Query 035831
Match_columns 443
No_of_seqs 771 out of 4506
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-41 2E-45 321.1 20.9 292 68-367 5-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 1E-39 3.4E-44 349.1 16.3 275 115-389 393-743 (768)
3 4eco_A Uncharacterized protein 100.0 1.6E-37 5.6E-42 325.0 18.8 299 65-373 26-453 (636)
4 3v47_A TOLL-like receptor 5B a 100.0 1.9E-36 6.5E-41 304.7 21.9 322 34-391 30-413 (455)
5 3rgz_A Protein brassinosteroid 100.0 4.1E-37 1.4E-41 328.9 14.5 258 117-374 369-701 (768)
6 2id5_A Lingo-1, leucine rich r 100.0 1.5E-34 5E-39 292.8 24.8 276 114-389 54-336 (477)
7 3t6q_A CD180 antigen; protein- 100.0 2.7E-35 9.2E-40 307.0 19.3 277 113-391 275-565 (606)
8 3v47_A TOLL-like receptor 5B a 100.0 1.9E-35 6.7E-40 297.3 16.8 309 25-370 45-412 (455)
9 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-34 8.2E-39 303.8 23.9 354 27-391 239-627 (680)
10 2id5_A Lingo-1, leucine rich r 100.0 1.6E-34 5.6E-39 292.5 21.0 320 34-390 32-360 (477)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-34 3.6E-39 302.5 18.0 159 233-391 399-563 (606)
12 4eco_A Uncharacterized protein 100.0 1.8E-34 6.2E-39 301.9 18.8 325 27-368 240-602 (636)
13 4fcg_A Uncharacterized protein 100.0 2.8E-34 9.6E-39 276.4 17.2 286 67-370 25-318 (328)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-33 6.2E-38 290.6 24.4 156 233-391 353-515 (562)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-33 4E-38 302.1 21.1 290 66-372 266-692 (876)
16 4ecn_A Leucine-rich repeat pro 100.0 1E-32 3.5E-37 294.8 25.4 304 30-371 487-824 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-33 8.8E-38 286.7 18.9 270 113-391 66-486 (520)
18 3t6q_A CD180 antigen; protein- 100.0 3.3E-33 1.1E-37 291.1 17.9 308 24-370 242-564 (606)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-32 4.3E-37 281.6 20.6 157 211-370 325-485 (520)
20 2z63_A TOLL-like receptor 4, v 100.0 3E-32 1E-36 281.6 22.0 139 253-391 392-536 (570)
21 3o6n_A APL1; leucine-rich repe 100.0 2.1E-32 7.2E-37 269.8 19.2 268 114-390 91-378 (390)
22 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-31 4.6E-36 258.3 23.3 243 117-366 55-307 (332)
23 1xku_A Decorin; proteoglycan, 100.0 2.6E-31 8.9E-36 256.0 25.2 243 117-366 53-306 (330)
24 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-31 4.2E-36 289.4 23.4 301 32-368 22-377 (844)
25 3vq2_A TLR4, TOLL-like recepto 100.0 1E-31 3.5E-36 279.9 21.0 124 251-374 393-518 (606)
26 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-31 9E-36 277.6 24.1 321 34-391 52-585 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-31 4.6E-36 276.6 21.4 315 34-370 52-514 (562)
28 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-31 4.7E-36 275.6 20.6 155 233-390 334-514 (549)
29 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-32 2.9E-36 290.6 19.2 305 24-370 38-398 (844)
30 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-32 1.9E-36 258.7 14.3 248 140-389 50-307 (313)
31 2z63_A TOLL-like receptor 4, v 100.0 5.9E-32 2E-36 279.5 15.1 138 233-370 396-535 (570)
32 3o6n_A APL1; leucine-rich repe 100.0 3.1E-31 1.1E-35 261.4 19.3 272 114-390 43-356 (390)
33 1xku_A Decorin; proteoglycan, 100.0 2.3E-30 7.9E-35 249.3 24.6 249 117-374 32-284 (330)
34 3oja_B Anopheles plasmodium-re 100.0 3.1E-31 1.1E-35 275.7 19.6 300 85-389 5-361 (597)
35 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-31 3.1E-35 276.4 23.4 319 34-366 25-418 (680)
36 2z80_A TOLL-like receptor 2, v 100.0 4.9E-31 1.7E-35 256.5 19.3 279 90-370 21-318 (353)
37 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-30 1.1E-34 248.6 24.5 249 117-375 34-286 (332)
38 4fmz_A Internalin; leucine ric 100.0 1.5E-30 5.2E-35 252.3 22.2 286 28-368 38-326 (347)
39 3oja_B Anopheles plasmodium-re 100.0 7.2E-31 2.5E-35 272.9 20.0 267 114-389 97-383 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.5E-29 5.2E-34 245.2 24.5 283 29-366 61-346 (347)
41 2z66_A Variable lymphocyte rec 100.0 3.2E-30 1.1E-34 245.7 19.0 230 140-370 28-265 (306)
42 3zyi_A Leucine-rich repeat-con 100.0 1.4E-29 4.7E-34 254.6 24.3 230 140-371 75-308 (452)
43 3zyj_A Leucine-rich repeat-con 100.0 2.1E-29 7.3E-34 252.3 23.7 247 119-370 46-296 (440)
44 2z66_A Variable lymphocyte rec 100.0 7E-30 2.4E-34 243.3 17.4 247 98-345 6-264 (306)
45 1o6v_A Internalin A; bacterial 100.0 4.2E-30 1.4E-34 259.3 14.9 306 31-370 43-370 (466)
46 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-29 1.2E-33 257.6 21.5 139 116-254 26-169 (549)
47 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-29 1.1E-33 261.8 20.3 139 233-371 445-585 (635)
48 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-28 9.2E-33 245.0 25.4 303 27-370 35-356 (457)
49 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4.1E-33 247.7 22.3 226 116-344 75-305 (452)
50 1o6v_A Internalin A; bacterial 100.0 1.2E-28 4E-33 248.7 21.4 242 112-369 86-347 (466)
51 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-28 4.7E-33 232.0 16.6 223 119-344 14-240 (285)
52 1ozn_A Reticulon 4 receptor; N 100.0 9.5E-28 3.3E-32 226.2 22.4 249 99-351 18-270 (285)
53 3zyj_A Leucine-rich repeat-con 100.0 4.5E-28 1.5E-32 242.7 21.3 227 116-344 64-294 (440)
54 2z80_A TOLL-like receptor 2, v 100.0 1.1E-28 3.7E-33 240.0 16.0 266 120-390 35-318 (353)
55 2o6q_A Variable lymphocyte rec 100.0 1.1E-27 3.9E-32 223.9 21.7 217 96-367 2-219 (270)
56 1wwl_A Monocyte differentiatio 100.0 6.7E-30 2.3E-34 244.2 4.8 244 115-368 42-311 (312)
57 1jl5_A Outer protein YOPM; leu 100.0 9.1E-28 3.1E-32 240.9 17.3 161 116-295 131-291 (454)
58 3o53_A Protein LRIM1, AGAP0063 100.0 3.3E-28 1.1E-32 233.0 12.6 238 117-366 11-250 (317)
59 4fcg_A Uncharacterized protein 99.9 1.4E-27 4.8E-32 229.6 16.6 204 115-344 103-316 (328)
60 1jl5_A Outer protein YOPM; leu 99.9 2.5E-26 8.6E-31 230.5 24.4 223 116-368 173-411 (454)
61 3oja_A Leucine-rich immune mol 99.9 9.1E-28 3.1E-32 243.2 11.6 214 141-366 35-250 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-28 8.3E-33 233.9 6.5 236 116-363 34-272 (317)
63 2z62_A TOLL-like receptor 4, v 99.9 3.4E-26 1.2E-30 214.5 19.5 204 141-368 29-239 (276)
64 3oja_A Leucine-rich immune mol 99.9 1.5E-27 5E-32 241.7 10.5 235 115-361 33-270 (487)
65 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-25 5.4E-30 224.8 24.9 209 115-346 41-250 (457)
66 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.5E-32 227.2 9.9 221 118-344 65-311 (312)
67 2z62_A TOLL-like receptor 4, v 99.9 9.3E-26 3.2E-30 211.5 19.1 206 116-344 28-239 (276)
68 1p9a_G Platelet glycoprotein I 99.9 7.2E-25 2.4E-29 207.0 21.0 204 136-367 6-209 (290)
69 1p9a_G Platelet glycoprotein I 99.9 1E-24 3.6E-29 205.8 19.6 205 159-391 6-213 (290)
70 1z7x_W Ribonuclease inhibitor; 99.9 6.3E-28 2.1E-32 242.8 -4.9 334 30-368 24-413 (461)
71 3g06_A SSPH2 (leucine-rich rep 99.9 8.8E-24 3E-28 218.8 26.0 263 34-373 40-304 (622)
72 3rfs_A Internalin B, repeat mo 99.9 2.7E-25 9.2E-30 208.0 12.5 220 118-349 21-242 (272)
73 3m19_A Variable lymphocyte rec 99.9 2.4E-24 8.2E-29 199.1 17.5 191 97-344 3-194 (251)
74 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 196.9 22.1 180 211-390 38-222 (270)
75 3goz_A Leucine-rich repeat-con 99.9 9.7E-26 3.3E-30 219.9 5.6 248 121-368 3-299 (362)
76 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 195.3 16.6 194 141-363 32-236 (239)
77 3rfs_A Internalin B, repeat mo 99.9 5.7E-24 2E-28 198.9 16.8 207 114-330 39-247 (272)
78 2ast_B S-phase kinase-associat 99.9 6.1E-26 2.1E-30 218.8 3.4 261 99-373 37-313 (336)
79 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-23 5E-28 217.1 20.1 219 116-371 61-279 (622)
80 4glp_A Monocyte differentiatio 99.9 3.4E-24 1.2E-28 204.4 13.5 199 163-367 91-308 (310)
81 1z7x_W Ribonuclease inhibitor; 99.9 3.9E-26 1.3E-30 229.7 -1.9 252 116-367 142-441 (461)
82 2ca6_A RAN GTPase-activating p 99.9 9.4E-26 3.2E-30 221.9 -0.4 238 132-369 24-319 (386)
83 4glp_A Monocyte differentiatio 99.9 4.5E-24 1.5E-28 203.6 11.1 224 116-344 64-309 (310)
84 1h6u_A Internalin H; cell adhe 99.9 6E-23 2E-27 195.5 17.3 193 115-345 40-233 (308)
85 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 186.7 19.7 178 189-368 16-194 (251)
86 1h6u_A Internalin H; cell adhe 99.9 5.6E-23 1.9E-27 195.7 14.9 214 120-373 23-237 (308)
87 3goz_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 207.8 6.2 230 116-345 22-300 (362)
88 2ca6_A RAN GTPase-activating p 99.9 1.3E-24 4.5E-29 213.7 1.8 232 115-346 31-320 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5E-27 185.6 14.9 185 163-373 31-225 (239)
90 3cvr_A Invasion plasmid antige 99.9 1.3E-22 4.5E-27 207.6 13.6 197 100-328 49-253 (571)
91 4ay9_X Follicle-stimulating ho 99.9 5.7E-22 2E-26 192.2 14.9 236 99-339 9-256 (350)
92 2ast_B S-phase kinase-associat 99.9 3.2E-23 1.1E-27 199.6 4.0 232 116-351 70-315 (336)
93 2o6s_A Variable lymphocyte rec 99.9 2.3E-21 7.7E-26 173.7 14.7 62 139-200 27-89 (208)
94 4ay9_X Follicle-stimulating ho 99.9 4.6E-21 1.6E-25 185.9 17.7 237 119-364 12-257 (350)
95 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.8E-25 193.3 17.1 186 141-351 60-252 (571)
96 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.4E-25 168.8 14.8 103 98-200 6-113 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 2.9E-20 1E-24 168.0 15.3 157 214-372 15-171 (220)
98 1h6t_A Internalin B; cell adhe 99.8 1.7E-20 5.7E-25 177.1 13.5 171 138-344 44-215 (291)
99 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.8E-25 183.9 12.6 179 189-369 20-205 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 6.2E-20 2.1E-24 165.9 15.6 136 235-370 34-170 (220)
101 1m9s_A Internalin B; cell inva 99.8 1.3E-20 4.5E-25 194.7 12.0 191 116-344 21-212 (605)
102 2xot_A Amphoterin-induced prot 99.8 3.3E-20 1.1E-24 180.6 12.4 176 166-344 21-204 (361)
103 1h6t_A Internalin B; cell adhe 99.8 6.1E-20 2.1E-24 173.2 13.6 171 114-320 44-215 (291)
104 3e6j_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 162.3 16.4 162 91-319 11-173 (229)
105 3e6j_A Variable lymphocyte rec 99.8 3.9E-19 1.3E-23 161.7 16.8 156 211-369 20-175 (229)
106 3ogk_B Coronatine-insensitive 99.8 4.8E-22 1.6E-26 206.2 -3.6 255 115-371 219-531 (592)
107 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 160.7 15.3 152 191-344 15-167 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 3.8E-19 1.3E-23 160.7 15.3 153 191-345 15-169 (220)
109 1xeu_A Internalin C; cellular 99.8 5.4E-20 1.9E-24 171.0 7.5 171 114-320 17-187 (263)
110 1dce_A Protein (RAB geranylger 99.8 1.3E-22 4.6E-27 208.3 -12.6 204 137-360 346-567 (567)
111 1m9s_A Internalin B; cell inva 99.8 6E-19 2E-23 182.3 14.2 170 114-295 41-211 (605)
112 4b8c_D Glucose-repressible alc 99.8 5.3E-20 1.8E-24 194.7 5.1 210 73-322 136-358 (727)
113 1xeu_A Internalin C; cellular 99.8 7.5E-20 2.6E-24 170.0 5.1 174 138-348 17-191 (263)
114 4ezg_A Putative uncharacterize 99.8 1.3E-18 4.5E-23 154.3 12.3 87 252-342 107-194 (197)
115 3ogk_B Coronatine-insensitive 99.8 4.1E-21 1.4E-25 199.1 -5.2 250 112-363 266-548 (592)
116 4ezg_A Putative uncharacterize 99.8 8E-18 2.7E-22 149.2 13.5 129 233-367 66-195 (197)
117 1dce_A Protein (RAB geranylger 99.7 3.8E-21 1.3E-25 197.5 -11.5 203 113-336 346-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.1E-22 145.6 12.7 110 235-344 31-141 (192)
119 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.7E-22 159.9 11.8 104 255-360 224-328 (329)
120 2p1m_B Transport inhibitor res 99.7 7E-20 2.4E-24 189.9 -4.8 204 161-366 287-519 (594)
121 2ell_A Acidic leucine-rich nuc 99.7 1.2E-17 4.2E-22 144.0 9.8 137 233-371 24-165 (168)
122 1w8a_A SLIT protein; signaling 99.7 2.8E-17 9.6E-22 145.1 12.3 133 236-371 11-144 (192)
123 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.4E-23 183.3 3.0 192 118-318 193-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4.2E-21 141.1 12.8 131 236-370 13-143 (193)
125 2p1m_B Transport inhibitor res 99.7 1.7E-19 5.9E-24 186.9 -8.3 112 255-367 370-495 (594)
126 2wfh_A SLIT homolog 2 protein 99.7 3.5E-16 1.2E-20 138.1 13.6 110 234-344 32-141 (193)
127 2o6r_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 133.9 14.2 132 236-370 10-141 (177)
128 2o6r_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 133.6 14.1 132 213-346 10-141 (177)
129 2ell_A Acidic leucine-rich nuc 99.7 2.8E-16 9.7E-21 135.4 10.8 111 233-345 49-163 (168)
130 2je0_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 136.0 6.8 127 233-361 17-148 (149)
131 4fdw_A Leucine rich hypothetic 99.7 4.6E-15 1.6E-19 145.9 20.5 244 117-373 114-365 (401)
132 3sb4_A Hypothetical leucine ri 99.7 1.6E-16 5.5E-21 152.5 8.8 251 116-375 25-319 (329)
133 2je0_A Acidic leucine-rich nuc 99.6 2.9E-16 1E-20 132.5 8.9 84 116-200 17-101 (149)
134 4fdw_A Leucine rich hypothetic 99.6 1.7E-14 5.8E-19 141.8 20.9 246 109-366 129-383 (401)
135 3g39_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 123.9 12.1 109 259-370 11-119 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-15 9E-20 130.4 5.6 18 183-200 15-32 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 3.7E-17 1.3E-21 145.0 -6.5 67 252-320 88-155 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-15 1.4E-19 129.1 6.7 131 233-367 19-154 (176)
139 2r9u_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 123.1 12.1 108 260-370 15-122 (174)
140 1ds9_A Outer arm dynein; leuci 99.5 6.5E-17 2.2E-21 143.5 -5.7 132 135-318 43-185 (198)
141 3g39_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 121.3 10.9 108 235-345 11-118 (170)
142 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 119.8 11.0 107 236-345 15-121 (174)
143 4fs7_A Uncharacterized protein 99.4 2.6E-12 8.8E-17 126.2 15.1 312 24-363 61-376 (394)
144 2ifg_A High affinity nerve gro 99.4 1.7E-12 5.9E-17 125.1 12.5 107 261-370 12-120 (347)
145 3un9_A NLR family member X1; l 99.4 1.4E-14 4.8E-19 141.0 -4.2 66 254-319 180-253 (372)
146 3un9_A NLR family member X1; l 99.3 5.7E-14 2E-18 136.7 -2.7 183 162-365 71-282 (372)
147 2ifg_A High affinity nerve gro 99.3 4.8E-12 1.6E-16 122.0 10.4 102 239-343 14-117 (347)
148 4fs7_A Uncharacterized protein 99.3 2.8E-10 9.6E-15 111.6 20.3 258 104-374 59-363 (394)
149 4gt6_A Cell surface protein; l 99.3 2.5E-10 8.7E-15 111.9 19.3 111 250-364 258-368 (394)
150 4gt6_A Cell surface protein; l 99.2 2.1E-09 7.1E-14 105.4 21.1 262 104-375 51-355 (394)
151 4h09_A Hypothetical leucine ri 99.1 1.8E-08 6.3E-13 98.0 22.1 260 102-373 55-352 (379)
152 2ra8_A Uncharacterized protein 98.9 4.7E-10 1.6E-14 108.3 4.7 84 279-364 250-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 1.4E-07 4.8E-12 91.7 20.6 248 116-374 46-330 (379)
154 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.5E-14 103.6 4.3 82 233-316 252-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 2.1E-09 7.2E-14 93.7 -0.5 114 252-365 31-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 7.5E-09 2.6E-13 90.1 2.2 111 233-343 36-165 (185)
157 3rw6_A Nuclear RNA export fact 98.6 7E-08 2.4E-12 88.5 6.3 78 115-193 169-257 (267)
158 3rw6_A Nuclear RNA export fact 98.4 6.5E-08 2.2E-12 88.7 2.2 80 254-335 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 7.2E-07 2.5E-11 76.1 1.6 83 116-198 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.8E-06 6E-11 73.7 3.7 82 258-339 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 4.1E-06 1.4E-10 72.8 2.9 62 277-338 66-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 2.9E-06 1E-10 73.7 0.9 110 233-342 41-170 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00031 1.1E-08 56.8 5.6 38 330-367 32-69 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0015 5E-08 52.7 5.9 36 282-317 32-67 (130)
165 2lz0_A Uncharacterized protein 70.4 11 0.00039 28.0 6.3 44 128-172 8-52 (100)
166 2lz0_A Uncharacterized protein 62.6 10 0.00036 28.2 4.6 48 149-197 5-53 (100)
167 3ghp_A Cellulosomal scaffoldin 28.6 43 0.0015 28.3 3.3 7 359-365 154-160 (227)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.9e-41 Score=321.09 Aligned_cols=292 Identities=25% Similarity=0.399 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCc--ccceecCCCCCCCCCCcEEEEEcCCCCCcc--cCchhhcCCCCCC
Q 035831 68 KKAYVALQAFKKSIYSDPFNTTANWVDNTDVCS--YNGVFCAPALDDPNITVVAGIDLNGNDIAG--SFPAELGLLTDLA 143 (443)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 143 (443)
..+..+|.+||..+ .|+. .+.+|..+.++|. |.||+|.... ...+|++|+|++|++++ .+|..|+++++|+
T Consensus 5 ~~~~~aL~~~k~~~-~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 5 PQDKQALLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp HHHHHHHHHHHHHT-TCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred HHHHHHHHHHHHhc-CCcc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 35678899999998 5665 7889987788998 9999997532 12579999999999998 8999999999999
Q ss_pred EEEccC-CcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCC
Q 035831 144 LFHVNS-NRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNN 220 (443)
Q Consensus 144 ~L~L~~-n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n 220 (443)
+|++++ |.+.+..+ .|.++++|++|+|++|++++.+|..|.++++|++|++++|.+++.+|..+... +|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 99998877 89999999999999999999999999999999999999999999999888876 9999999999
Q ss_pred cccccCCccccC-C-ccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCc
Q 035831 221 RFSYSIPEKLGR-S-TVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVP 298 (443)
Q Consensus 221 ~l~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 298 (443)
++++.+|..++. . .|++|++++|++.+.++..+..+. |++|++++|.+++..+..+..+++|++|++++|++++.++
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 999999988876 4 799999999999999999999997 9999999999999999999999999999999999996666
Q ss_pred hhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCC-CCC
Q 035831 299 QSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNC-LAE 367 (443)
Q Consensus 299 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~-l~~ 367 (443)
. +..+++|++|++++|+|++.+|..+..+++|++|++++|++++.+|.. ..++.|+.+++.+|+ +.+
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 5 888999999999999999999999999999999999999999988876 788999999999997 444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-39 Score=349.13 Aligned_cols=275 Identities=24% Similarity=0.445 Sum_probs=246.8
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
+++|++|++++|.+++.+|..|+++++|++|++++|++++..+ .|.++++|++|++++|++++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5679999999999999999999999999999999999998888 899999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 194 LRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
+++|++++.+|..+... +|++|++++|++++.+|..++. .+|++|++++|++.+.+|..++++++|++|++++|.++|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 99999999999888876 9999999999999999988865 789999999999999999999999999999999999887
Q ss_pred cCcccc----------------------------------------------------------------------CCCC
Q 035831 272 CFPSEI----------------------------------------------------------------------GSLK 281 (443)
Q Consensus 272 ~~p~~l----------------------------------------------------------------------~~l~ 281 (443)
.+|..+ +.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 776543 3356
Q ss_pred CccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCC
Q 035831 282 NLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDA 361 (443)
Q Consensus 282 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~ 361 (443)
+|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..++.|++||++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-Ccccc-ccc-cCCCCccCCCCCCC
Q 035831 362 SNCLAE-RPSQK-WAN-TCEPVVSNPVDCSR 389 (443)
Q Consensus 362 ~N~l~~-~p~~~-~~~-~~~~~~~np~~c~~ 389 (443)
+|++++ +|... +.. ....+.+||.-|..
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999987 55432 111 22345688888853
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-37 Score=325.02 Aligned_cols=299 Identities=19% Similarity=0.318 Sum_probs=252.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCC-------CCCCCCCCCcc---cceecCCCCCCCCCCcEEEEEcCCCCCcccCch
Q 035831 65 ERLKKAYVALQAFKKSIYSDPFNTTA-------NWVDNTDVCSY---NGVFCAPALDDPNITVVAGIDLNGNDIAGSFPA 134 (443)
Q Consensus 65 ~~l~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 134 (443)
.....++.||.++++++..+.|...+ +|..+.++|.| .||+|... .+|+.|+|+++++.|.+|.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEEEECG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCCcCCh
Confidence 34457889999999998777676555 89988999999 99999753 5899999999999999999
Q ss_pred hhcCCCCCCEEEccCCcC--------------------------------------------------------------
Q 035831 135 ELGLLTDLALFHVNSNRF-------------------------------------------------------------- 152 (443)
Q Consensus 135 ~~~~l~~L~~L~L~~n~i-------------------------------------------------------------- 152 (443)
+|+++++|++|+|++|.+
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999999843
Q ss_pred ----------------CccCCCccCCCCCCEEEccCCcCccc-----------------CCcccC--CCCCCcEEecccc
Q 035831 153 ----------------CGIIPDFSDWKLMFEFDVSNNRLVGS-----------------FPRVVL--SWPSLKFLDLRYN 197 (443)
Q Consensus 153 ----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n 197 (443)
++++..|+++++|++|+|++|++++. +|..+. ++++|++|+|++|
T Consensus 180 ~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred ccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 34333788999999999999999985 899998 9999999999999
Q ss_pred cCCCCCCCcccCC-CCCEEEccCCc-ccc-cCCccccC-------CccceeeeccCCCCCccch--hhhcCCcCceeecc
Q 035831 198 NFEGELPCDLFDM-KLDALFLNNNR-FSY-SIPEKLGR-------STVSVVTFAHNNFNGCIPR--SIGNMQNLNEIILS 265 (443)
Q Consensus 198 ~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~-------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls 265 (443)
.+.+.+|..+... +|++|++++|+ +++ .+|..++. .+|++|++++|+++ .+|. .++++++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999988886 99999999998 888 78887765 78999999999999 7777 89999999999999
Q ss_pred CcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCC-CceEEcccccCCccCchhhcCCC--CCCEEEecCCcCC
Q 035831 266 DNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLES-IQTLILSHNQLTGFVSEQICKLP--SLSNFTFSYNYFQ 342 (443)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~ 342 (443)
+|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|+++
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 999998888 8888888888888888888 77777888888 888888888888 5566666544 7888888888888
Q ss_pred CCCCCCCC-------CCCcCceeeCCCCCCCCCccccc
Q 035831 343 GLGNECIP-------GSKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 343 ~~~~~~~~-------~~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
+..|..+. .+.+|+.|++++|.|+.+|...+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH
Confidence 87777666 66677777777777777666443
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-36 Score=304.69 Aligned_cols=322 Identities=17% Similarity=0.187 Sum_probs=237.8
Q ss_pred HHhhhcCCCCC---CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCC
Q 035831 34 TRRQLLTLPKD---GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPAL 110 (443)
Q Consensus 34 ~~l~~l~l~~~---~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~ 110 (443)
.+|+.|++++| +..|..|.++.+|++|++++|++.. .+ +..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----------~i--------------------------~~~ 73 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----------VI--------------------------RNN 73 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----------EE--------------------------CTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----------eE--------------------------Ccc
Confidence 67888999988 3347889999999999998776310 00 001
Q ss_pred CCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC---CccCCCCCCEEEccCCcCcccCCcc-cCCC
Q 035831 111 DDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP---DFSDWKLMFEFDVSNNRLVGSFPRV-VLSW 186 (443)
Q Consensus 111 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l 186 (443)
.+.++++|++|+|++|.+++..+..|+++++|++|++++|++++..+ .|..+++|++|+|++|++++..|.. +.++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 23456788999999999988888889999999999999999887433 4888899999999999998777765 7888
Q ss_pred CCCcEEecccccCCCCCCCcccC---CCCCEEEccCCcccccCCccc---------cCCccceeeeccCCCCCccchhhh
Q 035831 187 PSLKFLDLRYNNFEGELPCDLFD---MKLDALFLNNNRFSYSIPEKL---------GRSTVSVVTFAHNNFNGCIPRSIG 254 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~l~ 254 (443)
++|++|++++|.+++..+..+.. .+|+.|++++|.+.+..+..+ ...+|++|++++|++.+..+..+.
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 99999999999988776666554 366777777777664333222 224567777777766654444332
Q ss_pred c---------------------------------------CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCc
Q 035831 255 N---------------------------------------MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHG 295 (443)
Q Consensus 255 ~---------------------------------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 295 (443)
. ..+|++|++++|.+++..+..++.+++|++|++++|++++
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 2 1467788888888877777778888888888888888887
Q ss_pred CCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccc
Q 035831 296 NVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWAN 375 (443)
Q Consensus 296 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~ 375 (443)
..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+|++++...+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 77777888888888888888888777777888888888888888888877777888888888888888888877654432
Q ss_pred cC----CCCccCCCCCCCCC
Q 035831 376 TC----EPVVSNPVDCSRDM 391 (443)
Q Consensus 376 ~~----~~~~~np~~c~~~~ 391 (443)
.. ..+.+|++.|+|+.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 21 23567888887763
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-37 Score=328.95 Aligned_cols=258 Identities=29% Similarity=0.463 Sum_probs=232.1
Q ss_pred cEEEEEcCCCCCcccCchhhcC--CCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 117 VVAGIDLNGNDIAGSFPAELGL--LTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
+|+.|++++|.+++.++..+.. +++|++|++++|++++..+ .+.++++|++|++++|++++.+|..+..+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 6788888888888777777776 7889999999999988777 899999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 194 LRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
+++|.+.+.+|..+... +|++|++++|++++.+|..++. .+|++|++++|++.+.+|..++.+++|++|++++|++++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 99999999999888776 9999999999999999988865 789999999999999999999999999999999999999
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhc--------------------------------------------------
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSF-------------------------------------------------- 301 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-------------------------------------------------- 301 (443)
.+|..++.+++|+.|++++|++++.+|..+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 999999999999999999999987777543
Q ss_pred --------------------cCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCC
Q 035831 302 --------------------SSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDA 361 (443)
Q Consensus 302 --------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~ 361 (443)
..+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..+..++.|+.||++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 235678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccc
Q 035831 362 SNCLAERPSQKWA 374 (443)
Q Consensus 362 ~N~l~~~p~~~~~ 374 (443)
+|++++..+..+.
T Consensus 689 ~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 689 SNKLDGRIPQAMS 701 (768)
T ss_dssp SSCCEECCCGGGG
T ss_pred CCcccCcCChHHh
Confidence 9999975544443
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=292.82 Aligned_cols=276 Identities=17% Similarity=0.158 Sum_probs=148.7
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEE
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 192 (443)
++++|++|+|++|.+++..+..|.++++|++|+|++|+++++++ .|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 34455556666665555555555555666666666665555554 45555566666666665555555555555566666
Q ss_pred ecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccC
Q 035831 193 DLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLS 270 (443)
Q Consensus 193 ~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 270 (443)
++++|.+.+..+..+... +|++|++++|++++..+..+.. .+|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 666655554444444443 5556666555555333333322 45555555555555554455555555555555555544
Q ss_pred ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCC
Q 035831 271 GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIP 350 (443)
Q Consensus 271 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 350 (443)
+.++..+....+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|..+++|++|++++|+++++.+..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 44444444444555555555555533334455555555555555555555555555555555555555555555555555
Q ss_pred CCCcCceeeCCCCCCCCCcccccccc----CCCCccCCCCCCC
Q 035831 351 GSKVNSAFDDASNCLAERPSQKWANT----CEPVVSNPVDCSR 389 (443)
Q Consensus 351 ~~~~L~~L~l~~N~l~~~p~~~~~~~----~~~~~~np~~c~~ 389 (443)
.+++|+.|++++|.|++++...+... ...+.+|++.|+|
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 55555555555555555554433221 1123455555554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-35 Score=306.97 Aligned_cols=277 Identities=18% Similarity=0.210 Sum_probs=179.9
Q ss_pred CCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCc-ccCCCCCCc
Q 035831 113 PNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPR-VVLSWPSLK 190 (443)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~ 190 (443)
.++++|++|++++|.++ .+|..+.++++|++|++++|++.+..+ .+.++++|++|++++|.+.+.++. .+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 34444555555555544 344444455555555555555554444 445555555555555554433332 255555555
Q ss_pred EEecccccCCCCC--CCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccch-hhhcCCcCceeecc
Q 035831 191 FLDLRYNNFEGEL--PCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPR-SIGNMQNLNEIILS 265 (443)
Q Consensus 191 ~L~L~~n~l~~~~--~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls 265 (443)
+|++++|.+++.. +..+... +|++|++++|.+.+..+..+.. .+|++|++++|++.+..+. .+..+++|++|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 5555555555332 3333333 6666666666666555555543 5677777777777655443 36777777777777
Q ss_pred CcccCccCccccCCCCCccEEEeeCCcCCcC---CchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCC
Q 035831 266 DNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN---VPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQ 342 (443)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 342 (443)
+|.+++..+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 7777766777777788888888888887652 2355777888888888888888887888888888888888888888
Q ss_pred CCCCCCCCCCCcCceeeCCCCCCCCCccccccc----cCCCCccCCCCCCCCC
Q 035831 343 GLGNECIPGSKVNSAFDDASNCLAERPSQKWAN----TCEPVVSNPVDCSRDM 391 (443)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~----~~~~~~~np~~c~~~~ 391 (443)
+..+..+..++.| .|++++|.++++++..+.. ....+.+||+.|+|..
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 8888888888888 8888888888877665432 2235679999999863
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-35 Score=297.30 Aligned_cols=309 Identities=15% Similarity=0.198 Sum_probs=248.9
Q ss_pred cChHHHHHHHHhhhcCCCCC---CCC-CCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCc
Q 035831 25 LSDAEAAFITRRQLLTLPKD---GKL-PDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCS 100 (443)
Q Consensus 25 ~~~~~~~~~~~l~~l~l~~~---~~~-P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~ 100 (443)
+.+..++.+.+|+.|++++| +.+ |..|.++.+|++|++++|++... .
T Consensus 45 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------------~---------------- 95 (455)
T 3v47_A 45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-------------E---------------- 95 (455)
T ss_dssp ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-------------C----------------
T ss_pred CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-------------C----------------
Confidence 44678899999999999999 345 57899999999999998874210 0
Q ss_pred ccceecCCCCCCCCCCcEEEEEcCCCCCcccCchh--hcCCCCCCEEEccCCcCCccCC-C-ccCCCCCCEEEccCCcCc
Q 035831 101 YNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAE--LGLLTDLALFHVNSNRFCGIIP-D-FSDWKLMFEFDVSNNRLV 176 (443)
Q Consensus 101 ~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~-~~~l~~L~~L~Ls~n~l~ 176 (443)
...+.++++|++|+|++|.+++..+.. |+++++|++|++++|++.+..+ . +.++++|++|++++|+++
T Consensus 96 --------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 96 --------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp --------TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred --------hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 012334567888888888888655544 8888888888888888888766 3 788888888888888888
Q ss_pred ccCCcccCCC--CCCcEEecccccCCCCCCCccc--------C-CCCCEEEccCCcccccCCccc---------------
Q 035831 177 GSFPRVVLSW--PSLKFLDLRYNNFEGELPCDLF--------D-MKLDALFLNNNRFSYSIPEKL--------------- 230 (443)
Q Consensus 177 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~--------~-~~L~~L~L~~n~l~~~~~~~~--------------- 230 (443)
+..+..+..+ .+|+.|++++|.+.+..+..+. . .+|++|++++|++++..+..+
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766655 5667777777776632222111 1 356666666666654332211
Q ss_pred -------------------------cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccE
Q 035831 231 -------------------------GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRV 285 (443)
Q Consensus 231 -------------------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 285 (443)
...+|++|++++|++.+..+..++.+++|++|++++|++++..+..|..+++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 1147999999999999999999999999999999999999888889999999999
Q ss_pred EEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCC
Q 035831 286 FDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 286 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l 365 (443)
|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|+|+++++..+..+++|+.|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999999988899999999999999999999999899999999999999999999999888899999999999999999
Q ss_pred CCCcc
Q 035831 366 AERPS 370 (443)
Q Consensus 366 ~~~p~ 370 (443)
++-.+
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 98554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-34 Score=303.82 Aligned_cols=354 Identities=14% Similarity=0.163 Sum_probs=281.5
Q ss_pred hHHHHHHHH--hhhcCCCCC---CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCc
Q 035831 27 DAEAAFITR--RQLLTLPKD---GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWV-DNTDVCS 100 (443)
Q Consensus 27 ~~~~~~~~~--l~~l~l~~~---~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~~c~ 100 (443)
+..+..+.. |+.|++++| +..|..|.++.+|++|++++|.+.... .+......... -....|.
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-----------SHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-----------TTTTTTCTTCCEEECTTCB
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-----------hhhhcCCCCccEEeccchh
Confidence 556777766 999999999 344578999999999999988753210 00000111100 0000010
Q ss_pred ------ccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCC--ccCC-CccCC--CCCCEEE
Q 035831 101 ------YNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFC--GIIP-DFSDW--KLMFEFD 169 (443)
Q Consensus 101 ------~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~-~~~~l--~~L~~L~ 169 (443)
+..+.......+..+++|++|++++|.+++..+..|.++++|++|++++|.+. .+.. .|..+ .+|++|+
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 11222222335667899999999999999988899999999999999999854 3333 45443 5899999
Q ss_pred ccCCcCcccCCcccCCCCCCcEEecccccCCCCCCC-cccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCC
Q 035831 170 VSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPC-DLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFN 246 (443)
Q Consensus 170 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 246 (443)
+++|++++..+..+..+++|++|++++|.+.+.++. .+... +|++|++++|++.+..+..+.. .+|++|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 999999999999999999999999999999877774 44444 9999999999998777777754 78999999999986
Q ss_pred --CccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCc--------hhccCCCCCceEEccccc
Q 035831 247 --GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVP--------QSFSSLESIQTLILSHNQ 316 (443)
Q Consensus 247 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~ 316 (443)
+..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++... ..+.++++|++|+|++|+
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 5678899999999999999999998777889999999999999999985422 237889999999999999
Q ss_pred CCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccccc----c-cCCCCccCCCCCCCCC
Q 035831 317 LTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWA----N-TCEPVVSNPVDCSRDM 391 (443)
Q Consensus 317 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~----~-~~~~~~~np~~c~~~~ 391 (443)
++.+.+..|.++++|+.|++++|+++++++..|..+++|+.|++++|.|++++...+. . ....+.+|||.|+|..
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9977777899999999999999999999999999999999999999999999876543 1 2235679999999985
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=292.48 Aligned_cols=320 Identities=18% Similarity=0.129 Sum_probs=266.8
Q ss_pred HHhhhcCCCCC--CCC-CCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCC
Q 035831 34 TRRQLLTLPKD--GKL-PDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPAL 110 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~-P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~ 110 (443)
..++.|++++| ..+ |..|.++.+|++|++++|.+. ++ ...
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----------------------------------~~---~~~ 74 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----------------------------------AV---EPG 74 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----------------------------------EE---CTT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC----------------------------------Ee---Chh
Confidence 45677777777 333 467777777777777665531 11 112
Q ss_pred CCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035831 111 DDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSL 189 (443)
Q Consensus 111 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 189 (443)
.+.++++|++|+|++|.+++..+..|.++++|++|+|++|++.++.+ .|.++++|++|++++|.+++..+..|..+++|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 34567889999999999997777779999999999999999999988 89999999999999999998888999999999
Q ss_pred cEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCc
Q 035831 190 KFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDN 267 (443)
Q Consensus 190 ~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 267 (443)
++|++++|.+++..+..+... +|+.|++++|.+.+..+..+.. .+|++|++++|...+.++..+....+|++|++++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 999999999994443445554 9999999999999776666654 78999999999988888877777779999999999
Q ss_pred ccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCC
Q 035831 268 KLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNE 347 (443)
Q Consensus 268 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 347 (443)
++++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+|+++.+.
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 99965557899999999999999999988888899999999999999999999999999999999999999999999888
Q ss_pred CCCCCCcCceeeCCCCCCCCCccccccccC---CCCccCCCCCCCC
Q 035831 348 CIPGSKVNSAFDDASNCLAERPSQKWANTC---EPVVSNPVDCSRD 390 (443)
Q Consensus 348 ~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~---~~~~~np~~c~~~ 390 (443)
.|..+++|+.|++++|++.+-....|.... ..+.++.+.|.++
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred HcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 899999999999999999876655553221 2234455666544
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-34 Score=302.47 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=138.0
Q ss_pred CccceeeeccCCCCCccc-hhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCc-CCchhccCCCCCceE
Q 035831 233 STVSVVTFAHNNFNGCIP-RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHG-NVPQSFSSLESIQTL 310 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 310 (443)
.+|++|++++|++.+..+ ..+.++++|++|++++|.+++..+..+..+++|++|++++|++++ .+|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 667888888888877766 578888999999999999988888889999999999999999987 478889999999999
Q ss_pred EcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccc----cCCCCccCCCC
Q 035831 311 ILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWAN----TCEPVVSNPVD 386 (443)
Q Consensus 311 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~----~~~~~~~np~~ 386 (443)
++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+|+.+|...... ....+.+||+.
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 99999999998999999999999999999999999999999999999999999999988863221 11246799999
Q ss_pred CCCCC
Q 035831 387 CSRDM 391 (443)
Q Consensus 387 c~~~~ 391 (443)
|+|+.
T Consensus 559 c~c~~ 563 (606)
T 3vq2_A 559 CICEH 563 (606)
T ss_dssp CSSTT
T ss_pred cCCcc
Confidence 99975
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-34 Score=301.94 Aligned_cols=325 Identities=19% Similarity=0.196 Sum_probs=169.7
Q ss_pred hHHHH--HHHHhhhcCCCCC---CCCCCCCCcccCCCcccccchh-HHH--HHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 035831 27 DAEAA--FITRRQLLTLPKD---GKLPDNFDDEYGLKNKTFANER-LKK--AYVALQAFKKSIYSDPFNTTANWVDNTDV 98 (443)
Q Consensus 27 ~~~~~--~~~~l~~l~l~~~---~~~P~~~~~~~~l~~l~~~~~~-l~~--~~~~l~~~~~~~~~~~~~~~~~w~~~~~~ 98 (443)
+++++ .+.+|+.|++++| +.+|..|.++.+|++|++++|+ +.. .+..+..+..... ...+.... ...
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~---l~~L~~L~--L~~ 314 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV---GEKIQIIY--IGY 314 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG---GGTCCEEE--CCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc---CCCCCEEE--CCC
Confidence 44555 8999999999998 7899999999999999999997 643 4444444321000 00000000 001
Q ss_pred CcccceecCCC-CCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCC-CCEEEccCCcCc
Q 035831 99 CSYNGVFCAPA-LDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKL-MFEFDVSNNRLV 176 (443)
Q Consensus 99 c~~~gv~c~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~-L~~L~Ls~n~l~ 176 (443)
|... ..+. ..+.++++|++|++++|.++|.+| .|+++++|++|++++|++..++..+.++++ |++|++++|+++
T Consensus 315 n~l~---~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 315 NNLK---TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp SCCS---SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred CcCC---ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 1111 0000 012334455555555555555555 555555555555555555543335555555 555555555555
Q ss_pred ccCCcccCCCC--CCcEEecccccCCCCCCCccc-------CC-CCCEEEccCCcccccCCccc-c-CCccceeeeccCC
Q 035831 177 GSFPRVVLSWP--SLKFLDLRYNNFEGELPCDLF-------DM-KLDALFLNNNRFSYSIPEKL-G-RSTVSVVTFAHNN 244 (443)
Q Consensus 177 ~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~~-~L~~L~L~~n~l~~~~~~~~-~-~~~L~~L~L~~n~ 244 (443)
.+|..+..+. +|++|++++|.+++.+|..+. .. +|++|++++|+++ .+|..+ . ..+|++|++++|+
T Consensus 391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence 4454444433 555555555555555444443 22 5555555555555 333322 1 2455555555555
Q ss_pred CCCccch-hhhcC-------CcCceeeccCcccCccCccccC--CCCCccEEEeeCCcCCcCCchhccCCCCCceEEc--
Q 035831 245 FNGCIPR-SIGNM-------QNLNEIILSDNKLSGCFPSEIG--SLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL-- 312 (443)
Q Consensus 245 l~~~~~~-~l~~l-------~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L-- 312 (443)
+. .+|. .+... ++|++|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+|
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 55 2222 22211 15555555555555 4555544 55555555555555554 5555555555555555
Q ss_pred ----ccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCC
Q 035831 313 ----SHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 313 ----s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
++|++.+.+|..+..+++|++|++++|+++.+ |..+. +.|+.|++++|++.++
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCEE
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCccc
Confidence 33445555555555555555555555555322 33222 4555555555555543
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.8e-34 Score=276.44 Aligned_cols=286 Identities=17% Similarity=0.212 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCC----CCCCCCCcccceecCCCC---CCCCCCcEEEEEcCCCCCcccCchhhcCC
Q 035831 67 LKKAYVALQAFKKSIYSDPFNTTANW----VDNTDVCSYNGVFCAPAL---DDPNITVVAGIDLNGNDIAGSFPAELGLL 139 (443)
Q Consensus 67 l~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~gv~c~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 139 (443)
+..+..+|.+||..+..|+..+...| ....++|.|.|+.|.... ......++++|+|++|+++ .+|..+.++
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l 103 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL 103 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGG
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhC
Confidence 34567789999998888888888899 456788999999995210 0112367899999999999 778889999
Q ss_pred CCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccC
Q 035831 140 TDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNN 219 (443)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~ 219 (443)
++|++|+|++|++..++..+.++++|++|+|++|+++ .+|..+.++++|++|++++|++.+.+|..+....
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-------- 174 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD-------- 174 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC--------
T ss_pred CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc--------
Confidence 9999999999999965558999999999999999999 7888999999999999999988888887664310
Q ss_pred CcccccCCccc-cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCc
Q 035831 220 NRFSYSIPEKL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVP 298 (443)
Q Consensus 220 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 298 (443)
....+ +..+|++|++++|+++ .+|..++++++|++|++++|+++ .++..+..+++|++|++++|.+.+.+|
T Consensus 175 ------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 175 ------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp -------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred ------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH
Confidence 00111 2245666666666665 56666777777777777777777 355567777777777777777777777
Q ss_pred hhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 299 QSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 299 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
..+..+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|..+..+++++.+++..|.+..+..
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence 777777777777777777777777777777777777777777777777777777777777777666655443
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-33 Score=290.61 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=114.1
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc--CccccCCCCCccEEEeeCCcCCcCCch-hccCCCCCce
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC--FPSEIGSLKNLRVFDVSSNLFHGNVPQ-SFSSLESIQT 309 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~ 309 (443)
.+|++|++++|++.+..+..++++++|++|++++|++++. ++..+..+++|++|++++|++++.+|. .+..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 4577777777777777777777777788888888877742 245677777888888888887763443 4667778888
Q ss_pred EEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccccccc----CCCCccCCC
Q 035831 310 LILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANT----CEPVVSNPV 385 (443)
Q Consensus 310 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~----~~~~~~np~ 385 (443)
|++++|++++..+..+. ++|++|++++|+|+.+++. +..++.|+.|++++|+|+++|...+... ...+.+|||
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 88888887765554433 6889999999999865444 4488999999999999999987633321 124678999
Q ss_pred CCCCCC
Q 035831 386 DCSRDM 391 (443)
Q Consensus 386 ~c~~~~ 391 (443)
.|+|+.
T Consensus 510 ~c~c~~ 515 (562)
T 3a79_B 510 DCTCPG 515 (562)
T ss_dssp CCCHHH
T ss_pred CCCcch
Confidence 999854
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-33 Score=302.10 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=239.7
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCCCCC-----CCC--Ccc------------cceecCCCCCCCCCCcEEEEEcCCC
Q 035831 66 RLKKAYVALQAFKKSIYSDPFNTTANWVDN-----TDV--CSY------------NGVFCAPALDDPNITVVAGIDLNGN 126 (443)
Q Consensus 66 ~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~-----~~~--c~~------------~gv~c~~~~~~~~l~~L~~L~Ls~n 126 (443)
...++..||.++|+++. ++ +|..+ .++ |.| .||+|... .+|+.|+|+++
T Consensus 266 ~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~~ 333 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAGF 333 (876)
T ss_dssp HHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTTT
T ss_pred cchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECccC
Confidence 44678999999999983 43 55432 255 999 99999752 67999999999
Q ss_pred CCcccCchhhcCCCCCCEEEc-cCCcCCcc--------------------------------------------------
Q 035831 127 DIAGSFPAELGLLTDLALFHV-NSNRFCGI-------------------------------------------------- 155 (443)
Q Consensus 127 ~l~~~~~~~~~~l~~L~~L~L-~~n~i~~~-------------------------------------------------- 155 (443)
++.|.+|..|+++++|++|+| ++|.+.+.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 77754322
Q ss_pred --------------------------CC-CccCCCCCCEEEccCCcCcc-----------------cCCcccC--CCCCC
Q 035831 156 --------------------------IP-DFSDWKLMFEFDVSNNRLVG-----------------SFPRVVL--SWPSL 189 (443)
Q Consensus 156 --------------------------~~-~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~--~l~~L 189 (443)
+| .|+++++|++|+|++|++++ .+|..++ ++++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 34 78899999999999999998 3888887 99999
Q ss_pred cEEecccccCCCCCCCcccCC-CCCEEEccCCc-ccc-cCCccccC--------CccceeeeccCCCCCccch--hhhcC
Q 035831 190 KFLDLRYNNFEGELPCDLFDM-KLDALFLNNNR-FSY-SIPEKLGR--------STVSVVTFAHNNFNGCIPR--SIGNM 256 (443)
Q Consensus 190 ~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~--------~~L~~L~L~~n~l~~~~~~--~l~~l 256 (443)
++|+|++|.+.+.+|..+..+ +|++|++++|+ +++ .+|..++. .+|++|++++|++. .+|. .++++
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 999999999999999888886 99999999998 887 77776644 37999999999999 7887 89999
Q ss_pred CcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCC-CceEEcccccCCccCchhhcCCCC--CCE
Q 035831 257 QNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLES-IQTLILSHNQLTGFVSEQICKLPS--LSN 333 (443)
Q Consensus 257 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~~--L~~ 333 (443)
++|++|+|++|+++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++ .+|..+..+.. |+.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 99999999999999 788 8999999999999999999 88888999998 999999999998 56677766544 888
Q ss_pred EEecCCcCCCCCCCCC---C--CCCcCceeeCCCCCCCCCcccc
Q 035831 334 FTFSYNYFQGLGNECI---P--GSKVNSAFDDASNCLAERPSQK 372 (443)
Q Consensus 334 L~Ls~N~l~~~~~~~~---~--~~~~L~~L~l~~N~l~~~p~~~ 372 (443)
|++++|++++.++... . ...+|+.|++++|.|+.+|...
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH
Confidence 8888888887655322 1 2235666777777666666543
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-32 Score=294.81 Aligned_cols=304 Identities=15% Similarity=0.149 Sum_probs=191.0
Q ss_pred HHHHHHhhhcCCCCC---CCCCCCCCcccCCCcccccchh-HHH--HHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccc
Q 035831 30 AAFITRRQLLTLPKD---GKLPDNFDDEYGLKNKTFANER-LKK--AYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNG 103 (443)
Q Consensus 30 ~~~~~~l~~l~l~~~---~~~P~~~~~~~~l~~l~~~~~~-l~~--~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~g 103 (443)
|..+.+|+.|++++| +.+|..|.++.+|+.|++++|+ +.. .+..+..+....
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~---------------------- 544 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE---------------------- 544 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT----------------------
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcc----------------------
Confidence 338999999999998 8899999999999999999997 643 444444443111
Q ss_pred eecCCCCCCCCCCcEEEEEcCCCCCcccCch--hhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCc
Q 035831 104 VFCAPALDDPNITVVAGIDLNGNDIAGSFPA--ELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPR 181 (443)
Q Consensus 104 v~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 181 (443)
..+++|+.|+|++|.++ .+|. .|+++++|++|+|++|++..++ .|..+++|++|+|++|+++ .+|.
T Consensus 545 ---------~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~ 612 (876)
T 4ecn_A 545 ---------DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPE 612 (876)
T ss_dssp ---------TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCT
T ss_pred ---------cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchH
Confidence 12345666666666666 5555 6666666666666666666433 6666666666666666666 5666
Q ss_pred ccCCCCC-CcEEecccccCCCCCCCcccCC---CCCEEEccCCcccccCCccc------cCCccceeeeccCCCCCccch
Q 035831 182 VVLSWPS-LKFLDLRYNNFEGELPCDLFDM---KLDALFLNNNRFSYSIPEKL------GRSTVSVVTFAHNNFNGCIPR 251 (443)
Q Consensus 182 ~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~ 251 (443)
.+..+++ |++|+|++|.++ .+|..+... +|++|++++|++.+.++... ...+|+.|++++|++......
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~ 691 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691 (876)
T ss_dssp TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH
T ss_pred HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH
Confidence 6666666 666666666666 566555443 36666666666665544322 123566666666666633223
Q ss_pred hhhcCCcCceeeccCcccCccCccccCCC--------CCccEEEeeCCcCCcCCchhcc--CCCCCceEEcccccCCccC
Q 035831 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSL--------KNLRVFDVSSNLFHGNVPQSFS--SLESIQTLILSHNQLTGFV 321 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~ 321 (443)
.+..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 3345666666666666666 444433222 26666666666666 4555554 66666666666666665 4
Q ss_pred chhhcCCCCCCEEEecC------CcCCCCCCCCCCCCCcCceeeCCCCCCCCCccc
Q 035831 322 SEQICKLPSLSNFTFSY------NYFQGLGNECIPGSKVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 322 ~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~ 371 (443)
|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|.|..+|..
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence 55566666666666654 555666666666666666666666666555554
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=286.71 Aligned_cols=270 Identities=20% Similarity=0.206 Sum_probs=181.4
Q ss_pred CCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCcc-CC-CccCCCCCCEEEccCCcCcccCCcccCCCCCC-
Q 035831 113 PNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGI-IP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSL- 189 (443)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L- 189 (443)
.++++|++|+|++|.++ .+|.. .+++|++|++++|+++++ .+ .|+++++|++|++++|++++ ..+..+++|
T Consensus 66 ~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~ 139 (520)
T 2z7x_B 66 KFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLN 139 (520)
T ss_dssp TTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSC
T ss_pred hcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccce
Confidence 35567888888888887 44544 778888888888888774 34 77888888888888887764 234444444
Q ss_pred -cEEecccccC--CCCCCCcccC---------------------------------------------------------
Q 035831 190 -KFLDLRYNNF--EGELPCDLFD--------------------------------------------------------- 209 (443)
Q Consensus 190 -~~L~L~~n~l--~~~~~~~~~~--------------------------------------------------------- 209 (443)
++|++++|.+ .+..|..+..
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l 219 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGC
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccc
Confidence 6666666655 3333332221
Q ss_pred ---------------------------CCCCEEEccCCcccccCCccc--------------------------------
Q 035831 210 ---------------------------MKLDALFLNNNRFSYSIPEKL-------------------------------- 230 (443)
Q Consensus 210 ---------------------------~~L~~L~L~~n~l~~~~~~~~-------------------------------- 230 (443)
.+|++|++++|++++.+|..+
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~ 299 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence 145666666666655554433
Q ss_pred ----------------------cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc--cCccccCCCCCccEE
Q 035831 231 ----------------------GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG--CFPSEIGSLKNLRVF 286 (443)
Q Consensus 231 ----------------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L 286 (443)
...+|++|++++|++.+..+..++++++|++|++++|++++ .+|..++.+++|++|
T Consensus 300 ~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 22456777777777776667777777777777777777774 345567777777777
Q ss_pred EeeCCcCCcCCch-hccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCC
Q 035831 287 DVSSNLFHGNVPQ-SFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 287 ~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l 365 (443)
++++|++++.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+|+.+ |..+..+++|+.|++++|+|
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcC
Confidence 7777777764444 366677777777777777766555443 6788888888888854 44455888999999999999
Q ss_pred CCCcccccccc----CCCCccCCCCCCCCC
Q 035831 366 AERPSQKWANT----CEPVVSNPVDCSRDM 391 (443)
Q Consensus 366 ~~~p~~~~~~~----~~~~~~np~~c~~~~ 391 (443)
+.+|...+... ...+.+|++.|+|..
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 98887633321 124568999998863
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-33 Score=291.13 Aligned_cols=308 Identities=16% Similarity=0.151 Sum_probs=265.8
Q ss_pred ccChHHHHHHH--HhhhcCCCCC--CCCC-CCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 035831 24 ALSDAEAAFIT--RRQLLTLPKD--GKLP-DNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDV 98 (443)
Q Consensus 24 ~~~~~~~~~~~--~l~~l~l~~~--~~~P-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~ 98 (443)
.+++..+..+. +|+.|++++| ..++ ..|.++.+|++|++++|++.. ..
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------lp----- 294 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE----------------------LP----- 294 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC----------------------CC-----
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC----------------------CC-----
Confidence 34455555555 6888999988 4454 568899999999998776420 00
Q ss_pred CcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcCc
Q 035831 99 CSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRLV 176 (443)
Q Consensus 99 c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l~ 176 (443)
..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+ .+..+++|++|++++|.++
T Consensus 295 -----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 295 -----------SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp -----------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred -----------hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 012345789999999999998888899999999999999999986554 6999999999999999998
Q ss_pred ccC--CcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCcc-cc-CCccceeeeccCCCCCccch
Q 035831 177 GSF--PRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEK-LG-RSTVSVVTFAHNNFNGCIPR 251 (443)
Q Consensus 177 ~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~ 251 (443)
+.. +..+..+++|++|++++|.+.+..+..+... +|++|++++|++.+..+.. +. ..+|++|++++|.+.+..+.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 765 7789999999999999999997777777765 9999999999998776654 43 47899999999999998999
Q ss_pred hhhcCCcCceeeccCcccCcc---CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCC
Q 035831 252 SIGNMQNLNEIILSDNKLSGC---FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKL 328 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 328 (443)
.++++++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+.++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 999999999999999999862 33568899999999999999998889999999999999999999999999999999
Q ss_pred CCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 329 PSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 329 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
++| +|++++|++++.++..+..++.|+.+++++|++.+-..
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999 99999999999999888899999999999999987554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=281.60 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=139.2
Q ss_pred CCCEEEccCCcccccCCccccC-CccceeeeccCCCCC--ccchhhhcCCcCceeeccCcccCccCcc-ccCCCCCccEE
Q 035831 211 KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNG--CIPRSIGNMQNLNEIILSDNKLSGCFPS-EIGSLKNLRVF 286 (443)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L 286 (443)
+|++|++++|++++.++..++. .+|++|++++|++.+ .++..++++++|++|++++|.+++.+|. .+..+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 8999999999999878877755 789999999999997 5667899999999999999999975665 48889999999
Q ss_pred EeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCC
Q 035831 287 DVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLA 366 (443)
Q Consensus 287 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~ 366 (443)
++++|++++..+..+. ++|++|++++|+|+ .+|..+..+++|++|++++|+|+++++..+..+++|+.|++++|+++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 9999999887776664 79999999999999 56666779999999999999999877667899999999999999999
Q ss_pred CCcc
Q 035831 367 ERPS 370 (443)
Q Consensus 367 ~~p~ 370 (443)
+-..
T Consensus 482 c~c~ 485 (520)
T 2z7x_B 482 CSCP 485 (520)
T ss_dssp CCHH
T ss_pred ccCC
Confidence 8654
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=281.65 Aligned_cols=139 Identities=21% Similarity=0.251 Sum_probs=109.1
Q ss_pred hhcCCcCceeeccCcccCccCc-cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCC-ccCchhhcCCCC
Q 035831 253 IGNMQNLNEIILSDNKLSGCFP-SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLT-GFVSEQICKLPS 330 (443)
Q Consensus 253 l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~ 330 (443)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4444455555555555554333 35677788888888888888777888888899999999999987 567888999999
Q ss_pred CCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC----CCCccCCCCCCCCC
Q 035831 331 LSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC----EPVVSNPVDCSRDM 391 (443)
Q Consensus 331 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~----~~~~~np~~c~~~~ 391 (443)
|++|++++|++++..+..+..+++|+.|++++|.+++++...+.... ..+.+|++.|+|+.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999899999999999999999999998876554322 24678999999875
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=269.80 Aligned_cols=268 Identities=17% Similarity=0.138 Sum_probs=174.5
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEE
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 192 (443)
++++|++|+|++|.+++..+..|+++++|++|++++|+++.+++ .|.++++|++|++++|++++..+..+..+++|++|
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 44566666666666666666666666666777776666666655 45666666677776666666556666666666666
Q ss_pred ecccccCCCCCCCcc----------------c-CCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhc
Q 035831 193 DLRYNNFEGELPCDL----------------F-DMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGN 255 (443)
Q Consensus 193 ~L~~n~l~~~~~~~~----------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 255 (443)
++++|.+++.....+ . ..+|++|++++|.+... +.. ...+|++|++++|.+.+. ..+..
T Consensus 171 ~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~~-~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 171 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGP-VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-ECC-CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred ECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeec-ccc-ccccccEEECCCCCCccc--HHHcC
Confidence 666666663211100 0 11455566666655532 221 125677888888887754 46777
Q ss_pred CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEE
Q 035831 256 MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFT 335 (443)
Q Consensus 256 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 335 (443)
+++|++|++++|.+++..+..+..+++|++|++++|++++ ++..+..+++|++|++++|++.+ ++..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEE
Confidence 8888888888888887777778888888888888888874 45556677888888888888874 455567778888888
Q ss_pred ecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC--CCCccCCCCCCCC
Q 035831 336 FSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC--EPVVSNPVDCSRD 390 (443)
Q Consensus 336 Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~--~~~~~np~~c~~~ 390 (443)
+++|+|+++. +..++.|+.|++++|++.+.....+.... .....++..|.++
T Consensus 325 L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 325 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCccceeC---chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccc
Confidence 8888887763 55667788888888887764433332211 2233455556543
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.3e-31 Score=258.27 Aligned_cols=243 Identities=19% Similarity=0.216 Sum_probs=140.3
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
+++.|++++|.+++..+..|.++++|++|++++|+++++.+ .|.++++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 45566666666665555566666666666666666666555 5666666666666666665 3343333 566666666
Q ss_pred cccCCCCCCCcccCC-CCCEEEccCCcccc--cCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc
Q 035831 196 YNNFEGELPCDLFDM-KLDALFLNNNRFSY--SIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
+|.+++..+..+... +|++|++++|.++. ..+..+...+|++|++++|++.+ +|..+. ++|++|++++|.+++.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc
Confidence 666663222223333 66666666666642 34444444466666666666654 333222 4566666666666655
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCC
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGS 352 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 352 (443)
.+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+|+++.+..+...
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 5555666666666666666666555555666666666666666666 344456666666666666666666655554432
Q ss_pred ------CcCceeeCCCCCCC
Q 035831 353 ------KVNSAFDDASNCLA 366 (443)
Q Consensus 353 ------~~L~~L~l~~N~l~ 366 (443)
..++.+++.+|++.
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccceEeecCccc
Confidence 34556666666655
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.6e-31 Score=256.01 Aligned_cols=243 Identities=19% Similarity=0.212 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
.++.|+|++|++++..+..|+++++|++|++++|+++++.+ .|.++++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 34444555555444444444445555555555555544433 4444455555555555444 2332222 344555555
Q ss_pred cccCCCCCCCcccCC-CCCEEEccCCcccc--cCCcccc-CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 196 YNNFEGELPCDLFDM-KLDALFLNNNRFSY--SIPEKLG-RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~--~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
+|.+++..+..+... +|++|++++|.+.. ..+..+. ..+|++|++++|++.+ ++..+. ++|++|++++|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 554442222222222 44555555544431 2222222 2344555555554442 222221 445555555555544
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPG 351 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 351 (443)
..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+|+++.+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 44444445555555555555554444444444455555555555544 33344444455555555555555444443322
Q ss_pred C------CcCceeeCCCCCCC
Q 035831 352 S------KVNSAFDDASNCLA 366 (443)
Q Consensus 352 ~------~~L~~L~l~~N~l~ 366 (443)
. ..++.+++++|++.
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSC
T ss_pred cccccccccccceEeecCccc
Confidence 1 33444555555443
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=289.41 Aligned_cols=301 Identities=17% Similarity=0.155 Sum_probs=170.0
Q ss_pred HHHHhhhcCCCCC---CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCC
Q 035831 32 FITRRQLLTLPKD---GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAP 108 (443)
Q Consensus 32 ~~~~l~~l~l~~~---~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~ 108 (443)
...+++.|++++| +..|..|.++..|++|++++|.... ...
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~------------------------------------~i~ 65 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL------------------------------------TID 65 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC------------------------------------EEC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc------------------------------------ccC
Confidence 3467888888888 3446888888889988887663100 000
Q ss_pred CCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC---CccCCCCCCEEEccCCcCcccCC-cccC
Q 035831 109 ALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP---DFSDWKLMFEFDVSNNRLVGSFP-RVVL 184 (443)
Q Consensus 109 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~l~ 184 (443)
...+.++++|++|+|++|.+++..|..|+++++|++|+|++|++.+..+ .|.++++|++|+|++|.+++..+ ..|.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 0123445667777777777776667777777777777777777766433 36677777777777777765443 4566
Q ss_pred CCCCCcEEecccccCCCCCCCcccC---CCCCEEEccCCcccccCCccccC-------CccceeeeccCCCCCccchhhh
Q 035831 185 SWPSLKFLDLRYNNFEGELPCDLFD---MKLDALFLNNNRFSYSIPEKLGR-------STVSVVTFAHNNFNGCIPRSIG 254 (443)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~l~ 254 (443)
++++|++|+|++|.+++..+..+.. .+|+.|++++|.+.+..+..++. ..|++|++++|.+.+..+..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 7777777777777766555544433 24555555555554444333221 1245555555544333222211
Q ss_pred c--------------------------------------CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcC
Q 035831 255 N--------------------------------------MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN 296 (443)
Q Consensus 255 ~--------------------------------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 296 (443)
. ..+|++|++++|.+.+..+..+..+++|+.|+|++|++++.
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 1 13455555555555544455555555555555555555544
Q ss_pred CchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCC
Q 035831 297 VPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 297 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
.+..|.++++|++|+|++|.+++..+..|..+++|+.|++++|+++++.+..+..+++|+.|++++|.++++
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 455555555555555555555555455555555555555555555555555555555555555555554443
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1e-31 Score=279.93 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=91.5
Q ss_pred hhhhcCCcCceeeccCcccCccCc-cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCc-cCchhhcCC
Q 035831 251 RSIGNMQNLNEIILSDNKLSGCFP-SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTG-FVSEQICKL 328 (443)
Q Consensus 251 ~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l 328 (443)
..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .++..+..+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 445555566666666666655544 466677777777777777777777777778888888888888876 367778888
Q ss_pred CCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccccc
Q 035831 329 PSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWA 374 (443)
Q Consensus 329 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~ 374 (443)
++|++|++++|++++..+..+..+++|+.|++++|.++++.+..+.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 8888888888888888888888888888888888888887554443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=2.6e-31 Score=277.62 Aligned_cols=321 Identities=18% Similarity=0.190 Sum_probs=231.9
Q ss_pred HHhhhcCCCCC--CCCC-CCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCC
Q 035831 34 TRRQLLTLPKD--GKLP-DNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPAL 110 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~P-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~ 110 (443)
..++.|+++.| ..+| .+|.++.+|++|++++|++.. + +..
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-----------i--------------------------~~~ 94 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----------I--------------------------EDG 94 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-----------E--------------------------CTT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-----------c--------------------------Chh
Confidence 35788888888 5555 678888888888888776421 0 111
Q ss_pred CCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcc-cCCcccCCCCC
Q 035831 111 DDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVG-SFPRVVLSWPS 188 (443)
Q Consensus 111 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~ 188 (443)
.|.++++|++|+|++|+|++..+..|.++++|++|+|++|+++++.+ .|+++++|++|+|++|++++ ..+..+..+++
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 34456778888888888887767778888888888888888888777 68888888888888888764 35667777888
Q ss_pred CcEEecccccCCCCCCCcccC-----------------------------------------------------------
Q 035831 189 LKFLDLRYNNFEGELPCDLFD----------------------------------------------------------- 209 (443)
Q Consensus 189 L~~L~L~~n~l~~~~~~~~~~----------------------------------------------------------- 209 (443)
|++|++++|++++..+..+..
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 888888887765322211100
Q ss_pred -------------------------------------------------------------------------CCCCEEE
Q 035831 210 -------------------------------------------------------------------------MKLDALF 216 (443)
Q Consensus 210 -------------------------------------------------------------------------~~L~~L~ 216 (443)
..++.|+
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 334 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhh
Confidence 0122333
Q ss_pred ccCCcccccCCc--------------------cccCCccceeeeccCCCC------------------------------
Q 035831 217 LNNNRFSYSIPE--------------------KLGRSTVSVVTFAHNNFN------------------------------ 246 (443)
Q Consensus 217 L~~n~l~~~~~~--------------------~~~~~~L~~L~L~~n~l~------------------------------ 246 (443)
+.+|.+...... .....+++.+++++|.+.
T Consensus 335 l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~ 414 (635)
T 4g8a_A 335 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS 414 (635)
T ss_dssp EESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS
T ss_pred cccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc
Confidence 333322211000 001123444444444331
Q ss_pred -------------------Cc-cchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCC-cCCchhccCCC
Q 035831 247 -------------------GC-IPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFH-GNVPQSFSSLE 305 (443)
Q Consensus 247 -------------------~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~ 305 (443)
.. ....+..+.+++.+++++|.+.+..+..+..++.|+.|++++|.+. +..|..|..++
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 11 1234566778888888888888778888888999999999999754 45678899999
Q ss_pred CCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC-----CCC
Q 035831 306 SIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC-----EPV 380 (443)
Q Consensus 306 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~-----~~~ 380 (443)
+|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..+..+++|+.|++++|+|++++...+.... ..+
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999887665432 246
Q ss_pred ccCCCCCCCCC
Q 035831 381 VSNPVDCSRDM 391 (443)
Q Consensus 381 ~~np~~c~~~~ 391 (443)
.+|||.|+|..
T Consensus 575 ~~Np~~C~C~~ 585 (635)
T 4g8a_A 575 TQNDFACTCEH 585 (635)
T ss_dssp TTCCBCCSGGG
T ss_pred eCCCCcccCCc
Confidence 79999999964
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.3e-31 Score=276.60 Aligned_cols=315 Identities=14% Similarity=0.159 Sum_probs=242.9
Q ss_pred HHhhhcCCCCC--CCCC-CCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcccceecCCC
Q 035831 34 TRRQLLTLPKD--GKLP-DNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWV-DNTDVCSYNGVFCAPA 109 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~P-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~~c~~~gv~c~~~ 109 (443)
.+++.|++++| ..+| ..|.++.+|++|++++|++.... .+....+.... -....+.... .+.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~---lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-----------FHVFLFNQDLEYLDVSHNRLQN---ISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-----------TTTTTTCTTCCEEECTTSCCCE---ECS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-----------HHHhCCCCCCCEEECCCCcCCc---cCc
Confidence 68999999999 5555 78999999999999998853210 01011111111 0011222222 222
Q ss_pred CCCCCCCcEEEEEcCCCCCccc-CchhhcCCCCCCEEEccCCcCCccCCCccCCCCC--CEEEccCCcC--cccCCcccC
Q 035831 110 LDDPNITVVAGIDLNGNDIAGS-FPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLM--FEFDVSNNRL--VGSFPRVVL 184 (443)
Q Consensus 110 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~ 184 (443)
. .+++|++|++++|.+++. .|..|+++++|++|++++|++.+. .+..+++| ++|++++|.+ ++..+..+.
T Consensus 118 ~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 118 C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccccc
Confidence 1 578899999999999863 468899999999999999998764 45555555 9999999888 655555554
Q ss_pred CCC-----------------------------------------------------------------------------
Q 035831 185 SWP----------------------------------------------------------------------------- 187 (443)
Q Consensus 185 ~l~----------------------------------------------------------------------------- 187 (443)
.+.
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 433
Q ss_pred ----CCcEEecccccCCCCCCCcc-----------------------------------------------------cC-
Q 035831 188 ----SLKFLDLRYNNFEGELPCDL-----------------------------------------------------FD- 209 (443)
Q Consensus 188 ----~L~~L~L~~n~l~~~~~~~~-----------------------------------------------------~~- 209 (443)
+|++|++++|.+++.+|..+ ..
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l 352 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC
Confidence 67788888888887777655 22
Q ss_pred CCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCc--cchhhhcCCcCceeeccCcccCccCcc-ccCCCCCccE
Q 035831 210 MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGC--IPRSIGNMQNLNEIILSDNKLSGCFPS-EIGSLKNLRV 285 (443)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~ 285 (443)
.+|++|++++|++++..+..++. .+|++|++++|++.+. ++..++++++|++|++++|++++.+|. .+..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 38999999999999878877755 7899999999999973 456789999999999999999974554 5888999999
Q ss_pred EEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCC
Q 035831 286 FDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 286 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l 365 (443)
|++++|++++..+..+. ++|++|++++|+|+. +|..+..+++|++|++++|+++++++..+..++.|+.|++++|++
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 99999999877666554 689999999999994 555566999999999999999987776689999999999999999
Q ss_pred CCCcc
Q 035831 366 AERPS 370 (443)
Q Consensus 366 ~~~p~ 370 (443)
.+-..
T Consensus 510 ~c~c~ 514 (562)
T 3a79_B 510 DCTCP 514 (562)
T ss_dssp CCCHH
T ss_pred CCCcc
Confidence 87544
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.4e-31 Score=275.58 Aligned_cols=155 Identities=24% Similarity=0.256 Sum_probs=86.7
Q ss_pred CccceeeeccCCCCCccch---hhhcCCcCceeeccCcccCccCc--cccCCCCCccEEEeeCCcCCcCCchhccCCCCC
Q 035831 233 STVSVVTFAHNNFNGCIPR---SIGNMQNLNEIILSDNKLSGCFP--SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESI 307 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 307 (443)
.+|++|++++|++.+.++. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 3455555555555544322 24445555555555555542211 23455555566666666555 445555555555
Q ss_pred ceEEcccccCCccCch-----------------hhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 308 QTLILSHNQLTGFVSE-----------------QICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 308 ~~L~Ls~N~l~~~~~~-----------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
++|++++|++++.... .+..+++|++|++++|+|+.++. ...++.|+.|++++|.|++++.
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCT
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCH
Confidence 5555555555422111 01256677777777777775432 3456778888888888888776
Q ss_pred ccccccC----CCCccCCCCCCCC
Q 035831 371 QKWANTC----EPVVSNPVDCSRD 390 (443)
Q Consensus 371 ~~~~~~~----~~~~~np~~c~~~ 390 (443)
..+.... ..+.+|++.|+|+
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCcccCEEEecCCCccCCCc
Confidence 5443322 2467899999986
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.6e-32 Score=290.64 Aligned_cols=305 Identities=17% Similarity=0.204 Sum_probs=238.1
Q ss_pred ccChHHHHHHHHhhhcCCCCC---CCC-CCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 035831 24 ALSDAEAAFITRRQLLTLPKD---GKL-PDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVC 99 (443)
Q Consensus 24 ~~~~~~~~~~~~l~~l~l~~~---~~~-P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c 99 (443)
.+.+.+|..+.+|++|++++| +.+ |..|.++.+|++|++++|++... .|
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-------------~p-------------- 90 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-------------HP-------------- 90 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-------------CT--------------
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-------------CH--------------
Confidence 344678889999999999999 344 78899999999999988774210 00
Q ss_pred cccceecCCCCCCCCCCcEEEEEcCCCCCcccCchh--hcCCCCCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcC
Q 035831 100 SYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAE--LGLLTDLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRL 175 (443)
Q Consensus 100 ~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l 175 (443)
..+.++++|++|+|++|.+++.++.. |+++++|++|+|++|++.+..+ .|+++++|++|+|++|.+
T Consensus 91 ----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 91 ----------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ----------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ----------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 12334567888888888888766554 7888888888888888877654 578888888888888888
Q ss_pred cccCCcccCCC--CCCcEEecccccCCCCCCCcccCC-------CCCEEEccCCcccccCCcccc---------------
Q 035831 176 VGSFPRVVLSW--PSLKFLDLRYNNFEGELPCDLFDM-------KLDALFLNNNRFSYSIPEKLG--------------- 231 (443)
Q Consensus 176 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~--------------- 231 (443)
++..+..+..+ ++|++|++++|.+.+..+..+... .|++|++++|.+++..+..+.
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 87777777766 778888888888877666554432 478888888876654443321
Q ss_pred ------------------------CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEE
Q 035831 232 ------------------------RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFD 287 (443)
Q Consensus 232 ------------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 287 (443)
..++++|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 14688999999999888888889999999999999999988888899999999999
Q ss_pred eeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 288 VSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 288 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
|++|++++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++++.. +++|+.+++++|.++.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVT 395 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCccc
Confidence 99999988878889999999999999999988888888889999999999999886532 5566666666666666
Q ss_pred Ccc
Q 035831 368 RPS 370 (443)
Q Consensus 368 ~p~ 370 (443)
+|.
T Consensus 396 l~~ 398 (844)
T 3j0a_A 396 LPK 398 (844)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.6e-32 Score=258.73 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=222.9
Q ss_pred CCCCEEEccCCcCCc--cCC-CccCCCCCCEEEccC-CcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCE
Q 035831 140 TDLALFHVNSNRFCG--IIP-DFSDWKLMFEFDVSN-NRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDA 214 (443)
Q Consensus 140 ~~L~~L~L~~n~i~~--~~~-~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~ 214 (443)
.+++.|+|++|++.+ ..+ .|.++++|++|++++ |.+.+.+|..|.++++|++|+|++|.+++.+|..+... +|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 666 999999999999995 99999999999999999999999999998999988876 9999
Q ss_pred EEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCC-cCceeeccCcccCccCccccCCCCCccEEEeeCCc
Q 035831 215 LFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQ-NLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNL 292 (443)
Q Consensus 215 L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 292 (443)
|++++|.+++.+|..+.. .+|++|++++|++.+.+|..+..+. +|++|++++|++++.+|..+..+. |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999989988865 8899999999999999999999998 999999999999999999999987 9999999999
Q ss_pred CCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC-Cccc
Q 035831 293 FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE-RPSQ 371 (443)
Q Consensus 293 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~-~p~~ 371 (443)
+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|+|++..|..+..++.|+.|++++|.+++ +|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999977665 8889999999999999999999999999999999999999985 5543
Q ss_pred c-ccc-cCCCCccCCCCCCC
Q 035831 372 K-WAN-TCEPVVSNPVDCSR 389 (443)
Q Consensus 372 ~-~~~-~~~~~~~np~~c~~ 389 (443)
. ... ....+.+|++.|..
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 1 111 12345678877753
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.9e-32 Score=279.47 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=126.7
Q ss_pred CccceeeeccCCCCCccc-hhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCC-cCCchhccCCCCCceE
Q 035831 233 STVSVVTFAHNNFNGCIP-RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFH-GNVPQSFSSLESIQTL 310 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L 310 (443)
.+|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 568888888888876655 56889999999999999999889999999999999999999997 5788999999999999
Q ss_pred EcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 311 ILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 311 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
++++|++++..+..+..+++|++|++++|++++.++..+..+++|+.|++++|++++..+
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999999999989999999999999999999999999999999999999999999998554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-31 Score=261.45 Aligned_cols=272 Identities=17% Similarity=0.178 Sum_probs=186.2
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEE
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 192 (443)
.+.+++.|+++++.++...+..|..+++|++|++++|++.++.+ .|..+++|++|+|++|++++..+..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35677788888888776555557778888888888888887776 77888888888888888877777777788888888
Q ss_pred ecccccCCCCCCCcc-cCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcC-------------
Q 035831 193 DLRYNNFEGELPCDL-FDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNM------------- 256 (443)
Q Consensus 193 ~L~~n~l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l------------- 256 (443)
++++|.++ .++..+ ... +|++|++++|.+.+..+..+.. .+|++|++++|++++.....+.++
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 88888887 555554 333 7888888888887666655544 667777777777765432222211
Q ss_pred ------------------------CcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEc
Q 035831 257 ------------------------QNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL 312 (443)
Q Consensus 257 ------------------------~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 312 (443)
.+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 2455555555555532 45666777777777777777666777777777777777
Q ss_pred ccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC-CCCccCCCCCCCC
Q 035831 313 SHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC-EPVVSNPVDCSRD 390 (443)
Q Consensus 313 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~-~~~~~np~~c~~~ 390 (443)
++|++++. +..+..+++|++|++++|+++++ +..+..++.|+.|++++|.|+.++........ ..+.+|++.|+|.
T Consensus 280 ~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 280 SNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhH
Confidence 77777753 44456677777777777777754 33355667777788888877777644333221 2456888888763
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-30 Score=249.35 Aligned_cols=249 Identities=18% Similarity=0.254 Sum_probs=221.7
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
+++.++++++.++ .+|..+. ++|++|++++|+++++.+ .|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4678889998888 5565553 689999999999999988 89999999999999999998889999999999999999
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCC--ccchhhhcCCcCceeeccCcccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNG--CIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
+|.++ .+|..++ .+|++|++++|.+++..+..+.. .+|++|++++|.+.. ..+..+.++++|++|++++|.++ .
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 99999 7777766 69999999999999666655544 789999999999964 66788999999999999999999 5
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCC
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGS 352 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 352 (443)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.+ |..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccC
Confidence 666553 8999999999999988889999999999999999999998888999999999999999999954 6678899
Q ss_pred CcCceeeCCCCCCCCCcccccc
Q 035831 353 KVNSAFDDASNCLAERPSQKWA 374 (443)
Q Consensus 353 ~~L~~L~l~~N~l~~~p~~~~~ 374 (443)
+.|+.|++++|.|++++...+.
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSS
T ss_pred CCcCEEECCCCcCCccChhhcC
Confidence 9999999999999999887663
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-31 Score=275.71 Aligned_cols=300 Identities=16% Similarity=0.179 Sum_probs=175.6
Q ss_pred CCCCCCCCCCCCCCCc----ccceecCCC-----------CCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccC
Q 035831 85 PFNTTANWVDNTDVCS----YNGVFCAPA-----------LDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNS 149 (443)
Q Consensus 85 ~~~~~~~w~~~~~~c~----~~gv~c~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 149 (443)
.+..+..|..+.++|. |.++.|... ...-.+.+++.+++++|.+....+..|.++++|++|+|++
T Consensus 5 ~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~ 84 (597)
T 3oja_B 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84 (597)
T ss_dssp ------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT
T ss_pred ccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC
Confidence 3445667875555553 555444311 0111345566666777666655555566666777777777
Q ss_pred CcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcc-cCC-CCCEEEccCCcccccC
Q 035831 150 NRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDL-FDM-KLDALFLNNNRFSYSI 226 (443)
Q Consensus 150 n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~ 226 (443)
|.+.++.+ .|..+++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|..+ ... +|++|++++|.+++..
T Consensus 85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 77666666 6666677777777777766666666666667777777777666 444443 333 6667777776666555
Q ss_pred CccccC-CccceeeeccCCCCCccchhhhcC-------------------------------------CcCceeeccCcc
Q 035831 227 PEKLGR-STVSVVTFAHNNFNGCIPRSIGNM-------------------------------------QNLNEIILSDNK 268 (443)
Q Consensus 227 ~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l-------------------------------------~~L~~L~Ls~n~ 268 (443)
+..++. .+|++|++++|.+.+.....+.++ .+|+.|++++|.
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC
T ss_pred hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC
Confidence 555543 556666666666654322222111 234455555555
Q ss_pred cCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCC
Q 035831 269 LSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNEC 348 (443)
Q Consensus 269 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 348 (443)
+++ +..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.+++. +..+..+++|+.|+|++|.++++ |..
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~ 319 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERN 319 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGG
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-Ccc
Confidence 543 24566666777777777777666666677777777777777777653 44455666777777777777654 334
Q ss_pred CCCCCcCceeeCCCCCCCCCccccccccC-CCCccCCCCCCC
Q 035831 349 IPGSKVNSAFDDASNCLAERPSQKWANTC-EPVVSNPVDCSR 389 (443)
Q Consensus 349 ~~~~~~L~~L~l~~N~l~~~p~~~~~~~~-~~~~~np~~c~~ 389 (443)
+..++.|+.|++++|.|.+++...+.... ..+.+|++.|+|
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChh
Confidence 55566677777777777666543332211 235577777765
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.1e-31 Score=276.42 Aligned_cols=319 Identities=17% Similarity=0.137 Sum_probs=177.5
Q ss_pred HHhhhcCCCCC--CCCC-CCCCcccCCCcccccchhHHHHH-HHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCC
Q 035831 34 TRRQLLTLPKD--GKLP-DNFDDEYGLKNKTFANERLKKAY-VALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPA 109 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~P-~~~~~~~~l~~l~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~ 109 (443)
.+++.|++++| ..+| ..|.++..|++|++++|++.... .++..++.. ...+ ...| .+.-.+.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------~~L~--L~~n---~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML---------KVLN--LQHN---ELSQLSD 90 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTC---------CEEE--CCSS---CCCCCCT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCc---------CEEE--CCCC---ccCccCh
Confidence 46677777776 4444 45667777777777666542210 011111100 0000 0011 1111222
Q ss_pred CCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccC--CC
Q 035831 110 LDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVL--SW 186 (443)
Q Consensus 110 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l 186 (443)
..+.++++|++|+|++|.+++..+..|+++++|++|++++|++.+..+ .+.++++|++|++++|.+++..+..+. .+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 234566777778888877776666777777788888888887777766 677777788888887777766555443 45
Q ss_pred CCCcEEecccccCCCCCCCcccC----------------------------CCCCEEEccCCcccccCCccccC---Ccc
Q 035831 187 PSLKFLDLRYNNFEGELPCDLFD----------------------------MKLDALFLNNNRFSYSIPEKLGR---STV 235 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~~~~---~~L 235 (443)
++|++|++++|.+++..+..+.. .+|++|++++|.+.+..+..+.. .+|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 67777777777777554443321 24566666666666555555543 236
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccC---------------------------------CCCC
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIG---------------------------------SLKN 282 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---------------------------------~l~~ 282 (443)
++|++++|++.+..+..|+.+++|++|++++|.+++..+..+. .+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 7777777776666666666666777777777666655444444 4455
Q ss_pred ccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCc--cCchhhcC--CCCCCEEEecCCcCCCCCCCCCCCCCcCcee
Q 035831 283 LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTG--FVSEQICK--LPSLSNFTFSYNYFQGLGNECIPGSKVNSAF 358 (443)
Q Consensus 283 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L 358 (443)
|++|++++|.+.+..+..|.++++|++|++++|.+.. .....|.. .++|+.|++++|+++++.+..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 5555555666655555555555555555554443211 00011111 1233333334444444444555555555555
Q ss_pred eCCCCCCC
Q 035831 359 DDASNCLA 366 (443)
Q Consensus 359 ~l~~N~l~ 366 (443)
++++|.+.
T Consensus 411 ~L~~N~l~ 418 (680)
T 1ziw_A 411 DLGLNEIG 418 (680)
T ss_dssp ECCSSCCE
T ss_pred eCCCCcCc
Confidence 55555554
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=256.49 Aligned_cols=279 Identities=17% Similarity=0.178 Sum_probs=226.7
Q ss_pred CCCCCCCCCCcccceecCCCC-C-----CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCC
Q 035831 90 ANWVDNTDVCSYNGVFCAPAL-D-----DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDW 162 (443)
Q Consensus 90 ~~w~~~~~~c~~~gv~c~~~~-~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l 162 (443)
..|......|.|.|+ |.... . ..-.++|++|++++|++++..+..|.++++|++|++++|+++++.+ .|.++
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 345545667888877 44211 1 1123589999999999998877789999999999999999999987 89999
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCC--cccCC-CCCEEEccCCc-ccccCCccccC-Cccce
Q 035831 163 KLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPC--DLFDM-KLDALFLNNNR-FSYSIPEKLGR-STVSV 237 (443)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~-~L~~L~L~~n~-l~~~~~~~~~~-~~L~~ 237 (443)
++|++|++++|++++..+..+.++++|++|++++|+++ .++. .+... +|++|++++|. +.+..+..+.. .+|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 99999999999999766666999999999999999999 6665 44444 99999999994 66555556644 78999
Q ss_pred eeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhcc---CCCCCceEEccc
Q 035831 238 VTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFS---SLESIQTLILSH 314 (443)
Q Consensus 238 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~ 314 (443)
|++++|++.+..+..+.++++|++|++++|.++......+..+++|+.|++++|++++..+..+. ....++.+++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 99999999988899999999999999999999743333445689999999999999976554433 356788999999
Q ss_pred ccCCc----cCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 315 NQLTG----FVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 315 N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+.+.+ .+|..+..+++|++|++++|+++.++...+..+++|+.|++++|++.+.++
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99886 357788999999999999999998777777999999999999999998664
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.2e-30 Score=248.59 Aligned_cols=249 Identities=17% Similarity=0.280 Sum_probs=219.6
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
+++.+++++++++ .+|..+. ++|++|++++|++.++.+ .|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4678899999988 5666553 689999999999999988 89999999999999999998889999999999999999
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCcccc-CCccceeeeccCCCCC--ccchhhhcCCcCceeeccCcccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLG-RSTVSVVTFAHNNFNG--CIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
+|.++ .+|..++ .+|++|++++|++++..+..+. ..+|++|++++|.+.. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 99999 7887776 7999999999999966555554 4889999999999963 667778888 99999999999994
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCC
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGS 352 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 352 (443)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++.+ |..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcC
Confidence 666554 7999999999999988888999999999999999999998888999999999999999999854 6668899
Q ss_pred CcCceeeCCCCCCCCCccccccc
Q 035831 353 KVNSAFDDASNCLAERPSQKWAN 375 (443)
Q Consensus 353 ~~L~~L~l~~N~l~~~p~~~~~~ 375 (443)
+.|+.|++++|.|++++...+..
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSC
T ss_pred ccCCEEECCCCCCCccChhHccc
Confidence 99999999999999998766543
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-30 Score=252.28 Aligned_cols=286 Identities=16% Similarity=0.260 Sum_probs=137.4
Q ss_pred HHHHHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCccccee
Q 035831 28 AEAAFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVF 105 (443)
Q Consensus 28 ~~~~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~ 105 (443)
..+..+.+|+.|+++++ ..+| .|..+.+|++|+++++++.....
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~--------------------------------- 83 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP--------------------------------- 83 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---------------------------------
T ss_pred ccchhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh---------------------------------
Confidence 35678899999999998 5666 48889999999998877432110
Q ss_pred cCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCC
Q 035831 106 CAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLS 185 (443)
Q Consensus 106 c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 185 (443)
+..+++|++|++++|.+++. ..+.++++|++|++++|++.++.+ +..+++|++|++++|.....+ ..+..
T Consensus 84 ------~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~ 153 (347)
T 4fmz_A 84 ------LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSN 153 (347)
T ss_dssp ------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTT
T ss_pred ------hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhh
Confidence 11233445555555544431 234455555555555555444332 444455555555555333222 22444
Q ss_pred CCCCcEEecccccCCCCCCCcccC-CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeec
Q 035831 186 WPSLKFLDLRYNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIIL 264 (443)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 264 (443)
+++|++|++++|.+. .++. +.. .+|++|++++|.+.+ ++......+|+.|++++|.+.+..+ +..+++|++|++
T Consensus 154 l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 154 MTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence 445555555554444 2222 222 244555555444442 2222222444444444444443322 444444444444
Q ss_pred cCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 265 SDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 265 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
++|++++ ++. +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 229 ~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 229 GNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred cCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 4444442 221 44444444444444444421 2344444444444444444433 2344444444444444444444
Q ss_pred CCCCCCCCCcCceeeCCCCCCCCC
Q 035831 345 GNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
.+..+..+++|+.|++++|.++++
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCC
T ss_pred ChhHhhccccCCEEEccCCccccc
Confidence 444444444444444444444444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.2e-31 Score=272.94 Aligned_cols=267 Identities=16% Similarity=0.141 Sum_probs=193.7
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEE
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFL 192 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 192 (443)
++++|+.|+|++|.+++..+..|+++++|++|+|++|.++++++ .|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 44566666666666666666666666666666666666666655 45666666666666666666666666666666666
Q ss_pred ecccccCCCCCCCcc----------------c-CCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhc
Q 035831 193 DLRYNNFEGELPCDL----------------F-DMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGN 255 (443)
Q Consensus 193 ~L~~n~l~~~~~~~~----------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 255 (443)
++++|.+++.....+ . ..+|++|++++|.+... +..+ ..+|+.|++++|.+++. ..+..
T Consensus 177 ~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~-~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGPV-NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp ECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-ECSC-CSCCCEEECCSSCCCCC--GGGGG
T ss_pred ECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc-cccc-CCCCCEEECCCCCCCCC--hhhcc
Confidence 666666663211110 1 12566666666666532 2221 25799999999999864 67899
Q ss_pred CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEE
Q 035831 256 MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFT 335 (443)
Q Consensus 256 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 335 (443)
+++|++|+|++|.+++..|..|+.+++|+.|+|++|.+++ ++..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 9999999999999998889999999999999999999995 5777788999999999999999 4667788999999999
Q ss_pred ecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccCC--CCccCCCCCCC
Q 035831 336 FSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTCE--PVVSNPVDCSR 389 (443)
Q Consensus 336 Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~--~~~~np~~c~~ 389 (443)
+++|.|+++. +..++.|+.|++++|++.+.....|..... ...++...|..
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 9999998874 667789999999999998754433322222 23455556654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-29 Score=245.21 Aligned_cols=283 Identities=18% Similarity=0.271 Sum_probs=232.2
Q ss_pred HHHHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceec
Q 035831 29 EAAFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFC 106 (443)
Q Consensus 29 ~~~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c 106 (443)
.+..+.+|+.|++++| ..+|. |.++.+|++|++++|++.. ..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~----------------------~~------------- 104 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD----------------------IS------------- 104 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC----------------------CG-------------
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC----------------------ch-------------
Confidence 4788899999999998 56665 8889999999998776321 00
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCC
Q 035831 107 APALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSW 186 (443)
Q Consensus 107 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 186 (443)
.+.++++|++|++++|.+++. +. +..+++|++|++++|......+.+..+++|++|++++|.+.+..+ +..+
T Consensus 105 ----~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 105 ----ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp ----GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred ----HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccC
Confidence 123457899999999999854 33 889999999999999766666678999999999999999985443 8889
Q ss_pred CCCcEEecccccCCCCCCCcccC-CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeecc
Q 035831 187 PSLKFLDLRYNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILS 265 (443)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 265 (443)
++|++|++++|.+. .++. +.. .+|++|++++|.+.+..+ .....+|++|++++|++.+..+ +..+++|++|+++
T Consensus 177 ~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 177 TDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251 (347)
T ss_dssp TTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECC
Confidence 99999999999998 4554 333 499999999999985443 4455789999999999986544 8889999999999
Q ss_pred CcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCC
Q 035831 266 DNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+|.+++ + ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 252 ~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 252 TNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp SSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 999984 3 5688899999999999999854 46888999999999999999888889999999999999999999987
Q ss_pred CCCCCCCCcCceeeCCCCCCC
Q 035831 346 NECIPGSKVNSAFDDASNCLA 366 (443)
Q Consensus 346 ~~~~~~~~~L~~L~l~~N~l~ 366 (443)
+ +..++.|+.|++++|.|+
T Consensus 328 ~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G--GGGCTTCSEESSSCC---
T ss_pred C--hhhhhccceeehhhhccc
Confidence 7 778899999999999886
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.2e-30 Score=245.65 Aligned_cols=230 Identities=18% Similarity=0.243 Sum_probs=166.7
Q ss_pred CCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCccc--CCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEE
Q 035831 140 TDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGS--FPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDAL 215 (443)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L 215 (443)
++|++|++++|+++.++. .|.++++|++|+|++|+++.. .+..+..+++|++|++++|.++ .++..+... +|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 355555555555555544 455555566666655555422 2344445555666666666555 344444333 56666
Q ss_pred EccCCcccccCC-ccc-cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc-cCccccCCCCCccEEEeeCCc
Q 035831 216 FLNNNRFSYSIP-EKL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG-CFPSEIGSLKNLRVFDVSSNL 292 (443)
Q Consensus 216 ~L~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~ 292 (443)
++++|++++..+ ..+ ...+|++|++++|.+.+..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666666553332 222 23567777777777777777788888999999999999886 578888899999999999999
Q ss_pred CCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCC-cCceeeCCCCCCCCCcc
Q 035831 293 FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSK-VNSAFDDASNCLAERPS 370 (443)
Q Consensus 293 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~L~l~~N~l~~~p~ 370 (443)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++ +|+.|++++|++++...
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9987788899999999999999999988777888999999999999999999888888874 89999999999987654
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.4e-29 Score=254.60 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=155.8
Q ss_pred CCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEc
Q 035831 140 TDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFL 217 (443)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L 217 (443)
.++++|+|++|+|+++.+ .|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..+... +|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 345555555555555444 45555555555555555554444455555555555555555552222223222 5555555
Q ss_pred cCCcccccCCccccC-CccceeeeccCC-CCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCc
Q 035831 218 NNNRFSYSIPEKLGR-STVSVVTFAHNN-FNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHG 295 (443)
Q Consensus 218 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 295 (443)
++|+++...+..+.. .+|++|++++|+ +....+..|.++++|++|++++|++++ ++ .+..+++|+.|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 555554333333322 556666666633 333333468888899999999999884 44 57888899999999999998
Q ss_pred CCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccc
Q 035831 296 NVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 296 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~ 371 (443)
..+..|.++++|+.|++++|++++..+..|.++++|+.|+|++|+|+++.+..+..+++|+.|++++|++.+-..-
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 8888899999999999999999988888899999999999999999988888888899999999999988765443
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=252.30 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=196.2
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc
Q 035831 119 AGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN 197 (443)
Q Consensus 119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 197 (443)
..++.++.+++ .+|..+. .+++.|+|++|++.++.+ .|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 35666666666 4555444 577788888888877776 7778888888888888887777777778888888888888
Q ss_pred cCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCC-CCccchhhhcCCcCceeeccCcccCccCc
Q 035831 198 NFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNF-NGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 198 ~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
++++..+..+... +|++|++++|.++...+..+.. .+|++|++++|+. ....+..|.++++|++|++++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 8773333344444 7888888888877555545543 6788888888544 4334457889999999999999998 455
Q ss_pred cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCc
Q 035831 275 SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKV 354 (443)
Q Consensus 275 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 354 (443)
.+..+++|++|+|++|++++..+..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|+++.+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4788999999999999999888999999999999999999999998999999999999999999999998888999999
Q ss_pred CceeeCCCCCCCCCcc
Q 035831 355 NSAFDDASNCLAERPS 370 (443)
Q Consensus 355 L~~L~l~~N~l~~~p~ 370 (443)
|+.|++++|++.+-..
T Consensus 281 L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEEECCSSCEECSST
T ss_pred CCEEEcCCCCccCCCC
Confidence 9999999999876444
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7e-30 Score=243.29 Aligned_cols=247 Identities=20% Similarity=0.246 Sum_probs=214.0
Q ss_pred CCcccceecCCCC----CCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccC--C-CccCCCCCCEEEc
Q 035831 98 VCSYNGVFCAPAL----DDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGII--P-DFSDWKLMFEFDV 170 (443)
Q Consensus 98 ~c~~~gv~c~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~~~l~~L~~L~L 170 (443)
.|.|.++.|.... ...-.+++++|+|++|+++...+..|.++++|++|++++|++.... + .+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3788888887532 1122368999999999999666666899999999999999998653 3 6778999999999
Q ss_pred cCCcCcccCCcccCCCCCCcEEecccccCCCCCC-CcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCC
Q 035831 171 SNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELP-CDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNG 247 (443)
Q Consensus 171 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 247 (443)
++|.++ .++..+..+++|++|++++|.+++..+ ..+... +|++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999998 567779999999999999999994443 344444 9999999999999888777754 889999999999987
Q ss_pred -ccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhc
Q 035831 248 -CIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQIC 326 (443)
Q Consensus 248 -~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~ 326 (443)
..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5788899999999999999999988889999999999999999999987777899999999999999999999999999
Q ss_pred CCC-CCCEEEecCCcCCCCC
Q 035831 327 KLP-SLSNFTFSYNYFQGLG 345 (443)
Q Consensus 327 ~l~-~L~~L~Ls~N~l~~~~ 345 (443)
.++ +|++|++++|.+++..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCTTCCEEECTTCCEECSG
T ss_pred hhhccCCEEEccCCCeeccc
Confidence 985 9999999999998753
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4.2e-30 Score=259.33 Aligned_cols=306 Identities=18% Similarity=0.246 Sum_probs=178.6
Q ss_pred HHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCC
Q 035831 31 AFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAP 108 (443)
Q Consensus 31 ~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~ 108 (443)
..+.+++.|++.++ ..+| .+..+..|++|++++|.+..... +..++ .+... ....|...++..
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~---------~L~~L--~l~~n~l~~~~~-- 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLT---------KLVDI--LMNNNQIADITP-- 107 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCT---------TCCEE--ECCSSCCCCCGG--
T ss_pred hHhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccc---------cCCEE--ECCCCccccChh--
Confidence 44566667777666 4555 36667777777777766432211 00000 00000 011122222211
Q ss_pred CCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC--------------------CccCCCCCCEE
Q 035831 109 ALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP--------------------DFSDWKLMFEF 168 (443)
Q Consensus 109 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------------------~~~~l~~L~~L 168 (443)
+.++++|++|++++|.+++.. . +.++++|++|++++|++.++.. .+.++++|++|
T Consensus 108 ---~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 108 ---LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182 (466)
T ss_dssp ---GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred ---hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEE
Confidence 345566667777777666432 2 6666666666666666554321 25566777888
Q ss_pred EccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCc
Q 035831 169 DVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGC 248 (443)
Q Consensus 169 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 248 (443)
++++|.+++. ..+..+++|++|++++|.+.+..+ .-...+|++|++++|.+++ ++......+|++|++++|.+.+.
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccc
Confidence 8888877643 346777778888888777774433 1122377777777777763 33333346677777777777654
Q ss_pred cchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCC
Q 035831 249 IPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKL 328 (443)
Q Consensus 249 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 328 (443)
.+ +..+++|++|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred hh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 43 66667777777777776643 22 6666667777777776664332 5566666666666666665543 5566
Q ss_pred CCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 329 PSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 329 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
++|++|++++|++++. ..+..+++|+.|++++|++++.++
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 6666666666666665 245566666666666666665543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.5e-29 Score=257.64 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=107.1
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
++|++|+|++|++++..+..|.++++|++|++++|++.++.+ .|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578899999999988888888999999999999999988887 8888999999999999998777777888899999999
Q ss_pred ccccCCC-CCCCcccCC-CCCEEEccCCcccccCC-cccc-CCccceeeeccCCCCCccchhhh
Q 035831 195 RYNNFEG-ELPCDLFDM-KLDALFLNNNRFSYSIP-EKLG-RSTVSVVTFAHNNFNGCIPRSIG 254 (443)
Q Consensus 195 ~~n~l~~-~~~~~~~~~-~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~L~~n~l~~~~~~~l~ 254 (443)
++|.+++ ..+..+... +|++|++++|.+.+.++ ..+. ..+|++|++++|++.+..+..++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 9998875 244555554 78888888887444444 3333 35677777777777665555443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.2e-29 Score=261.79 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=127.6
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccC-ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLS-GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 311 (443)
.+++.++++.|.+.+..+..+..++.|++|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 45788899999999888899999999999999999754 45778899999999999999999998999999999999999
Q ss_pred cccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCC-CcCceeeCCCCCCCCCccc
Q 035831 312 LSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGS-KVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 312 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~L~~L~l~~N~l~~~p~~ 371 (443)
|++|+|++..+..|..+++|++|++++|+|+++.+..+..+ ++|+.|++++|++.+-..-
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999999999887 6899999999999885543
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.7e-28 Score=245.02 Aligned_cols=303 Identities=15% Similarity=0.149 Sum_probs=209.6
Q ss_pred hHHHHHHHHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcccc
Q 035831 27 DAEAAFITRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWV-DNTDVCSYNG 103 (443)
Q Consensus 27 ~~~~~~~~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~~c~~~g 103 (443)
...++.+.+|+.|+++++ ..+| .|.++..|++|++++|++... +...+.... -....|...+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~--------------~~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL--------------DLSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE--------------ccccCCCCCEEECcCCCCce
Confidence 457889999999999999 6677 688999999999999885431 111111110 0112233333
Q ss_pred eecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCccc
Q 035831 104 VFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVV 183 (443)
Q Consensus 104 v~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 183 (443)
+ .+.++++|++|++++|.+++. + ++.+++|++|++++|+++++ .++.+++|++|++++|+..+.+ .+
T Consensus 100 ~------~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 100 L------DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp C------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CC
T ss_pred e------ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--cc
Confidence 2 245667788888888887753 3 77788888888888887775 3777778888888888554444 46
Q ss_pred CCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCcee
Q 035831 184 LSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEI 262 (443)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 262 (443)
..+++|++|++++|++++ ++ +... +|++|++++|++++. ......+|++|++++|++++ +| ++.+++|++|
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 777888888888888874 44 3333 788888888888754 22233678888888888876 44 7777888888
Q ss_pred eccCcccCccCccccCCCC-------CccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCch--------hhcC
Q 035831 263 ILSDNKLSGCFPSEIGSLK-------NLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSE--------QICK 327 (443)
Q Consensus 263 ~Ls~n~l~~~~p~~l~~l~-------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~--------~l~~ 327 (443)
++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.++. .+.+
T Consensus 239 ~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred EeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 8888888765433333332 34444555555444444 45678888888888876655443 2566
Q ss_pred CCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 328 LPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 328 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+++|++|++++|+++++ .+..++.|+.|++++|+|++++.
T Consensus 317 ~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCTT
T ss_pred cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCccc
Confidence 78899999999999996 27888999999999999988653
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=247.72 Aligned_cols=226 Identities=19% Similarity=0.209 Sum_probs=203.3
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
++++.|+|++|+|++..+..|.++++|++|+|++|++.++.+ .|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 578999999999999999999999999999999999999987 8999999999999999999877788999999999999
Q ss_pred ccccCCCCCCC-cccCC-CCCEEEccCCcccccCCc-cc-cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccC
Q 035831 195 RYNNFEGELPC-DLFDM-KLDALFLNNNRFSYSIPE-KL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLS 270 (443)
Q Consensus 195 ~~n~l~~~~~~-~~~~~-~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 270 (443)
++|.++ .++. .+... +|++|++++|...+.++. .+ +..+|++|++++|++.+. + .+..+++|++|+|++|+++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 999999 5554 45444 999999999554445544 34 347899999999999864 3 5888999999999999999
Q ss_pred ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 271 GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 271 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|++++|.+...
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 88899999999999999999999988899999999999999999999988888899999999999999998764
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.2e-28 Score=248.72 Aligned_cols=242 Identities=21% Similarity=0.321 Sum_probs=166.8
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCC-----------
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFP----------- 180 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------- 180 (443)
+.++++|++|++++|.+++..+ ++++++|++|++++|++.++.+ +.++++|++|++++|.+.+...
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence 4566778888888888875443 7888888888888888877654 7778888888888887764211
Q ss_pred --------cccCCCCCCcEEecccccCCCCCCCcccC-CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccch
Q 035831 181 --------RVVLSWPSLKFLDLRYNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPR 251 (443)
Q Consensus 181 --------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 251 (443)
..+.++++|++|++++|.++ .++. +.. .+|++|++++|.+.+..+ .....+|++|++++|++.+. .
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--G
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCC-CChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--h
Confidence 12445556666666666665 3322 222 366777777776664433 22335677777777777643 3
Q ss_pred hhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCC
Q 035831 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSL 331 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 331 (443)
.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 56677777777777777774433 6777788888888888774333 7777888888888888876543 6778888
Q ss_pred CEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCc
Q 035831 332 SNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERP 369 (443)
Q Consensus 332 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p 369 (443)
+.|++++|++++..+ +..+++|+.|++++|.+++++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence 888888888887765 667788888888888887764
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.4e-28 Score=231.98 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=157.1
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc
Q 035831 119 AGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN 197 (443)
Q Consensus 119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 197 (443)
++++.++++++ .+|..+ .++|++|++++|+++++.+ .|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666666 334332 3566677777777666665 5666667777777777666665666666667777777766
Q ss_pred c-CCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc
Q 035831 198 N-FEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 198 ~-l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
. ++...+..+... +|++|++++|.+++..+..+.. .+|++|++++|++.+..+..|+++++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 553334444443 6777777777766555555543 667777777777776666667788888888888888886555
Q ss_pred cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 275 SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 275 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 6678888888888888888877788888888888888888888877777788888888888888888764
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.5e-28 Score=226.19 Aligned_cols=249 Identities=18% Similarity=0.227 Sum_probs=199.4
Q ss_pred CcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCc-Cc
Q 035831 99 CSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNR-LV 176 (443)
Q Consensus 99 c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~-l~ 176 (443)
|++.+++..+.. ..+++++|++++|.+++..+..|.++++|++|++++|+++++.+ .|.++++|++|++++|. +.
T Consensus 18 c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 18 CPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 555555554432 24678999999999998887889999999999999999998877 89999999999999997 77
Q ss_pred ccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCcccc-CCccceeeeccCCCCCccchhhh
Q 035831 177 GSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLG-RSTVSVVTFAHNNFNGCIPRSIG 254 (443)
Q Consensus 177 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~ 254 (443)
...+..+..+++|++|++++|.+++..+..+... +|++|++++|++++..+..++ ..+|++|++++|++++..+..|.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 6668889999999999999999996666666654 899999999999866666564 47899999999999877777788
Q ss_pred cCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEE
Q 035831 255 NMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNF 334 (443)
Q Consensus 255 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 334 (443)
++++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+.. .-...++.+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~ 253 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF 253 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence 9999999999999999888889999999999999999999777777899999999999999987543211 011223444
Q ss_pred EecCCcCCCCCCCCCCC
Q 035831 335 TFSYNYFQGLGNECIPG 351 (443)
Q Consensus 335 ~Ls~N~l~~~~~~~~~~ 351 (443)
..+.+.+.+..|..+.+
T Consensus 254 ~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 254 RGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CSEECCCBEEESGGGTT
T ss_pred ccccCccccCCchHhCC
Confidence 56677777766665544
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=242.66 Aligned_cols=227 Identities=22% Similarity=0.221 Sum_probs=203.0
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+.++.|+|++|++++..+..|.++++|++|+|++|++.++.+ .|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 678999999999999888999999999999999999999987 8999999999999999999777778999999999999
Q ss_pred ccccCCCCCCCcccCC-CCCEEEccCCcccccCCc-ccc-CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 195 RYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPE-KLG-RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
++|.++...+..+... +|++|++++|+..+.++. .+. ..+|++|++++|+++. ++ .+..+++|++|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 9999994444455554 999999999654445544 443 4889999999999984 44 48899999999999999998
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+...
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 8899999999999999999999998899999999999999999999998888999999999999999998654
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=239.99 Aligned_cols=266 Identities=17% Similarity=0.187 Sum_probs=222.8
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEeccccc
Q 035831 120 GIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNN 198 (443)
Q Consensus 120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 198 (443)
..++++++++ .+|..+. ++|++|++++|+++++.+ .|.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4899999999 5676555 589999999999999988 89999999999999999998888899999999999999999
Q ss_pred CCCCCCCc-ccCC-CCCEEEccCCcccccCCc--ccc-CCccceeeeccCC-CCCccchhhhcCCcCceeeccCcccCcc
Q 035831 199 FEGELPCD-LFDM-KLDALFLNNNRFSYSIPE--KLG-RSTVSVVTFAHNN-FNGCIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 199 l~~~~~~~-~~~~-~L~~L~L~~n~l~~~~~~--~~~-~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
++ .++.. +... +|++|++++|++++ ++. .+. ..+|++|++++|+ +.+..+..|+++++|++|++++|++++.
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 99 56655 5554 99999999999984 444 443 4889999999994 6666678899999999999999999988
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhc---CCCCCCEEEecCCcCCCC----C
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQIC---KLPSLSNFTFSYNYFQGL----G 345 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~ 345 (443)
.+..+..+++|++|++++|++.......+..+++|++|++++|.+++..+..+. ....++.++++++.+++. +
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 899999999999999999999744444455689999999999999986654443 467889999999998773 3
Q ss_pred CCCCCCCCcCceeeCCCCCCCCCccccccccC----CCCccCCCCCCCC
Q 035831 346 NECIPGSKVNSAFDDASNCLAERPSQKWANTC----EPVVSNPVDCSRD 390 (443)
Q Consensus 346 ~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~----~~~~~np~~c~~~ 390 (443)
+..+..+++|+.|++++|.|+.+|...+.... ..+.+|++.|+|+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 55677889999999999999999986543222 2467999999985
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=223.89 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=136.4
Q ss_pred CCCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCc
Q 035831 96 TDVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNR 174 (443)
Q Consensus 96 ~~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~ 174 (443)
.+.|.|.|+.|... ..++.+++++++++ .+|..+. .+|++|++++|++.++.+ .|.++++|++|++++|+
T Consensus 2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSCN------NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEEE------TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEeC------CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 46899999998653 24568999999998 4665554 678999999999988887 78889999999999998
Q ss_pred CcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhh
Q 035831 175 LVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIG 254 (443)
Q Consensus 175 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 254 (443)
+++..+..|..+++|++|++++|.+++ ++. ..|.
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~---------------------------------------------~~~~ 106 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQA-LPI---------------------------------------------GVFD 106 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCC-CCT---------------------------------------------TTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCc-CCH---------------------------------------------hHcc
Confidence 886666667788888888888888772 222 1233
Q ss_pred cCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEE
Q 035831 255 NMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNF 334 (443)
Q Consensus 255 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 334 (443)
++++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 34444444444444444334444445555555555555543333344455555555555555554444445555555555
Q ss_pred EecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 335 TFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 335 ~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
++++|+++++.+..+..+++|+.|++++|++.+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 555555555544445555555555555555443
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.7e-30 Score=244.23 Aligned_cols=244 Identities=15% Similarity=0.114 Sum_probs=200.7
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCcc-CC-Ccc-------CCCCCCEEEccCCcCcccCCccc--
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGI-IP-DFS-------DWKLMFEFDVSNNRLVGSFPRVV-- 183 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~-~~~-------~l~~L~~L~Ls~n~l~~~~~~~l-- 183 (443)
.++|+.|++++|.+ .+|..+... |++|+|++|++... .+ .+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45678889999999 677766655 89999999999543 33 333 68999999999999998888876
Q ss_pred CCCCCCcEEecccccCCCCCCCcccC------CCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCc--cchhh-
Q 035831 184 LSWPSLKFLDLRYNNFEGELPCDLFD------MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGC--IPRSI- 253 (443)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~--~~~~l- 253 (443)
..+++|++|+|++|++++. |..+.. .+|++|++++|++++..+..++. .+|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999965 665543 58999999999999777677755 7899999999998765 33444
Q ss_pred -hcCCcCceeeccCcccCc--cCc-cccCCCCCccEEEeeCCcCCcCCc-hhccCCCCCceEEcccccCCccCchhhcCC
Q 035831 254 -GNMQNLNEIILSDNKLSG--CFP-SEIGSLKNLRVFDVSSNLFHGNVP-QSFSSLESIQTLILSHNQLTGFVSEQICKL 328 (443)
Q Consensus 254 -~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 328 (443)
+++++|++|++++|++++ .++ ..+..+++|++|++++|++++..+ ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 889999999999999983 122 344678999999999999997664 45677899999999999999 5566555
Q ss_pred CCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCC
Q 035831 329 PSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 329 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
++|++|++++|+|++. |. +..+++|+.|++++|+|++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999998 54 88999999999999998763
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=9.1e-28 Score=240.95 Aligned_cols=161 Identities=22% Similarity=0.322 Sum_probs=85.1
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
++|++|++++|.+++ +| +|+++++|++|++++|++++++..+ .+|++|++++|++++ +| .+.++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 355566666666554 44 3666666666666666665543222 356666666666654 33 45666666666666
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
+|.++ .+|... .+|++|++++|.++ .+|......+|++|++++|++.+ ++. .+.+|++|++++|++++ +|.
T Consensus 204 ~N~l~-~l~~~~--~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~ 274 (454)
T 1jl5_A 204 NNSLK-KLPDLP--LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE 274 (454)
T ss_dssp SSCCS-SCCCCC--TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCcCC-cCCCCc--CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCc
Confidence 66665 233322 25666666666665 44442233556666666666553 222 12455555555555553 332
Q ss_pred ccCCCCCccEEEeeCCcCCc
Q 035831 276 EIGSLKNLRVFDVSSNLFHG 295 (443)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~ 295 (443)
. .++|++|++++|++++
T Consensus 275 ~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 275 L---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp C---CTTCCEEECCSSCCSE
T ss_pred c---cCcCCEEECcCCccCc
Confidence 2 2455555555555553
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.3e-28 Score=232.98 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=170.2
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
.++.++++++.+.......+..+++|++|+|++|+++++.+ .|..+++|++|+|++|++++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777777765555556667778888888888777766 67777788888888887775443 7777788888888
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
+|.++ .++. ..+|++|++++|++++..+.. ..+|++|++++|++.+..+..++.+++|++|++++|.+++..+.
T Consensus 89 ~n~l~-~l~~---~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 89 NNYVQ-ELLV---GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSEEE-EEEE---CTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCccc-cccC---CCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 88776 3321 157788888888777544433 35678888888888776666777778888888888888766555
Q ss_pred cc-CCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCc
Q 035831 276 EI-GSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKV 354 (443)
Q Consensus 276 ~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 354 (443)
.+ ..+++|++|++++|++++. + ....+++|++|++++|+|++..+. +..+++|++|++++|+|+++ +..+..++.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCC
Confidence 55 3577888888888887744 3 233477788888888888765443 77778888888888888764 455777778
Q ss_pred CceeeCCCCCCC
Q 035831 355 NSAFDDASNCLA 366 (443)
Q Consensus 355 L~~L~l~~N~l~ 366 (443)
|+.|++++|.+.
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 888888888877
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=229.62 Aligned_cols=204 Identities=15% Similarity=0.237 Sum_probs=168.0
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCC---------
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLS--------- 185 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~--------- 185 (443)
+++|++|+|++|.++ .+|..++++++|++|+|++|++..++..+.++++|++|++++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 567899999999999 8888999999999999999999966558999999999999999888888877654
Q ss_pred CCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeec
Q 035831 186 WPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIIL 264 (443)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 264 (443)
+++|++|++++|.++ .+|..+... +|++|++++|.++ .++..++.+++|++|++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~------------------------~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS------------------------ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC------------------------CCCGGGGGCTTCCEEEC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC------------------------cCchhhccCCCCCEEEC
Confidence 778888888888877 666555443 5555555555544 34556788888899999
Q ss_pred cCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 265 SDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 265 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
++|.+.+.+|..++.+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|+.+++..|.+...
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 98888888888888889999999999888888888888889999999999988888888899999999998888877654
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.5e-26 Score=230.49 Aligned_cols=223 Identities=22% Similarity=0.226 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
.+|++|++++|.+++ +| .++++++|++|++++|++++++... .+|++|++++|+++ .+| .+..+++|++|+++
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 478888888888886 45 5888888888888888888754422 47888888888888 566 48888888888888
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
+|+++ .+|... .+|++|++++|++++ ++... .+|++|++++|++.+. +. -.++|++|++++|++++ ++
T Consensus 246 ~N~l~-~l~~~~--~~L~~L~l~~N~l~~-l~~~~--~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~- 313 (454)
T 1jl5_A 246 NNLLK-TLPDLP--PSLEALNVRDNYLTD-LPELP--QSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC- 313 (454)
T ss_dssp SSCCS-SCCSCC--TTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC-
T ss_pred CCcCC-cccccc--cccCEEECCCCcccc-cCccc--CcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc-
Confidence 88888 455432 588888888888874 45432 6788889988888762 11 12578889999998874 22
Q ss_pred ccCCC-CCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCC--CCCCCCCCC
Q 035831 276 EIGSL-KNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQG--LGNECIPGS 352 (443)
Q Consensus 276 ~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~~ 352 (443)
.+ ++|++|++++|++++ +|.. +++|++|++++|+++++ |. .+++|++|++++|++++ .+|..+..+
T Consensus 314 ---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 314 ---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 33 589999999999985 5544 47899999999999854 44 47889999999999998 566777666
Q ss_pred -------------CcCceeeCCCCCCCCC
Q 035831 353 -------------KVNSAFDDASNCLAER 368 (443)
Q Consensus 353 -------------~~L~~L~l~~N~l~~~ 368 (443)
++|+.|++++|.++++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp ECCC-------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCcc
Confidence 7899999999999864
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-28 Score=243.19 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=138.2
Q ss_pred CCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccC
Q 035831 141 DLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNN 219 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~ 219 (443)
+|++|+|++|.+.++.+ .|..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++ ++. ..+|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC---CCCcCEEECcC
Confidence 56666666666666555 56666666666666666654433 5566666666666666552 221 14566666666
Q ss_pred CcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccC-CCCCccEEEeeCCcCCcCCc
Q 035831 220 NRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIG-SLKNLRVFDVSSNLFHGNVP 298 (443)
Q Consensus 220 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p 298 (443)
|.+++..+.. ..+|+.|++++|.+.+..+..++.+++|++|+|++|.+++..+..+. .+++|+.|+|++|.|++. +
T Consensus 109 N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 109 NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 6665443332 24577777777777766666777777777777777777766666665 567777777777777744 2
Q ss_pred hhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCC
Q 035831 299 QSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLA 366 (443)
Q Consensus 299 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~ 366 (443)
.+..+++|+.|+|++|.|++..+. +..+++|+.|++++|.|+++ |..+..++.|+.|++++|.+.
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 -GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred -ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence 233467777777777777765443 66777777777777777764 445666777777777777776
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-28 Score=233.92 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=202.8
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
++|++|+|++|.+++..+..|.++++|++|+|++|++++..+ +..+++|++|++++|++++.. ..++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 579999999999998888999999999999999999998775 899999999999999998432 34899999999
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhh-hcCCcCceeeccCcccCccC
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSI-GNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 273 (443)
+|.+++..+.. ..+|++|++++|++++..+..++. .+|++|++++|.+.+..+..+ ..+++|++|++++|.+++.
T Consensus 108 ~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp SSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 99999544333 247999999999999776666654 789999999999998877776 4789999999999999854
Q ss_pred ccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCC-CCCCCCCCCC
Q 035831 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQ-GLGNECIPGS 352 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~~ 352 (443)
+ ....+++|++|+|++|++++ ++..+..+++|++|++++|+|++ +|..+..+++|+.|++++|.+. +..+..+..+
T Consensus 185 ~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 185 K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 3 34458999999999999995 45558899999999999999995 5677899999999999999998 6667777888
Q ss_pred CcCceeeCCCC
Q 035831 353 KVNSAFDDASN 363 (443)
Q Consensus 353 ~~L~~L~l~~N 363 (443)
+.|+.+++.++
T Consensus 262 ~~L~~l~l~~~ 272 (317)
T 3o53_A 262 QRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred ccceEEECCCc
Confidence 88998888743
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=3.4e-26 Score=214.49 Aligned_cols=204 Identities=16% Similarity=0.126 Sum_probs=111.4
Q ss_pred CCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEcc
Q 035831 141 DLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLN 218 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~ 218 (443)
+|++|++++|+++++.+ .|.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..+... +|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555544 45555555555555555554444455555555555555555553322333222 34444444
Q ss_pred CCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc-CccccCCCCCccEEEeeCCcCCcCC
Q 035831 219 NNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC-FPSEIGSLKNLRVFDVSSNLFHGNV 297 (443)
Q Consensus 219 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 297 (443)
+|.+.+ ..+..++++++|++|++++|.+++. +|..+..+++|++|++++|++++..
T Consensus 109 ~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 109 ETNLAS-----------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TSCCCC-----------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCccc-----------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 443332 2222344555666666666666532 3556666666666666666666555
Q ss_pred chhccCCCCCc----eEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCC
Q 035831 298 PQSFSSLESIQ----TLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 298 p~~l~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
+..+..+.+|+ .|++++|.+++..+..+.. .+|++|++++|+++++++..+..+++|+.|++++|++.+-
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 55555554444 6666666666554444433 3567777777777666666666666777777777766653
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=241.67 Aligned_cols=235 Identities=19% Similarity=0.210 Sum_probs=202.6
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+ |..+++|++|+|++|.+++.. ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 3589999999999999888999999999999999999998776 999999999999999998533 2389999999
Q ss_pred ccccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhh-cCCcCceeeccCcccCcc
Q 035831 195 RYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIG-NMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~ 272 (443)
++|.+++..+..+ .+|++|++++|.+++..+..++. .+|++|++++|.+.+..+..+. .+++|++|+|++|.+++.
T Consensus 107 ~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9999995544322 58999999999999887877754 7899999999999998888876 799999999999999955
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCC-CCCCCCCCC
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQ-GLGNECIPG 351 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~ 351 (443)
+ .+..+++|+.|+|++|.+++.. ..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +..+..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -c-ccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 3 3446999999999999999654 458899999999999999996 5667899999999999999998 555666777
Q ss_pred CCcCceeeCC
Q 035831 352 SKVNSAFDDA 361 (443)
Q Consensus 352 ~~~L~~L~l~ 361 (443)
++.++.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 7777777664
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.6e-25 Score=224.85 Aligned_cols=209 Identities=18% Similarity=0.173 Sum_probs=124.0
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+++|++|++++|.+++. | .++.+++|++|++++|+++++. ++.+++|++|++++|++++. + +..+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 45566666666666643 3 4666666666666666666652 66666666666666666643 2 666666666666
Q ss_pred ccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 195 RYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
++|++++ ++ +... +|++|++++|++++. + .....+|++|++++|+..+.+ .++.+++|++|++++|++++ +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 6666663 33 3332 666666666666642 1 222355666666666444333 35556666666666666663 3
Q ss_pred ccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCC
Q 035831 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN 346 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 346 (443)
+ +..+++|+.|++++|++++. .+..+++|++|++++|+++++ | +..+++|+.|++++|++++..+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH
Confidence 3 55566666666666666643 255566666666666666653 2 5556666666666666666543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.9e-27 Score=227.17 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=182.9
Q ss_pred EEEEEcCCCCCc-ccCchhhc-------CCCCCCEEEccCCcCCccCC-Cc--cCCCCCCEEEccCCcCcccCCcccCCC
Q 035831 118 VAGIDLNGNDIA-GSFPAELG-------LLTDLALFHVNSNRFCGIIP-DF--SDWKLMFEFDVSNNRLVGSFPRVVLSW 186 (443)
Q Consensus 118 L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~-~~--~~l~~L~~L~Ls~n~l~~~~~~~l~~l 186 (443)
+++|+|++|.++ ..++..+. ++++|++|++++|++++..+ .+ ..+++|++|+|++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 567788888884 45666665 79999999999999997766 54 8899999999999999976 7777766
Q ss_pred -----CCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccC--Cccc---cCCccceeeeccCCCCCc---cchh
Q 035831 187 -----PSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSI--PEKL---GRSTVSVVTFAHNNFNGC---IPRS 252 (443)
Q Consensus 187 -----~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~--~~~~---~~~~L~~L~L~~n~l~~~---~~~~ 252 (443)
++|++|++++|++++..+..+... +|++|++++|++.+.+ +..+ ...+|++|++++|++.+. ....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 899999999999996666777765 8999999999987542 2222 347899999999999842 2244
Q ss_pred hhcCCcCceeeccCcccCccCc-cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCC
Q 035831 253 IGNMQNLNEIILSDNKLSGCFP-SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSL 331 (443)
Q Consensus 253 l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 331 (443)
+.++++|++|++++|++++..+ ..+..+++|++|+|++|+|+ .+|..+. ++|++|++++|+|++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 5688999999999999997664 45677899999999999999 7787776 8999999999999987 55 8999999
Q ss_pred CEEEecCCcCCCC
Q 035831 332 SNFTFSYNYFQGL 344 (443)
Q Consensus 332 ~~L~Ls~N~l~~~ 344 (443)
++|++++|+|++.
T Consensus 299 ~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 299 GNLSLKGNPFLDS 311 (312)
T ss_dssp EEEECTTCTTTCC
T ss_pred CEEeccCCCCCCC
Confidence 9999999999874
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=9.3e-26 Score=211.53 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=170.4
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+++++|++++|++++..+..|.++++|++|++++|++.++.+ .|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 469999999999998888899999999999999999999988 8999999999999999999888889999999999999
Q ss_pred ccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 195 RYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
++|.+.+..+..+... +|++|++++|.+++. .++..++++++|++|++++|++++..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcCC
Confidence 9999995544445443 677777777666521 24667778888888888888888666
Q ss_pred ccccCCCCCcc----EEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 274 PSEIGSLKNLR----VFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 274 p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+..+..+.+|+ .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 66666666665 889999998865555444 44799999999999988777788899999999999998865
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.2e-25 Score=206.97 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=114.0
Q ss_pred hcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEE
Q 035831 136 LGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDAL 215 (443)
Q Consensus 136 ~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 215 (443)
++++++++++++++|+++.++..+. +++++|+|++|++++..+..|..+++|++|+|++|.++ .++......+|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCEE
Confidence 4445555555555555555544332 45566666666665555555666666666666666655 22222111244444
Q ss_pred EccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCc
Q 035831 216 FLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHG 295 (443)
Q Consensus 216 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 295 (443)
++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++
T Consensus 83 ~Ls~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 83 DLSHNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECCSSCCS------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ECCCCcCC------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 44444443 233344555566666666666664444556666666666666666665
Q ss_pred CCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 296 NVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 296 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+|+.+ |..+.....|+.+++++|++.+
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 5555556666666666666666655555556666666666666666644 3334444566666666666654
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1e-24 Score=205.84 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=156.7
Q ss_pred ccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCcccee
Q 035831 159 FSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVV 238 (443)
Q Consensus 159 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 238 (443)
+.++++++++++++|.++ .+|..+. +++++|+|++|.+++..+..+... .+|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l----------------------~~L~~L 60 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPY----------------------TRLTQL 60 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTC----------------------TTCCEE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcC----------------------CCCCEE
Confidence 445555666666666655 3333332 455555555555553333333332 445555
Q ss_pred eeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCC
Q 035831 239 TFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLT 318 (443)
Q Consensus 239 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 318 (443)
++++|.+++..+ .+.+++|++|++++|+++ .+|..+..+++|++|++++|+|++..+..|.++++|++|+|++|+|+
T Consensus 61 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 61 NLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 555555553322 267899999999999999 78888999999999999999999877788999999999999999999
Q ss_pred ccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccccC---CCCccCCCCCCCCC
Q 035831 319 GFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWANTC---EPVVSNPVDCSRDM 391 (443)
Q Consensus 319 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~---~~~~~np~~c~~~~ 391 (443)
+..+..|..+++|+.|++++|+|+++.+..+..+++|+.|++++|+|+.+|...+.... ..+.+|||.|+|..
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 98888899999999999999999999888899999999999999999999987665322 23579999999853
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=6.3e-28 Score=242.83 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=222.2
Q ss_pred HHHHHHhhhcCCCCCC-------CCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCccc
Q 035831 30 AAFITRRQLLTLPKDG-------KLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYN 102 (443)
Q Consensus 30 ~~~~~~l~~l~l~~~~-------~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~ 102 (443)
+..+.+|+.|+++++. .++..+..+.+|++|++++|++.... ...+...+.... ..+.... ...|...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~-~~L~~L~--L~~n~i~ 98 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG--VHCVLQGLQTPS-CKIQKLS--LQNCCLT 98 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH--HHHHHHTTCSTT-CCCCEEE--CTTSCCB
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH--HHHHHHHHhhCC-CceeEEE--ccCCCCC
Confidence 6788899999999983 33556677789999999999876532 223333221100 0111111 1122222
Q ss_pred ceecCC-CCCCCCCCcEEEEEcCCCCCcccCchhhc-----CCCCCCEEEccCCcCCccC----C-CccCCCCCCEEEcc
Q 035831 103 GVFCAP-ALDDPNITVVAGIDLNGNDIAGSFPAELG-----LLTDLALFHVNSNRFCGII----P-DFSDWKLMFEFDVS 171 (443)
Q Consensus 103 gv~c~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~-~~~~l~~L~~L~Ls 171 (443)
...+.. ...+..+++|++|+|++|.+++..+..+. ...+|++|++++|++++.. + .+..+++|++|+++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 110000 01234556788888888887654443332 2557888888888877643 2 45667888888888
Q ss_pred CCcCcccCCcccC-----CCCCCcEEecccccCCCC----CCCcccC-CCCCEEEccCCcccccCCcc----c--cCCcc
Q 035831 172 NNRLVGSFPRVVL-----SWPSLKFLDLRYNNFEGE----LPCDLFD-MKLDALFLNNNRFSYSIPEK----L--GRSTV 235 (443)
Q Consensus 172 ~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~-~~L~~L~L~~n~l~~~~~~~----~--~~~~L 235 (443)
+|.+.+.....+. ..++|++|++++|.+++. ++..+.. .+|++|++++|.+++..... + ...+|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 8887654443333 356888888888888743 3433333 38888888888876532211 1 24678
Q ss_pred ceeeeccCCCCCc----cchhhhcCCcCceeeccCcccCccCccccC-----CCCCccEEEeeCCcCCcC----Cchhcc
Q 035831 236 SVVTFAHNNFNGC----IPRSIGNMQNLNEIILSDNKLSGCFPSEIG-----SLKNLRVFDVSSNLFHGN----VPQSFS 302 (443)
Q Consensus 236 ~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~l~ 302 (443)
++|++++|.+++. ++..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 8999999988764 566777788999999999988754333332 236899999999988864 456677
Q ss_pred CCCCCceEEcccccCCccCchhhcC-----CCCCCEEEecCCcCCC----CCCCCCCCCCcCceeeCCCCCCCCC
Q 035831 303 SLESIQTLILSHNQLTGFVSEQICK-----LPSLSNFTFSYNYFQG----LGNECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 303 ~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
.+++|++|++++|.+++..+..+.. .++|++|++++|++++ ..+..+..+++|+.|++++|.|++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 7789999999999988765544432 6789999999999986 4566667788899999999988764
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=8.8e-24 Score=218.79 Aligned_cols=263 Identities=20% Similarity=0.278 Sum_probs=213.2
Q ss_pred HHhhhcCCCCC--CCCCCCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceecCCCCC
Q 035831 34 TRRQLLTLPKD--GKLPDNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSYNGVFCAPALD 111 (443)
Q Consensus 34 ~~l~~l~l~~~--~~~P~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~ 111 (443)
.+++.|+++++ ..+|..+. ..|+.|++++|.+.. ..
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~----------------------lp------------------ 77 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS----------------------LP------------------ 77 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC----------------------CC------------------
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC----------------------CC------------------
Confidence 45789999999 78887775 789999998777421 00
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcE
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKF 191 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 191 (443)
..+++|++|+|++|.|++ +|. .+++|++|++++|++++++. .+.+|++|++++|++++ +|.. +++|++
T Consensus 78 -~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~ 145 (622)
T 3g06_A 78 -ALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQE 145 (622)
T ss_dssp -CCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -CcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCE
Confidence 023679999999999984 554 78999999999999998765 67899999999999985 5543 489999
Q ss_pred EecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 192 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
|++++|.++ .+|.. ..+|+.|++++|.+++ ++ ....+|+.|++++|.+.+ ++. .+.+|+.|++++|.++
T Consensus 146 L~Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 146 LSVSDNQLA-SLPAL--PSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp EECCSSCCS-CCCCC--CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-
T ss_pred EECcCCcCC-CcCCc--cCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-
Confidence 999999998 55542 2489999999999984 55 234789999999999985 443 3478999999999999
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPG 351 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 351 (443)
.++.. +++|+.|++++|+|++ +| ..+++|+.|++++|.|+++ |. .+++|+.|++++|+|+.+ |..+..
T Consensus 215 ~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~~l-p~~l~~ 282 (622)
T 3g06_A 215 SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLTRL-PESLIH 282 (622)
T ss_dssp SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCCSC-CGGGGG
T ss_pred ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCCcC-CHHHhh
Confidence 55543 5889999999999995 55 4568999999999999964 33 678999999999999955 667899
Q ss_pred CCcCceeeCCCCCCCCCccccc
Q 035831 352 SKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 352 ~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
+++|+.|++++|++++.....+
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHH
Confidence 9999999999999987655443
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.7e-25 Score=208.01 Aligned_cols=220 Identities=16% Similarity=0.183 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc
Q 035831 118 VAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN 197 (443)
Q Consensus 118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 197 (443)
+..+++.++.+.+. ..+..+++|+.|++++|.+..+. .+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 34455555555533 23455667777777777766543 466677777777777777642 35667777777777777
Q ss_pred cCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 198 NFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 198 ~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
.+++..+..+... +|++|++++|++++..+..++. .+|++|++++|++.+..+..++.+++|++|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 7764333333333 5666666666555333322221 3344444444444433334444455555555555555544344
Q ss_pred ccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCC
Q 035831 276 EIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECI 349 (443)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 349 (443)
.++.+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++|.+|..+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 444455555555555555544444444555555555555544422 2344445555555555444443
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2.4e-24 Score=199.05 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=133.5
Q ss_pred CCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcC
Q 035831 97 DVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRL 175 (443)
Q Consensus 97 ~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l 175 (443)
++|.|.|..|.. ..++++++++.++ .+|..+. .++++|+|++|++.++.+ .|.++++|++|+|++|++
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 356788999953 3568999999998 5666554 588999999999988887 788888999999999988
Q ss_pred cccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhc
Q 035831 176 VGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGN 255 (443)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 255 (443)
++..+..|..+++|++|+|++|.+++ ++ +..|..
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~---------------------------------------------~~~~~~ 105 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLAS-LP---------------------------------------------LGVFDH 105 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCC-CC---------------------------------------------TTTTTT
T ss_pred CccCHhHhccCCcCCEEECCCCcccc-cC---------------------------------------------hhHhcc
Confidence 87777778888888888888888772 22 123445
Q ss_pred CCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEE
Q 035831 256 MQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFT 335 (443)
Q Consensus 256 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 335 (443)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 55666666666666644444455666666666666666654444566666666666666666665555666666666666
Q ss_pred ecCCcCCCC
Q 035831 336 FSYNYFQGL 344 (443)
Q Consensus 336 Ls~N~l~~~ 344 (443)
+++|.+.+.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 666666554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=196.86 Aligned_cols=180 Identities=19% Similarity=0.246 Sum_probs=145.8
Q ss_pred CCCEEEccCCcccccCCcccc-CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEee
Q 035831 211 KLDALFLNNNRFSYSIPEKLG-RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVS 289 (443)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 289 (443)
++++|++++|++++..+..+. ..+|++|++++|++.+..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 344444444444433333332 2556666666666665555667889999999999999997777788999999999999
Q ss_pred CCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCc
Q 035831 290 SNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERP 369 (443)
Q Consensus 290 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p 369 (443)
+|++++..+..|..+++|++|++++|.|++..+..|..+++|++|++++|+++++.+..+..+++|+.|++++|.|++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 99999888888999999999999999999888888999999999999999999998888999999999999999999998
Q ss_pred cccccccC----CCCccCCCCCCCC
Q 035831 370 SQKWANTC----EPVVSNPVDCSRD 390 (443)
Q Consensus 370 ~~~~~~~~----~~~~~np~~c~~~ 390 (443)
...+.... ..+.+|||.|+|.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCc
Confidence 86554322 2467999999986
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=9.7e-26 Score=219.89 Aligned_cols=248 Identities=17% Similarity=0.181 Sum_probs=181.9
Q ss_pred EEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-----CccCCC-CCCEEEccCCcCcccCCcccCCC-----CCC
Q 035831 121 IDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-----DFSDWK-LMFEFDVSNNRLVGSFPRVVLSW-----PSL 189 (443)
Q Consensus 121 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L 189 (443)
++++.|++++.++..+...++|++|+|++|++++... .|..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5778888888777777777778888888888887653 466777 78888888888887666666554 788
Q ss_pred cEEecccccCCCCCCCcccC------CCCCEEEccCCcccccCCcccc------CCccceeeeccCCCCCcc----chhh
Q 035831 190 KFLDLRYNNFEGELPCDLFD------MKLDALFLNNNRFSYSIPEKLG------RSTVSVVTFAHNNFNGCI----PRSI 253 (443)
Q Consensus 190 ~~L~L~~n~l~~~~~~~~~~------~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~L~~n~l~~~~----~~~l 253 (443)
++|+|++|.+++..+..+.. .+|++|++++|.+++..+..+. ..+|++|++++|.+.+.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888887555543322 4788888888888765554432 247888888888887543 3344
Q ss_pred hcCC-cCceeeccCcccCccCcccc----CCC-CCccEEEeeCCcCCcC----CchhccC-CCCCceEEcccccCCccCc
Q 035831 254 GNMQ-NLNEIILSDNKLSGCFPSEI----GSL-KNLRVFDVSSNLFHGN----VPQSFSS-LESIQTLILSHNQLTGFVS 322 (443)
Q Consensus 254 ~~l~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~~ 322 (443)
..+. +|++|+|++|++++..+..+ ..+ ++|++|+|++|.|++. ++..+.. .++|++|+|++|.|++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 5554 89999999999886665443 344 5899999999998853 3445554 3589999999999887654
Q ss_pred ----hhhcCCCCCCEEEecCCcCCCCCC-------CCCCCCCcCceeeCCCCCCCCC
Q 035831 323 ----EQICKLPSLSNFTFSYNYFQGLGN-------ECIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 323 ----~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~~~L~~L~l~~N~l~~~ 368 (443)
..+..+++|++|++++|.+.++.. ..+..++.|+.||+++|.+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 344667889999999998655443 3567788899999999988764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=195.27 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCCEEEccCCcCCccCC-CccCCCCCCEEEccCCc-CcccCCcccCCCCCCcEEeccc-ccCCCCCCCcccCC-CCCEEE
Q 035831 141 DLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNR-LVGSFPRVVLSWPSLKFLDLRY-NNFEGELPCDLFDM-KLDALF 216 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~-~L~~L~ 216 (443)
+|++|++++|+++++.+ .|.++++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+... +|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555544 45555555555555554 4444444455555555555554 55542222222222 344444
Q ss_pred ccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCc---eeeccCc-ccCccCccccCCCCCcc-EEEeeCC
Q 035831 217 LNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLN---EIILSDN-KLSGCFPSEIGSLKNLR-VFDVSSN 291 (443)
Q Consensus 217 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~N 291 (443)
+++|.+++ +|. +..+.+|+ +|++++| ++++..+..|..+++|+ .|++++|
T Consensus 112 l~~n~l~~-lp~------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKM-FPD------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCS-CCC------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCCcc-ccc------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 44443331 221 22333333 5555555 55433334455555555 5555555
Q ss_pred cCCcCCchhccCCCCCceEEccccc-CCccCchhhcCC-CCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCC
Q 035831 292 LFHGNVPQSFSSLESIQTLILSHNQ-LTGFVSEQICKL-PSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASN 363 (443)
Q Consensus 292 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N 363 (443)
+++...+..+.. .+|++|++++|+ ++++.+..|..+ ++|++|++++|+++++++. .++.|+.|++.++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 555222222332 455555555553 555545555555 5566666666655554333 2344555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.7e-24 Score=198.95 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=180.7
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
.+++|+.|++++|.++.. ..+..+++|++|++++|++.++ +.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 357799999999999843 3589999999999999999885 3788999999999999999988888899999999999
Q ss_pred cccccCCCCCCCcccCC-CCCEEEccCCcccccCCcccc-CCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCc
Q 035831 194 LRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLG-RSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSG 271 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (443)
+++|++++..+..+... +|++|++++|.+++..+..++ ..+|++|++++|++++..+..++.+++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999995555555554 999999999999976666654 4889999999999998888888999999999999999998
Q ss_pred cCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 330 (443)
..+..+..+++|++|++++|.+.+. ++.|+.|++..|.++|.+|.+++.+..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8787889999999999999998754 457899999999999999988876654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=6.1e-26 Score=218.77 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=210.9
Q ss_pred CcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCC--CCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCc
Q 035831 99 CSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLL--TDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLV 176 (443)
Q Consensus 99 c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~ 176 (443)
..|.++.+.+ ..++.++++++.+. +..+..+ .+++.|++++|.+.+..+.+..+++|++|++++|.++
T Consensus 37 ~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 37 KRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp HHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC
T ss_pred HHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC
Confidence 3688887754 24678999999887 4567777 8999999999999998887778999999999999998
Q ss_pred cc-CCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCC-ccccc-CCccc-cCCccceeeeccC-CCCCc-c
Q 035831 177 GS-FPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNN-RFSYS-IPEKL-GRSTVSVVTFAHN-NFNGC-I 249 (443)
Q Consensus 177 ~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n-~l~~~-~~~~~-~~~~L~~L~L~~n-~l~~~-~ 249 (443)
+. ++..+..+++|++|++++|.+++..+..+... +|++|++++| .+++. ++..+ ...+|++|++++| .+++. +
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 65 78889999999999999999987777766665 9999999999 67643 44433 3478999999999 88865 5
Q ss_pred chhhhcCC-cCceeeccCc--ccC-ccCccccCCCCCccEEEeeCCc-CCcCCchhccCCCCCceEEccccc-CCccCch
Q 035831 250 PRSIGNMQ-NLNEIILSDN--KLS-GCFPSEIGSLKNLRVFDVSSNL-FHGNVPQSFSSLESIQTLILSHNQ-LTGFVSE 323 (443)
Q Consensus 250 ~~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~ 323 (443)
+..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +......
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 77788999 9999999999 454 3566777889999999999999 777778889999999999999995 4433334
Q ss_pred hhcCCCCCCEEEecCCcCCCCCCCCCCCC-CcCceeeCCCCCCCCCccccc
Q 035831 324 QICKLPSLSNFTFSYNYFQGLGNECIPGS-KVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 324 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~L~~L~l~~N~l~~~p~~~~ 373 (443)
.+.++++|++|++++| ++. ..+..+ ..+..|++++|.+++......
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 6888999999999999 433 334443 347788899999998665443
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.5e-23 Score=217.14 Aligned_cols=219 Identities=21% Similarity=0.245 Sum_probs=138.6
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
++|+.|+|++|.|+ .+|. .+++|++|+|++|++++++. .+++|++|+|++|++++ ++. .+++|++|+++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 34555555555555 2332 34555555555555554433 44555555555555553 222 34555666666
Q ss_pred cccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc
Q 035831 196 YNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS 275 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 275 (443)
+|+++ .+|..+ .+|++|++++|.+++ ++.. ..+|+.|++++|.+++ ++ ..+++|+.|++++|.+++ ++.
T Consensus 130 ~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~ 198 (622)
T 3g06_A 130 GNQLT-SLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT 198 (622)
T ss_dssp SSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC
T ss_pred CCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCc--cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC
Confidence 66555 344322 456666666666652 3321 2456666666666654 33 345778888888888773 443
Q ss_pred ccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcC
Q 035831 276 EIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVN 355 (443)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L 355 (443)
. +++|+.|++++|.++ .++.. +++|+.|++++|+|+++ | ..+++|+.|++++|+|+++.. .+++|
T Consensus 199 ~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~lp~----~~~~L 263 (622)
T 3g06_A 199 L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSLPM----LPSGL 263 (622)
T ss_dssp C---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred c---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcCCc----ccccC
Confidence 2 467888888888887 44432 47899999999999864 3 456889999999999987644 56789
Q ss_pred ceeeCCCCCCCCCccc
Q 035831 356 SAFDDASNCLAERPSQ 371 (443)
Q Consensus 356 ~~L~l~~N~l~~~p~~ 371 (443)
+.|++++|.|+.+|..
T Consensus 264 ~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 264 LSLSVYRNQLTRLPES 279 (622)
T ss_dssp CEEECCSSCCCSCCGG
T ss_pred cEEeCCCCCCCcCCHH
Confidence 9999999999988764
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=204.35 Aligned_cols=199 Identities=14% Similarity=0.114 Sum_probs=110.3
Q ss_pred CCCCEEEccCCcCcccCCccc--CCCCCCcEEecccccCCCCCCC----cccC-CCCCEEEccCCcccccCCccccC-Cc
Q 035831 163 KLMFEFDVSNNRLVGSFPRVV--LSWPSLKFLDLRYNNFEGELPC----DLFD-MKLDALFLNNNRFSYSIPEKLGR-ST 234 (443)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~----~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~ 234 (443)
++|++|++++|.+.+..+..+ ..+++|++|+|++|.+++..+. .+.. .+|++|++++|.+.+..+..++. .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555444 4555555555555555533221 1111 25555555555555444444432 45
Q ss_pred cceeeeccCCCCCc--c--chhhhcCCcCceeeccCcccCccCcc----ccCCCCCccEEEeeCCcCCcCCchhccCC--
Q 035831 235 VSVVTFAHNNFNGC--I--PRSIGNMQNLNEIILSDNKLSGCFPS----EIGSLKNLRVFDVSSNLFHGNVPQSFSSL-- 304 (443)
Q Consensus 235 L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-- 304 (443)
|++|++++|++.+. + ...++.+++|++|++++|+++ .++. .++.+++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55556665555432 1 112345666777777777665 2222 23556677777777777766556555554
Q ss_pred -CCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 305 -ESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 305 -~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
++|++|+|++|+|+. +|..+. ++|++|++++|+|+++. . +..++.|+.|++++|+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~~-~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRAP-Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSCC-C-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCCc-h-hhhCCCccEEECcCCCCCC
Confidence 467777777777773 344442 56777777777777652 2 4556677777777777654
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3.9e-26 Score=229.72 Aligned_cols=252 Identities=13% Similarity=0.111 Sum_probs=196.0
Q ss_pred CcEEEEEcCCCCCcccC----chhhcCCCCCCEEEccCCcCCccCC-Ccc-----CCCCCCEEEccCCcCccc----CCc
Q 035831 116 TVVAGIDLNGNDIAGSF----PAELGLLTDLALFHVNSNRFCGIIP-DFS-----DWKLMFEFDVSNNRLVGS----FPR 181 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~-~~~-----~l~~L~~L~Ls~n~l~~~----~~~ 181 (443)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+... .+. ..++|++|++++|.+++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 56999999999998743 5667788999999999999876543 332 367999999999999864 567
Q ss_pred ccCCCCCCcEEecccccCCCCCC----Cccc--CCCCCEEEccCCccccc----CCcccc-CCccceeeeccCCCCCccc
Q 035831 182 VVLSWPSLKFLDLRYNNFEGELP----CDLF--DMKLDALFLNNNRFSYS----IPEKLG-RSTVSVVTFAHNNFNGCIP 250 (443)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~----~~~~--~~~L~~L~L~~n~l~~~----~~~~~~-~~~L~~L~L~~n~l~~~~~ 250 (443)
.+..+++|++|++++|.+++... ..+. ..+|++|++++|.++.. ++..+. ..+|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 78889999999999999874321 2222 24999999999999854 344443 4789999999999976655
Q ss_pred hhhhcC-----CcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcCCchhccC-----CCCCceEEccccc
Q 035831 251 RSIGNM-----QNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSS-----LESIQTLILSHNQ 316 (443)
Q Consensus 251 ~~l~~l-----~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~ 316 (443)
..+... ++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 555433 6999999999999865 4666778899999999999998655544432 6799999999999
Q ss_pred CCc----cCchhhcCCCCCCEEEecCCcCCCCCCCCC----C-CCCcCceeeCCCCCCCC
Q 035831 317 LTG----FVSEQICKLPSLSNFTFSYNYFQGLGNECI----P-GSKVNSAFDDASNCLAE 367 (443)
Q Consensus 317 l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~----~-~~~~L~~L~l~~N~l~~ 367 (443)
+++ .++..+..+++|++|++++|++++.....+ . ....|+.|++.++.+..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 996 677888899999999999999987533222 1 23467778777776553
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=9.4e-26 Score=221.89 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=138.8
Q ss_pred CchhhcCCCCCCEEEccCCcCCccCC-----CccCCCCCCEEEccCCc---CcccCCccc-------CCCCCCcEEeccc
Q 035831 132 FPAELGLLTDLALFHVNSNRFCGIIP-----DFSDWKLMFEFDVSNNR---LVGSFPRVV-------LSWPSLKFLDLRY 196 (443)
Q Consensus 132 ~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~l~~L~~L~Ls~n~---l~~~~~~~l-------~~l~~L~~L~L~~ 196 (443)
+...+..+++|++|+|++|++..... .+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555556666666666666655321 35556666666666643 333334333 5566666666666
Q ss_pred ccCCCC----CCCcccCC-CCCEEEccCCcccccCCccccC--------------CccceeeeccCCCC-Cccc---hhh
Q 035831 197 NNFEGE----LPCDLFDM-KLDALFLNNNRFSYSIPEKLGR--------------STVSVVTFAHNNFN-GCIP---RSI 253 (443)
Q Consensus 197 n~l~~~----~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~L~~n~l~-~~~~---~~l 253 (443)
|.+++. ++..+... +|++|+|++|.++...+..+.. .+|++|++++|++. +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 666642 33333332 6666666666664333322221 46677777777665 2233 355
Q ss_pred hcCCcCceeeccCcccCc-----cCccccCCCCCccEEEeeCCcCC----cCCchhccCCCCCceEEcccccCCcc----
Q 035831 254 GNMQNLNEIILSDNKLSG-----CFPSEIGSLKNLRVFDVSSNLFH----GNVPQSFSSLESIQTLILSHNQLTGF---- 320 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~---- 320 (443)
..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..++..+..+++|++|+|++|.|++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 566777777777777662 22335666677777777777774 35566666777777777777777654
Q ss_pred Cchhhc--CCCCCCEEEecCCcCCC----CCCCCC-CCCCcCceeeCCCCCCCCCc
Q 035831 321 VSEQIC--KLPSLSNFTFSYNYFQG----LGNECI-PGSKVNSAFDDASNCLAERP 369 (443)
Q Consensus 321 ~~~~l~--~l~~L~~L~Ls~N~l~~----~~~~~~-~~~~~L~~L~l~~N~l~~~p 369 (443)
++..+. .+++|++|++++|.|++ ..+..+ ..+++|+.|++++|.+++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 344443 36777777777777766 234334 44567777777777776554
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=203.56 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=178.7
Q ss_pred CcEEEEEcCCCCCcccCch---hhcCCCCCCEEEccCCcCCccCC-Cc--cCCCCCCEEEccCCcCcccCC----cccCC
Q 035831 116 TVVAGIDLNGNDIAGSFPA---ELGLLTDLALFHVNSNRFCGIIP-DF--SDWKLMFEFDVSNNRLVGSFP----RVVLS 185 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~-~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~ 185 (443)
..++.+++.++.++...-. .+..+++|++|++++|++.+..+ .+ ..+++|++|+|++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467888888887632111 12345679999999999998887 66 899999999999999987555 44567
Q ss_pred CCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCccccc--CC-cc-c-cCCccceeeeccCCCCCccc--h-hhhcC
Q 035831 186 WPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYS--IP-EK-L-GRSTVSVVTFAHNNFNGCIP--R-SIGNM 256 (443)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~--~~-~~-~-~~~~L~~L~L~~n~l~~~~~--~-~l~~l 256 (443)
+++|++|+|++|.+.+..+..+... +|++|++++|++.+. ++ .. + ...+|++|++++|+++.... . .++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 8999999999999986666677665 999999999998642 21 22 1 34789999999999973221 1 35788
Q ss_pred CcCceeeccCcccCccCccccCCC---CCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCE
Q 035831 257 QNLNEIILSDNKLSGCFPSEIGSL---KNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSN 333 (443)
Q Consensus 257 ~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 333 (443)
++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. +. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998778777776 69999999999999 6777664 7999999999999975 32 678899999
Q ss_pred EEecCCcCCCC
Q 035831 334 FTFSYNYFQGL 344 (443)
Q Consensus 334 L~Ls~N~l~~~ 344 (443)
|++++|+|+..
T Consensus 299 L~L~~N~l~~~ 309 (310)
T 4glp_A 299 LTLDGNPFLVP 309 (310)
T ss_dssp EECSSTTTSCC
T ss_pred EECcCCCCCCC
Confidence 99999999763
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=6e-23 Score=195.54 Aligned_cols=193 Identities=18% Similarity=0.332 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+++|++|++++|.++. ++ .+..+++|++|++++|++.++.+ +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 4567777777777764 33 56777777777777777776665 77777777777777777642 25667777777777
Q ss_pred ccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 195 RYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
++|.++ .++. +... +|++|++++| ++.+..+ +..+++|++|++++|++++ +
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n-----------------------~l~~~~~--l~~l~~L~~L~l~~n~l~~-~ 166 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLN-----------------------QITNISP--LAGLTNLQYLSIGNAQVSD-L 166 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSS-----------------------CCCCCGG--GGGCTTCCEEECCSSCCCC-C
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCC-----------------------ccCcCcc--ccCCCCccEEEccCCcCCC-C
Confidence 777766 2332 2222 4555554444 4443322 6677778888888887774 3
Q ss_pred ccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCC
Q 035831 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+. +..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++..
T Consensus 167 ~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 167 TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 33 7777888888888888874332 677778888888888887654 3677888888888888887643
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.6e-22 Score=186.73 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=146.0
Q ss_pred CcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCc
Q 035831 189 LKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDN 267 (443)
Q Consensus 189 L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 267 (443)
.++++++++.++ .+|..+. .++++|++++|.+++..+..+.. .+|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 445555555555 4444433 35556666666665554444433 56777777777777777778899999999999999
Q ss_pred ccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCC
Q 035831 268 KLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNE 347 (443)
Q Consensus 268 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 347 (443)
++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++++.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99977778889999999999999999977777789999999999999999988888899999999999999999999998
Q ss_pred CCCCCCcCceeeCCCCCCCCC
Q 035831 348 CIPGSKVNSAFDDASNCLAER 368 (443)
Q Consensus 348 ~~~~~~~L~~L~l~~N~l~~~ 368 (443)
.+..+++|+.|++++|++.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 999999999999999999876
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=5.6e-23 Score=195.75 Aligned_cols=214 Identities=12% Similarity=0.241 Sum_probs=168.7
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccC
Q 035831 120 GIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNF 199 (443)
Q Consensus 120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 199 (443)
.+.+..+.+++.. .+..+++|++|++++|++..+. .+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3455666665432 3556788999999999888764 68888999999999999885443 88888999999999888
Q ss_pred CCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccC
Q 035831 200 EGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIG 278 (443)
Q Consensus 200 ~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 278 (443)
+ .++ .+... +|++|++++|++ .+. + .+..+++|++|++++|.+++. +. +.
T Consensus 98 ~-~~~-~~~~l~~L~~L~l~~n~l-----------------------~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~ 148 (308)
T 1h6u_A 98 K-NVS-AIAGLQSIKTLDLTSTQI-----------------------TDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LA 148 (308)
T ss_dssp S-CCG-GGTTCTTCCEEECTTSCC-----------------------CCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GG
T ss_pred C-Cch-hhcCCCCCCEEECCCCCC-----------------------CCc-h-hhcCCCCCCEEECCCCccCcC-cc-cc
Confidence 7 333 23222 555555555544 432 2 388899999999999999954 33 88
Q ss_pred CCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCcee
Q 035831 279 SLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAF 358 (443)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L 358 (443)
.+++|++|++++|++++ ++. +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|
T Consensus 149 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 99999999999999995 443 8999999999999999997654 8899999999999999998874 8889999999
Q ss_pred eCCCCCCCCCccccc
Q 035831 359 DDASNCLAERPSQKW 373 (443)
Q Consensus 359 ~l~~N~l~~~p~~~~ 373 (443)
++++|++++.|....
T Consensus 223 ~l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 223 TLTNQTITNQPVFYN 237 (308)
T ss_dssp EEEEEEEECCCEECC
T ss_pred EccCCeeecCCeeec
Confidence 999999998776443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.9e-24 Score=207.82 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=184.1
Q ss_pred CcEEEEEcCCCCCcccCc----hhhcCCC-CCCEEEccCCcCCccCC-CccCC-----CCCCEEEccCCcCcccCCccc-
Q 035831 116 TVVAGIDLNGNDIAGSFP----AELGLLT-DLALFHVNSNRFCGIIP-DFSDW-----KLMFEFDVSNNRLVGSFPRVV- 183 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~-~~~~l-----~~L~~L~Ls~n~l~~~~~~~l- 183 (443)
.+|++|||++|.+++..+ ..|.+++ +|++|+|++|++++... .+..+ ++|++|+|++|++++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999998777 7888998 99999999999998866 56554 999999999999997766644
Q ss_pred ---CCC-CCCcEEecccccCCCCCCCccc----C--CCCCEEEccCCcccccCCccc----cC--CccceeeeccCCCCC
Q 035831 184 ---LSW-PSLKFLDLRYNNFEGELPCDLF----D--MKLDALFLNNNRFSYSIPEKL----GR--STVSVVTFAHNNFNG 247 (443)
Q Consensus 184 ---~~l-~~L~~L~L~~n~l~~~~~~~~~----~--~~L~~L~L~~n~l~~~~~~~~----~~--~~L~~L~L~~n~l~~ 247 (443)
..+ ++|++|+|++|.+++..+..+. . .+|++|++++|.+++.....+ .. .+|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 444 8999999999999865544432 2 489999999999986544443 22 389999999999988
Q ss_pred ccchhhh----cC-CcCceeeccCcccCcc----CccccCC-CCCccEEEeeCCcCCcCCc----hhccCCCCCceEEcc
Q 035831 248 CIPRSIG----NM-QNLNEIILSDNKLSGC----FPSEIGS-LKNLRVFDVSSNLFHGNVP----QSFSSLESIQTLILS 313 (443)
Q Consensus 248 ~~~~~l~----~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls 313 (443)
..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 7765544 44 6999999999999853 4455555 4699999999999987554 345677999999999
Q ss_pred cccCCccCc-------hhhcCCCCCCEEEecCCcCCCCC
Q 035831 314 HNQLTGFVS-------EQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 314 ~N~l~~~~~-------~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+|.+.+..+ ..+..+++|+.||+++|++.+..
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 999665433 35677889999999999998763
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.3e-24 Score=213.72 Aligned_cols=232 Identities=20% Similarity=0.237 Sum_probs=188.0
Q ss_pred CCcEEEEEcCCCCCcccCc----hhhcCCCCCCEEEccCCcCCc---cCC-C-------ccCCCCCCEEEccCCcCcc--
Q 035831 115 ITVVAGIDLNGNDIAGSFP----AELGLLTDLALFHVNSNRFCG---IIP-D-------FSDWKLMFEFDVSNNRLVG-- 177 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~---~~~-~-------~~~l~~L~~L~Ls~n~l~~-- 177 (443)
+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.. ..+ . +..+++|++|+|++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3678999999999987644 447789999999999975543 323 3 4789999999999999987
Q ss_pred --cCCcccCCCCCCcEEecccccCCCCCCCcccC--------------CCCCEEEccCCccc-ccCC---ccc-cCCccc
Q 035831 178 --SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFD--------------MKLDALFLNNNRFS-YSIP---EKL-GRSTVS 236 (443)
Q Consensus 178 --~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~L~~n~l~-~~~~---~~~-~~~~L~ 236 (443)
.++..+..+++|++|+|++|.++...+..+.. .+|++|++++|+++ +.++ ..+ ...+|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 46778889999999999999997443333332 58999999999997 3333 222 336899
Q ss_pred eeeeccCCCCC-----ccchhhhcCCcCceeeccCcccC----ccCccccCCCCCccEEEeeCCcCCcC----Cchhcc-
Q 035831 237 VVTFAHNNFNG-----CIPRSIGNMQNLNEIILSDNKLS----GCFPSEIGSLKNLRVFDVSSNLFHGN----VPQSFS- 302 (443)
Q Consensus 237 ~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~- 302 (443)
+|++++|++.. ..+..+..+++|++|+|++|.++ +.++..+..+++|++|+|++|.+++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999999973 23447889999999999999996 56788899999999999999999865 466663
Q ss_pred -CCCCCceEEcccccCCc----cCchhh-cCCCCCCEEEecCCcCCCCCC
Q 035831 303 -SLESIQTLILSHNQLTG----FVSEQI-CKLPSLSNFTFSYNYFQGLGN 346 (443)
Q Consensus 303 -~l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~~~~~ 346 (443)
.+++|++|+|++|.|++ .++..+ .++++|++|++++|++++..+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 48999999999999998 366666 668999999999999998763
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.5e-22 Score=185.55 Aligned_cols=185 Identities=14% Similarity=0.213 Sum_probs=153.4
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCCcEEeccccc-CCCCCCC-cccCC-CCCEEEccCCcccccCCccccCCccceee
Q 035831 163 KLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNN-FEGELPC-DLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVT 239 (443)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~-~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 239 (443)
.+|++|++++|++++..+..|.++++|++|++++|. ++ .++. .+... +|++|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~-------------------- 89 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRN-------------------- 89 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEE--------------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCC--------------------
Confidence 389999999999998877789999999999999997 77 4433 33332 555555544
Q ss_pred eccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCcc---EEEeeCC-cCCcCCchhccCCCCCc-eEEccc
Q 035831 240 FAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLR---VFDVSSN-LFHGNVPQSFSSLESIQ-TLILSH 314 (443)
Q Consensus 240 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~ 314 (443)
.|++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++
T Consensus 90 --~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 90 --TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp --ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred --CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 044444555678889999999999999995 665 88888888 9999999 99977777899999999 999999
Q ss_pred ccCCccCchhhcCCCCCCEEEecCCc-CCCCCCCCCCCC-CcCceeeCCCCCCCCCccccc
Q 035831 315 NQLTGFVSEQICKLPSLSNFTFSYNY-FQGLGNECIPGS-KVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 315 N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~~-~~L~~L~l~~N~l~~~p~~~~ 373 (443)
|+++.+.+..+.. ++|++|++++|+ ++++.+..+..+ ++|+.|++++|.|+++|...+
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 9999666556655 899999999995 999988999999 999999999999999987644
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.3e-22 Score=207.57 Aligned_cols=197 Identities=22% Similarity=0.375 Sum_probs=147.6
Q ss_pred cccce-ecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCccc
Q 035831 100 SYNGV-FCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGS 178 (443)
Q Consensus 100 ~~~gv-~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~ 178 (443)
.|.|+ .|.. .+++.|+|++|++++ +|..+ +++|++|+|++|+|+.++ ..+++|++|+|++|+|++
T Consensus 49 ~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLI-------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhcccccc-------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-
Confidence 68888 6753 468999999999996 66655 378999999999999665 557899999999999986
Q ss_pred CCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCc
Q 035831 179 FPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQN 258 (443)
Q Consensus 179 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 258 (443)
+|. +.. +|++|+|++|.+++ +|. ...+|++|++++|.+++ +|. ...+|++|++++|++++ +|. |. ++
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~ 181 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ES 181 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TT
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CC
Confidence 666 655 89999999999984 776 34588899999988884 555 34677888888887775 444 54 77
Q ss_pred CceeeccCcccCccCccccCCCCCc-------cEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCC
Q 035831 259 LNEIILSDNKLSGCFPSEIGSLKNL-------RVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKL 328 (443)
Q Consensus 259 L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 328 (443)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 182 L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 182 LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 788888888777 5555 443 56 77777777777 566666667777777777777777766666554
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=5.7e-22 Score=192.24 Aligned_cols=236 Identities=16% Similarity=0.150 Sum_probs=124.7
Q ss_pred CcccceecCCCC--CCC--CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccC-C-CccCCCCCCE-EEcc
Q 035831 99 CSYNGVFCAPAL--DDP--NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGII-P-DFSDWKLMFE-FDVS 171 (443)
Q Consensus 99 c~~~gv~c~~~~--~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~-~~~~l~~L~~-L~Ls 171 (443)
|.+..|.|.... ..+ -.+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ . +|.+++++++ +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 556666664321 110 1245677777777777555556777777777777777765533 3 5677766654 4555
Q ss_pred CCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccC-CCCCEEEccC-CcccccCCccccC--CccceeeeccCCCCC
Q 035831 172 NNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFD-MKLDALFLNN-NRFSYSIPEKLGR--STVSVVTFAHNNFNG 247 (443)
Q Consensus 172 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~--~~L~~L~L~~n~l~~ 247 (443)
+|++++..+..|..+++|++|++++|+++...+..+.. .++..|++.+ +++.......+.. ..++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 67777666667777777777777777776322222222 2556666644 3444222222222 235556666666653
Q ss_pred ccchhhhcCCcCceeeccC-cccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhc
Q 035831 248 CIPRSIGNMQNLNEIILSD-NKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQIC 326 (443)
Q Consensus 248 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~ 326 (443)
. +.......+|++|++++ |.++...+..|..+++|++|||++|+|+...+.. +.+|+.|.+.++.--..+| .+.
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 3 22222344566666553 4444222234555666666666666665322222 2344444433332222233 245
Q ss_pred CCCCCCEEEecCC
Q 035831 327 KLPSLSNFTFSYN 339 (443)
Q Consensus 327 ~l~~L~~L~Ls~N 339 (443)
++++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 5556666665544
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.2e-23 Score=199.63 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=185.6
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCcc-CC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGI-IP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
.+++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+ .+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5688999999999977655 66899999999999998864 44 788999999999999999988888999999999999
Q ss_pred cccc-cCCCC-CCCcccCC-CCCEEEccCC-ccccc-CCcccc-CC-ccceeeeccC--CCC-CccchhhhcCCcCceee
Q 035831 194 LRYN-NFEGE-LPCDLFDM-KLDALFLNNN-RFSYS-IPEKLG-RS-TVSVVTFAHN--NFN-GCIPRSIGNMQNLNEII 263 (443)
Q Consensus 194 L~~n-~l~~~-~~~~~~~~-~L~~L~L~~n-~l~~~-~~~~~~-~~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 263 (443)
+++| .+++. ++..+... +|++|++++| .+++. ++..+. .. +|++|++++| .++ +.++..+.++++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67642 44444444 8999999999 88754 344343 36 8999999999 555 45677888999999999
Q ss_pred ccCcc-cCccCccccCCCCCccEEEeeCCc-CCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcC
Q 035831 264 LSDNK-LSGCFPSEIGSLKNLRVFDVSSNL-FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYF 341 (443)
Q Consensus 264 Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 341 (443)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +.......+. .++..|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 99999 777778889999999999999995 33222336788999999999999 5543323332 2366677999999
Q ss_pred CCCCCCCCCC
Q 035831 342 QGLGNECIPG 351 (443)
Q Consensus 342 ~~~~~~~~~~ 351 (443)
++..+..+..
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 9998876654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.3e-21 Score=173.74 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCC
Q 035831 139 LTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFE 200 (443)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 200 (443)
.++|++|++++|+++++.+ .|.++++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3477788888888777766 5777888888888888887666666777788888888877776
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=4.6e-21 Score=185.88 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=183.7
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCC-cccCCCCCCcE-Eecc
Q 035831 119 AGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFP-RVVLSWPSLKF-LDLR 195 (443)
Q Consensus 119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~L~ 195 (443)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+ +|.++++|++|+|++|++.+.++ ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46889999999 677766 4689999999999999988 89999999999999999876555 56888988775 6677
Q ss_pred cccCCCCCCCcccCC-CCCEEEccCCcccccCCccc-cCCccceeeecc-CCCCCccchhhhcCC-cCceeeccCcccCc
Q 035831 196 YNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKL-GRSTVSVVTFAH-NNFNGCIPRSIGNMQ-NLNEIILSDNKLSG 271 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 271 (443)
+|+++...+..+... +|++|++++|++....+..+ ...++..+++.+ +++....+..|..+. .++.|++++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 899995555666655 99999999999985544433 336788888866 566655556677764 6899999999999
Q ss_pred cCccccCCCCCccEEEeeC-CcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCC-cCCCCCCCCC
Q 035831 272 CFPSEIGSLKNLRVFDVSS-NLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYN-YFQGLGNECI 349 (443)
Q Consensus 272 ~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~ 349 (443)
.++.......+|++|++++ |.++...+..|.++++|++|+|++|+|+.+.+..+ .+|+.|.+.++ .++.+ | .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~l-P-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKL-P-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCC-C-CT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcC-C-Cc
Confidence 4555555667899999975 67775555678999999999999999997766554 45666665554 45554 4 37
Q ss_pred CCCCcCceeeCCCCC
Q 035831 350 PGSKVNSAFDDASNC 364 (443)
Q Consensus 350 ~~~~~L~~L~l~~N~ 364 (443)
..+++|+.+++.++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 788999999987653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.1e-20 Score=193.33 Aligned_cols=186 Identities=21% Similarity=0.320 Sum_probs=156.2
Q ss_pred CCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCC
Q 035831 141 DLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNN 220 (443)
Q Consensus 141 ~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n 220 (443)
+|+.|++++|++++++..+ .++|++|+|++|+|+ .+| ..+++|++|+|++|.|++ +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCCC
Confidence 8999999999999976655 378999999999999 566 457999999999999995 887 544 9999999999
Q ss_pred cccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchh
Q 035831 221 RFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300 (443)
Q Consensus 221 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 300 (443)
.+++ +|. ...+|+.|++++|.+++ +|. .+++|++|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|.
T Consensus 131 ~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 131 QLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp CCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred cCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 9996 666 56889999999999986 554 57899999999999995 776 65 89999999999999 6666
Q ss_pred ccCCCCC-------ceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCC
Q 035831 301 FSSLESI-------QTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPG 351 (443)
Q Consensus 301 l~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 351 (443)
+.. +| +.|+|++|+|+. +|..+..+++|+.|++++|.|++..|..+..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 654 77 999999999995 5667777999999999999999887765544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=168.81 Aligned_cols=103 Identities=20% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCcccceecCCCC----CCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccC
Q 035831 98 VCSYNGVFCAPAL----DDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSN 172 (443)
Q Consensus 98 ~c~~~gv~c~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~ 172 (443)
.|.|.++.|.... .....+++++|++++|++++..+..|.++++|++|++++|+++++.+ .|..+++|++|++++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3667777775321 11122345555666555554444445555556666666555555554 455555566666665
Q ss_pred CcCcccCCcccCCCCCCcEEecccccCC
Q 035831 173 NRLVGSFPRVVLSWPSLKFLDLRYNNFE 200 (443)
Q Consensus 173 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 200 (443)
|++++..+..+..+++|++|++++|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 5555444444455555555555555444
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.9e-20 Score=168.04 Aligned_cols=157 Identities=19% Similarity=0.235 Sum_probs=120.8
Q ss_pred EEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcC
Q 035831 214 ALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLF 293 (443)
Q Consensus 214 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 293 (443)
.++++++.++ .+|..+. ..+++|++++|++.+..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|
T Consensus 15 ~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3444444443 3333332 4566666666666656666788888888888888888877788888888899999999988
Q ss_pred CcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccc
Q 035831 294 HGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQK 372 (443)
Q Consensus 294 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~ 372 (443)
++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|+++.+..+..+++|+.|++++|++.+...-.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 8666666788888999999999988888888888889999999999998888888888888999999988887654433
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.7e-20 Score=177.08 Aligned_cols=171 Identities=21% Similarity=0.307 Sum_probs=85.1
Q ss_pred CCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccC-CCCCEEE
Q 035831 138 LLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFD-MKLDALF 216 (443)
Q Consensus 138 ~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~ 216 (443)
.+++|++|++++|.+..+. .+..+++|++|++++|++++..+ +..+++|++|++++|.++ .++. +.. .+|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEE
Confidence 3444555555555544432 34445555555555555553222 555555555555555554 2222 222 1444444
Q ss_pred ccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcC
Q 035831 217 LNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN 296 (443)
Q Consensus 217 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 296 (443)
+++|++++ + ..+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 119 L~~n~i~~-~------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 119 LEHNGISD-I------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CTTSCCCC-C------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCCC-C------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 44444431 1 2244455555555555555532 3455555566666666655533
Q ss_pred CchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 297 VPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 297 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
.+ +..+++|+.|++++|.|++. + .+..+++|+.|++++|+++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 22 55555666666666665543 2 355566666666666665543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.1e-20 Score=183.93 Aligned_cols=179 Identities=22% Similarity=0.181 Sum_probs=143.6
Q ss_pred CcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccc--cCCccceeeeccCCCCCccchhhhcCCcCceeeccC
Q 035831 189 LKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKL--GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSD 266 (443)
Q Consensus 189 L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 266 (443)
-+.++++++.++ .+|..+. ..++.|+|++|++++..+..+ ...+|++|+|++|++.+..+..|.++++|++|+|++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 368899999998 7787554 368899999999987666666 447888999999988877777888888999999999
Q ss_pred cccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhh---cCCCCCCEEEecCCcCCC
Q 035831 267 NKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQI---CKLPSLSNFTFSYNYFQG 343 (443)
Q Consensus 267 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~ 343 (443)
|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+++.+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 98887667778888889999999999887778888888889999999998887666666 568888899999998888
Q ss_pred CCCCCCCCCCc--CceeeCCCCCCCCCc
Q 035831 344 LGNECIPGSKV--NSAFDDASNCLAERP 369 (443)
Q Consensus 344 ~~~~~~~~~~~--L~~L~l~~N~l~~~p 369 (443)
+.+..+..++. ++.|++.+|++.+-.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCc
Confidence 77666666665 477888888887643
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=165.86 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=107.9
Q ss_pred cceeeeccCCCCCccc-hhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcc
Q 035831 235 VSVVTFAHNNFNGCIP-RSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313 (443)
Q Consensus 235 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 313 (443)
+++|++++|++.+..+ ..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555566666554433 347788888888888888887666778888888888888888887777778888888888888
Q ss_pred cccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 314 HNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 314 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+|+|++..+..|..+++|++|++++|+|+++.+..+..+++|+.|++++|.+.+...
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888878888888888888888888888888888888888888888888876544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.3e-20 Score=194.71 Aligned_cols=191 Identities=19% Similarity=0.291 Sum_probs=114.3
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
..+..+++..+.+.+..+ +..+.+|+.|++++|.+..+. .+..+++|++|+|++|++.+..+ +..+++|+.|+|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 344455666666664432 566778888888888887664 57788888888888888875444 7788888888888
Q ss_pred cccCCCCCCCcccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc
Q 035831 196 YNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP 274 (443)
Q Consensus 196 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 274 (443)
+|.+. .++ .+..+ +|++|+|++|.+.+ ++ .+..+++|+.|+|++|++++.
T Consensus 96 ~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~------------------------~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 96 ENKIK-DLS-SLKDLKKLKSLSLEHNGISD-IN------------------------GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SSCCC-CCT-TSTTCTTCCEEECTTSCCCC-CG------------------------GGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCC-CCh-hhccCCCCCEEEecCCCCCC-Cc------------------------cccCCCccCEEECCCCccCCc--
Confidence 88887 344 33333 66677776666652 22 244445555555555555432
Q ss_pred cccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 275 SEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 275 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
..+..+++|+.|+|++|+|.+..+ +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+.+.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 344455555555555555553333 44555555555555555543 2345555555555555555444
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.3e-20 Score=180.62 Aligned_cols=176 Identities=18% Similarity=0.196 Sum_probs=145.5
Q ss_pred CEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCccc-C-CCCCEEEccCCcccccCCccccC-Cccceeeecc
Q 035831 166 FEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLF-D-MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAH 242 (443)
Q Consensus 166 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 242 (443)
+.+++++++++ .+|..+. ..++.|+|++|+|++..+..+. . .+|++|+|++|+|++..+..+.. .+|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68999999998 5666554 4689999999999954444453 4 39999999999999766666654 7899999999
Q ss_pred CCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhc---cCCCCCceEEcccccCCc
Q 035831 243 NNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSF---SSLESIQTLILSHNQLTG 319 (443)
Q Consensus 243 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~ 319 (443)
|++.+..+..|.++.+|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998777789999999999999999998888899999999999999999996545445 568999999999999998
Q ss_pred cCchhhcCCCC--CCEEEecCCcCCCC
Q 035831 320 FVSEQICKLPS--LSNFTFSYNYFQGL 344 (443)
Q Consensus 320 ~~~~~l~~l~~--L~~L~Ls~N~l~~~ 344 (443)
+.+..+..++. ++.|++++|.+...
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCHHHhhhccHhhcceEEecCCCccCC
Confidence 87788888886 48899999998753
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=6.1e-20 Score=173.24 Aligned_cols=171 Identities=20% Similarity=0.348 Sum_probs=129.5
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
.+++|+.|++++|.+++. ..+..+++|++|++++|+++++.+ +.++++|++|++++|++++ + ..+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 357799999999999854 358999999999999999998876 9999999999999999985 3 3499999999999
Q ss_pred cccccCCCCCCCcccC-CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc
Q 035831 194 LRYNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
+++|++++ ++ .+.. .+|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 119 L~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 119 LEHNGISD-IN-GLVHLPQLESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CTTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc-------------------------hhhccCCCCCEEEccCCccccc
Confidence 99999984 43 3433 3788888887777631 3455666777777777777643
Q ss_pred CccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCcc
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGF 320 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 320 (443)
.+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 32 6667777777777777763 33 366677777777777776643
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.2e-19 Score=162.25 Aligned_cols=162 Identities=24% Similarity=0.290 Sum_probs=106.7
Q ss_pred CCCCCCCCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEE
Q 035831 91 NWVDNTDVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFD 169 (443)
Q Consensus 91 ~w~~~~~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~ 169 (443)
.|..+...|+|.++.|.. ++++ .+|..+. ++|++|+|++|++.++.+ .|.++++|++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCEEeCCEeEccC-----------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 344477789998888753 3343 3444332 778888888888888876 788888888888
Q ss_pred ccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCcc
Q 035831 170 VSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249 (443)
Q Consensus 170 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 249 (443)
|++|+|+...+..|..+++|++|+|++|++++ ++.
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~-------------------------------------------- 105 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPS-------------------------------------------- 105 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT--------------------------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cCh--------------------------------------------
Confidence 88888876666667888888888888888772 221
Q ss_pred chhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCc
Q 035831 250 PRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTG 319 (443)
Q Consensus 250 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 319 (443)
..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++++|.+..
T Consensus 106 -~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 106 -AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 22344555555555555555 455555556666666666666664444555666666666666666654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.9e-19 Score=161.68 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=122.0
Q ss_pred CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeC
Q 035831 211 KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSS 290 (443)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 290 (443)
..+.++.+++.++ .+|..+. .++++|++++|++.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3445555555554 4444333 5677777777777777777888888899999999988855556678888899999999
Q ss_pred CcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCc
Q 035831 291 NLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERP 369 (443)
Q Consensus 291 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p 369 (443)
|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|++++|+|+++.+..+..+++|+.|++++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9888766777888889999999999888 55677888889999999999998888888888888999999999887654
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=4.8e-22 Score=206.17 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCC---------------------------ccCCCccCCCCCCE
Q 035831 115 ITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFC---------------------------GIIPDFSDWKLMFE 167 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---------------------------~~~~~~~~l~~L~~ 167 (443)
+++|++|++++|.+.+ ++..+.++++|++|++++.... .+...+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 3567788888877764 4566666777777777642211 11112334455555
Q ss_pred EEccCCcCcccCC-cccCCCCCCcEEecccccCCCCCCCcc-cC-CCCCEEEccC-----------CcccccCCccc--c
Q 035831 168 FDVSNNRLVGSFP-RVVLSWPSLKFLDLRYNNFEGELPCDL-FD-MKLDALFLNN-----------NRFSYSIPEKL--G 231 (443)
Q Consensus 168 L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~-~~L~~L~L~~-----------n~l~~~~~~~~--~ 231 (443)
|+|++|.+++... ..+..+++|++|+++ +.+.......+ .. .+|++|++++ |.+++.....+ .
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 5555555443222 224555566666655 22221111111 11 2677777772 44443211111 2
Q ss_pred CCccceeeeccCCCCCccchhhhc-CCcCceeecc----CcccCcc-----CccccCCCCCccEEEeeCCc--CCcCCch
Q 035831 232 RSTVSVVTFAHNNFNGCIPRSIGN-MQNLNEIILS----DNKLSGC-----FPSEIGSLKNLRVFDVSSNL--FHGNVPQ 299 (443)
Q Consensus 232 ~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~ 299 (443)
..+|++|+++.|++++.....+.. +++|++|+++ .|.+++. ++..+..+++|++|+++++. +++....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 367788888777777666666655 7788888885 5666642 23335567888888887533 5544444
Q ss_pred hcc-CCCCCceEEcccccCCcc-CchhhcCCCCCCEEEecCCcCCCCCC-CCCCCCCcCceeeCCCCCCCCCccc
Q 035831 300 SFS-SLESIQTLILSHNQLTGF-VSEQICKLPSLSNFTFSYNYFQGLGN-ECIPGSKVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 300 ~l~-~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~p~~ 371 (443)
.+. .+++|++|++++|++++. ++..+..+++|++|++++|.|++... ..+..+++|+.|++++|+++.....
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 443 377899999999988763 34456778899999999998865432 2334678899999999988765433
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.8e-19 Score=160.69 Aligned_cols=152 Identities=18% Similarity=0.289 Sum_probs=112.7
Q ss_pred EEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCccc
Q 035831 191 FLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKL 269 (443)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 269 (443)
.++++++.++ .+|..+. .++++|++++|++++..+..+.. .+|++|+|++|++.+..+..|.++++|++|+|++|+|
T Consensus 15 ~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3444444444 4443332 34555555555555433333432 5667777777777767778888899999999999999
Q ss_pred CccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 270 SGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 270 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|.+...
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 865556678899999999999999988888899999999999999999988888888899999999999988763
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=160.71 Aligned_cols=153 Identities=23% Similarity=0.269 Sum_probs=110.8
Q ss_pred EEecccccCCCCCCCcccCCCCCEEEccCCcccccCCc-cc-cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcc
Q 035831 191 FLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPE-KL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNK 268 (443)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 268 (443)
.+++++|.++ .+|..+. ..+++|++++|++++..+. .+ ...+|++|++++|++++..+..|.++++|++|+|++|+
T Consensus 15 ~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 3444444444 3333221 1334555555555433232 22 23556667777777766666678888899999999999
Q ss_pred cCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCC
Q 035831 269 LSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 269 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.+.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 98777777888999999999999998887888888899999999999999888888888999999999999887653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=5.4e-20 Score=170.95 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=117.4
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
++.+++.++++++.+++.. .+..+++|++|++++|+++.+. .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 3456777888999888543 5788999999999999998765 78889999999999999986544 88999999999
Q ss_pred cccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 194 LRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
+++|+++ .++.... .+|++|++++|++++ ++ .+..+++|++|++++|++++ +
T Consensus 92 L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~------------------------~l~~l~~L~~L~Ls~N~i~~-~ 143 (263)
T 1xeu_A 92 VNRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TD------------------------SLIHLKNLEILSIRNNKLKS-I 143 (263)
T ss_dssp CCSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SG------------------------GGTTCTTCCEEECTTSCCCB-C
T ss_pred CCCCccC-CcCcccc-CcccEEEccCCccCC-Ch------------------------hhcCcccccEEECCCCcCCC-C
Confidence 9999988 4554333 566666666666652 22 34555555666666665553 2
Q ss_pred ccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCcc
Q 035831 274 PSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGF 320 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 320 (443)
+ .+..+++|++|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 455555666666666665543 4455555666666666655543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.3e-22 Score=208.31 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=124.9
Q ss_pred cCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCc-------------CcccCCcccCCCCCCcEEe-cccccCCCC
Q 035831 137 GLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNR-------------LVGSFPRVVLSWPSLKFLD-LRYNNFEGE 202 (443)
Q Consensus 137 ~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~l~~L~~L~-L~~n~l~~~ 202 (443)
..+++|+.|+|++|++..++..++.+++|++|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 34455555555555555443355555555555554443 2333444444444555554 3443322
Q ss_pred CCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCC
Q 035831 203 LPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKN 282 (443)
Q Consensus 203 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 282 (443)
.|+.+.+++|.++.. ....|+.|++++|++++ +|. |+.+++|+.|+|++|.|+ .+|..++.+++
T Consensus 424 --------~L~~l~l~~n~i~~l-----~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKM-----EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-----HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred --------hhhhhhhhccccccc-----CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 122333334444311 11246777777777775 454 777788888888888887 67777778888
Q ss_pred ccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccC-chhhcCCCCCCEEEecCCcCCCCCCCC---CCCCCcCcee
Q 035831 283 LRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFV-SEQICKLPSLSNFTFSYNYFQGLGNEC---IPGSKVNSAF 358 (443)
Q Consensus 283 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~~~~L~~L 358 (443)
|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|++++|.|++.++.. +..+++|+.|
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 8888888888874 55 6777788888888888887766 777777888888888888887765532 1235666666
Q ss_pred eC
Q 035831 359 DD 360 (443)
Q Consensus 359 ~l 360 (443)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=6e-19 Score=182.32 Aligned_cols=170 Identities=21% Similarity=0.358 Sum_probs=128.5
Q ss_pred CCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEe
Q 035831 114 NITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLD 193 (443)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 193 (443)
.+.+|+.|++++|.+... + .+..+++|+.|+|++|++.++.+ +..+++|++|+|++|.+.+ ++ .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 457789999999999854 3 69999999999999999998876 8999999999999999985 33 789999999999
Q ss_pred cccccCCCCCCCcccC-CCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCcc
Q 035831 194 LRYNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGC 272 (443)
Q Consensus 194 L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 272 (443)
|++|.+. .++. +.. .+|+.|+|++|.+++. +......+|+.|+|++|.+.+..+ +..+++|+.|+|++|.|++
T Consensus 116 Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 116 LEHNGIS-DING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp CTTSCCC-CCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ecCCCCC-CCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 9999999 4543 444 4899999999988743 322233566666666666665544 6666666666666666663
Q ss_pred CccccCCCCCccEEEeeCCcCCc
Q 035831 273 FPSEIGSLKNLRVFDVSSNLFHG 295 (443)
Q Consensus 273 ~p~~l~~l~~L~~L~Ls~N~l~~ 295 (443)
+ ..+..+++|+.|+|++|.+.+
T Consensus 190 l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C-GGGTTCTTCSEEECCSEEEEC
T ss_pred C-hHHccCCCCCEEEccCCcCcC
Confidence 2 346666666666666666654
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=5.3e-20 Score=194.65 Aligned_cols=210 Identities=20% Similarity=0.240 Sum_probs=85.4
Q ss_pred HHHHHHHhccCCCCCCCCCCCC-CCCCCcccceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCc
Q 035831 73 ALQAFKKSIYSDPFNTTANWVD-NTDVCSYNGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNR 151 (443)
Q Consensus 73 ~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 151 (443)
++..+........+.....|.. ....+.|.+..+.. ++++.|+|.+|.+... +..+ |+.++|+.|.
T Consensus 136 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 136 ALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS 202 (727)
T ss_dssp HHHHHHHHHHHHHTTC----------------------------------------------------------------
T ss_pred hhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence 4444444443333445556642 33345677766643 5688999999988853 3333 3334444443
Q ss_pred CCc---------cCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCC
Q 035831 152 FCG---------IIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNN 220 (443)
Q Consensus 152 i~~---------~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n 220 (443)
|.+ +.+ .|..+..|+.|+|++|.+. .++..+..+++|++|+|++|.|+ .+|..+..+ +|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 332 222 5667777777777777776 55555667777777777777777 666655544 6666666666
Q ss_pred cccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchh
Q 035831 221 RFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300 (443)
Q Consensus 221 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 300 (443)
.|+ . +|..|+++.+|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|..
T Consensus 281 ~l~-~-----------------------lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 281 RLT-S-----------------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CCS-S-----------------------CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred cCC-c-----------------------cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 665 3 3444555555555555555554 44555555555555555555555555544
Q ss_pred ccCCCC-CceEEcccccCCccCc
Q 035831 301 FSSLES-IQTLILSHNQLTGFVS 322 (443)
Q Consensus 301 l~~l~~-L~~L~Ls~N~l~~~~~ 322 (443)
+..+.. +..++|++|.+++.+|
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HhhcchhhhHHhhccCcccCcCc
Confidence 433211 1224555555555444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=7.5e-20 Score=169.99 Aligned_cols=174 Identities=19% Similarity=0.260 Sum_probs=135.8
Q ss_pred CCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEE
Q 035831 138 LLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALF 216 (443)
Q Consensus 138 ~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~ 216 (443)
++.++..+++++|.++++. .+..+++|++|++++|.++. ++ .+..+++|++|++++|+++ .++. +... +|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEE
Confidence 3556677788888887766 57788888888888888873 44 6778888888888888888 3333 3333 666666
Q ss_pred ccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcC
Q 035831 217 LNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN 296 (443)
Q Consensus 217 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 296 (443)
+++|+++ + ++. +.. .+|++|++++|++++ + ..+..+++|++|++++|++++.
T Consensus 92 L~~N~l~-----------------------~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 92 VNRNRLK-----------------------N-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CCSSCCS-----------------------C-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCCccC-----------------------C-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC
Confidence 6666655 2 222 222 789999999999995 4 3689999999999999999964
Q ss_pred CchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCC
Q 035831 297 VPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNEC 348 (443)
Q Consensus 297 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 348 (443)
+ .+..+++|+.|++++|+|++. ..+..+++|+.|++++|.+++.+...
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcccc
Confidence 4 688999999999999999987 67899999999999999998875443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.3e-18 Score=154.33 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=50.1
Q ss_pred hhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCc-CCcCCchhccCCCCCceEEcccccCCccCchhhcCCCC
Q 035831 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNL-FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPS 330 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 330 (443)
.++.+++|++|++++|++++..+..++.+++|++|++++|+ ++ .++ .+..+++|+.|++++|++++.. .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence 34455666666666666665555566666666666666665 44 333 4556666666666666666432 4556666
Q ss_pred CCEEEecCCcCC
Q 035831 331 LSNFTFSYNYFQ 342 (443)
Q Consensus 331 L~~L~Ls~N~l~ 342 (443)
|++|++++|+|.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 666666666654
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=4.1e-21 Score=199.13 Aligned_cols=250 Identities=10% Similarity=-0.008 Sum_probs=183.5
Q ss_pred CCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcCc-ccCCcccCCCCC
Q 035831 112 DPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRLV-GSFPRVVLSWPS 188 (443)
Q Consensus 112 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~ 188 (443)
...+++|+.|+++++... .++..+..+++|++|+|++|.+++... .+..+++|++|+++ +.+. +.++..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 345678888888886443 677778889999999999999765433 36889999999999 4443 334444567899
Q ss_pred CcEEeccc-----------ccCCCCCCCccc--CCCCCEEEccCCcccccCCcccc--CCccceeeec----cCCCCCc-
Q 035831 189 LKFLDLRY-----------NNFEGELPCDLF--DMKLDALFLNNNRFSYSIPEKLG--RSTVSVVTFA----HNNFNGC- 248 (443)
Q Consensus 189 L~~L~L~~-----------n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~----~n~l~~~- 248 (443)
|++|++++ |.+++.....+. ..+|++|+++.|.+++.....++ ..+|++|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999993 555532222221 24899999999999876665554 4789999996 6777763
Q ss_pred ----cchhhhcCCcCceeeccCcc--cCccCccccC-CCCCccEEEeeCCcCCc-CCchhccCCCCCceEEcccccCCcc
Q 035831 249 ----IPRSIGNMQNLNEIILSDNK--LSGCFPSEIG-SLKNLRVFDVSSNLFHG-NVPQSFSSLESIQTLILSHNQLTGF 320 (443)
Q Consensus 249 ----~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ 320 (443)
++..+.++++|++|++++|. +++.....+. .+++|++|++++|++++ .++..+.++++|++|++++|.+++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 44557789999999998543 6655444444 47899999999999986 3455668899999999999998755
Q ss_pred -CchhhcCCCCCCEEEecCCcCCCCCCCCCC-CCCcCceeeCCCC
Q 035831 321 -VSEQICKLPSLSNFTFSYNYFQGLGNECIP-GSKVNSAFDDASN 363 (443)
Q Consensus 321 -~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~l~~N 363 (443)
++..+..+++|++|++++|++++.....+. .++.+....+..+
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 344456789999999999999887555443 4565555544443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=8e-18 Score=149.23 Aligned_cols=129 Identities=14% Similarity=0.221 Sum_probs=107.4
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEc
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL 312 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 312 (443)
.+|++|++++|.+. ....+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 44555555555443 2246888999999999999999878889999999999999999999888899999999999999
Q ss_pred cccc-CCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 313 SHNQ-LTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 313 s~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
++|. ++.. + .+..+++|++|++++|+++++. .+..+++|+.|++++|+|.+
T Consensus 144 ~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 9998 6654 4 6899999999999999999864 68889999999999999864
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.8e-21 Score=197.49 Aligned_cols=203 Identities=16% Similarity=0.146 Sum_probs=163.0
Q ss_pred CCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCc-------------CCccCC-CccCCCCCCEEE-ccCCcCcc
Q 035831 113 PNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNR-------------FCGIIP-DFSDWKLMFEFD-VSNNRLVG 177 (443)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~-~~~~l~~L~~L~-Ls~n~l~~ 177 (443)
...++|+.|+|++|.++ .+|..++++++|+.|++++|. +.+..+ .++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34567888999999998 789999999999999998775 445555 678888999998 6766543
Q ss_pred cCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCC
Q 035831 178 SFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQ 257 (443)
Q Consensus 178 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 257 (443)
+|+.+.+++|.++ .++. ..|+.|++++|.+++ +|......+|+.|+|++|+++ .+|..|++++
T Consensus 424 ----------~L~~l~l~~n~i~-~l~~----~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 ----------DLRSKFLLENSVL-KMEY----ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ----------HHHHHHHHHHHHH-HHHH----TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ----------hhhhhhhhccccc-ccCc----cCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCC
Confidence 4566667777666 2221 247788888888874 565334477888888888888 7788999999
Q ss_pred cCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCC-chhccCCCCCceEEcccccCCccCch---hhcCCCCCCE
Q 035831 258 NLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV-PQSFSSLESIQTLILSHNQLTGFVSE---QICKLPSLSN 333 (443)
Q Consensus 258 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~ 333 (443)
+|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|+|++|.+++.++. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999995 67 8999999999999999999776 99999999999999999999987553 3445899999
Q ss_pred EEe
Q 035831 334 FTF 336 (443)
Q Consensus 334 L~L 336 (443)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.4e-17 Score=145.59 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=61.5
Q ss_pred cceeeeccCCCCCccch-hhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcc
Q 035831 235 VSVVTFAHNNFNGCIPR-SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313 (443)
Q Consensus 235 L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 313 (443)
+++|++++|++.+..+. .|+.+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 34444444444333332 25555666666666666665555556666666666666666665555555556666666666
Q ss_pred cccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 314 HNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 314 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+|+|++..+..+..+++|++|++++|.+++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6666655555555566666666666655543
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.4e-17 Score=159.93 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=86.0
Q ss_pred cCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCc-eEEcccccCCccCchhhcCCCCCCE
Q 035831 255 NMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQ-TLILSHNQLTGFVSEQICKLPSLSN 333 (443)
Q Consensus 255 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~ 333 (443)
.+.+|++|+|++|+++.....+|.++.+|+.+++.+| ++.....+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3788888888888888666677888888888888887 7666677888888888 888888 777777788888888888
Q ss_pred EEecCCcCCCCCCCCCCCCCcCceeeC
Q 035831 334 FTFSYNYFQGLGNECIPGSKVNSAFDD 360 (443)
Q Consensus 334 L~Ls~N~l~~~~~~~~~~~~~L~~L~l 360 (443)
+++++|.++.+...+|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888888888888888887763
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=7e-20 Score=189.88 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=140.6
Q ss_pred CCCCCCEEEccCCcCcccC-CcccCCCCCCcEEecccccCCCCCCCccc--CCCCCEEEccC---------CcccccCCc
Q 035831 161 DWKLMFEFDVSNNRLVGSF-PRVVLSWPSLKFLDLRYNNFEGELPCDLF--DMKLDALFLNN---------NRFSYSIPE 228 (443)
Q Consensus 161 ~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~---------n~l~~~~~~ 228 (443)
.+++|++|+|++|.+++.. ...+..+++|++|++++| ++......+. ..+|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 5688899999988876432 233567888999999887 4322111121 24789998843 444432222
Q ss_pred cc--cCCccceeeeccCCCCCccchhhh-cCCcCceeecc--C----cccCcc-----CccccCCCCCccEEEeeCCcCC
Q 035831 229 KL--GRSTVSVVTFAHNNFNGCIPRSIG-NMQNLNEIILS--D----NKLSGC-----FPSEIGSLKNLRVFDVSSNLFH 294 (443)
Q Consensus 229 ~~--~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~ 294 (443)
.+ +..+|++|.+..|++++.....+. .+++|++|+++ + +.+++. ++..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 246789998888888876666565 58899999998 4 455521 122256678999999977 666
Q ss_pred cCCchhccC-CCCCceEEcccccCCccCchhh-cCCCCCCEEEecCCcCCCCCCC-CCCCCCcCceeeCCCCCCC
Q 035831 295 GNVPQSFSS-LESIQTLILSHNQLTGFVSEQI-CKLPSLSNFTFSYNYFQGLGNE-CIPGSKVNSAFDDASNCLA 366 (443)
Q Consensus 295 ~~~p~~l~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~L~l~~N~l~ 366 (443)
+.....+.. +++|+.|+|++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|.++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555555554 7889999999999887655555 6689999999999998655443 3445789999999999874
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=1.2e-17 Score=144.02 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=110.5
Q ss_pred CccceeeeccCCCC-CccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFN-GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 311 (443)
.++++|++++|++. +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45667777777766 56677778888889999999888854 7788888899999999998876787777788999999
Q ss_pred cccccCCccCc-hhhcCCCCCCEEEecCCcCCCCCC---CCCCCCCcCceeeCCCCCCCCCccc
Q 035831 312 LSHNQLTGFVS-EQICKLPSLSNFTFSYNYFQGLGN---ECIPGSKVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 312 Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~L~~L~l~~N~l~~~p~~ 371 (443)
+++|.|++... ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..+|+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99998887532 678888899999999999888766 4678888999999999988877753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.8e-17 Score=145.10 Aligned_cols=133 Identities=21% Similarity=0.266 Sum_probs=117.6
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCcc-ccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEccc
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPS-EIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSH 314 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 314 (443)
+++++++|+++ .+|..+. .+|++|++++|++++..+. .++.+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 4555443 3899999999999966554 489999999999999999988899999999999999999
Q ss_pred ccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccc
Q 035831 315 NQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQ 371 (443)
Q Consensus 315 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~ 371 (443)
|+|++..+..|.++++|++|++++|+|++..+..+..+++|+.|++++|.+.+...-
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999999998999999999999999999999999999999999999999999875543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.6e-18 Score=183.34 Aligned_cols=192 Identities=16% Similarity=0.217 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCcc---------cCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCC
Q 035831 118 VAGIDLNGNDIAG---------SFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPS 188 (443)
Q Consensus 118 L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 188 (443)
++.++|+.+.|.+ ..+..|..+..|+.|+|++|++..+...+.++++|++|+|++|.|+ .+|..|..+++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 4445555554433 4577899999999999999999977777779999999999999999 88999999999
Q ss_pred CcEEecccccCCCCCCCcccCC-CCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCC-cCceeecc
Q 035831 189 LKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQ-NLNEIILS 265 (443)
Q Consensus 189 L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls 265 (443)
|++|+|++|.|+ .+|..+..+ +|++|+|++|.|+ .+|..++. .+|++|+|++|.+.+.+|..+..+. .+..|+|+
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~ 349 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc
Confidence 999999999999 889988876 9999999999997 67776655 6788888888888888887776542 22347788
Q ss_pred CcccCccCccccCCCCCccEEEeeCC--------cCCcCCchhccCCCCCceEEcccccCC
Q 035831 266 DNKLSGCFPSEIGSLKNLRVFDVSSN--------LFHGNVPQSFSSLESIQTLILSHNQLT 318 (443)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 318 (443)
+|.+++.+|.. |+.|++++| .+.+..+..+..+..++...+++|.+.
T Consensus 350 ~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 350 DNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HCCCCCCCCCC-----------------------------------------------CCC
T ss_pred cCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 88888776654 455566665 233233333444455555566666554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=141.07 Aligned_cols=131 Identities=24% Similarity=0.316 Sum_probs=93.9
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccc
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHN 315 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 315 (443)
+.+++++|++. .+|..+. .+|++|++++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 3343332 46777777777777 56677777777777777777777666667777778888888888
Q ss_pred cCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 316 QLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 316 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+|+++.+..|..+++|++|+|++|+|+++.+..+..+++|+.|++++|.+.+-..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8877777777778888888888888877777777777788888888877765433
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.7e-19 Score=186.90 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=78.9
Q ss_pred cCCcCceeeccCcccCccCccccC-CCCCccEEEee--C----CcCCcC-----CchhccCCCCCceEEcccccCCccCc
Q 035831 255 NMQNLNEIILSDNKLSGCFPSEIG-SLKNLRVFDVS--S----NLFHGN-----VPQSFSSLESIQTLILSHNQLTGFVS 322 (443)
Q Consensus 255 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~~ 322 (443)
.+++|++|.++.|.+++.....+. .+++|+.|+++ + |.+++. ++..+..+++|+.|++++ .+++...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 366777777777777654444443 47788888888 4 555521 122356678888898877 6666555
Q ss_pred hhhcC-CCCCCEEEecCCcCCCCCCCCC-CCCCcCceeeCCCCCCCC
Q 035831 323 EQICK-LPSLSNFTFSYNYFQGLGNECI-PGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 323 ~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~~~~L~~L~l~~N~l~~ 367 (443)
..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 55555 8899999999999977655444 568899999999999854
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=138.14 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=91.1
Q ss_pred ccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcc
Q 035831 234 TVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILS 313 (443)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 313 (443)
.+++|++++|++. .+|..|.++++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4556666666665 556778888899999999999987777788889999999999999987777788889999999999
Q ss_pred cccCCccCchhhcCCCCCCEEEecCCcCCCC
Q 035831 314 HNQLTGFVSEQICKLPSLSNFTFSYNYFQGL 344 (443)
Q Consensus 314 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 344 (443)
+|+|++..+..|..+++|+.|++++|.+...
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9999877777888899999999999988653
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.6e-16 Score=133.90 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=95.3
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccc
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHN 315 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 315 (443)
+.++++++++.. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555555553 33322 257777888888777655556677788888888888887665666777788888888888
Q ss_pred cCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 316 QLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 316 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+|++..+..+..+++|++|++++|+++++++..+..+++|+.|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887777777778888888888888887777767777888888888888777554
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=8.7e-16 Score=133.56 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=101.5
Q ss_pred CEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCc
Q 035831 213 DALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNL 292 (443)
Q Consensus 213 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 292 (443)
+.+++++|+++ .+|..+. .++++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444 3332222 456677777777766666677888999999999999986666677889999999999999
Q ss_pred CCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCC
Q 035831 293 FHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGN 346 (443)
Q Consensus 293 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 346 (443)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 997777778889999999999999998777778889999999999999887543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.8e-16 Score=135.40 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=78.3
Q ss_pred CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCC-chhccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNV-PQSFSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 311 (443)
.+|++|++++|.+.+. ..+..+++|++|++++|++++.++..+..+++|++|++++|++++.. +..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 4455555555555543 55667777888888888777656666666778888888888777432 25677778888888
Q ss_pred cccccCCccCc---hhhcCCCCCCEEEecCCcCCCCC
Q 035831 312 LSHNQLTGFVS---EQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 312 Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+++|.+++..+ ..+..+++|++|++++|.+..+.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88888876655 46777888888888888776653
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=7.8e-17 Score=136.03 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=96.9
Q ss_pred CccceeeeccCCCC-CccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFN-GCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 311 (443)
.++++|++++|.+. +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45667777777776 56666777788888888888888754 6677888888888888888866777777788888888
Q ss_pred cccccCCcc-CchhhcCCCCCCEEEecCCcCCCCCC---CCCCCCCcCceeeCC
Q 035831 312 LSHNQLTGF-VSEQICKLPSLSNFTFSYNYFQGLGN---ECIPGSKVNSAFDDA 361 (443)
Q Consensus 312 Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~L~~L~l~ 361 (443)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888764 34677888888888888888887765 456777788888765
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=4.6e-15 Score=145.86 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=143.5
Q ss_pred cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecc
Q 035831 117 VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLR 195 (443)
Q Consensus 117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 195 (443)
.++.+.+.+ .++.+-..+|.+. +|+.+++..+ ++.+.. +|.++ +|+.+++.+ .++.+...+|.++.+|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344555543 3444555566654 5677776655 555555 66663 566776664 5554555666666777777776
Q ss_pred cccCCCCCCCcccC-CCCCEEEccCCcccccCCccccC-CccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccC
Q 035831 196 YNNFEGELPCDLFD-MKLDALFLNNNRFSYSIPEKLGR-STVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCF 273 (443)
Q Consensus 196 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 273 (443)
+|.++ .++...+. .+|+.+.+..+ +.......|.. .+|+.+++..+ +......+|.+ .+|+.+.+. +.++..-
T Consensus 189 ~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 189 KTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred CCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence 66666 44443333 36666666643 44333333322 45666666653 44344445555 567777763 3444344
Q ss_pred ccccCCCCCccEEEeeCCcCC-----cCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCC
Q 035831 274 PSEIGSLKNLRVFDVSSNLFH-----GNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNEC 348 (443)
Q Consensus 274 p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 348 (443)
..+|.++++|+.+++.+|.+. ......|.++.+|+.+++. +.++.+...+|.++.+|+.+++..| ++.+...+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 556666777777777666554 2445566666777777776 3466555666777777777777443 66666666
Q ss_pred CCCCCcCceeeCCCCCCCCCccccc
Q 035831 349 IPGSKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 349 ~~~~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
|.++ +|+.+++.+|.+..++...|
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred CCCC-CCCEEEEcCCCCcccccccc
Confidence 7666 67777777776666555444
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.6e-16 Score=152.45 Aligned_cols=251 Identities=11% Similarity=0.071 Sum_probs=162.5
Q ss_pred CcEEEEEcCCCCCcccCchhhcC-CCCCCEEEccCCcCC--------------------ccCC-CccC--------CCCC
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGL-LTDLALFHVNSNRFC--------------------GIIP-DFSD--------WKLM 165 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~--------------------~~~~-~~~~--------l~~L 165 (443)
.++++|.++++ +....-..+.. +++|++|||++|+|. .+.. +|.+ +.+|
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 34666666653 21111122333 667777777777777 3334 6667 7788
Q ss_pred CEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCC--CCCEEEccCCcc----cccCCccc-cCCccc-e
Q 035831 166 FEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDM--KLDALFLNNNRF----SYSIPEKL-GRSTVS-V 237 (443)
Q Consensus 166 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~L~~n~l----~~~~~~~~-~~~~L~-~ 237 (443)
++|+|.+ .++.+...+|.++++|+.|++.+|.+. .++...+.- ++..+.+..+.. .......+ ....++ .
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 8888877 777666677777788888888877776 444444433 344443333211 00001111 112233 2
Q ss_pred eeeccCCCCCccchhhh----cCCcCceeeccCcccCccCcccc-CCCCCccEEEeeCCcCCcCCchhccCCCCCceEEc
Q 035831 238 VTFAHNNFNGCIPRSIG----NMQNLNEIILSDNKLSGCFPSEI-GSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLIL 312 (443)
Q Consensus 238 L~L~~n~l~~~~~~~l~----~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 312 (443)
+.+.... .++..+. ...+++.+.+.++-.. .....+ ..+++|+.++|++|+++......|.++.+|+.+++
T Consensus 182 i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 182 IQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred EEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 3332221 1222111 2355566666554222 111112 23789999999999999777788999999999999
Q ss_pred ccccCCccCchhhcCCCCCC-EEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccc
Q 035831 313 SHNQLTGFVSEQICKLPSLS-NFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWAN 375 (443)
Q Consensus 313 s~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~ 375 (443)
.+| +..+...+|.++.+|+ .+++.+ .++.+...+|.++.+|+.+++.+|.++.++...|.+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 998 8888889999999999 999999 899999999999999999999999999998877643
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.9e-16 Score=132.45 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIA-GSFPAELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
+++++|++++|.++ +.++..+..+++|++|++++|+++++ ..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45667777777766 55666666666666666666666655 45556666666666666666545555555555555555
Q ss_pred ccccCC
Q 035831 195 RYNNFE 200 (443)
Q Consensus 195 ~~n~l~ 200 (443)
++|.++
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 555554
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.7e-14 Score=141.79 Aligned_cols=246 Identities=11% Similarity=0.058 Sum_probs=193.2
Q ss_pred CCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCC
Q 035831 109 ALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWP 187 (443)
Q Consensus 109 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 187 (443)
...|.+. +|+.+++.++ ++.+...+|.+. +|+.+++.+ .+..+.. +|.++.+|+.+++++|+++.+....|. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3456564 6889998776 776777788885 799999986 7777777 899999999999999999866666666 58
Q ss_pred CCcEEecccccCCCCCCCc-ccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeecc
Q 035831 188 SLKFLDLRYNNFEGELPCD-LFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILS 265 (443)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~-~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 265 (443)
+|+.+.|..+ ++ .+... +... +|+.+++..+ ++......|...+|+.+.+ .+.+......+|.++.+|+.+++.
T Consensus 204 ~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 9999999854 66 44444 4444 8999999875 5545555666678999999 456666667889999999999998
Q ss_pred CcccC-----ccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCc
Q 035831 266 DNKLS-----GCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNY 340 (443)
Q Consensus 266 ~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 340 (443)
+|.+. .....+|.++++|+.+++.+ .++.....+|.++.+|+.++|..| ++.+...+|.++ +|+.+++++|.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 88765 35567888999999999994 477667788999999999999655 777777889999 99999999999
Q ss_pred CCCCCCCCCCCCC-cCceeeCCCCCCC
Q 035831 341 FQGLGNECIPGSK-VNSAFDDASNCLA 366 (443)
Q Consensus 341 l~~~~~~~~~~~~-~L~~L~l~~N~l~ 366 (443)
+..+....|.+++ .+..+++..+.+.
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CcccccccccCCCCCccEEEeCHHHHH
Confidence 9888888888774 6778887776554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=2.1e-14 Score=123.94 Aligned_cols=109 Identities=20% Similarity=0.169 Sum_probs=84.0
Q ss_pred CceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecC
Q 035831 259 LNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSY 338 (443)
Q Consensus 259 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 338 (443)
.+++++++|+++ .+|..+ .++|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777 466554 36778888888888877677788888888888888888877777777888888888888
Q ss_pred CcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 339 NYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 339 N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
|+|+++.+..+..+++|+.|++++|++.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888777777888888888888888877653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=2.6e-15 Score=130.41 Aligned_cols=18 Identities=22% Similarity=0.021 Sum_probs=9.4
Q ss_pred cCCCCCCcEEecccccCC
Q 035831 183 VLSWPSLKFLDLRYNNFE 200 (443)
Q Consensus 183 l~~l~~L~~L~L~~n~l~ 200 (443)
+..+.+|++|++++|.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~ 32 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP 32 (176)
T ss_dssp EECTTSCEEEECTTSCCC
T ss_pred cCCcCCceEEEeeCCCCc
Confidence 334455555555555555
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.7e-17 Score=145.05 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=32.2
Q ss_pred hhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCc-hhccCCCCCceEEcccccCCcc
Q 035831 252 SIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVP-QSFSSLESIQTLILSHNQLTGF 320 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ 320 (443)
.+..+++|++|++++|++++ ++ .+..+++|++|++++|++++... ..+..+++|++|++++|.+.+.
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 34444555555555555553 22 34445555555555555542111 2344455555555555555433
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=4.2e-15 Score=129.10 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=78.0
Q ss_pred CccceeeeccCCCCCccchhhhcCC-cCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEE
Q 035831 233 STVSVVTFAHNNFNGCIPRSIGNMQ-NLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLI 311 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 311 (443)
.++++|++++|++.. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|+|++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 445555555555553 232 33333 667777777766643 4566666777777777777654444446666777777
Q ss_pred cccccCCccCc-hhhcCCCCCCEEEecCCcCCCCCCC---CCCCCCcCceeeCCCCCCCC
Q 035831 312 LSHNQLTGFVS-EQICKLPSLSNFTFSYNYFQGLGNE---CIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 312 Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~L~~L~l~~N~l~~ 367 (443)
+++|+|..... ..+..+++|+.|++++|.++..... .+..++.|+.||+++|.+..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777754322 2566667777777777777654322 35566667777777666543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.5e-14 Score=123.06 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=79.3
Q ss_pred ceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCC
Q 035831 260 NEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYN 339 (443)
Q Consensus 260 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 339 (443)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777776 5665543 67777777777777666777777777777777777777766666777777777788777
Q ss_pred cCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 340 YFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
+|+++.+..+..+++|+.|++++|.+.+.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7777766667777777788888887776654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=6.5e-17 Score=143.45 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=74.8
Q ss_pred hhcCCCCCCEEEccCCcCCccCCCccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccccCCCCCCCcccCCCCCE
Q 035831 135 ELGLLTDLALFHVNSNRFCGIIPDFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDA 214 (443)
Q Consensus 135 ~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 214 (443)
.|..+++|++|++++|++.+++ .+.++++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-------------- 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-------------- 106 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC--------------
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC--------------
Confidence 6666666666666666666543 5555555555555555555 33444444444455544444444
Q ss_pred EEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCc-cccCCCCCccEEEeeCCcC
Q 035831 215 LFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFP-SEIGSLKNLRVFDVSSNLF 293 (443)
Q Consensus 215 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l 293 (443)
+ ++ .+..+++|++|++++|++++... ..+..+++|++|++++|.+
T Consensus 107 --------------------------------~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 107 --------------------------------S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------------------------------C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------------------------------c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 1 22 35566677777777777763221 3566777777777777777
Q ss_pred CcCCch----------hccCCCCCceEEcccccCC
Q 035831 294 HGNVPQ----------SFSSLESIQTLILSHNQLT 318 (443)
Q Consensus 294 ~~~~p~----------~l~~l~~L~~L~Ls~N~l~ 318 (443)
.+..|. .+..+++|+.|| +|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 654433 245555666554 44443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=5.6e-14 Score=121.28 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=85.0
Q ss_pred cceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEccc
Q 035831 235 VSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSH 314 (443)
Q Consensus 235 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 314 (443)
.+++++++|+++. +|..+ ..+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666653 44444 26788888888888877778888888888888888888876677778888899999999
Q ss_pred ccCCccCchhhcCCCCCCEEEecCCcCCCCC
Q 035831 315 NQLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 315 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
|+|++..+..|..+++|++|+|++|.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9888877777888889999999999887653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.1e-13 Score=119.81 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=79.4
Q ss_pred ceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccc
Q 035831 236 SVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHN 315 (443)
Q Consensus 236 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 315 (443)
+.+++++|++. .+|..+. .+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45556666554 4444443 67788888888888766777888888888888888888655556778888888888888
Q ss_pred cCCccCchhhcCCCCCCEEEecCCcCCCCC
Q 035831 316 QLTGFVSEQICKLPSLSNFTFSYNYFQGLG 345 (443)
Q Consensus 316 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 345 (443)
+|+++.+..|..+++|++|++++|.+....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888776666888888888888888887653
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=2.6e-12 Score=126.23 Aligned_cols=312 Identities=10% Similarity=0.034 Sum_probs=199.2
Q ss_pred ccChHHHHHHHHhhhcCCCCC-CCCC-CCCCcccCCCcccccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Q 035831 24 ALSDAEAAFITRRQLLTLPKD-GKLP-DNFDDEYGLKNKTFANERLKKAYVALQAFKKSIYSDPFNTTANWVDNTDVCSY 101 (443)
Q Consensus 24 ~~~~~~~~~~~~l~~l~l~~~-~~~P-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~ 101 (443)
.+.+.+|..|.+|+.+.+.++ ..+. ..|.++.+|+.+++.++- . .+....+........-.-.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l-~-----------~I~~~aF~~c~~L~~i~~p--- 125 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSV-K-----------MIGRCTFSGCYALKSILLP--- 125 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTC-C-----------EECTTTTTTCTTCCCCCCC---
T ss_pred EhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCc-e-----------Eccchhhcccccchhhccc---
Confidence 466788999999999999877 6665 678899999999886431 0 0101111111111000000
Q ss_pred cceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCC
Q 035831 102 NGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFP 180 (443)
Q Consensus 102 ~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 180 (443)
..+.......|.+..... +.+. ..+......+|.++.+|+.+.+.++ +..+.. +|.++.+|+.+++..+ ++.+..
T Consensus 126 ~~l~~i~~~aF~~~~~~~-~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 126 LMLKSIGVEAFKGCDFKE-ITIP-EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp TTCCEECTTTTTTCCCSE-EECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred Cceeeecceeeecccccc-cccC-ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 011111122233333222 2221 2223344567888888888888765 344555 7888888888888766 554666
Q ss_pred cccCCCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccc-cCCccceeeeccCCCCCccchhhhcCCcC
Q 035831 181 RVVLSWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKL-GRSTVSVVTFAHNNFNGCIPRSIGNMQNL 259 (443)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 259 (443)
..|.++..|+.+.+..+... .....+....|+.+.+..+... .....+ +...++.+.+..+... .....|..+..+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred hhhccccccceeecCCCceE-eehhhcccCCCceEEECCCcee-cccccccccccceeEEcCCCcce-eecccccccccc
Confidence 77888888888887766443 2222333347888877644322 222222 3366777777766433 455667788888
Q ss_pred ceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCC
Q 035831 260 NEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYN 339 (443)
Q Consensus 260 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 339 (443)
+.+....+.+. ...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..|
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 88887766543 245777888999888765 55455677888889999998654 76676788888999999998776
Q ss_pred cCCCCCCCCCCCCCcCceeeCCCC
Q 035831 340 YFQGLGNECIPGSKVNSAFDDASN 363 (443)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~L~l~~N 363 (443)
++.+...+|.++.+|+.+++..+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -ccEehHHHhhCCCCCCEEEECCC
Confidence 77888888999999998888654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.7e-12 Score=125.08 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=69.6
Q ss_pred eeeccCc-ccCccCccccCCCCCccEEEeeC-CcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecC
Q 035831 261 EIILSDN-KLSGCFPSEIGSLKNLRVFDVSS-NLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSY 338 (443)
Q Consensus 261 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 338 (443)
.++++++ +++ .+|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|+++.+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3456665 565 4555 66666666666664 666655556666666777777777777666666666677777777777
Q ss_pred CcCCCCCCCCCCCCCcCceeeCCCCCCCCCcc
Q 035831 339 NYFQGLGNECIPGSKVNSAFDDASNCLAERPS 370 (443)
Q Consensus 339 N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~ 370 (443)
|+|+++++..+..+. |+.|++.+|.+.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 777666665555554 6777777777665544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.4e-14 Score=141.02 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=29.2
Q ss_pred hcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcC----CchhccCCCCCceEEcccccCCc
Q 035831 254 GNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQSFSSLESIQTLILSHNQLTG 319 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 319 (443)
..+++|++|+|++|.|++. +...+...++|+.|+|++|.|++. +...+...++|++|+|++|.|++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4445555555555554421 123333444455555555554431 12222333445555555555443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=5.7e-14 Score=136.67 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=115.1
Q ss_pred CCCCCEEEccCCcCcccCCccc----C-CCCCCcEEecccccCCCCCCCcccCCCCCEEEccCCcccccCCccccCCccc
Q 035831 162 WKLMFEFDVSNNRLVGSFPRVV----L-SWPSLKFLDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVS 236 (443)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~ 236 (443)
++.|++|+|++|.++......+ . ...+|++|+|++|.++......+.. ...+|+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~L~~L~ 129 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---------------------VFLRAR 129 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------HHHTEE
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------HHHhcc
Confidence 3567777777777764333222 2 1256777777777665221111111 012456
Q ss_pred eeeeccCCCCCccchhh-----hcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcC----CchhccC
Q 035831 237 VVTFAHNNFNGCIPRSI-----GNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQSFSS 303 (443)
Q Consensus 237 ~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~ 303 (443)
+|+|++|.+++.....+ ...++|++|+|++|.|++. +...+..+++|++|+|++|.|++. +...+..
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 66666666654433333 2457899999999998742 444557789999999999999853 3556777
Q ss_pred CCCCceEEcccccCCccC----chhhcCCCCCCEEEecCCcCCCCCCCCCCCC---C--cCceee--CCCCCC
Q 035831 304 LESIQTLILSHNQLTGFV----SEQICKLPSLSNFTFSYNYFQGLGNECIPGS---K--VNSAFD--DASNCL 365 (443)
Q Consensus 304 l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~--~L~~L~--l~~N~l 365 (443)
.++|++|+|++|.|++.. ...+...++|++|+|++|.|++.....+... . .++.+. +.+|.+
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 889999999999998643 3455667899999999999987655444322 1 155555 555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=4.8e-12 Score=122.00 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=54.1
Q ss_pred eeccC-CCCCccchhhhcCCcCceeeccC-cccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEccccc
Q 035831 239 TFAHN-NFNGCIPRSIGNMQNLNEIILSD-NKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQ 316 (443)
Q Consensus 239 ~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 316 (443)
+.+++ +++ .+|. +..+++|++|+|++ |.|++..+..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 343 2444 55555555555553 55554444555555555555555555555555555555555555555555
Q ss_pred CCccCchhhcCCCCCCEEEecCCcCCC
Q 035831 317 LTGFVSEQICKLPSLSNFTFSYNYFQG 343 (443)
Q Consensus 317 l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 343 (443)
|+++.+..|..++ |+.|+|++|.|..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 5554444444443 5555555555543
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=2.8e-10 Score=111.59 Aligned_cols=258 Identities=15% Similarity=0.111 Sum_probs=174.4
Q ss_pred eecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCc--------
Q 035831 104 VFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNR-------- 174 (443)
Q Consensus 104 v~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~-------- 174 (443)
|+-....+|.++.+|++++|.. .++.+-..+|.++.+|+.+++.++ ++.+.. +|.++.+|+.+.+..+-
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 4455666788899999999974 477677788999999999999765 666666 78888888777664331
Q ss_pred -------------CcccCCcccCCCCCCcEEecccccCCCCCCCccc-CC-CCCEEEccCCcccccCCccc---------
Q 035831 175 -------------LVGSFPRVVLSWPSLKFLDLRYNNFEGELPCDLF-DM-KLDALFLNNNRFSYSIPEKL--------- 230 (443)
Q Consensus 175 -------------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~-~L~~L~L~~n~l~~~~~~~~--------- 230 (443)
+......+|.++.+|+.+.+.++. . .+....+ .. +|+.+.+..+ +.......+
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 111223467778889988887653 3 3333333 32 6777776654 221111111
Q ss_pred --------------cCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcC
Q 035831 231 --------------GRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGN 296 (443)
Q Consensus 231 --------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 296 (443)
....++.+.+... +.......+..+..|+.+.+..+... .....|..+..++.+....+.+.
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred ecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 1233444444322 22223345666777777777766544 45566777777887777665543
Q ss_pred CchhccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccccc
Q 035831 297 VPQSFSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWA 374 (443)
Q Consensus 297 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~ 374 (443)
...|..+.+|+.+.+.++ +..+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..| ++.+....|.
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 345778889999999765 66677788999999999999754 88888899999999999999877 7777776664
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=2.5e-10 Score=111.92 Aligned_cols=111 Identities=8% Similarity=0.127 Sum_probs=79.9
Q ss_pred chhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCCccCchhhcCCC
Q 035831 250 PRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLTGFVSEQICKLP 329 (443)
Q Consensus 250 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 329 (443)
..+|.++..|+.+.+.++..+ ....+|.++.+|+.+.+. +.++......|.++.+|+.+++..+ ++.+...+|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345677777888877665443 455667777888888886 3455455667888888888888654 6656667888888
Q ss_pred CCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCC
Q 035831 330 SLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNC 364 (443)
Q Consensus 330 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~ 364 (443)
+|+.+.+..+ ++.+...+|.++.+|+.+++.+|.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8888888544 777777788888888888887764
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=2.1e-09 Score=105.39 Aligned_cols=262 Identities=10% Similarity=0.067 Sum_probs=174.7
Q ss_pred eecCCCCCCCCCC-cEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCc---CCccCC-CccCCCCCCEEEccCCcCccc
Q 035831 104 VFCAPALDDPNIT-VVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNR---FCGIIP-DFSDWKLMFEFDVSNNRLVGS 178 (443)
Q Consensus 104 v~c~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~-~~~~l~~L~~L~Ls~n~l~~~ 178 (443)
|+-.....|.+.. .|+++.+..+ ++.+-..+|.++.+|+.+.+..|. ++.+.. +|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4445555666663 5888888654 666777888899999999888764 666666 7888888888877654 4445
Q ss_pred CCcccCCCCCCcEEecccccCCCCCCCc-ccCC-CCCEEEccCCcccccCCccccCCccceeeeccCCCCCccchhhhcC
Q 035831 179 FPRVVLSWPSLKFLDLRYNNFEGELPCD-LFDM-KLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCIPRSIGNM 256 (443)
Q Consensus 179 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 256 (443)
....|..+.+|+.+.+..+. . .+... +... .|+.+.+..+ +.......+....|+.+.+..+-.. .....|.++
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhc
Confidence 56677788888888886442 3 23333 3332 6777777654 3223333444455666665443221 223334444
Q ss_pred CcCceeeccCc------------------------------------ccCccCccccCCCCCccEEEeeCCcCCcCCchh
Q 035831 257 QNLNEIILSDN------------------------------------KLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQS 300 (443)
Q Consensus 257 ~~L~~L~Ls~n------------------------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 300 (443)
.+++......+ .++..-..+|.++..|+.+.+.++... .....
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcc
Confidence 44444332211 122123346778889999999876554 56677
Q ss_pred ccCCCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccccc
Q 035831 301 FSSLESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWAN 375 (443)
Q Consensus 301 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~ 375 (443)
|.++..|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+....|.+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 8889999999996 5677677789999999999999865 78888899999999999999654 78887776643
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=1.8e-08 Score=97.98 Aligned_cols=260 Identities=9% Similarity=0.049 Sum_probs=151.1
Q ss_pred cceecCCCCCCCCCCcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCC
Q 035831 102 NGVFCAPALDDPNITVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFP 180 (443)
Q Consensus 102 ~gv~c~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 180 (443)
.||+-.+...|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +..+.. +|... +|+.+.+..+- +....
T Consensus 55 ~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~ 129 (379)
T 4h09_A 55 SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGN 129 (379)
T ss_dssp TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECT
T ss_pred CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccc
Confidence 3566666667777778888888643 665666677776 5777766543 555555 56554 67777776542 21223
Q ss_pred cccCCCCCCcEEecccccCCCCCCCcccCC-CCCEEEccCCcccc-----------------------------------
Q 035831 181 RVVLSWPSLKFLDLRYNNFEGELPCDLFDM-KLDALFLNNNRFSY----------------------------------- 224 (443)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~----------------------------------- 224 (443)
..|.+. +|+.+.+..+ ++......+... .++.+.+..+....
T Consensus 130 ~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (379)
T 4h09_A 130 YIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT 207 (379)
T ss_dssp TTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE
T ss_pred cccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE
Confidence 333332 3444443322 120111112111 44444433322110
Q ss_pred cCCcc-ccCCccceeeeccCCCCCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccC
Q 035831 225 SIPEK-LGRSTVSVVTFAHNNFNGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSS 303 (443)
Q Consensus 225 ~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (443)
..... .....++.+.+..+ +.......|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++......|.+
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 00001 11133455554433 33234456667777888877665 44344566777788888887654 44345566778
Q ss_pred CCCCceEEcccccCCccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCccccc
Q 035831 304 LESIQTLILSHNQLTGFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKW 373 (443)
Q Consensus 304 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~ 373 (443)
+.+|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+....|
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 888888888888887777778888888888888654 77777778888888888877554 555555544
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=4.7e-10 Score=108.25 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCCccEEEeeCCcCCcCCchhc---cCCCCCceEEcccccCCccCc----hhhcCCCCCCEEEecCCcCCCCCCCCCCC
Q 035831 279 SLKNLRVFDVSSNLFHGNVPQSF---SSLESIQTLILSHNQLTGFVS----EQICKLPSLSNFTFSYNYFQGLGNECIPG 351 (443)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 351 (443)
.+++|++|+|++|.+.+.....+ ..+++|++|+|+.|.|.+... ..+..+++|+.|++++|.|+......+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46788888888888764333333 246788888888888876432 23345678888888888877654333322
Q ss_pred -CCcCceeeCCCCC
Q 035831 352 -SKVNSAFDDASNC 364 (443)
Q Consensus 352 -~~~L~~L~l~~N~ 364 (443)
+ ...++++.|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 3457777766
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.88 E-value=1.4e-07 Score=91.66 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=168.1
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEec
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDL 194 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 194 (443)
.+|+++.+.. .++.+-..+|.++.+|+.++|..+ ++.+.. +|.++ +|+.+.+..+ ++.+...+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 5677888864 577677788999999999999754 777777 88887 6888887654 55455555655 47999999
Q ss_pred ccccCCCCCCCcccCCCCCEEEccCCcccccCCccc-cCCccceeeeccCCC----------------------------
Q 035831 195 RYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKL-GRSTVSVVTFAHNNF---------------------------- 245 (443)
Q Consensus 195 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l---------------------------- 245 (443)
..+-.. .....+...+++.+.+..+--. .....+ ....++.+.+..+..
T Consensus 121 p~~~~~-i~~~~F~~~~l~~~~~~~~v~~-i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 121 PGATTE-IGNYIFYNSSVKRIVIPKSVTT-IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp CTTCCE-ECTTTTTTCCCCEEEECTTCCE-ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred CCcccc-ccccccccceeeeeeccceeec-cccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 765322 3333344457777766544221 111112 223333333332211
Q ss_pred -------CCccchhhhcCCcCceeeccCcccCccCccccCCCCCccEEEeeCCcCCcCCchhccCCCCCceEEcccccCC
Q 035831 246 -------NGCIPRSIGNMQNLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQLT 318 (443)
Q Consensus 246 -------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 318 (443)
.......+..+.+|+.+.+..+ +......++.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 1112234455566777776554 33244566778889999999876 55456677888899999999654 66
Q ss_pred ccCchhhcCCCCCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCCCcccccc
Q 035831 319 GFVSEQICKLPSLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAERPSQKWA 374 (443)
Q Consensus 319 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~p~~~~~ 374 (443)
.+...+|.++.+|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.+....|.
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 566778999999999999999999999999999999999999755 7777766654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.2e-09 Score=103.57 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=55.7
Q ss_pred CccceeeeccCCCCCccchhhh---cCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcCCchhccC-C
Q 035831 233 STVSVVTFAHNNFNGCIPRSIG---NMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGNVPQSFSS-L 304 (443)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l 304 (443)
++|++|++.+|.+.+.....+. .+++|++|+|+.|.+++. +...+..+++|+.|+|++|.|++.....+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 5677777777777644433333 467899999999988753 2333445688999999999887554444443 2
Q ss_pred CCCceEEccccc
Q 035831 305 ESIQTLILSHNQ 316 (443)
Q Consensus 305 ~~L~~L~Ls~N~ 316 (443)
...+++++++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3568888887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=2.1e-09 Score=93.68 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=55.8
Q ss_pred hhhcCCcCceeeccCc-ccCcc----CccccCCCCCccEEEeeCCcCCcC----CchhccCCCCCceEEcccccCCcc--
Q 035831 252 SIGNMQNLNEIILSDN-KLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQSFSSLESIQTLILSHNQLTGF-- 320 (443)
Q Consensus 252 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-- 320 (443)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|.+. +...+...++|++|+|++|.|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444455555555555 55421 223344445555555555555431 222333445556666666655532
Q ss_pred --CchhhcCCCCCCEEEe--cCCcCCCCCC----CCCCCCCcCceeeCCCCCC
Q 035831 321 --VSEQICKLPSLSNFTF--SYNYFQGLGN----ECIPGSKVNSAFDDASNCL 365 (443)
Q Consensus 321 --~~~~l~~l~~L~~L~L--s~N~l~~~~~----~~~~~~~~L~~L~l~~N~l 365 (443)
+...+...++|++|+| ++|.|..... ..+...+.|+.|++++|.|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444555666666 5555554322 2223335566666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=7.5e-09 Score=90.15 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=74.0
Q ss_pred CccceeeeccC-CCCCc----cchhhhcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcC----Cch
Q 035831 233 STVSVVTFAHN-NFNGC----IPRSIGNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQ 299 (443)
Q Consensus 233 ~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 299 (443)
..|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|.+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 34555666655 55432 334455667788888888887632 234445557788888888888753 345
Q ss_pred hccCCCCCceEEc--ccccCCcc----CchhhcCCCCCCEEEecCCcCCC
Q 035831 300 SFSSLESIQTLIL--SHNQLTGF----VSEQICKLPSLSNFTFSYNYFQG 343 (443)
Q Consensus 300 ~l~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~ 343 (443)
.+...++|++|+| ++|.|... +...+...++|++|++++|.+..
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5666778888888 77888754 33455666888888888888753
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=7e-08 Score=88.55 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCcCCccCC--CccCCCCCCEEEccCCcCcccCC-------ccc
Q 035831 115 ITVVAGIDLNGNDIAG--SFPAELGLLTDLALFHVNSNRFCGIIP--DFSDWKLMFEFDVSNNRLVGSFP-------RVV 183 (443)
Q Consensus 115 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-------~~l 183 (443)
+++|++|+|++|.|++ .++..+..+++|+.|+|++|+|.+... .+..+ +|++|+|++|.+.+.++ ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 3678999999999997 445677889999999999999998743 44444 89999999999986555 236
Q ss_pred CCCCCCcEEe
Q 035831 184 LSWPSLKFLD 193 (443)
Q Consensus 184 ~~l~~L~~L~ 193 (443)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788888887
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=6.5e-08 Score=88.72 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=42.6
Q ss_pred hcCCcCceeeccCcccCc--cCccccCCCCCccEEEeeCCcCCcCCchhccCCC--CCceEEcccccCCccCc-------
Q 035831 254 GNMQNLNEIILSDNKLSG--CFPSEIGSLKNLRVFDVSSNLFHGNVPQSFSSLE--SIQTLILSHNQLTGFVS------- 322 (443)
Q Consensus 254 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~~------- 322 (443)
.++++|++|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666664 2234444566666666666666543 2222222 56666666666654332
Q ss_pred hhhcCCCCCCEEE
Q 035831 323 EQICKLPSLSNFT 335 (443)
Q Consensus 323 ~~l~~l~~L~~L~ 335 (443)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2344555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=7.2e-07 Score=76.09 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCc-CCccCC-CccCC----CCCCEEEccCCc-CcccCCcccCCCCC
Q 035831 116 TVVAGIDLNGNDIAGSFPAELGLLTDLALFHVNSNR-FCGIIP-DFSDW----KLMFEFDVSNNR-LVGSFPRVVLSWPS 188 (443)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 188 (443)
-.|++||++++.|+..--..+.++++|++|+|++|. |++..- .++.+ ++|++|+|++|. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999987766778899999999999995 665433 45554 479999999975 77655566778899
Q ss_pred CcEEeccccc
Q 035831 189 LKFLDLRYNN 198 (443)
Q Consensus 189 L~~L~L~~n~ 198 (443)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.8e-06 Score=73.66 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=39.6
Q ss_pred cCceeeccCcccCccCccccCCCCCccEEEeeCCc-CCcCCchhccCC----CCCceEEccccc-CCccCchhhcCCCCC
Q 035831 258 NLNEIILSDNKLSGCFPSEIGSLKNLRVFDVSSNL-FHGNVPQSFSSL----ESIQTLILSHNQ-LTGFVSEQICKLPSL 331 (443)
Q Consensus 258 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L 331 (443)
.|++||++++.|+..--..+..+++|++|+|++|. |++.--..+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555444333444455555555555553 443322333332 245555555553 554333444555555
Q ss_pred CEEEecCC
Q 035831 332 SNFTFSYN 339 (443)
Q Consensus 332 ~~L~Ls~N 339 (443)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=4.1e-06 Score=72.79 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=25.2
Q ss_pred cCCCCCccEEEeeCCcCCc----CCchhccCCCCCceEEcccccCCcc----CchhhcCCCCCCEEEecC
Q 035831 277 IGSLKNLRVFDVSSNLFHG----NVPQSFSSLESIQTLILSHNQLTGF----VSEQICKLPSLSNFTFSY 338 (443)
Q Consensus 277 l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~ 338 (443)
+..-+.|+.|+|++|+|.+ .+.+.+...+.|+.|+|++|.|.+. +.+++.....|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3333444444444444432 1122233334444444444444432 122333344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=2.9e-06 Score=73.67 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=83.5
Q ss_pred CccceeeeccC-CCCCc----cchhhhcCCcCceeeccCcccCcc----CccccCCCCCccEEEeeCCcCCcC----Cch
Q 035831 233 STVSVVTFAHN-NFNGC----IPRSIGNMQNLNEIILSDNKLSGC----FPSEIGSLKNLRVFDVSSNLFHGN----VPQ 299 (443)
Q Consensus 233 ~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 299 (443)
..|++|+|++| ++... +.+.+..-+.|+.|+|++|.|.+. +.+.+..-+.|++|+|++|.|.+. +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67999999986 77643 445667778999999999999843 344555668999999999999853 345
Q ss_pred hccCCCCCceEEcccc---cCCc----cCchhhcCCCCCCEEEecCCcCC
Q 035831 300 SFSSLESIQTLILSHN---QLTG----FVSEQICKLPSLSNFTFSYNYFQ 342 (443)
Q Consensus 300 ~l~~l~~L~~L~Ls~N---~l~~----~~~~~l~~l~~L~~L~Ls~N~l~ 342 (443)
.+.....|++|+|++| .+.. .+.+.+...++|+.|+++.|.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 5667788999999876 4443 24456777889999999887653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00031 Score=56.77 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=21.2
Q ss_pred CCCEEEecCCcCCCCCCCCCCCCCcCceeeCCCCCCCC
Q 035831 330 SLSNFTFSYNYFQGLGNECIPGSKVNSAFDDASNCLAE 367 (443)
Q Consensus 330 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 367 (443)
+|++|+|++|+|+.+.+..|..++.|+.|+|.+|.+..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 45555555555555555555555555556555554443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0015 Score=52.74 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=17.2
Q ss_pred CccEEEeeCCcCCcCCchhccCCCCCceEEcccccC
Q 035831 282 NLRVFDVSSNLFHGNVPQSFSSLESIQTLILSHNQL 317 (443)
Q Consensus 282 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 317 (443)
+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555533334444444455555554444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.39 E-value=11 Score=27.99 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=21.2
Q ss_pred CcccCchhhcCCCCCCEEEccCCcCCccCC-CccCCCCCCEEEccC
Q 035831 128 IAGSFPAELGLLTDLALFHVNSNRFCGIIP-DFSDWKLMFEFDVSN 172 (443)
Q Consensus 128 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~Ls~ 172 (443)
++.+-..+|.++..|+.+.|-.+ ++.+.. +|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334444555555555555443 333333 555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.60 E-value=10 Score=28.22 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=37.8
Q ss_pred CCcCCccCC-CccCCCCCCEEEccCCcCcccCCcccCCCCCCcEEecccc
Q 035831 149 SNRFCGIIP-DFSDWKLMFEFDVSNNRLVGSFPRVVLSWPSLKFLDLRYN 197 (443)
Q Consensus 149 ~n~i~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 197 (443)
+..++.+.. +|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445667776 8999999999998765 55567778999999999988764
No 167
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=28.55 E-value=43 Score=28.30 Aligned_cols=7 Identities=14% Similarity=-0.016 Sum_probs=3.2
Q ss_pred eCCCCCC
Q 035831 359 DDASNCL 365 (443)
Q Consensus 359 ~l~~N~l 365 (443)
|=.+|.|
T Consensus 154 DW~gn~i 160 (227)
T 3ghp_A 154 NWYGNRI 160 (227)
T ss_dssp ETTSCBC
T ss_pred eccCcEe
Confidence 3344544
Done!