BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035832
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ V + +R + L VS + E L+ G +GSGK+TLLQ++AGL +PTSG
Sbjct: 4 EVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63
Query: 76 INIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFG----WPRQSGSIQ 131
+ G G +GI FQ+PE F A+ V DEV F +P +
Sbjct: 64 VLYDGERKKGYEIRR-------NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 116
Query: 132 LKEYLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+K +A+ +VGLD S D+ P LSGG KRR+A+A +V PD+LILDEPL G
Sbjct: 117 VK--------KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 191 LDWKARADVVXXXXX-XXXXXTILVVSHDLKEMAALVDHSWRMDMG 235
LD + + D++ T++++SHD++ + VD ++ G
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ V + +R + L VS + E L+ G +GSGK+TLLQ++AGL +PTSG
Sbjct: 6 EVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 65
Query: 76 INIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFG----WPRQSGSIQ 131
+ G G +GI FQ+PE F A+ V DEV F +P +
Sbjct: 66 VLYDGERKKGYEIRR-------NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 132 LKEYLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+K +A+ +VGLD S D+ P LSGG KRR+A+A +V PD+LILDEPL G
Sbjct: 119 VK--------KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 170
Query: 191 LDWKARADVVXXXXX-XXXXXTILVVSHDLKEMAALVDHSWRMDMG 235
LD + + D++ T++++SHD++ + VD ++ G
Sbjct: 171 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 216
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXX 92
+IL G+S S+ + F I G SGSGK+TLL +L L PT G + + G D
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 93 XXXXXKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
K+G VFQF PE + + ++ + G P++ + EYL ++ +G
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-ERGEYL-------LSELG 129
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXX 208
L G L + P+ LSGG ++R+A+A L P LL DEP LD V+
Sbjct: 130 L-GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 209 XXT-ILVVSHDLKEMAALVDHSWRMDMG 235
T I++V+H+ +E+A L + M G
Sbjct: 189 GGTSIVMVTHE-RELAELTHRTLEMKDG 215
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
+ GVSF + E + G SGSGKTT+L+L+AGL +PT G + I G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI------GGKRVTDLPP 84
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
VG+VFQ F V D V FG + K+ + ++ + ++ L+ +
Sbjct: 85 QKRNVGLVFQ-NYALFQHMTVYDNVSFGLREKRVP---KDEMDARVRELLRFMRLESYA- 139
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXXXXXTI 212
++ PH LSGG ++R+ALA L P +L+ DEP A +D + R ++ T
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 213 LVVSHDLKEMAALVD 227
+ V+HD +E + D
Sbjct: 200 VFVTHDQEEALEVAD 214
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 21/238 (8%)
Query: 11 ISCDYSCLEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69
+S + L+V +++Y GT L G++ ++ I G +G GK+TL Q G+
Sbjct: 1 MSLEDYILKVEELNYNYSDGTHA--LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 70 KPTSGSINIRG----YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPR 125
KP+SG I Y+ G +GIVFQ P+ + +V +V FG
Sbjct: 59 KPSSGRILFDNKPIDYSRKGIMKLRES------IGIVFQDPDNQLFSASVYQDVSFG--- 109
Query: 126 QSGSIQLKE-YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
+ +++L E + + A+ G++ DK H LS G K+R+A+A LV P +LIL
Sbjct: 110 -AVNMKLPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 185 DEPLAGLDWKARADVVXXXXXXXXX--XTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
DEP AGLD ++++ TI++ +HD+ + D+ + M G +++
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
+V ++GVSF + + F + G SG GKTT L +LAG+ KPTSG I Y +D
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI----YFDD--VLVN 68
Query: 91 XXXXXXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146
+VG+VFQ +P V + + F + S E + + R +
Sbjct: 69 DIPPKYREVGMVFQNYALYPHM-----TVFENIAFPLRARRISKDEVEKRVVEIARKL-- 121
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
L LD+ P LSGG ++R+ALA LV+ P +L+ DEPL+ LD R
Sbjct: 122 --LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
LN ++ + + F + G SGSGK+TLL +AG+ KPTSG I Y ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI----YFDE--KDVTELPP 72
Query: 95 XXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA-LNLQRAINWVGL 149
VG+VFQ +P + + PR+ +++E L++ + +N
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN---- 128
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX 209
+ P LSGG ++R+A+A LV+ P++L+LDEPL+ LD R +V
Sbjct: 129 ------RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182
Query: 210 --XTILVVSHDLKEMAALVD 227
T + V+HD E A+ D
Sbjct: 183 LGITTVYVTHDQAEALAMAD 202
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+++L G++ + E ++ G SGSGK+T L+ L L G I I G N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINW 146
+VG+VFQ FP + + L + + WPR+ + E L +
Sbjct: 76 KVRE--EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL--------DK 125
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXX 206
VGL + P SLSGG +R+A+A L P +++ DEP + LD + +V+
Sbjct: 126 VGLKDKA-HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 207 XXX-XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
T++VV+H++ + D MD GG+++E+ P
Sbjct: 185 ANEGMTMVVVTHEMGFAREVGDRVLFMD-GGYIIEEGKP 222
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+++L G++ + E ++ G SGSGK+T L+ L L G I I G N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINW 146
+VG+VFQ FP + + L + + WPR+ + E L +
Sbjct: 97 KVRE--EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL--------DK 146
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXX 206
VGL + P SLSGG +R+A+A L P +++ DEP + LD + +V+
Sbjct: 147 VGLKDKA-HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 207 XXX-XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
T++VV+H++ + D MD GG+++E+ P
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMD-GGYIIEEGKP 243
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
+N ++ ++ + F ++ G SG GKTT L+++AGL +PT G I G
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF------GDRDVTYLPP 81
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGWPRQS------GSIQLKEYLALNLQRAINWVG 148
+ +VFQ Y V WP + +++K++ + + + W
Sbjct: 82 KDRNISMVFQ---SYAV-----------WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 149 ---LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
L++ P LSGG ++R+A+A +V PD+L++DEPL+ LD K R +
Sbjct: 128 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 187
Query: 206 --XXXXXTILVVSHDLKEMAALVDHSWRMDMGGFL 238
T + V+HD E + D M+ G L
Sbjct: 188 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 222
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
+N ++ ++ + F ++ G SG GKTT L+++AGL +PT G I G
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF------GDRDVTYLPP 80
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGWPRQS------GSIQLKEYLALNLQRAINWVG 148
+ +VFQ Y V WP + +++K++ + + + W
Sbjct: 81 KDRNISMVFQ---SYAV-----------WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 149 ---LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
L++ P LSGG ++R+A+A +V PD+L++DEPL+ LD K R +
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 186
Query: 206 --XXXXXTILVVSHDLKEMAALVDHSWRMDMGGFL 238
T + V+HD E + D M+ G L
Sbjct: 187 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L V+ ++ E F I G SGSGK+T+L ++ L KPT G + I +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 95 XXXKVGIVFQ---FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
K+G VFQ +NV +IF + R + S + + AL + L+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKY-RGAMSGEERRKRAL---ECLKMAELEE 136
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX-- 209
+ P+ LSGG ++R+A+A L P +++ D+P LD K ++
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 210 XTILVVSHDL 219
T++VV+HD+
Sbjct: 197 KTVVVVTHDI 206
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 20 VRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
V++VS +V L+ V+ ++ + FG I G SG+GKTT ++++AGL P++G +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFG-ILGPSGAGKTTFMRIIAGLDVPSTGEL-- 62
Query: 79 RGYNND---GXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
Y +D K+G+VFQ + + N+ +P + + KE
Sbjct: 63 --YFDDRLVASNGKLIVPPEDRKIGMVFQ---TWALYPNLTAFENIAFPLTNMKMS-KEE 116
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ ++ + + L+ P LSGG ++R+ALA LV+ P LL+LDEP + LD +
Sbjct: 117 IRKRVEEVAKILDIHHV-LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 196 R--ADVVXXXXXXXXXXTILVVSHDLKEMAALVDH 228
R A + T+LVVSHD ++ A+ D
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ VS+R G V L V+ ++ G++GSGKTTLL++LAGL +G I
Sbjct: 12 IELNSVSFRYNGDYV--LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF 68
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL----K 133
+ G D VG VFQ P + V ++V F S+++ +
Sbjct: 69 LDGSPAD-------PFLLRKNVGYVFQNPSSQIIGATVEEDVAF-------SLEIMGLDE 114
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+ +++ + VGL G + DP +LSGG K+RLA+A L + L LDEP++ LD
Sbjct: 115 SEMRKRIKKVLELVGLSGLAA-ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 194 KARADVVXXXXXXXXXXT-ILVVSHDLK 220
++ ++ I++V+H+L+
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELE 201
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
+V + ++ + E F + G SG GK+TLL+++AGL TSG + I G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI------GEKRMN 68
Query: 91 XXXXXXXKVGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
VG+VFQ Y VA+N+ FG KE + + + +
Sbjct: 69 DTPPAERGVGMVFQSYALYPHLSVAENM----SFGLKLAGAK---KEVINQRVNQVAEVL 121
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD--VVXXXXX 205
L LD+ P +LSGG ++R+A+ LV P + +LDEPL+ LD R +
Sbjct: 122 QL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 206 XXXXXTILVVSHDLKEMAALVDHSWRMDMG 235
T++ V+HD E L D +D G
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
+V + ++ + E F + G SG GK+TLL+++AGL TSG + I G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI------GEKRMN 68
Query: 91 XXXXXXXKVGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
VG+VFQ Y VA+N+ FG KE + + + +
Sbjct: 69 DTPPAERGVGMVFQSYALYPHLSVAENM----SFGLKLAGAK---KEVINQRVNQVAEVL 121
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD--VVXXXXX 205
L LD+ P +LSGG ++R+A+ LV P + +LDEPL+ LD R +
Sbjct: 122 QL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 206 XXXXXTILVVSHDLKEMAALVDHSWRMDMG 235
T++ V+HD E L D +D G
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L V+ ++ E F I G SGSGK+T+L ++ L KPT G + I +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 95 XXXKVGIVFQ---FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
K+G VFQ +NV +IF + R + S + + AL + L+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKY-RGAMSGEERRKRAL---ECLKMAELEE 136
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX-- 209
+ P+ LSGG ++R+A+A L P +++ D+P LD K ++
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 210 XTILVVSHDL 219
T++VV+HD+
Sbjct: 197 KTVVVVTHDI 206
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L V+ ++ E F I G SGSGK+T L ++ L KPT G + I +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 95 XXXKVGIVFQ---FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
K+G VFQ +NV +IF + R + S + + AL + L+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKY-RGAXSGEERRKRAL---ECLKXAELEE 136
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXXXX 209
+ P+ LSGG ++R+A+A L P +++ DEP LD K + +
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 210 XTILVVSHDL 219
T++VV+HD+
Sbjct: 197 KTVVVVTHDI 206
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 20 VRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
V++VS +V L+ V+ ++ + FG I G SG+GKTT ++++AGL P++G +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFG-ILGPSGAGKTTFMRIIAGLDVPSTGEL-- 62
Query: 79 RGYNND---GXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
Y +D K+G+VFQ + + N+ +P + + KE
Sbjct: 63 --YFDDRLVASNGKLIVPPEDRKIGMVFQ---TWALYPNLTAFENIAFPLTNMKMS-KEE 116
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ ++ + + L+ P LSG ++R+ALA LV+ P LL+LDEP + LD +
Sbjct: 117 IRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 196 R--ADVVXXXXXXXXXXTILVVSHDLKEMAALVDH 228
R A + T+LVVSHD ++ A+ D
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
+V + ++ + E F + G SG GK+TLL+++AGL TSG + I G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI------GEKRMN 68
Query: 91 XXXXXXXKVGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
VG+VFQ Y VA+N+ FG KE + + + +
Sbjct: 69 DTPPAERGVGMVFQSYALYPHLSVAENM----SFGLKLAGAK---KEVINQRVNQVAEVL 121
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD--VVXXXXX 205
L LD+ P +LSGG ++R+A+ LV P + +LD+PL+ LD R +
Sbjct: 122 QL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH 180
Query: 206 XXXXXTILVVSHDLKEMAALVDHSWRMDMG 235
T++ V+HD E L D +D G
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 17/212 (8%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
+V + +S + + F ++ G SG GKTT L+++AGL +P+ G I I
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 91 XXXXXXXKVGIVFQFPERYFVADNVLDEVIFGW-----PRQSGSIQLKEYLALNLQRAIN 145
+ +VFQ Y V D + F PRQ +++E L
Sbjct: 75 FVPPKDRDIAMVFQSYALY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL------- 126
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
+GL L++ P LSGG ++R+AL +V+ P + ++DEPL+ LD K R +
Sbjct: 127 -LGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 206 XXXX--XTILVVSHDLKEMAALVDHSWRMDMG 235
T + V+HD E + D M+ G
Sbjct: 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 14/210 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++V+DV++ G + L+ VSFS+P+ + GRSGSGK+T+ L SGSI
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G++ +V Q + D + + + + + Q+++ A
Sbjct: 402 LDGHD----VRDYKLTNLRRHFALVSQ--NVHLFNDTIANNIAYAAEGEYTREQIEQ--A 453
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
A+ ++ GLD T + ++ SLSGG ++R+A+A L++ +LILDE + LD
Sbjct: 454 ARQAHAMEFIENMPQGLD-TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 193 WKARADVVXXXXXXXXXXTILVVSHDLKEM 222
++ + T+LV++H L +
Sbjct: 513 TESERAIQAALDELQKNKTVLVIAHRLSTI 542
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 17 CLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
LE ++V + P +V I S S+P S + G SGSGK+T+L LL L P SG+
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 76 INIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I++ G++ K+G V Q P + ++ + + +G S +
Sbjct: 432 ISLDGHD----IRQLNPVWLRSKIGTVSQEP--ILFSCSIAENIAYGADDPSSVTAEEIQ 485
Query: 136 LALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ A+ ++ G + T + + LSGG K+R+A+A L++ P +L+LDE +
Sbjct: 486 RVAEVANAVAFIRNFPQGFN-TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 544
Query: 191 LDWKARADVVXXXXXXXXXXTILVVSHDLK-----EMAALVDHSWRMDMG 235
LD + V T+LV++H L M A++D + G
Sbjct: 545 LDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYG 594
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQ 104
+ + ++ G +G+GK+ L+L+AG+ KP G + + G + + GI F
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD--------ITPLPPERRGIGF- 74
Query: 105 FPERY--FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162
P+ Y F +V + +G + + + + I + LD+ P LS
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL------LDRKPARLS 128
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX--XTILVVSHDLK 220
GG ++R+ALA LV P LL+LDEPL+ +D K + ++ IL V+HDL
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 221 EMAALVDHSWRMDMGGFLVEQ 241
E A L D M + G +VE+
Sbjct: 189 EAAMLADEVAVM-LNGRIVEK 208
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
LE ++V + P +V I S S+P S + G SGSGK+T+L LL L P SG+
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400
Query: 76 INIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I++ G++ K+G V Q P + ++ + + +G S +
Sbjct: 401 ISLDGHD----IRQLNPVWLRSKIGTVSQEP--ILFSCSIAENIAYGADDPSSVTAEEIQ 454
Query: 136 LALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ A+ ++ G + T + + LSGG K+R+A+A L++ P +L+LDE +
Sbjct: 455 RVAEVANAVAFIRNFPQGFN-TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513
Query: 191 LDWKARADVVXXXXXXXXXXTILVVSHDLK-----EMAALVDHSWRMDMG 235
LD + V T+LV++H L M A++D + G
Sbjct: 514 LDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L+ +S + + +I G +G+GKT L+L+AG P SG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD------VTDLSP 69
Query: 95 XXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWVGL 149
+ V+Q FP NV + FG + ++K+ L+ R + L
Sbjct: 70 EKHDIAFVYQNYSLFPHM-----NVKKNLEFGMRMK----KIKDPKRVLDTARDLKIEHL 120
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXX 207
LD++P +LSGG ++R+ALA LV P +L+LDEPL+ LD + + + +
Sbjct: 121 ----LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 208 XXXTILVVSHDLKEMAALVD 227
T+L ++HD E + D
Sbjct: 177 NKLTVLHITHDQTEARIMAD 196
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 47/215 (21%)
Query: 33 DILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+IL G+SF + E + FGLI G +G+GKTT L++++ L KP+SG + + G N
Sbjct: 29 EILKGISFEIEEGEIFGLI-GPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--------- 78
Query: 92 XXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS---IQLKEYLAL---------- 138
V + P + ++I P ++G+ +Q EYL
Sbjct: 79 ----------VVEEPHE-------VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121
Query: 139 ----NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD-W 193
++RA GL G + + S G R+L +A L+ P L ILDEP +GLD
Sbjct: 122 EIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 194 KARADVVXXXXXXXXXXTILVVSHDLKEMAALVDH 228
AR TILV SH++ E+ L D
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 215
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 14/210 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE R+V++ PG +V L ++ +P + GRSGSGK+T+ L+ G I
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G++ +V +V Q + D V + + + + Q++E A
Sbjct: 402 MDGHD----LREYTLASLRNQVALVSQ--NVHLFNDTVANNIAYARTEEYSREQIEE--A 453
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ A++++ GLD T + ++ LSGG ++R+A+A L++ +LILDE + LD
Sbjct: 454 ARMAYAMDFINKMDNGLD-TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 193 WKARADVVXXXXXXXXXXTILVVSHDLKEM 222
++ + T LV++H L +
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTI 542
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E R+V++ PG V L ++ +P + GRSGSGK+T+ L+ G I
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G++ +V +V Q + D V + + + Q Q++E A
Sbjct: 402 MDGHD----LREYTLASLRNQVALVSQ--NVHLFNDTVANNIAYARTEQYSREQIEE--A 453
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ A++++ GLD T + ++ LSGG ++R+A+A L++ +LILDE + LD
Sbjct: 454 ARMAYAMDFINKMDNGLD-TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 193 WKARADVVXXXXXXXXXXTILVVSHDLKEM 222
++ + T LV++H L +
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTI 542
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+ LN VS +P + G SG+GK+TL++ + L +PT GS+ + G
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESE 76
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
++G++FQ R + L + P+ ++ E L+L V
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL--------V 128
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXX 207
GL G D P +LSGG K+R+A+A L P +L+ DE + LD ++
Sbjct: 129 GL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 208 XX--XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
TIL+++H++ + + D + G L+EQ
Sbjct: 188 RRLGLTILLITHEMDVVKRICD-CVAVISNGELIEQ 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+ LN VS +P + G SG+GK+TL++ + L +PT GS+ + G
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESE 99
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
++G++FQ R + L + P+ ++ E L+L V
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL--------V 151
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXX 207
GL G D P +LSGG K+R+A+A L P +L+ D+ + LD ++
Sbjct: 152 GL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 208 XX--XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
TIL+++H++ + + D + G L+EQ
Sbjct: 211 RRLGLTILLITHEMDVVKRICD-CVAVISNGELIEQ 245
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 64
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 65 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 115
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 116 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++H L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAHRL 198
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 71 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 121
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++H L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRL 204
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 7 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 66
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 67 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 117
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++H L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRL 200
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
V + +S + + F ++ G SG GKTT L+ +AGL +PT G I I
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
V VFQ +P V DN+ +P + + K+ + ++ +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXT-VYDNI------AFPLKLRKVP-KQEIDKRVREVAEXL 130
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
GL L++ P LSGG ++R+AL +++ P + + DEPL+ LD K R
Sbjct: 131 GL-TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLR 178
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GR+GSGK+TL +L+ P +G + I G
Sbjct: 7 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDG 66
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 67 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 117
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++H L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRL 200
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN----NDGXXXX 89
+LN +S SL I G SG GKTTLL+ LAG +P SG I++ G N
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 90 XXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
+ G++F V + +G G A QR + L
Sbjct: 79 ERRLGYLVQEGVLFPH-------LTVYRNIAYGLGNGKGRT------AQERQRIEAMLEL 125
Query: 150 DGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXX 207
G S + PH LSGG ++R ALA L P+L++LDEP + LD + R +
Sbjct: 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 208 XX--XTILVVSHDLKEMAALVDHSWRMDMGGFL 238
+ + VSHD +E D M G L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 71 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 121
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI D+ + LD+++
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESE 181
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++H L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRL 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+ LN VS +P + G SG+GK+TL++ + L +PT GS+ + G
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESE 99
Query: 92 XXXXXXKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
++G +FQ R + L + P+ ++ E L+L V
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL--------V 151
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXX 207
GL G D P +LSGG K+R+A+A L P +L+ D+ + LD ++
Sbjct: 152 GL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 208 XX--XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
TIL+++H+ + + D + G L+EQ
Sbjct: 211 RRLGLTILLITHEXDVVKRICD-CVAVISNGELIEQ 245
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 17/200 (8%)
Query: 27 PPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85
P +++IL G+SFS+ P ++ L+ G SG GK+T++ LL G I I G
Sbjct: 1087 PERPEIEILKGLSFSVEPGQTLALV-GPSGCGKSTVVALLERFYDTLGGEIFIDG----S 1141
Query: 86 XXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGW-PRQSGSIQLKEYLALNLQRAI 144
++ IV Q P + + + + +I+G P Q++E A L
Sbjct: 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCS--IAENIIYGLDPSSVTMAQVEE--AARLANIH 1197
Query: 145 NWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199
N++ G + D+ LSGG K+R+A+A LV+ P +L+LDE + LD ++ V
Sbjct: 1198 NFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256
Query: 200 VXXXXXXXXXXTILVVSHDL 219
T +V++H L
Sbjct: 1257 QEALDRAREGRTCIVIAHRL 1276
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 18 LEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ V +V + P V IL G++ + + G SG GK+T++ LL G I
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIF----GWPRQSGSIQL 132
I G + V +V Q P + + ++E I G R+
Sbjct: 476 TIDGVD----VRDINLEFLRKNVAVVSQEPALF---NCTIEENISLGKEGITREEMVAAC 528
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHS-LSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
K N ++ I + +L D + LSGG K+R+A+A LV+ P +L+LDE + L
Sbjct: 529 K---MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585
Query: 192 DWKARADVVXXXXXXXXXXTILVVSHDLKEM 222
D ++ V T ++++H L +
Sbjct: 586 DAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 38/240 (15%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE +++ + P +V IL G++ + + G SG GK+T +QL+ L P G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+I G + +G+V Q P + A + + + +G +E +
Sbjct: 448 SIDGQD----IRTINVRYLREIIGVVSQEPVLF--ATTIAENIRYG----------REDV 491
Query: 137 ALN-LQRAINWVGLDGTSLD---KDPHS-----------LSGGYKRRLALAIQLVQVPDL 181
++ +++A+ + + D K PH LSGG K+R+A+A LV+ P +
Sbjct: 492 TMDEIEKAVK----EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547
Query: 182 LILDEPLAGLDWKARADVVXXXXXXXXXXTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
L+LDE + LD ++ A V T +V++H L + D D GG +VEQ
Sbjct: 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFD-GGVIVEQ 605
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 27/208 (12%)
Query: 27 PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGX 86
P + +L G+S + + + G SG GK+T++QLL P +GS+ + G
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE---- 1096
Query: 87 XXXXXXXXXXXKVGIVFQFPERY--FVADNV----------LDEVIFGWPRQSGSIQLKE 134
++GIV Q P + +A+N+ +E++ R + + +
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV----RAAKEANIHQ 1152
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
++ + VG GT L SGG K+R+A+A LV+ P +L+LDE + LD +
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQL-------SGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 195 ARADVVXXXXXXXXXXTILVVSHDLKEM 222
+ V T +V++H L +
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTI 1233
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 38/240 (15%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE +++ + P +V IL G++ + + G SG GK+T +QL+ L P G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+I G + +G+V Q P + A + + + +G +E +
Sbjct: 448 SIDGQD----IRTINVRYLREIIGVVSQEPVLF--ATTIAENIRYG----------REDV 491
Query: 137 ALN-LQRAINWVGLDGTSLD---KDPHS-----------LSGGYKRRLALAIQLVQVPDL 181
++ +++A+ + + D K PH LSGG K+R+A+A LV+ P +
Sbjct: 492 TMDEIEKAVK----EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547
Query: 182 LILDEPLAGLDWKARADVVXXXXXXXXXXTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
L+LDE + LD ++ A V T +V++H L + D D GG +VEQ
Sbjct: 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFD-GGVIVEQ 605
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 27/208 (12%)
Query: 27 PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGX 86
P + +L G+S + + + G SG GK+T++QLL P +GS+ + G
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE---- 1096
Query: 87 XXXXXXXXXXXKVGIVFQFPERY--FVADNV----------LDEVIFGWPRQSGSIQLKE 134
++GIV Q P + +A+N+ +E++ R + + +
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV----RAAKEANIHQ 1152
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
++ + VG GT L SGG K+R+A+A LV+ P +L+LDE + LD +
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQL-------SGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 195 ARADVVXXXXXXXXXXTILVVSHDLKEM 222
+ V T +V++H L +
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTI 1233
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 15/211 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ VS++ + IL ++ S+ + G SG GK+TL+ L+ TSG I
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
I G+N ++G+V Q + +D V + ++ G P + ++ A
Sbjct: 400 IDGHN----IKDFLTGSLRNQIGLVQQ--DNILFSDTVKENILLGRPTATDEEVVE---A 450
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ A +++ G D T + + LSGG K+RL++A + P +LILDE + LD
Sbjct: 451 AKMANAHDFIMNLPQGYD-TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 193 WKARADVVXXXXXXXXXXTILVVSHDLKEMA 223
++ + + T L+V+H L +
Sbjct: 510 LESESIIQEALDVLSKDRTTLIVAHRLSTIT 540
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
IL +S+ + + +++G +G+GKTTLL +L TSG++N+ G
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG--KXPGKVGYSAE 93
Query: 94 XXXXKVGIV-FQFPERYFVADNVLDEVIFGWPRQSGSIQ-LKEYLALNLQRAINWVGLDG 151
+G V E++ + V+D VI G + G Q + + + + + VG
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSA 153
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
+ + LS G K+R+ +A L P +LILDEP AGLD+ AR
Sbjct: 154 KAQQYIGY-LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIAR 197
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 8/188 (4%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
IL +SF S G SG GK+T+ LL +PT+G I I G D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAI--NWVGLDG 151
++G V Q + +A + + + +G L + L L R+ N
Sbjct: 77 ----QIGFVSQ--DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXXT 211
T + + +SGG ++RLA+A ++ P +L+LDE A LD ++ + V T
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT 190
Query: 212 ILVVSHDL 219
LV++H L
Sbjct: 191 TLVIAHRL 198
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 64
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 65 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 115
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 116 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++ L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAARL 198
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 13/203 (6%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I G
Sbjct: 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 81 YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNL 140
++ +VG+V Q + + +++D + P S K A L
Sbjct: 71 HD----LALADPNWLRRQVGVVLQ--DNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 121
Query: 141 QRAINWVG--LDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
A +++ +G T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 197 ADVVXXXXXXXXXXTILVVSHDL 219
++ T+++++ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAARL 204
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V D+ R G +V L GVS I G SGSGK+T L+ + L KP+ G+I
Sbjct: 7 LHVIDLHKRYGGHEV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 78 IRGYN------NDGXXXXXXXXXXX---XKVGIVFQFPE---RYFVADNVLDEVI--FGW 123
+ G N DG ++ +VFQ V +NV++ I G
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
+ + +YLA VG+D + K P LSGG ++R+++A L PD+L+
Sbjct: 125 SKHDARERALKYLA--------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176
Query: 184 LDEPLAGLDWKARADVVXXXXXXXXX-XTILVVSHDL 219
DEP + LD + +V+ T++VV+H++
Sbjct: 177 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 29/216 (13%)
Query: 18 LEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ +DVS+ P V +L G++F+L + G +GSGK+T+ LL L +PT G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 77 NIRG-----YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
+ G Y++ +V V Q P + + + +G R +
Sbjct: 77 LLDGEPLVQYDHH---------YLHTQVAAVGQEP--LLFGRSFRENIAYGLTR---TPT 122
Query: 132 LKEYLALNLQR-AINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
++E A+ ++ A +++ G D T + + + LSGG ++ +ALA L++ P LLILD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 186 EPLAGLDW--KARADVVXXXXXXXXXXTILVVSHDL 219
+ + LD + R + T+L+++H L
Sbjct: 182 QATSALDAGNQLRVQRLLYESPEWASRTVLLITHQL 217
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT----SGSINIRGYNNDGXXXXXX 91
+G+S + E S I G S SGK+T+++ + P SG + +G +
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 92 XXXXXXKVGIVFQFPERYF-----VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146
++ +V Q ++ V ++ D V R S S +L E + L+
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHS-ELIEKASEKLR----M 139
Query: 147 VGLDGTS-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVX--XX 203
V L+ + L+ P LSGG K+R+ +A+ L+ P +LILDEP + LD +A ++
Sbjct: 140 VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 204 XXXXXXXTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
T++ V+HD+ A L D + GG LVE
Sbjct: 200 LKKMLKITLIFVTHDIAVAAELADKVAVI-YGGNLVE 235
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS--- 73
+E DV++ P T L ++F +P + + G +GSGK+T+ +LL
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 74 -GSINIRGYNNDGXXXXXXXXXXXXKVGIVFQ----FPE--RYFVADNVLDEVIFGWPRQ 126
G N+ YN + +GIV Q F E +Y + LD +
Sbjct: 78 IGGKNVNKYNRNSIRSI---------IGIVPQDTILFNETIKYNILYGKLDATDEEVIKA 128
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+ S QL +++ ++ VG G L SGG ++R+A+A L++ P ++I DE
Sbjct: 129 TKSAQLYDFIEALPKKWDTIVGNKGMKL-------SGGERQRIAIARCLLKDPKIVIFDE 181
Query: 187 PLAGLDWKARADVVXXXXXXXXXXTILVVSHDLKEMAA 224
+ LD K T+++++H L +++
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS 219
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L+GVS S+ + LI G +GSGK+TL+ ++ G K G + + N
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDITNKEPAEL 79
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFG--WPRQS--GSIQLKEYLALN---LQRAINWV 147
+ FQ P+ VL+ ++ G P +S S+ K+++ +++A +
Sbjct: 80 YHYGIVRTFQTPQP-LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 148 GLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
S D+ LSGG + + + L+ P ++++DEP+AG+ D+
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 206 XXXX-XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
T L++ H L + +DH + M G + E R
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L+GVS S+ + LI G +GSGK+TL+ ++ G K G + + N
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDITNKEPAEL 79
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGW--PRQS--GSIQLKEYLALN---LQRAINWV 147
+ FQ P+ VL+ ++ G P +S S+ K+++ +++A +
Sbjct: 80 YHYGIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 148 GLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
S D+ LSGG + + + L+ P ++++DEP+AG+ D+
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 206 XXXX-XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
T L++ H L + +DH + M G + E R
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 33 DILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+ L VSF+ +P ++ L+ G SG+GK+T+L+LL +SG I I G +
Sbjct: 68 ETLQDVSFTVMPGQTLALV-GPSGAGKSTILRLLFRFYDISSGCIRIDGQD----ISQVT 122
Query: 92 XXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
+G+V Q + D + D + +G A + AI +G
Sbjct: 123 QASLRSHIGVVPQ--DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI-MAFPEG 179
Query: 152 --TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX 209
T + + LSGG K+R+A+A +++ P +++LDE + LD +
Sbjct: 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN 239
Query: 210 XTILVVSHDL 219
T +VV+H L
Sbjct: 240 RTTIVVAHRL 249
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ +DVS+ P V +L G++F+L + G +GSGK+T+ LL L +PT G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 77 NIRG-----YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
+ G Y++ +V V Q P + + + +G R +
Sbjct: 77 LLDGEPLVQYDHH---------YLHTQVAAVGQEP--LLFGRSFRENIAYGLTR---TPT 122
Query: 132 LKEYLALNLQR-AINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
++E A+ ++ A +++ G D T + + + LSGG ++ +ALA L++ P LLILD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 186 EPLAGLD 192
+ LD
Sbjct: 182 NATSALD 188
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 35/183 (19%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ VR+ ++ + LNG++FS+PE + + G+ G GK++LL L G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 78 IRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDE-VIFGWPRQSGSIQLKEYL 136
I+G V P++ ++ ++ L E ++FG QL+E
Sbjct: 64 IKGS--------------------VAYVPQQAWIQNDSLRENILFG-------CQLEEPY 96
Query: 137 ALNLQRAINWV-------GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++ +A + D T + + +LSGG K+R++LA + D+ + D+PL+
Sbjct: 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156
Query: 190 GLD 192
+D
Sbjct: 157 AVD 159
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+ ++F L + + G++G GK+TLL LL G+ +P G I +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--------------- 64
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGT 152
+G V QF F A +VLD V+ G + + K + +A++++ L
Sbjct: 65 --YQSIGFVPQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXX---XXXXXX 209
+ ++ SLSGG ++ + +A + L++LDEP + LD A D+V
Sbjct: 122 A-KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL-ANQDIVLSLLIDLAQSQN 179
Query: 210 XTILVVSHDLKEMAALVDHSWRMDMGGF 237
T++ +H ++ A+ + + ++ F
Sbjct: 180 MTVVFTTHQPNQVVAIANKTLLLNKQNF 207
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L+GVS S+ + LI G +GSGK+TL+ ++ G K G + + N
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDITNKEPAEL 79
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGW--PRQS--GSIQLKEYLALN---LQRAINWV 147
+ FQ P+ VL+ ++ G P +S S+ K+++ +++A +
Sbjct: 80 YHYGIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 148 GLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXX 205
S D+ LSGG + + + L+ P ++++D+P+AG+ D+
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 206 XXXX-XTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
T L++ H L + +DH + M G + E R
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ +DVS+ P V +L G++F+L + G +GSGK+T+ LL L +PT G +
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ G +V V Q P+ + ++ + + +G ++ ++E
Sbjct: 75 LLDG----KPLPQYEHRYLHRQVAAVGQEPQVF--GRSLQENIAYGLTQKP---TMEEIT 125
Query: 137 ALNLQRAINWV------GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
A ++ + G D T +D+ LSGG ++ +ALA L++ P +LILD+ +
Sbjct: 126 AAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 191 LDWKARADV 199
LD ++ V
Sbjct: 185 LDANSQLQV 193
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 34/194 (17%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERY 109
+ G++G GKTT+L++LAG P G N + +V F+ E Y
Sbjct: 30 VLGKNGVGKTTVLKILAGEIIPNFGDPNSK--------------VGKDEVLKRFRGKEIY 75
Query: 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG---------------LDGTSL 154
N E+ + IQ EY + L+ +N + L+ T+L
Sbjct: 76 ----NYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 155 -DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXXTIL 213
+KD + LSGG +RL +A L++ D+ I D+P + LD + R ++ ++
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191
Query: 214 VVSHDLKEMAALVD 227
VV HDL + L D
Sbjct: 192 VVDHDLIVLDYLTD 205
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 53/189 (28%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERY 109
I G +G GKTT ++L G GS+ + I+ P+R
Sbjct: 299 ILGPNGIGKTTFARILVGEITADEGSVT-------------------PEKQILSYKPQRI 339
Query: 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN---WVGLDGTS-------LDKDPH 159
F P G++Q +YL + A++ W + T L+ + +
Sbjct: 340 F-------------PNYDGTVQ--QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXXTILVVSHDL 219
LSGG ++L +A L + DL +LD+P + LD + R V I V+ +
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA---------KAIKRVTRER 435
Query: 220 KEMAALVDH 228
K + ++DH
Sbjct: 436 KAVTFIIDH 444
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 30/173 (17%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERY 109
I G +G GKTT +++LAG+ +PT G + + + + +Y
Sbjct: 373 IVGPNGIGKTTFVKMLAGVEEPTEGKV---------------------EWDLTVAYKPQY 411
Query: 110 FVADNVLDEVIFGWPRQSGSIQLK-EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
A+ + ++ + S +L + L + + + L D++ LSGG +R
Sbjct: 412 IKAE--YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQR 465
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXXXXXTILVVSHDL 219
+A+A L++ D+ +LDEP A LD + R V T LVV HD+
Sbjct: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX-XTI 212
LD++ H LSGG +R+A+A L++ DEP + LD + R V +
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 213 LVVSHDLKEMAALVD 227
LVV HDL + L D
Sbjct: 268 LVVEHDLAVLDYLSD 282
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 30/173 (17%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERY 109
I G +G GKTT +++LAG+ +PT G + + + + +Y
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPTEGKV---------------------EWDLTVAYKPQY 425
Query: 110 FVADNVLDEVIFGWPRQSGSIQLK-EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
A+ + ++ + S +L + L + + + L D++ LSGG +R
Sbjct: 426 IKAE--YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQR 479
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXXXXXTILVVSHDL 219
+A+A L++ D+ +LDEP A LD + R V T LVV HD+
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX-XTI 212
LD++ H LSGG +R+A+A L++ DEP + LD + R V +
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 213 LVVSHDLKEMAALVD 227
LVV HDL + L D
Sbjct: 282 LVVEHDLAVLDYLSD 296
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 30/173 (17%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERY 109
I G +G GKTT ++ LAG+ +PT G I + + + +Y
Sbjct: 317 IVGPNGIGKTTFVKXLAGVEEPTEGKI---------------------EWDLTVAYKPQY 355
Query: 110 FVADNVLDEVIFGWPRQSGSIQLK-EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
AD + ++ + + +L + L + + + L D++ + LSGG +R
Sbjct: 356 IKAD--YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL----YDREVNELSGGELQR 409
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADV--VXXXXXXXXXXTILVVSHDL 219
+A+A L++ D+ +LDEP A LD + R V T LVV HD+
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXX-XTI 212
L+++ LSGG +R+A+A L++ DEP + LD + R + ++
Sbjct: 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211
Query: 213 LVVSHDLKEMAALVD 227
LVV HDL + L D
Sbjct: 212 LVVEHDLAVLDYLSD 226
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ +DVS+ P V +L G++F+L + G +GSGK+T+ LL L +PT G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 77 NIRG-----YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
+ G Y++ +V V Q P + + + +G R +
Sbjct: 77 LLDGEPLVQYDHH---------YLHTQVAAVGQEP--LLFGRSFRENIAYGLTR---TPT 122
Query: 132 LKEYLALNLQR-AINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
++E A+ ++ A +++ G D T + + + L+ G ++ +ALA L++ P LLILD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 186 EPLAGLD 192
+ LD
Sbjct: 182 NATSALD 188
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXX 90
Q ++N VS + I G +G+GK+TLL+LL G P+ G ++ G N +
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 91 XXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
++ Q+ E F + EVI G Q ++ L + + D
Sbjct: 83 LARTR----AVMRQYSELAFPFS--VSEVIQMGRAPYGGSQDRQALQQVMAQT------D 130
Query: 151 GTSL-DKDPHSLSGGYKRRLALAIQLVQV------PDLLILDEPLAGLD 192
+L +D LSGG ++R+ LA L Q+ P L LDEP + LD
Sbjct: 131 CLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
+V QF + + + + +IFG + EY A LQ+ I +
Sbjct: 100 ----RVSFCSQFS--WIMPGTIKENIIFG-------VSYDEYRYKSVVKACQLQQDITKF 146
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
+V QF + + + + +IFG + EY A LQ+ I +
Sbjct: 100 ----RVSFCSQFS--WIMPGTIKENIIFG-------VSYDEYRYKSVVKACQLQQDITKF 146
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN-------IRGYNNDGXXXXXXXXXX 95
P + GL+ G +G GK+T L++LAG KP G + I Y
Sbjct: 102 PGQVLGLV-GTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 96 XXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLK-EYLALNLQRAINWVGLDGTS 153
+ + + P+ DN+ I G ++ G + +L+ E +++R I + L+
Sbjct: 161 EDDIKAIIK-PQ---YVDNI-PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV- 214
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXXT-I 212
L +D LSGG +R A+ + VQ D+ + DEP + LD K R + +
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 213 LVVSHDLKEMAALVD 227
+ V HDL + L D
Sbjct: 275 ICVEHDLSVLDYLSD 289
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 33/203 (16%)
Query: 30 TQVD-ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXX 88
TQ D +LN + ++ G +G+GKTTL++LLAG KP G +I N
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ-DIPKLN------ 414
Query: 89 XXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK-EYLALNLQR-AINW 146
I +FP G RQ +++ ++L Q +
Sbjct: 415 -----VSMKPQKIAPKFP---------------GTVRQLFFKKIRGQFLNPQFQTDVVKP 454
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR--ADVVXXXX 204
+ +D +D++ LSGG +R+A+ + L D+ ++DEP A LD + R V
Sbjct: 455 LRIDDI-IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 205 XXXXXXTILVVSHDLKEMAALVD 227
T +V HD L D
Sbjct: 514 ILHNKKTAFIVEHDFIMATYLAD 536
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81
+V +R +L+GV+FS+ S + G +GSGK+TL+ L+ L P G + +
Sbjct: 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 82 NNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNL 140
+ G + P+ + + E + W R+ + ++ E A +
Sbjct: 406 DVRTVKLKDLR-------GHISAVPQETVLFSGTIKENL-KWGREDATDDEIVE--AAKI 455
Query: 141 QRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ +++ G D + +++ + SGG K+RL++A LV+ P +LILD+ + +D
Sbjct: 456 AQIHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
++ QF + + + + +IFG + EY A L+ I+ +
Sbjct: 70 ----RISFCSQFS--WIMPGTIKENIIFG-------VSYDEYRYRSVIKACQLEEDISKF 116
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY------LALNLQRAIN-W 146
++ QF + + + + +IFG + EY A L+ I+ +
Sbjct: 82 ----RISFCSQFS--WIMPGTIKENIIFG-------VSYDEYRYRSVIKACQLEEDISKF 128
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 129 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 94 XXXXKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN-WVG 148
+V QF P + +N++ V + R ++ A LQ+ I +
Sbjct: 100 ----RVSFCSQFSWIMPGT--IKENIISGVSYDEYRYKSVVK-----ACQLQQDITKFAE 148
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 149 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 94 XXXXKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN-WVG 148
+V QF P + +N++ V + R ++ A LQ+ I +
Sbjct: 100 ----RVSFCSQFSWIMPGT--IKENIIRGVSYDEYRYKSVVK-----ACQLQQDITKFAE 148
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 149 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 34/166 (20%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
+V QF ++ + E I G + EY A LQ+ I +
Sbjct: 100 ----RVSFCSQFS---WIMPGTIKENIIG-------VSYDEYRYKSVVKACQLQQDITKF 145
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 46/214 (21%)
Query: 16 SCLEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
S LE+RD+S Y P +L ++ ++ + + G +G GKTTLL+ ++ KP
Sbjct: 9 SKLEIRDLSVGYDKP-----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63
Query: 74 GSINIRGYNNDGXXXXXXXXXXXXKV-GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
G I G KV G +F PE V PR+ I +
Sbjct: 64 GEIIYNG-------------VPITKVKGKIFFLPEEIIV------------PRK---ISV 95
Query: 133 KEYL---------ALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
++YL +N ++ + ++ L K LS G RR+ LA L+ ++
Sbjct: 96 EDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155
Query: 183 ILDEPLAGLDWKARADVVXXXXXXXXXXTILVVS 216
+LD+P+ +D ++ V+ I+++S
Sbjct: 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 94 XXXXKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN-WVG 148
++ QF P + +N++ V + R I+ A L+ I+ +
Sbjct: 100 ----RISFCSQFSWIMPGT--IKENIIAGVSYDEYRYRSVIK-----ACQLEEDISKFAE 148
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 149 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
++ QF ++ + E I G + EY A L+ I+ +
Sbjct: 70 ----RISFCSQFS---WIMPGTIKENIIG-------VSYDEYRYRSVIKACQLEEDISKF 115
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 116 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPER 108
+I G +GSGKTTLL+ ++GL P SG+I I G + PE
Sbjct: 34 IILGPNGSGKTTLLRAISGLL-PYSGNIFING---------MEVRKIRNYIRYSTNLPEA 83
Query: 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
Y + V +++++ + G L L L + +A+ L L + + LS G
Sbjct: 84 YEIGVTV-NDIVYLYEELKG---LDRDLFLEMLKALK---LGEEILRRKLYKLSAGQSVL 136
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXXTILVVSHDL 219
+ ++ L P+++ LDEP +D AR V+ IL V+H+L
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDA-ARRHVISRYIKEYGKEGIL-VTHEL 185
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ V+D++ + IL +SFS+ P + GL+ GR+GSGK+TLL L T G I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLL-GRTGSGKSTLLSAFLRLLN-TEGEI 77
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVL-----------DEVIFGWPR 125
I G + D G++ P++ F+ D+ I+
Sbjct: 78 QIDGVSWDSITLEQWRKA----FGVI---PQKVFIFSGTFRKNLDPNAAHSDQEIWKVAD 130
Query: 126 QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
+ G + E L ++V +DG + LS G+K+ + LA ++ +L+LD
Sbjct: 131 EVGLRSVIEQFPGKL----DFVLVDGGCV------LSHGHKQLMCLARSVLSKAKILLLD 180
Query: 186 EPLAGLD 192
EP A LD
Sbjct: 181 EPSAHLD 187
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXX 92
+L ++F + P + L+ G +GSGKTT++ LL G I + G +
Sbjct: 370 VLKDITFHIKPGQKVALV-GPTGSGKTTIVNLLMRFYDVDRGQILVDGID----IRKIKR 424
Query: 93 XXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV----- 147
+GIV Q + + V + + +G P + ++KE A L + +++
Sbjct: 425 SSLRSSIGIVLQ--DTILFSTTVKENLKYGNPGATDE-EIKE--AAKLTHSDHFIKHLPE 479
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXX 207
G + T L + LS G ++ LA+ + P +LILDE + +D K +
Sbjct: 480 GYE-TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 208 XXXTILVVSHDLKEM 222
T ++++H L +
Sbjct: 539 EGKTSIIIAHRLNTI 553
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
++ QF + + + + +IFG + EY A L+ I+ +
Sbjct: 100 ----RISFCSQFS--WIMPGTIKENIIFG-------VSYDEYRYRSVIKACQLEEDISKF 146
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LS G + +++LA + + DL +LD P LD
Sbjct: 147 AEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 15/213 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXX 91
+ + G+ +P + G +G+GKTT L +AGL + G I G +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD-----ITNK 73
Query: 92 XXXXXXKVGIVFQFPE--RYFVADNVLDEVIFG-WPRQSGSIQLKEYLALNLQRAINWVG 148
+ GI PE R F V + + G + R+ KE + +L+ +
Sbjct: 74 PAHVINRXGIAL-VPEGRRIFPELTVYENLXXGAYNRKD-----KEGIKRDLEWIFSLFP 127
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXX 208
L + +LSGG ++ LA+ L P LL DEP GL ++V
Sbjct: 128 RLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 209 X-XTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
TIL+V + + + + ++ G ++E
Sbjct: 188 EGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVI---FGWPRQSGSIQLKEYLALNLQRAIN-WVGL 149
I F + + + + +I + R I+ A L+ I+ +
Sbjct: 101 -------ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIK-----ACQLEEDISKFAEK 148
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ ++V ++ ++ PGT + ++F S + G +G+GK+TL+ +L G PTSG
Sbjct: 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 76 I 76
+
Sbjct: 730 V 730
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+LSGG+K +LALA +++ D+L+LDEP LD
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 118 EVIFGWPRQSGSIQLKEYLA---------LNLQRAINWVGLDGTSLDKDPHS----LSGG 164
E++ + + +KE LA ++ + +GLD + HS LSGG
Sbjct: 849 ELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS---HSRIRGLSGG 905
Query: 165 YKRRLALAIQLVQVPDLLILDEPLAGLD 192
K +L LA Q P L++LDEP LD
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVI---FGWPRQSGSIQLKEYLALNLQRAIN-WVGL 149
I F + + + + +I + R I+ A L+ I+ +
Sbjct: 101 -------ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIK-----ACQLEEDISKFAEK 148
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 33/195 (16%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--S 73
S LE+RD+ G IL GV+ +P+ + G +G+GK+TL ++LAG + T
Sbjct: 2 SQLEIRDLWASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 74 GSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPE-----------RYFVADNVLDEVIFG 122
G I + G N + + FQ+P R + + EV
Sbjct: 60 GEILLDGEN---ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVA 116
Query: 123 --WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180
W + +++L ++ L R +N SGG K+R + LV P
Sbjct: 117 EFWTKVKKALELLDWDESYLSRYLN-------------EGFSGGEKKRNEILQLLVLEPT 163
Query: 181 LLILDEPLAGLDWKA 195
+LDE +GLD A
Sbjct: 164 YAVLDETDSGLDIDA 178
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+LSGG+K +LALA +++ D+L+LDEP LD
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++V + ++ PGT + ++F S + G +G+GK+TL+ +L G PTSG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
LSGG K +L LA Q P L++LDEP LD
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+LSGG+K +LALA +++ D+L+LDEP LD
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++V + ++ PGT + ++F S + G +G+GK+TL+ +L G PTSG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
LSGG K +L LA Q P L++LDEP LD
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWK-ARADVVXXX 203
VGL+ SL + +LSGG +R+ LA Q+ V L +LDEP GL + R +
Sbjct: 508 VGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLT 567
Query: 204 XXXXXXXTILVVSHDLKEMAALVDHS-WRMDMG 235
T++VV HD ++H+ W +D+G
Sbjct: 568 RLRDLGNTLIVVEHD----EDTIEHADWIVDIG 596
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 142 RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDW-KARA 197
R + VGL L + +LSGG +R+ LA +L + + ILDEP GL + R
Sbjct: 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRK 904
Query: 198 DVVXXXXXXXXXXTILVVSHDL 219
+ T++V+ H+L
Sbjct: 905 LLNVINGLVDKGNTVIVIEHNL 926
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXX 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 94 XXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
++ QF ++ + E I G + EY A L+ I+ +
Sbjct: 100 ----RISFCSQFS---WIMPGTIKENIIG-------VSYDEYRYRSVIKACQLEEDISKF 145
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
D L + +LS G + +++LA + + DL +LD P LD
Sbjct: 146 AEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWKARADVVXXXX 204
VGLD +L + +LSGG +R+ LA Q+ L +LDEP GL + ++
Sbjct: 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 248
Query: 205 XXXXX-XTILVVSHDLKEMAA 224
T++VV HD M A
Sbjct: 249 SMRDLGNTLIVVEHDEDTMLA 269
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD---LLILDEPLAGL---DWKARADVV 200
VGL L + +LSGG +R+ LA +L + + L ILDEP GL D DV+
Sbjct: 530 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 589
Query: 201 XXXXXXXXXXTILVVSHDL 219
T+LV+ H+L
Sbjct: 590 --HRLVDNGDTVLVIEHNL 606
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWKARADVVXXXX 204
VGLD +L + +LSGG +R+ LA Q+ L +LDEP GL + ++
Sbjct: 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 205 XXXXX-XTILVVSHDLKEMAA 224
T++VV HD M A
Sbjct: 551 SMRDLGNTLIVVEHDEDTMLA 571
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD---LLILDEPLAGL---DWKARADVV 200
VGL L + +LSGG +R+ LA +L + + L ILDEP GL D DV+
Sbjct: 832 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 891
Query: 201 XXXXXXXXXXTILVVSHDL 219
T+LV+ H+L
Sbjct: 892 --HRLVDNGDTVLVIEHNL 908
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL 62
G + L VS +P +F + G SGSGK+TL+
Sbjct: 634 GAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWKARADVVXXXX 204
VGL+ +L + +LSGG +R+ LA Q+ + +LDEP GL + ++
Sbjct: 451 VGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLK 510
Query: 205 XXXXX-XTILVVSHDLKEMAALVDH 228
T++VV HD +E+ DH
Sbjct: 511 KLRDLGNTVIVVEHD-EEVIRNADH 534
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 142 RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWK-ARA 197
+ ++ VGL L + +LSGG +R+ LA +L + L ILDEP GL ++ R
Sbjct: 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846
Query: 198 DVVXXXXXXXXXXTILVVSHDL 219
V T++V+ H+L
Sbjct: 847 LVEVLHRLVDRGNTVIVIEHNL 868
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGXXXXXX 91
IL G+S + I G +GSGK+TL LAG + T G++ +G +
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD---LLALSP 72
Query: 92 XXXXXXKVGIVFQFP-ERYFVADNVLDEVIFGWPRQ-SGSIQLKEYLALNL-QRAINWVG 148
+ + FQ+P E V++ + R G L + +L + I +
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 149 LDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ L + + SGG K+R + V P+L ILDE +GLD A
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGXXXXXX 91
IL G+S + I G +GSGK+TL LAG + T G++ +G +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD---LLALSP 91
Query: 92 XXXXXXKVGIVFQFP-ERYFVADNVLDEVIFGWPRQ-SGSIQLKEYLALNL-QRAINWVG 148
+ + FQ+P E V++ + R G L + +L + I +
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 149 LDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ L + + SGG K+R + V P+L ILDE +GLD A
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEMAALV 226
RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 282 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAA 340
Query: 227 DHSWRMDM 234
DH R+ +
Sbjct: 341 DHVIRISL 348
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEMAALV 226
RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAA 320
Query: 227 DHSWRMDM 234
DH R+ +
Sbjct: 321 DHVIRISL 328
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWKARADVVXXXX 204
VGLD +L + +LSGG +R+ LA Q+ L +LDEP GL + ++
Sbjct: 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 205 XXXXX-XTILVVSHD 218
T++VV HD
Sbjct: 551 SXRDLGNTLIVVEHD 565
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD---LLILDEPLAGL---DWKARADVV 200
VGL L + +LSGG +R+ LA +L + + L ILDEP GL D DV+
Sbjct: 832 VGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 891
Query: 201 XXXXXXXXXXTILVVSHDL 219
T+LV+ H+L
Sbjct: 892 --HRLVDNGDTVLVIEHNL 908
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL 62
G + L VS +P +F + G SGSGK+TL+
Sbjct: 634 GAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEM 222
G RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 67 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EEL 125
Query: 223 AALVDHSWRMDM 234
DH R+ +
Sbjct: 126 KDAADHVIRISL 137
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEMAALV 226
RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 102 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAA 160
Query: 227 DHSWRMDM 234
DH R+ +
Sbjct: 161 DHVIRISL 168
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEM 222
G RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 63 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EEL 121
Query: 223 AALVDHSWRMDM 234
DH R+ +
Sbjct: 122 KDAADHVIRISL 133
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVVSHDLKEMAALV 226
RLA+++ L LLILDEP LD + R ++ +++VSHD +E+
Sbjct: 97 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAA 155
Query: 227 DHSWRMDM 234
DH R+ +
Sbjct: 156 DHVIRISL 163
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVP-------DLLILDEPLAGLDWKARADV-VXXXXX 205
L + + LSGG +R+ LA ++Q+ LL+LD+P+ LD ++ +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
Query: 206 XXXXXTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
I++ SHDL +W + G L R
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVXXX 203
VGL L + LSGG +R+ LA +L + + +LDEP GL ADV
Sbjct: 717 VGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH---PADVERLQ 773
Query: 204 XXXX----XXXTILVVSHDLKEMAALVDHSWRMDM-------GGFLVEQRIPV 245
T++ V H ++ +AA W +D+ GG LV Q P
Sbjct: 774 RQLVKLVDAGNTVIAVEHKMQVVAA---SDWVLDIGPGAGEDGGRLVAQGTPA 823
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLL-------ILDEPLAGLDWKARADVVXXXXXXXXXXTI 212
+LSGG + +AL+++L L+ ILDEP LD RA + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 213 LVVSH--DLKEMAALV 226
++++H +L+++A ++
Sbjct: 340 IIITHHRELEDVADVI 355
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
D L + +++P+K + L G SGKTTL L L + ++N+
Sbjct: 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 187
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
D L + +++P+K + L G SGKTTL L L + ++N+
Sbjct: 148 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 193
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
D L + +++P+K + L G SGKTTL L L + ++N+
Sbjct: 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 202
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
D L + +++P+K + L G SGKTTL L L + ++N+
Sbjct: 150 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 195
>pdb|3C2T|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C2T|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 12 SCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSK 70
+ Y V DV P ++ + G+S +P+ ++G I RSG + +LAG + +
Sbjct: 23 AAGYDISSVEDVVV-PAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDE 81
Query: 71 PTSGSINIRGYNN 83
+G + + YN
Sbjct: 82 DYTGEVKVILYNT 94
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSG 74
I G +GSGKTTLLQ L K G
Sbjct: 7 IVGNTGSGKTTLLQQLXKTKKSDLG 31
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSG 74
I G +GSGKTTLLQ L K G
Sbjct: 5 IVGNTGSGKTTLLQQLXKTKKSDLG 29
>pdb|3CA9|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3CA9|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 165
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 12 SCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSK 70
+ Y V DV P ++ + G+S +P+ ++G I RSG + +LAG + +
Sbjct: 39 AAGYDISSVEDVVV-PAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDE 97
Query: 71 PTSGSINIRGYNN 83
+G + + YN
Sbjct: 98 DYTGEVKVILYNT 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,007,172
Number of Sequences: 62578
Number of extensions: 262938
Number of successful extensions: 883
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 191
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)