ...-...++|+.|+|++| .+... .++.+ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4567888899999987321 112234578999999999 44422 22322 34588899999998764
No 95
>PRK09752 adhesin; Provisional
Probab=62.30 E-value=8.2 Score=42.81 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.1
Q ss_pred CCCCCCCCccc
Q 035831 92 WVDNTDVCSYN 102 (443)
Q Consensus 92 w~~~~~~c~~~ 102 (443)
|.+..++..|.
T Consensus 497 ~l~~~~~~~~~ 507 (1250)
T PRK09752 497 VLDLSDFSTWQ 507 (1250)
T ss_pred eEeccCccccc
Confidence 33333333443
No 96
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=62.15 E-value=20 Score=35.85 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=4.6
Q ss_pred CCEEEccCCc
Q 035831 142 LALFHVNSNR 151 (443)
Q Consensus 142 L~~L~L~~n~ 151 (443)
|+..+|-+|+
T Consensus 79 lrl~di~~~r 88 (569)
T KOG3671|consen 79 LRLVDIVNNR 88 (569)
T ss_pred eEEeeecCce
Confidence 4444444444
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.92 E-value=4.6 Score=40.93 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.1
Q ss_pred CCCCEEEccCC
Q 035831 163 KLMFEFDVSNN 173 (443)
Q Consensus 163 ~~L~~L~Ls~n 173 (443)
++|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 98
>PRK13042 superantigen-like protein; Reviewed
Probab=57.96 E-value=21 Score=32.95 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 035831 417 ELKTPTPAPPTPREAKVLRPKGT 439 (443)
Q Consensus 417 ~~~~~~~~~~~p~~~~~~~p~~~ 439 (443)
..++|+|.+.+|+.+.+..|..|
T Consensus 68 ~t~qptp~~~tp~~~~~~~pq~~ 90 (291)
T PRK13042 68 EAPQQTPNATTPSSTKVETPQSP 90 (291)
T ss_pred cCCCCCCCCCCCCccCcCCCCCC
Confidence 34445555555555544444433
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.14 E-value=18 Score=36.08 Aligned_cols=197 Identities=17% Similarity=0.030 Sum_probs=98.7
Q ss_pred CCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCC----CCCcccCCCCCEEEccCCcccccCCccccC----C
Q 035831 162 WKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGE----LPCDLFDMKLDALFLNNNRFSYSIPEKLGR----S 233 (443)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----~ 233 (443)
-+.++++|++.|.+....|-.+..-. --+.++.++++.. ++..-....+.+++++.|.....++..... .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 34567777777777665554443211 1145555554422 222222346778888888777666655533 3
Q ss_pred ccceeeeccCCCCC---ccchhhhcCCcCceeeccCcccCc----cCcc----ccCCCCCccEEEeeCCcCCcCCchh-c
Q 035831 234 TVSVVTFAHNNFNG---CIPRSIGNMQNLNEIILSDNKLSG----CFPS----EIGSLKNLRVFDVSSNLFHGNVPQS-F 301 (443)
Q Consensus 234 ~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~-l 301 (443)
.++.++.+...+.- ..+...+.-+++...+++.|..+. +.+. .+..-.++ +|++...+....-+.. +
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 35566666554431 122233444677777777765541 1222 22233455 6666655543222111 1
Q ss_pred cCC-----CCCceEEcccccCCccC-chhhcCCCCCCEEEecCCcCCCCCCCCC--CCCCcCceeeCC
Q 035831 302 SSL-----ESIQTLILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGLGNECI--PGSKVNSAFDDA 361 (443)
Q Consensus 302 ~~l-----~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~L~~L~l~ 361 (443)
-.+ ..=-++|++.|...+.- .++-..-..+++|+.+.|.+.+...... ...+..+.+++.
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAG 388 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeecccccccccc
Confidence 111 11134566666554321 1111222458999999999887655432 233445555543
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.08 E-value=20 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=29.3
Q ss_pred EeeCCcCCcCCchhccCCCCCceEEcccccCCc
Q 035831 287 DVSSNLFHGNVPQSFSSLESIQTLILSHNQLTG 319 (443)
Q Consensus 287 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 319 (443)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777889999999999999998863
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.36 E-value=36 Score=18.74 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=5.7
Q ss_pred CCCCEEEccCC
Q 035831 163 KLMFEFDVSNN 173 (443)
Q Consensus 163 ~~L~~L~Ls~n 173 (443)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 102
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=26.50 E-value=78 Score=31.84 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 035831 403 YTAPPKPTTIPPAPELKTPTPAPPTPREAKVLRPKGTTPPP 443 (443)
Q Consensus 403 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~ 443 (443)
...+-.|++++++...+.+.---..-+++|+..|-+|+|||
T Consensus 224 ~~~~~~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~ 264 (817)
T KOG1925|consen 224 APEPKEPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPL 264 (817)
T ss_pred CCCCCCCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCC
No 103
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=22.59 E-value=4e+02 Score=28.58 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccccCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------
Q 035831 361 ASNCLAERPSQKWANTCEPVVSNPVDCSRDMCSAGGTPPSIPYTAPPKPTTIPPAPELKTPTPAPP-------------- 426 (443)
Q Consensus 361 ~~N~l~~~p~~~~~~~~~~~~~np~~c~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------------- 426 (443)
++-....-+.............|...-.......+...+..+...+|+|++....++..+..-+++
T Consensus 942 ~g~~~~~~~~r~~~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~ 1021 (1106)
T KOG0162|consen 942 SGRDAASTPTRRAPQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGAS 1021 (1106)
T ss_pred CCcccccCCCCCCCCCcccccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCc
Q ss_pred ----CCCCCCCCCCC---CCCCCC
Q 035831 427 ----TPREAKVLRPK---GTTPPP 443 (443)
Q Consensus 427 ----~p~~~~~~~p~---~~~~~~ 443 (443)
.|+.++.++|+ +++|||
T Consensus 1022 ~~~~~~s~~q~~pP~~g~P~PpPp 1045 (1106)
T KOG0162|consen 1022 GNGRKPSGPQRPPPPAGRPKPPPP 1045 (1106)
T ss_pred ccccCCCCCCCCCCCCCCCCccCC
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.76 E-value=1.7e+02 Score=31.10 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 035831 394 AGGTPPSIPYTAPPKPTTIPPAPELKTPTPAPPTPREAKVLRPKGTTPPP 443 (443)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~ 443 (443)
+.......+...++++++++++...++.++.+++|++++++.+...+..+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (620)
T PRK14948 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAP 567 (620)
T ss_pred CCCCCCCCCccCCCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCcCcccc
Done!