Query 035832
Match_columns 245
No_of_seqs 301 out of 1094
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.4E-68 7.4E-73 435.4 19.5 217 16-241 1-218 (240)
2 COG1135 AbcC ABC-type metal io 100.0 5.9E-64 1.3E-68 429.2 19.7 220 17-242 1-225 (339)
3 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-62 1E-66 408.7 24.6 212 16-243 2-217 (248)
4 COG1120 FepC ABC-type cobalami 100.0 6.6E-62 1.4E-66 414.0 21.6 220 16-243 1-223 (258)
5 COG1136 SalX ABC-type antimicr 100.0 7E-62 1.5E-66 406.5 21.1 218 17-239 1-222 (226)
6 COG1125 OpuBA ABC-type proline 100.0 4E-62 8.7E-67 407.7 18.2 215 17-241 1-218 (309)
7 COG1127 Ttg2A ABC-type transpo 100.0 8.7E-62 1.9E-66 403.1 19.3 224 14-243 5-230 (263)
8 COG2884 FtsE Predicted ATPase 100.0 3E-61 6.5E-66 386.9 20.9 220 17-243 1-221 (223)
9 COG3638 ABC-type phosphate/pho 100.0 6.6E-61 1.4E-65 396.9 17.5 225 15-243 1-232 (258)
10 COG3842 PotA ABC-type spermidi 100.0 1.7E-60 3.6E-65 421.5 21.1 214 15-240 3-218 (352)
11 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-59 2.3E-64 398.8 24.7 216 15-241 2-220 (254)
12 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-59 2.6E-64 398.6 23.4 219 16-242 2-222 (235)
13 COG3839 MalK ABC-type sugar tr 100.0 2.6E-59 5.6E-64 411.9 23.3 212 16-240 2-215 (338)
14 COG1124 DppF ABC-type dipeptid 100.0 4.5E-59 9.7E-64 388.1 22.0 219 16-242 2-225 (252)
15 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-59 3E-64 401.6 19.5 217 16-240 1-219 (345)
16 TIGR02314 ABC_MetN D-methionin 100.0 9.6E-58 2.1E-62 407.7 24.2 220 17-242 1-224 (343)
17 COG1117 PstB ABC-type phosphat 100.0 1.4E-58 3.1E-63 377.7 16.4 219 15-242 5-231 (253)
18 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-56 2.8E-61 402.8 26.0 214 16-241 2-217 (356)
19 PRK11432 fbpC ferric transport 100.0 1.8E-56 4E-61 400.9 26.6 214 15-241 4-219 (351)
20 PRK13537 nodulation ABC transp 100.0 2E-56 4.2E-61 394.7 24.7 216 15-242 5-221 (306)
21 TIGR03265 PhnT2 putative 2-ami 100.0 3E-56 6.5E-61 400.0 26.0 214 15-241 2-217 (353)
22 TIGR00960 3a0501s02 Type II (G 100.0 9.6E-57 2.1E-61 377.8 21.3 215 17-237 1-216 (216)
23 PRK13536 nodulation factor exp 100.0 3.5E-56 7.6E-61 397.7 25.9 226 5-242 29-255 (340)
24 COG1131 CcmA ABC-type multidru 100.0 2E-56 4.2E-61 392.0 22.9 215 16-241 3-219 (293)
25 cd03261 ABC_Org_Solvent_Resist 100.0 7.6E-56 1.6E-60 377.0 24.1 217 18-241 1-219 (235)
26 PRK09452 potA putrescine/sperm 100.0 1.1E-55 2.4E-60 398.6 26.5 215 14-241 11-227 (375)
27 cd03259 ABC_Carb_Solutes_like 100.0 1E-55 2.2E-60 370.9 23.8 210 18-240 1-212 (213)
28 PRK10851 sulfate/thiosulfate t 100.0 1.6E-55 3.5E-60 395.2 26.7 216 16-241 1-219 (353)
29 COG4555 NatA ABC-type Na+ tran 100.0 3E-57 6.4E-62 366.9 13.4 217 17-244 1-218 (245)
30 PRK11629 lolD lipoprotein tran 100.0 1.9E-55 4E-60 374.3 24.8 224 14-243 2-229 (233)
31 PRK11607 potG putrescine trans 100.0 2.9E-55 6.3E-60 396.4 27.0 218 12-242 14-233 (377)
32 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.8E-56 1.3E-60 373.4 20.9 214 18-237 1-218 (218)
33 PRK13643 cbiO cobalt transport 100.0 1.7E-55 3.7E-60 385.7 24.5 223 17-242 1-227 (288)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 2E-55 4.4E-60 395.5 25.5 212 18-242 6-222 (362)
35 PRK13634 cbiO cobalt transport 100.0 2.4E-55 5.2E-60 385.2 24.7 222 17-241 2-228 (290)
36 PRK11153 metN DL-methionine tr 100.0 1.8E-55 3.9E-60 394.1 24.3 219 17-241 1-223 (343)
37 PRK13637 cbiO cobalt transport 100.0 4.5E-55 9.8E-60 382.9 26.0 219 17-241 2-227 (287)
38 COG0411 LivG ABC-type branched 100.0 2.8E-56 6.1E-61 371.5 17.3 222 15-243 2-234 (250)
39 cd03296 ABC_CysA_sulfate_impor 100.0 7.1E-55 1.5E-59 372.0 26.3 215 17-241 2-219 (239)
40 PRK11000 maltose/maltodextrin 100.0 4.9E-55 1.1E-59 394.5 26.5 213 16-241 2-216 (369)
41 PRK13631 cbiO cobalt transport 100.0 6.5E-55 1.4E-59 386.9 25.9 232 8-242 12-259 (320)
42 PRK13646 cbiO cobalt transport 100.0 4.6E-55 9.9E-60 382.7 24.2 223 17-242 2-229 (286)
43 cd03226 ABC_cobalt_CbiO_domain 100.0 2.9E-55 6.4E-60 366.1 21.8 204 19-238 1-205 (205)
44 PRK13651 cobalt transporter AT 100.0 5E-55 1.1E-59 385.4 24.4 222 17-241 2-247 (305)
45 PRK13647 cbiO cobalt transport 100.0 5.4E-55 1.2E-59 380.1 23.9 218 16-242 3-221 (274)
46 COG1137 YhbG ABC-type (unclass 100.0 1.1E-56 2.4E-61 363.2 12.0 221 15-243 2-223 (243)
47 PRK15079 oligopeptide ABC tran 100.0 3.8E-55 8.1E-60 389.9 23.1 226 14-241 5-244 (331)
48 TIGR01288 nodI ATP-binding ABC 100.0 8.4E-55 1.8E-59 383.9 24.7 215 15-241 2-217 (303)
49 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.6E-54 3.6E-59 365.3 25.3 212 18-243 1-218 (220)
50 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-54 2.9E-59 363.9 24.7 210 18-240 1-212 (213)
51 cd03265 ABC_DrrA DrrA is the A 100.0 7.3E-55 1.6E-59 367.5 23.1 212 18-241 1-214 (220)
52 PRK09536 btuD corrinoid ABC tr 100.0 7.9E-55 1.7E-59 395.6 25.1 219 16-242 2-222 (402)
53 cd03266 ABC_NatA_sodium_export 100.0 6.2E-55 1.3E-59 367.2 22.5 214 17-240 1-217 (218)
54 cd03263 ABC_subfamily_A The AB 100.0 7.5E-55 1.6E-59 367.2 22.9 214 18-241 1-214 (220)
55 PRK13641 cbiO cobalt transport 100.0 1.2E-54 2.5E-59 380.3 24.5 221 17-241 2-227 (287)
56 COG4175 ProV ABC-type proline/ 100.0 1.2E-55 2.5E-60 378.5 16.8 221 17-242 4-248 (386)
57 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-54 2.6E-59 369.5 23.0 217 18-241 1-225 (236)
58 TIGR02673 FtsE cell division A 100.0 8.8E-55 1.9E-59 365.3 21.7 213 17-236 1-214 (214)
59 PRK13650 cbiO cobalt transport 100.0 1.5E-54 3.3E-59 378.1 24.0 217 16-241 3-222 (279)
60 COG3840 ThiQ ABC-type thiamine 100.0 7.3E-55 1.6E-59 348.0 19.9 211 17-242 1-213 (231)
61 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-54 2.4E-59 366.3 22.1 216 17-238 1-220 (221)
62 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-54 3.3E-59 381.9 23.9 213 17-241 2-214 (301)
63 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-54 2.7E-59 370.9 21.9 221 17-241 1-228 (243)
64 PRK11831 putative ABC transpor 100.0 3E-54 6.6E-59 374.4 24.6 220 15-241 5-226 (269)
65 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-54 2.7E-59 363.6 21.2 210 19-236 1-211 (211)
66 PRK11022 dppD dipeptide transp 100.0 2.1E-54 4.6E-59 384.6 23.8 223 17-241 3-236 (326)
67 PRK10584 putative ABC transpor 100.0 2.9E-54 6.3E-59 365.5 23.5 220 15-240 4-227 (228)
68 PRK10908 cell division protein 100.0 2.6E-54 5.6E-59 364.6 22.9 217 17-240 1-218 (222)
69 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-54 5.7E-59 365.6 22.9 216 18-242 1-223 (227)
70 cd03257 ABC_NikE_OppD_transpor 100.0 3.8E-54 8.3E-59 364.4 23.8 222 17-240 1-227 (228)
71 cd03264 ABC_drug_resistance_li 100.0 2.1E-54 4.5E-59 362.4 21.7 210 18-240 1-210 (211)
72 cd03258 ABC_MetN_methionine_tr 100.0 2.2E-54 4.8E-59 367.4 22.1 219 17-241 1-223 (233)
73 cd03218 ABC_YhbG The ABC trans 100.0 4.5E-54 9.7E-59 365.2 23.9 214 18-241 1-215 (232)
74 PRK13636 cbiO cobalt transport 100.0 4.4E-54 9.6E-59 375.9 24.5 220 15-241 3-224 (283)
75 PRK13635 cbiO cobalt transport 100.0 5.1E-54 1.1E-58 374.9 24.8 218 15-241 3-222 (279)
76 TIGR03411 urea_trans_UrtD urea 100.0 8.6E-54 1.9E-58 365.7 25.4 219 16-241 1-224 (242)
77 PRK11308 dppF dipeptide transp 100.0 3.9E-54 8.4E-59 383.0 24.0 224 15-241 3-237 (327)
78 PRK11247 ssuB aliphatic sulfon 100.0 8.9E-54 1.9E-58 369.1 25.4 206 15-242 10-217 (257)
79 cd03256 ABC_PhnC_transporter A 100.0 3.5E-54 7.6E-59 367.6 22.4 220 18-241 1-227 (241)
80 cd03268 ABC_BcrA_bacitracin_re 100.0 3.4E-54 7.3E-59 360.4 21.8 206 18-240 1-207 (208)
81 TIGR01186 proV glycine betaine 100.0 2.1E-54 4.5E-59 388.4 21.9 209 26-241 2-212 (363)
82 PRK13649 cbiO cobalt transport 100.0 8.1E-54 1.8E-58 373.6 24.9 222 17-241 2-227 (280)
83 PRK11248 tauB taurine transpor 100.0 1.6E-53 3.5E-58 367.2 26.4 209 17-241 1-213 (255)
84 COG0444 DppD ABC-type dipeptid 100.0 1.9E-54 4E-59 374.3 20.3 225 17-242 1-237 (316)
85 PRK11264 putative amino-acid A 100.0 8.3E-54 1.8E-58 367.5 24.2 219 17-241 3-226 (250)
86 cd03292 ABC_FtsE_transporter F 100.0 2.6E-54 5.7E-59 362.2 20.6 213 18-237 1-214 (214)
87 PRK10070 glycine betaine trans 100.0 7E-54 1.5E-58 389.2 24.9 221 16-241 3-247 (400)
88 cd03269 ABC_putative_ATPase Th 100.0 6.5E-54 1.4E-58 359.2 22.8 208 18-240 1-209 (210)
89 PRK15093 antimicrobial peptide 100.0 6.4E-54 1.4E-58 382.3 23.9 226 16-241 2-241 (330)
90 PRK09493 glnQ glutamine ABC tr 100.0 9.3E-54 2E-58 365.2 23.9 217 17-241 1-218 (240)
91 PRK13652 cbiO cobalt transport 100.0 1.6E-53 3.4E-58 371.4 25.0 217 16-241 2-220 (277)
92 TIGR00972 3a0107s01c2 phosphat 100.0 1.8E-53 3.9E-58 365.0 24.9 216 17-241 1-225 (247)
93 PRK11300 livG leucine/isoleuci 100.0 1.5E-53 3.2E-58 366.9 24.3 220 15-241 3-236 (255)
94 PRK09473 oppD oligopeptide tra 100.0 1.1E-53 2.4E-58 380.5 24.1 227 13-241 8-244 (330)
95 cd03224 ABC_TM1139_LivF_branch 100.0 8.7E-54 1.9E-58 361.0 22.2 212 18-241 1-214 (222)
96 PRK13638 cbiO cobalt transport 100.0 1.3E-53 2.8E-58 370.8 23.7 217 17-241 1-218 (271)
97 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-53 2.2E-58 371.2 22.7 216 19-241 26-243 (269)
98 PRK14247 phosphate ABC transpo 100.0 2.9E-53 6.2E-58 364.3 25.2 218 16-241 2-227 (250)
99 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.1E-53 4.6E-58 363.5 24.3 215 18-241 1-218 (242)
100 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-53 6.6E-58 361.3 25.1 212 17-241 1-214 (236)
101 cd03298 ABC_ThiQ_thiamine_tran 100.0 3E-53 6.5E-58 355.4 24.7 208 18-240 1-210 (211)
102 cd03262 ABC_HisP_GlnQ_permease 100.0 9.3E-54 2E-58 358.7 21.5 212 18-237 1-213 (213)
103 PRK13639 cbiO cobalt transport 100.0 2.5E-53 5.3E-58 369.8 24.2 218 17-241 1-219 (275)
104 PRK11614 livF leucine/isoleuci 100.0 1.7E-53 3.7E-58 363.0 22.6 216 15-242 3-220 (237)
105 PRK13632 cbiO cobalt transport 100.0 2.5E-53 5.5E-58 369.0 24.0 219 14-241 4-224 (271)
106 PRK10619 histidine/lysine/argi 100.0 3.3E-53 7.1E-58 365.5 24.6 223 14-241 2-234 (257)
107 PRK14242 phosphate transporter 100.0 3.9E-53 8.4E-58 364.0 24.8 221 13-241 2-230 (253)
108 PRK10575 iron-hydroxamate tran 100.0 3.3E-53 7.1E-58 367.1 24.3 220 14-241 8-230 (265)
109 PRK13648 cbiO cobalt transport 100.0 3.5E-53 7.7E-58 367.7 24.4 219 14-241 4-224 (269)
110 PRK13548 hmuV hemin importer A 100.0 6.3E-53 1.4E-57 364.1 25.8 214 17-241 2-223 (258)
111 PRK13644 cbiO cobalt transport 100.0 3.1E-53 6.8E-58 369.0 23.9 216 17-241 1-217 (274)
112 TIGR02769 nickel_nikE nickel i 100.0 2.4E-53 5.1E-58 368.0 23.0 222 17-241 2-233 (265)
113 PRK11124 artP arginine transpo 100.0 3.6E-53 7.9E-58 362.0 23.8 219 17-241 2-223 (242)
114 TIGR01188 drrA daunorubicin re 100.0 1.2E-53 2.6E-58 376.4 21.2 205 25-241 1-206 (302)
115 PRK14273 phosphate ABC transpo 100.0 5.5E-53 1.2E-57 363.4 24.8 220 13-241 3-231 (254)
116 PRK10895 lipopolysaccharide AB 100.0 4.2E-53 9.1E-58 361.4 23.8 217 16-241 2-219 (241)
117 PRK13640 cbiO cobalt transport 100.0 3.6E-53 7.7E-58 370.1 23.9 218 15-241 3-225 (282)
118 PRK10253 iron-enterobactin tra 100.0 4.4E-53 9.6E-58 366.3 24.2 220 14-241 4-226 (265)
119 PRK13645 cbiO cobalt transport 100.0 7.1E-53 1.5E-57 369.3 25.7 223 16-241 5-233 (289)
120 cd03235 ABC_Metallic_Cations A 100.0 1.7E-53 3.6E-58 357.4 20.6 208 19-239 1-211 (213)
121 PRK11231 fecE iron-dicitrate t 100.0 3.8E-53 8.1E-58 364.7 23.2 217 17-241 2-220 (255)
122 PRK14250 phosphate ABC transpo 100.0 6.7E-53 1.5E-57 360.4 24.4 211 16-241 2-214 (241)
123 PRK13633 cobalt transporter AT 100.0 6.5E-53 1.4E-57 368.1 24.8 218 16-241 3-226 (280)
124 COG0410 LivF ABC-type branched 100.0 2.6E-53 5.6E-58 351.3 21.0 216 16-242 2-220 (237)
125 COG4181 Predicted ABC-type tra 100.0 7.6E-54 1.7E-58 339.2 16.9 219 16-240 5-227 (228)
126 PRK11701 phnK phosphonate C-P 100.0 4.3E-53 9.3E-58 365.0 23.1 223 15-241 4-234 (258)
127 PRK14268 phosphate ABC transpo 100.0 8.4E-53 1.8E-57 363.2 24.8 220 13-241 8-235 (258)
128 TIGR03415 ABC_choXWV_ATP choli 100.0 4.3E-53 9.3E-58 381.7 23.8 205 32-241 37-247 (382)
129 PRK14267 phosphate ABC transpo 100.0 8.7E-53 1.9E-57 361.9 24.3 220 16-241 3-230 (253)
130 PRK14235 phosphate transporter 100.0 1.2E-52 2.5E-57 364.1 25.2 222 13-241 15-244 (267)
131 PRK11144 modC molybdate transp 100.0 1.3E-52 2.7E-57 376.9 25.9 209 17-241 1-211 (352)
132 PRK15112 antimicrobial peptide 100.0 1.1E-52 2.4E-57 364.3 24.5 221 15-241 2-232 (267)
133 COG1123 ATPase components of v 100.0 6E-53 1.3E-57 388.2 24.1 224 14-241 277-512 (539)
134 TIGR01277 thiQ thiamine ABC tr 100.0 2.1E-52 4.6E-57 351.0 25.0 209 18-241 1-211 (213)
135 TIGR03005 ectoine_ehuA ectoine 100.0 8.1E-53 1.7E-57 362.0 22.9 218 18-241 1-229 (252)
136 cd03252 ABCC_Hemolysin The ABC 100.0 1E-52 2.3E-57 358.0 22.7 215 18-241 1-218 (237)
137 PRK10771 thiQ thiamine transpo 100.0 3.2E-52 6.8E-57 354.2 25.5 210 17-241 1-212 (232)
138 TIGR03410 urea_trans_UrtE urea 100.0 6.9E-53 1.5E-57 357.6 21.2 211 18-241 1-214 (230)
139 cd03297 ABC_ModC_molybdenum_tr 100.0 1.7E-52 3.6E-57 351.7 23.0 210 18-240 2-213 (214)
140 PRK10744 pstB phosphate transp 100.0 3.4E-52 7.3E-57 359.8 25.2 220 14-241 10-237 (260)
141 PRK14269 phosphate ABC transpo 100.0 2.7E-52 5.9E-57 357.6 24.1 217 16-241 1-223 (246)
142 TIGR02142 modC_ABC molybdenum 100.0 3.9E-52 8.6E-57 374.0 25.9 209 22-241 4-214 (354)
143 PRK09984 phosphonate/organopho 100.0 2.7E-52 5.9E-57 360.7 23.9 222 16-241 3-235 (262)
144 PRK13642 cbiO cobalt transport 100.0 3.3E-52 7.2E-57 363.1 24.3 216 17-241 4-222 (277)
145 PRK13549 xylose transporter AT 100.0 2.3E-52 5E-57 391.7 24.8 221 15-242 3-226 (506)
146 TIGR03873 F420-0_ABC_ATP propo 100.0 3.2E-52 7E-57 359.1 23.1 216 18-241 2-219 (256)
147 PRK10762 D-ribose transporter 100.0 3.4E-52 7.3E-57 390.2 25.2 219 16-241 3-223 (501)
148 PRK14248 phosphate ABC transpo 100.0 7E-52 1.5E-56 359.3 25.3 220 14-241 18-245 (268)
149 PRK14239 phosphate transporter 100.0 7.5E-52 1.6E-56 355.7 25.2 220 14-241 2-229 (252)
150 TIGR01978 sufC FeS assembly AT 100.0 4E-52 8.6E-57 355.4 23.3 218 18-241 1-227 (243)
151 cd03251 ABCC_MsbA MsbA is an e 100.0 3.3E-52 7.2E-57 354.1 22.3 215 18-241 1-218 (234)
152 PRK14274 phosphate ABC transpo 100.0 8.6E-52 1.9E-56 357.0 25.0 221 13-241 8-236 (259)
153 PRK14245 phosphate ABC transpo 100.0 9.5E-52 2.1E-56 354.9 25.0 218 16-241 2-227 (250)
154 PRK14256 phosphate ABC transpo 100.0 1.4E-51 3E-56 354.3 25.9 218 17-241 4-229 (252)
155 TIGR03740 galliderm_ABC gallid 100.0 6.2E-52 1.3E-56 350.3 23.1 206 18-242 1-207 (223)
156 PRK14241 phosphate transporter 100.0 9.5E-52 2.1E-56 356.6 24.7 218 17-241 4-235 (258)
157 COG1123 ATPase components of v 100.0 2.9E-52 6.2E-57 383.7 22.5 225 16-242 4-238 (539)
158 PRK09700 D-allose transporter 100.0 5.9E-52 1.3E-56 389.3 25.1 220 15-241 3-227 (510)
159 TIGR02323 CP_lyasePhnK phospho 100.0 5.8E-52 1.3E-56 356.8 22.6 222 16-241 2-231 (253)
160 cd03248 ABCC_TAP TAP, the Tran 100.0 3.9E-52 8.5E-57 352.1 21.2 215 14-237 8-226 (226)
161 PRK14270 phosphate ABC transpo 100.0 1.4E-51 3E-56 354.1 24.8 219 15-241 2-228 (251)
162 cd03245 ABCC_bacteriocin_expor 100.0 5.1E-52 1.1E-56 349.9 21.6 206 18-240 3-219 (220)
163 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-51 2.4E-56 387.3 26.3 213 15-241 9-222 (510)
164 PRK14251 phosphate ABC transpo 100.0 1.4E-51 3.1E-56 353.9 24.7 218 16-241 3-228 (251)
165 PRK14237 phosphate transporter 100.0 2.5E-51 5.5E-56 355.7 26.1 221 13-241 16-244 (267)
166 PRK14259 phosphate ABC transpo 100.0 1.3E-51 2.8E-56 357.9 24.1 211 14-234 10-228 (269)
167 PRK11288 araG L-arabinose tran 100.0 1.2E-51 2.6E-56 386.4 25.6 218 16-240 3-221 (501)
168 PRK13547 hmuV hemin importer A 100.0 1.1E-51 2.4E-56 358.8 23.2 217 17-241 1-237 (272)
169 cd03267 ABC_NatA_like Similar 100.0 1.1E-51 2.4E-56 351.9 22.7 200 32-240 34-235 (236)
170 PRK14262 phosphate ABC transpo 100.0 2.3E-51 4.9E-56 352.5 24.8 218 16-241 2-227 (250)
171 PRK14254 phosphate ABC transpo 100.0 3.5E-51 7.6E-56 357.9 26.4 218 14-241 36-262 (285)
172 cd03234 ABCG_White The White s 100.0 1.1E-51 2.3E-56 349.6 22.4 215 17-240 3-225 (226)
173 cd03300 ABC_PotA_N PotA is an 100.0 2.9E-51 6.2E-56 348.4 24.9 211 18-241 1-213 (232)
174 PRK14240 phosphate transporter 100.0 3.1E-51 6.7E-56 351.6 25.2 217 17-241 3-227 (250)
175 COG4152 ABC-type uncharacteriz 100.0 1.6E-52 3.5E-57 348.1 16.2 212 16-242 1-213 (300)
176 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-51 2.6E-56 351.7 22.0 215 18-241 1-219 (238)
177 PRK14272 phosphate ABC transpo 100.0 3.7E-51 7.9E-56 351.5 25.0 218 17-241 4-229 (252)
178 PRK14249 phosphate ABC transpo 100.0 4.9E-51 1.1E-55 350.7 25.7 218 16-241 3-228 (251)
179 PRK14253 phosphate ABC transpo 100.0 3.4E-51 7.4E-56 351.2 24.6 217 16-241 2-226 (249)
180 PRK14275 phosphate ABC transpo 100.0 4.5E-51 9.7E-56 357.5 25.7 220 14-241 36-263 (286)
181 PRK14271 phosphate ABC transpo 100.0 5.7E-51 1.2E-55 355.1 26.3 218 15-241 19-244 (276)
182 PRK10247 putative ABC transpor 100.0 9.6E-52 2.1E-56 349.9 20.8 214 14-241 4-220 (225)
183 PRK10261 glutathione transport 100.0 1.3E-51 2.9E-56 394.7 24.4 224 15-241 311-546 (623)
184 cd03299 ABC_ModC_like Archeal 100.0 4.6E-51 9.9E-56 347.9 24.9 210 18-241 1-212 (235)
185 PRK10419 nikE nickel transport 100.0 2.6E-51 5.7E-56 355.8 23.5 223 16-241 2-234 (268)
186 PRK14238 phosphate transporter 100.0 4.4E-51 9.5E-56 355.0 24.7 219 14-241 21-248 (271)
187 cd03254 ABCC_Glucan_exporter_l 100.0 2.7E-51 5.8E-56 347.5 22.6 214 18-241 3-219 (229)
188 TIGR00968 3a0106s01 sulfate AB 100.0 6.9E-51 1.5E-55 347.2 25.0 211 18-241 1-213 (237)
189 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-51 4.9E-56 346.3 21.4 214 18-237 2-219 (220)
190 PRK15056 manganese/iron transp 100.0 6.4E-51 1.4E-55 354.1 24.8 218 14-241 3-223 (272)
191 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-51 2.7E-56 344.1 19.1 205 20-232 1-206 (206)
192 PRK14261 phosphate ABC transpo 100.0 1.2E-50 2.7E-55 348.6 25.5 219 15-241 4-230 (253)
193 PRK14244 phosphate ABC transpo 100.0 7.5E-51 1.6E-55 349.6 24.1 218 17-241 5-230 (251)
194 PRK15134 microcin C ABC transp 100.0 2.2E-51 4.7E-56 387.0 22.7 226 14-241 2-239 (529)
195 PRK14265 phosphate ABC transpo 100.0 1.4E-50 3.1E-55 352.3 26.0 219 13-241 16-251 (274)
196 PRK14257 phosphate ABC transpo 100.0 1.2E-50 2.6E-55 360.8 26.0 222 15-242 78-307 (329)
197 PRK14236 phosphate transporter 100.0 1.3E-50 2.9E-55 352.1 25.7 219 15-241 23-249 (272)
198 CHL00131 ycf16 sulfate ABC tra 100.0 1.9E-50 4.2E-55 347.0 26.4 223 13-241 3-234 (252)
199 PRK14255 phosphate ABC transpo 100.0 1E-50 2.3E-55 348.8 24.6 219 15-241 3-229 (252)
200 TIGR02633 xylG D-xylose ABC tr 100.0 7.4E-51 1.6E-55 381.0 25.0 219 17-241 1-223 (500)
201 PRK14243 phosphate transporter 100.0 1.5E-50 3.3E-55 350.3 25.1 217 15-241 8-241 (264)
202 COG4525 TauB ABC-type taurine 100.0 4.1E-51 8.9E-56 329.9 20.0 211 16-240 2-216 (259)
203 cd03244 ABCC_MRP_domain2 Domai 100.0 3.1E-51 6.8E-56 345.3 20.1 206 18-241 3-219 (221)
204 PRK10982 galactose/methyl gala 100.0 5.4E-51 1.2E-55 381.2 23.7 216 20-242 1-217 (491)
205 COG1129 MglA ABC-type sugar tr 100.0 7E-51 1.5E-55 372.2 23.6 223 13-242 4-228 (500)
206 cd03253 ABCC_ATM1_transporter 100.0 8.6E-51 1.9E-55 345.8 22.6 214 18-241 1-217 (236)
207 PRK10261 glutathione transport 100.0 3.1E-51 6.7E-56 392.2 22.1 225 15-241 10-251 (623)
208 PRK10418 nikD nickel transport 100.0 2.3E-50 5E-55 347.2 25.3 211 17-241 4-223 (254)
209 PRK14252 phosphate ABC transpo 100.0 3.1E-50 6.7E-55 348.5 26.1 227 9-241 8-242 (265)
210 PRK14260 phosphate ABC transpo 100.0 1.7E-50 3.7E-55 349.0 24.4 218 16-241 6-236 (259)
211 TIGR02324 CP_lyasePhnL phospho 100.0 5.9E-51 1.3E-55 344.4 20.9 213 17-233 1-223 (224)
212 PRK13543 cytochrome c biogenes 100.0 1.4E-50 3.1E-55 340.2 23.1 204 14-234 8-212 (214)
213 PRK13549 xylose transporter AT 100.0 4.8E-51 1E-55 382.8 22.3 225 14-241 256-487 (506)
214 COG4598 HisP ABC-type histidin 100.0 4.7E-52 1E-56 331.6 13.1 223 15-244 4-236 (256)
215 PRK13538 cytochrome c biogenes 100.0 7.3E-51 1.6E-55 339.6 20.8 201 17-232 1-202 (204)
216 PRK14246 phosphate ABC transpo 100.0 3.7E-50 8.1E-55 346.7 24.8 223 14-241 7-234 (257)
217 TIGR01184 ntrCD nitrate transp 100.0 1.5E-50 3.2E-55 343.7 21.9 195 35-241 1-197 (230)
218 COG2274 SunT ABC-type bacterio 100.0 5.4E-51 1.2E-55 391.0 20.9 218 17-242 471-690 (709)
219 PRK15134 microcin C ABC transp 100.0 8E-51 1.7E-55 383.1 21.6 225 14-241 272-508 (529)
220 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-50 2.6E-55 379.6 22.2 224 15-241 255-485 (500)
221 TIGR03269 met_CoM_red_A2 methy 100.0 3.8E-50 8.1E-55 377.9 25.1 222 14-241 276-510 (520)
222 PRK14263 phosphate ABC transpo 100.0 1.4E-49 3.1E-54 343.7 26.5 218 14-241 5-238 (261)
223 PRK11174 cysteine/glutathione 100.0 3E-50 6.5E-55 383.5 24.3 215 17-241 349-565 (588)
224 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.1E-50 6.7E-55 336.3 21.4 201 16-241 5-205 (207)
225 PRK09700 D-allose transporter 100.0 2.4E-50 5.1E-55 378.4 22.8 219 15-241 263-491 (510)
226 PRK10938 putative molybdenum t 100.0 1.9E-50 4.2E-55 377.3 21.9 207 17-241 3-217 (490)
227 cd03231 ABC_CcmA_heme_exporter 100.0 4.6E-50 9.9E-55 334.1 21.8 197 18-232 1-198 (201)
228 TIGR03269 met_CoM_red_A2 methy 100.0 3.7E-50 8.1E-55 377.9 23.8 218 18-241 1-251 (520)
229 PRK14266 phosphate ABC transpo 100.0 1.2E-49 2.7E-54 341.7 24.6 218 16-241 2-227 (250)
230 PRK09580 sufC cysteine desulfu 100.0 1.7E-49 3.7E-54 340.2 25.0 219 17-241 1-228 (248)
231 PRK14258 phosphate ABC transpo 100.0 1.9E-49 4E-54 342.9 25.4 218 16-241 6-238 (261)
232 cd03215 ABC_Carb_Monos_II This 100.0 4.4E-50 9.6E-55 329.3 19.8 178 15-237 2-182 (182)
233 PRK14264 phosphate ABC transpo 100.0 2.3E-49 5E-54 349.6 25.2 221 15-241 43-282 (305)
234 PRK09544 znuC high-affinity zi 100.0 1.6E-49 3.5E-54 341.5 23.6 196 16-241 3-202 (251)
235 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-49 2.8E-54 324.1 21.5 172 18-237 1-173 (173)
236 cd03288 ABCC_SUR2 The SUR doma 100.0 1.8E-49 3.8E-54 342.4 23.5 217 15-241 17-236 (257)
237 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.5E-50 7.5E-55 349.6 19.2 206 18-242 3-219 (275)
238 TIGR02770 nickel_nikD nickel i 100.0 1.2E-49 2.5E-54 338.1 21.8 199 34-241 1-208 (230)
239 PRK03695 vitamin B12-transport 100.0 1.1E-49 2.4E-54 342.0 21.9 206 19-241 2-215 (248)
240 PRK11176 lipid transporter ATP 100.0 6.8E-50 1.5E-54 380.6 22.5 217 17-241 341-560 (582)
241 cd03233 ABC_PDR_domain1 The pl 100.0 2.4E-49 5.2E-54 330.1 22.9 191 17-240 3-201 (202)
242 cd03247 ABCC_cytochrome_bd The 100.0 6.7E-50 1.4E-54 327.1 18.9 177 18-240 1-177 (178)
243 cd03246 ABCC_Protease_Secretio 100.0 1.1E-49 2.3E-54 324.5 20.0 172 18-237 1-173 (173)
244 cd03229 ABC_Class3 This class 100.0 1.3E-49 2.9E-54 325.3 20.5 176 18-236 1-178 (178)
245 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-49 2.8E-54 385.2 23.9 205 17-241 451-666 (686)
246 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.4E-49 7.4E-54 334.2 23.0 200 18-240 23-223 (224)
247 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.4E-50 2E-54 387.5 22.4 214 17-241 477-693 (710)
248 COG4988 CydD ABC-type transpor 100.0 1.3E-49 2.8E-54 365.3 21.7 208 17-241 320-536 (559)
249 COG3845 ABC-type uncharacteriz 100.0 1.3E-49 2.9E-54 358.2 21.2 220 15-241 2-222 (501)
250 COG4559 ABC-type hemin transpo 100.0 7E-50 1.5E-54 326.3 17.5 218 17-243 1-225 (259)
251 COG4604 CeuD ABC-type enteroch 100.0 4E-51 8.6E-56 330.3 9.5 217 17-242 1-219 (252)
252 cd03214 ABC_Iron-Siderophores_ 100.0 8.9E-50 1.9E-54 326.9 17.3 177 19-240 1-179 (180)
253 COG4161 ArtP ABC-type arginine 100.0 5.2E-50 1.1E-54 315.2 15.0 220 17-242 2-224 (242)
254 TIGR03375 type_I_sec_LssB type 100.0 2.6E-49 5.7E-54 383.5 23.3 217 17-241 463-681 (694)
255 PRK13539 cytochrome c biogenes 100.0 3.3E-49 7.3E-54 330.3 20.6 198 17-234 2-200 (207)
256 cd03228 ABCC_MRP_Like The MRP 100.0 2.8E-49 6E-54 321.5 19.2 171 18-236 1-171 (171)
257 PRK11160 cysteine/glutathione 100.0 3.8E-49 8.3E-54 374.9 23.1 210 16-241 337-555 (574)
258 cd03213 ABCG_EPDR ABCG transpo 100.0 7.3E-49 1.6E-53 325.3 21.5 183 17-240 3-193 (194)
259 PRK13540 cytochrome c biogenes 100.0 3.3E-49 7.2E-54 328.6 19.4 196 17-230 1-197 (200)
260 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-48 3.2E-53 325.4 23.3 196 18-236 1-204 (204)
261 PRK10790 putative multidrug tr 100.0 6.5E-49 1.4E-53 374.6 23.8 214 17-241 340-556 (592)
262 PRK10762 D-ribose transporter 100.0 4.5E-49 9.7E-54 369.1 22.3 217 15-242 255-478 (501)
263 TIGR01189 ccmA heme ABC export 100.0 4.7E-49 1E-53 327.1 19.9 196 18-231 1-197 (198)
264 COG1132 MdlB ABC-type multidru 100.0 5E-49 1.1E-53 373.7 22.0 217 17-242 328-546 (567)
265 PRK11288 araG L-arabinose tran 100.0 5.9E-49 1.3E-53 368.3 22.0 218 15-242 255-479 (501)
266 KOG0058 Peptide exporter, ABC 100.0 3.2E-49 6.8E-54 369.2 19.8 217 17-241 465-684 (716)
267 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-48 2.7E-53 372.5 24.1 216 17-241 334-551 (588)
268 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-48 2.4E-53 323.6 20.5 182 17-240 3-191 (192)
269 TIGR01166 cbiO cobalt transpor 100.0 4.5E-49 9.8E-54 325.1 18.1 184 32-221 5-189 (190)
270 PRK15439 autoinducer 2 ABC tra 100.0 7.9E-49 1.7E-53 368.1 21.6 217 14-241 265-485 (510)
271 cd03290 ABCC_SUR1_N The SUR do 100.0 2.3E-48 5E-53 327.4 22.1 204 19-236 2-218 (218)
272 TIGR01257 rim_protein retinal- 100.0 1.4E-48 3E-53 403.2 25.0 217 16-242 927-1143(2272)
273 TIGR01842 type_I_sec_PrtD type 100.0 2.5E-48 5.3E-53 367.4 24.4 217 17-242 316-536 (544)
274 TIGR00958 3a01208 Conjugate Tr 100.0 8.8E-49 1.9E-53 380.4 21.9 215 17-242 478-696 (711)
275 TIGR02203 MsbA_lipidA lipid A 100.0 1.4E-48 3E-53 370.7 22.2 217 17-241 330-549 (571)
276 KOG0055 Multidrug/pheromone ex 100.0 7.8E-49 1.7E-53 384.1 20.7 218 17-242 350-570 (1228)
277 COG4608 AppF ABC-type oligopep 100.0 1.6E-48 3.4E-53 330.9 19.7 183 15-242 2-193 (268)
278 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.6E-48 7.8E-53 322.5 21.5 183 18-241 1-187 (200)
279 COG4987 CydC ABC-type transpor 100.0 5E-49 1.1E-53 357.3 17.7 210 17-242 336-555 (573)
280 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-48 4.4E-53 377.2 23.0 217 17-241 455-673 (694)
281 PRK15064 ABC transporter ATP-b 100.0 3.5E-48 7.5E-53 365.3 23.7 203 17-239 1-232 (530)
282 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-48 3.9E-53 378.4 22.4 215 17-241 473-690 (708)
283 TIGR01257 rim_protein retinal- 100.0 2.8E-48 6.1E-53 400.9 24.9 218 15-242 1935-2153(2272)
284 PRK11819 putative ABC transpor 100.0 8.2E-48 1.8E-52 364.5 25.8 205 14-239 3-240 (556)
285 PRK10982 galactose/methyl gala 100.0 1.9E-48 4E-53 364.1 20.6 219 15-241 248-473 (491)
286 TIGR02204 MsbA_rel ABC transpo 100.0 2.8E-48 6E-53 369.0 22.2 217 17-242 337-557 (576)
287 TIGR01192 chvA glucan exporter 100.0 5.5E-48 1.2E-52 367.7 24.1 215 17-241 334-551 (585)
288 cd03216 ABC_Carb_Monos_I This 100.0 5.7E-48 1.2E-52 311.6 20.6 161 18-239 1-162 (163)
289 COG4148 ModC ABC-type molybdat 100.0 4.9E-49 1.1E-53 332.8 14.8 196 36-242 15-212 (352)
290 PRK10938 putative molybdenum t 100.0 3.3E-48 7.2E-53 362.3 21.5 224 14-242 257-486 (490)
291 PRK10789 putative multidrug tr 100.0 4.6E-48 9.9E-53 367.3 22.5 213 17-242 313-532 (569)
292 cd03223 ABCD_peroxisomal_ALDP 100.0 1.4E-47 3E-52 310.2 21.7 164 18-236 1-164 (166)
293 COG4619 ABC-type uncharacteriz 100.0 9.3E-50 2E-54 315.0 8.6 210 17-239 3-214 (223)
294 COG4172 ABC-type uncharacteriz 100.0 1.1E-47 2.3E-52 338.3 21.9 226 14-242 273-510 (534)
295 PRK15064 ABC transporter ATP-b 100.0 1.7E-47 3.8E-52 360.6 23.6 198 15-239 317-515 (530)
296 TIGR02857 CydD thiol reductant 100.0 8.2E-48 1.8E-52 362.6 21.1 207 17-232 320-529 (529)
297 PRK13546 teichoic acids export 100.0 8E-47 1.7E-51 327.0 25.4 203 17-241 4-225 (264)
298 TIGR03771 anch_rpt_ABC anchore 100.0 3.1E-47 6.8E-52 321.9 21.9 191 40-241 1-194 (223)
299 PRK13545 tagH teichoic acids e 100.0 1.1E-46 2.4E-51 347.9 26.4 206 14-241 18-225 (549)
300 COG4172 ABC-type uncharacteriz 100.0 1.4E-47 3E-52 337.6 18.9 228 13-242 2-241 (534)
301 PRK13541 cytochrome c biogenes 100.0 4.2E-47 9E-52 314.8 20.5 191 17-229 1-192 (195)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-46 3.1E-51 355.9 26.4 202 14-239 319-521 (552)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-46 2.9E-51 356.1 25.6 203 16-239 3-238 (552)
304 KOG0057 Mitochondrial Fe/S clu 100.0 3.6E-47 7.9E-52 345.5 19.8 216 17-242 351-568 (591)
305 TIGR02868 CydC thiol reductant 100.0 2.1E-47 4.6E-52 359.8 18.8 185 17-219 334-529 (529)
306 PRK10535 macrolide transporter 100.0 1.1E-46 2.5E-51 362.0 23.7 221 16-242 3-226 (648)
307 PRK11819 putative ABC transpor 100.0 3.3E-46 7.2E-51 353.6 26.5 201 15-239 322-523 (556)
308 PTZ00265 multidrug resistance 100.0 4.4E-47 9.5E-52 389.1 21.2 217 17-242 1165-1445(1466)
309 COG1119 ModF ABC-type molybden 100.0 2.8E-47 6.1E-52 317.7 15.3 223 14-242 28-256 (257)
310 PRK11147 ABC transporter ATPas 100.0 4.1E-46 8.8E-51 357.7 25.5 203 14-240 316-519 (635)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-46 4.5E-51 321.3 20.9 186 25-236 1-193 (246)
312 PLN03211 ABC transporter G-25; 100.0 1.4E-46 3E-51 361.0 21.8 212 20-242 71-290 (659)
313 TIGR01187 potA spermidine/putr 100.0 1.7E-46 3.6E-51 334.0 20.7 181 50-241 1-183 (325)
314 COG4674 Uncharacterized ABC-ty 100.0 2.5E-47 5.4E-52 307.8 13.9 221 16-243 4-230 (249)
315 PRK10636 putative ABC transpor 100.0 5.3E-46 1.2E-50 356.7 24.5 198 14-239 309-507 (638)
316 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.8E-45 6.1E-50 319.9 26.5 202 14-241 36-240 (282)
317 PRK10522 multidrug transporter 100.0 5.5E-46 1.2E-50 351.5 22.2 205 17-243 322-533 (547)
318 PRK13409 putative ATPase RIL; 100.0 1.1E-45 2.4E-50 350.9 23.5 196 14-240 337-534 (590)
319 PLN03232 ABC transporter C fam 100.0 4.3E-46 9.3E-51 383.9 22.0 208 17-242 1234-1452(1495)
320 PLN03130 ABC transporter C fam 100.0 9.8E-46 2.1E-50 382.2 23.4 208 17-242 1237-1455(1622)
321 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-45 2.8E-50 349.5 21.4 206 16-241 336-552 (555)
322 PRK10636 putative ABC transpor 100.0 3E-45 6.4E-50 351.6 23.3 202 17-239 1-226 (638)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-45 4.3E-50 316.7 18.6 203 21-239 4-218 (255)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.5E-45 1.4E-49 288.1 20.1 144 18-236 1-144 (144)
325 COG1101 PhnK ABC-type uncharac 100.0 7.6E-46 1.6E-50 303.3 14.4 220 17-241 1-231 (263)
326 KOG0055 Multidrug/pheromone ex 100.0 2.2E-45 4.7E-50 360.0 20.2 217 17-241 987-1206(1228)
327 PLN03073 ABC transporter F fam 100.0 9.7E-45 2.1E-49 350.4 23.6 199 15-239 506-704 (718)
328 PRK15177 Vi polysaccharide exp 100.0 4.2E-45 9E-50 307.0 18.4 184 34-242 2-186 (213)
329 PTZ00243 ABC transporter; Prov 100.0 3.5E-45 7.5E-50 377.4 21.3 209 17-242 1308-1527(1560)
330 TIGR00957 MRP_assoc_pro multi 100.0 8.6E-45 1.9E-49 374.7 22.3 208 17-242 1284-1502(1522)
331 PRK11147 ABC transporter ATPas 100.0 4.8E-44 1E-48 343.4 24.6 202 16-240 2-234 (635)
332 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-44 7.4E-49 367.2 24.6 217 16-242 758-987 (1394)
333 PTZ00265 multidrug resistance 100.0 1.8E-44 4E-49 369.9 21.5 213 17-236 382-656 (1466)
334 COG0396 sufC Cysteine desulfur 100.0 1.2E-43 2.6E-48 293.1 20.6 223 16-243 2-229 (251)
335 TIGR01271 CFTR_protein cystic 100.0 3E-44 6.5E-49 369.9 20.8 208 17-242 1217-1434(1490)
336 TIGR00955 3a01204 The Eye Pigm 100.0 5.5E-44 1.2E-48 341.9 20.0 203 31-242 37-250 (617)
337 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-43 4.1E-48 340.2 23.1 196 15-234 449-653 (659)
338 COG4167 SapF ABC-type antimicr 100.0 9.9E-44 2.1E-48 284.7 17.2 223 15-243 2-234 (267)
339 COG4586 ABC-type uncharacteriz 100.0 1.2E-44 2.5E-49 305.3 11.6 217 17-242 3-240 (325)
340 COG4618 ArpD ABC-type protease 100.0 2.3E-43 5E-48 318.2 20.5 215 17-239 334-551 (580)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 3.5E-43 7.7E-48 286.8 19.2 146 21-238 4-151 (177)
342 COG0488 Uup ATPase components 100.0 3.4E-43 7.4E-48 327.7 21.6 203 16-240 2-231 (530)
343 COG4136 ABC-type uncharacteriz 100.0 2.7E-43 5.8E-48 274.0 15.7 202 17-233 2-208 (213)
344 PLN03140 ABC transporter G fam 100.0 1E-42 2.2E-47 356.1 24.3 217 17-242 867-1104(1470)
345 COG4107 PhnK ABC-type phosphon 100.0 1.6E-43 3.5E-48 281.5 14.0 220 13-241 2-234 (258)
346 PRK13409 putative ATPase RIL; 100.0 6.5E-43 1.4E-47 332.0 18.5 207 12-235 60-287 (590)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.9E-42 6.3E-47 276.3 19.2 155 20-236 2-157 (157)
348 cd03238 ABC_UvrA The excision 100.0 3.6E-42 7.9E-47 280.6 18.9 157 31-237 7-166 (176)
349 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-41 3.7E-46 350.3 24.8 198 17-241 636-843 (1522)
350 COG1134 TagH ABC-type polysacc 100.0 1.6E-41 3.5E-46 283.4 19.7 191 32-243 40-231 (249)
351 PLN03073 ABC transporter F fam 100.0 2.7E-42 5.8E-47 333.5 17.1 220 14-239 174-421 (718)
352 PLN03232 ABC transporter C fam 100.0 1.5E-41 3.3E-46 350.2 23.0 196 17-241 614-821 (1495)
353 PLN03130 ABC transporter C fam 100.0 2.7E-41 5.9E-46 349.2 24.0 195 16-241 613-821 (1622)
354 TIGR00956 3a01205 Pleiotropic 100.0 2.6E-41 5.6E-46 346.1 21.3 204 32-242 74-294 (1394)
355 KOG0056 Heavy metal exporter H 100.0 4.6E-42 9.9E-47 308.4 13.4 215 17-241 537-754 (790)
356 TIGR01271 CFTR_protein cystic 100.0 2.8E-40 6E-45 340.6 26.6 187 33-241 440-629 (1490)
357 COG4133 CcmA ABC-type transpor 100.0 5E-41 1.1E-45 269.8 13.0 192 16-222 1-193 (209)
358 PLN03140 ABC transporter G fam 100.0 2.7E-40 5.8E-45 338.4 19.0 202 32-241 178-420 (1470)
359 KOG0059 Lipid exporter ABCA1 a 100.0 2.7E-40 5.8E-45 326.5 17.6 218 15-241 562-780 (885)
360 COG0488 Uup ATPase components 100.0 2.3E-39 4.9E-44 302.1 22.6 198 13-238 317-514 (530)
361 PTZ00243 ABC transporter; Prov 100.0 1.7E-39 3.7E-44 335.3 24.0 187 32-241 673-863 (1560)
362 cd03270 ABC_UvrA_I The excisio 100.0 8.4E-39 1.8E-43 271.0 20.9 199 31-241 7-226 (226)
363 COG4778 PhnL ABC-type phosphon 100.0 2E-40 4.3E-45 262.7 10.0 215 16-234 3-227 (235)
364 COG5265 ATM1 ABC-type transpor 100.0 4.4E-40 9.6E-45 291.4 13.0 215 18-241 263-479 (497)
365 KOG0061 Transporter, ABC super 100.0 4.1E-39 8.8E-44 306.8 20.1 217 17-242 25-254 (613)
366 KOG0054 Multidrug resistance-a 100.0 2.4E-37 5.2E-42 309.0 18.9 217 17-242 1138-1356(1381)
367 cd03278 ABC_SMC_barmotin Barmo 100.0 1.4E-37 3.1E-42 258.3 13.9 165 35-234 12-190 (197)
368 KOG0054 Multidrug resistance-a 100.0 3.1E-36 6.8E-41 301.1 21.8 200 13-242 514-725 (1381)
369 PF00005 ABC_tran: ABC transpo 100.0 3.4E-37 7.3E-42 240.8 8.3 134 35-189 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.3E-35 2.8E-40 255.6 18.5 198 34-242 10-260 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.1E-35 2.4E-40 272.4 19.0 220 13-241 259-483 (500)
372 cd03273 ABC_SMC2_euk Eukaryoti 100.0 2.7E-35 5.9E-40 253.2 12.7 185 45-233 25-242 (251)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.5E-34 3.2E-39 242.9 15.0 194 17-237 5-211 (213)
374 COG4138 BtuD ABC-type cobalami 100.0 6.4E-36 1.4E-40 238.1 4.6 206 16-242 2-215 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 9.8E-35 2.1E-39 248.1 11.5 201 18-233 4-234 (243)
376 KOG0927 Predicted transporter 100.0 3E-34 6.5E-39 260.7 10.8 202 13-240 385-587 (614)
377 cd03274 ABC_SMC4_euk Eukaryoti 100.0 4.9E-35 1.1E-39 245.7 4.2 188 17-234 5-204 (212)
378 cd03240 ABC_Rad50 The catalyti 100.0 6.6E-33 1.4E-37 231.5 14.6 166 38-235 16-198 (204)
379 COG4170 SapD ABC-type antimicr 100.0 2.6E-33 5.7E-38 229.3 10.9 225 16-240 2-240 (330)
380 COG3845 ABC-type uncharacteriz 100.0 2.2E-31 4.8E-36 240.4 20.3 225 13-241 253-485 (501)
381 COG4178 ABC-type uncharacteriz 100.0 4.9E-31 1.1E-35 246.1 20.2 194 15-234 390-588 (604)
382 PRK00635 excinuclease ABC subu 100.0 4.2E-31 9.2E-36 270.2 21.1 217 16-241 599-899 (1809)
383 COG4615 PvdE ABC-type sideroph 100.0 3E-32 6.6E-37 240.1 7.1 203 17-241 322-530 (546)
384 KOG0927 Predicted transporter 100.0 1.4E-30 3.1E-35 236.8 16.5 216 17-241 75-301 (614)
385 PRK00349 uvrA excinuclease ABC 100.0 6.4E-30 1.4E-34 251.8 21.4 102 140-242 810-921 (943)
386 KOG0065 Pleiotropic drug resis 100.0 1.2E-31 2.6E-36 263.9 8.8 214 18-241 788-1014(1391)
387 COG1245 Predicted ATPase, RNas 100.0 3.5E-30 7.5E-35 230.4 16.3 188 16-233 341-530 (591)
388 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.8E-30 4E-35 222.7 11.9 200 18-234 4-233 (247)
389 KOG0062 ATPase component of AB 100.0 7.1E-30 1.5E-34 231.1 15.4 200 13-239 358-559 (582)
390 cd03276 ABC_SMC6_euk Eukaryoti 100.0 1.3E-29 2.8E-34 210.7 14.9 173 35-236 12-192 (198)
391 KOG0066 eIF2-interacting prote 100.0 6.8E-30 1.5E-34 227.8 13.0 197 13-237 582-779 (807)
392 TIGR00630 uvra excinuclease AB 100.0 2.9E-28 6.4E-33 239.6 21.6 102 140-242 808-919 (924)
393 KOG0060 Long-chain acyl-CoA tr 100.0 2.2E-28 4.8E-33 224.0 19.1 203 13-234 429-641 (659)
394 KOG0062 ATPase component of AB 100.0 1.2E-29 2.5E-34 229.7 9.7 194 17-237 80-273 (582)
395 KOG2355 Predicted ABC-type tra 100.0 1.7E-27 3.8E-32 194.3 14.7 209 15-239 11-228 (291)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 9.6E-27 2.1E-31 193.7 11.3 144 35-240 17-171 (200)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.3E-26 5E-31 193.2 11.8 190 35-237 14-212 (213)
398 KOG0064 Peroxisomal long-chain 99.9 3.4E-26 7.4E-31 207.7 9.5 184 17-223 481-673 (728)
399 COG1245 Predicted ATPase, RNas 99.9 8.3E-25 1.8E-29 196.1 11.2 204 12-233 61-287 (591)
400 cd03239 ABC_SMC_head The struc 99.9 5.7E-24 1.2E-28 173.9 15.0 73 161-234 95-172 (178)
401 COG2401 ABC-type ATPase fused 99.9 3.3E-24 7.2E-29 190.4 14.3 184 32-241 396-591 (593)
402 cd03283 ABC_MutS-like MutS-lik 99.9 6.3E-24 1.4E-28 176.6 10.5 145 32-231 14-162 (199)
403 cd03241 ABC_RecN RecN ATPase i 99.9 3.3E-23 7.2E-28 180.5 15.3 77 159-236 169-249 (276)
404 cd03227 ABC_Class2 ABC-type Cl 99.9 4.7E-23 1E-27 166.0 12.9 139 35-234 11-155 (162)
405 KOG0065 Pleiotropic drug resis 99.9 2.8E-23 6E-28 205.2 13.6 203 32-242 128-345 (1391)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.9 7.6E-24 1.6E-28 179.0 6.6 150 32-241 17-174 (222)
407 cd03243 ABC_MutS_homologs The 99.9 1.2E-22 2.6E-27 169.2 7.9 151 35-241 19-172 (202)
408 PRK00635 excinuclease ABC subu 99.9 3.2E-21 6.9E-26 198.3 19.6 103 139-242 1678-1790(1809)
409 KOG0066 eIF2-interacting prote 99.9 1.1E-22 2.4E-27 181.9 7.1 214 17-238 264-488 (807)
410 cd03242 ABC_RecF RecF is a rec 99.9 1.3E-20 2.9E-25 163.7 14.4 78 157-237 180-269 (270)
411 PRK00349 uvrA excinuclease ABC 99.8 6.9E-21 1.5E-25 188.1 13.5 99 142-241 471-578 (943)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.8 2.6E-21 5.6E-26 161.5 8.7 140 32-226 16-158 (204)
413 COG0178 UvrA Excinuclease ATPa 99.8 5.7E-20 1.2E-24 174.4 18.2 102 140-242 802-913 (935)
414 TIGR00630 uvra excinuclease AB 99.8 1.2E-20 2.5E-25 186.2 14.0 98 143-241 470-576 (924)
415 KOG0063 RNAse L inhibitor, ABC 99.8 6.2E-20 1.3E-24 163.8 12.8 181 25-233 343-531 (592)
416 cd03284 ABC_MutS1 MutS1 homolo 99.8 7.9E-19 1.7E-23 147.8 10.9 146 33-239 19-172 (216)
417 cd03281 ABC_MSH5_euk MutS5 hom 99.8 6.5E-18 1.4E-22 142.0 12.7 135 34-226 18-161 (213)
418 TIGR02858 spore_III_AA stage I 99.8 3E-18 6.5E-23 148.5 10.9 135 46-236 112-259 (270)
419 smart00534 MUTSac ATPase domai 99.8 8.7E-19 1.9E-23 144.1 7.0 73 154-228 55-130 (185)
420 PF02463 SMC_N: RecF/RecN/SMC 99.7 2.7E-18 5.9E-23 144.4 8.3 184 36-233 16-212 (220)
421 TIGR01069 mutS2 MutS2 family p 99.7 4.9E-18 1.1E-22 165.8 7.8 131 37-222 313-448 (771)
422 cd00820 PEPCK_HprK Phosphoenol 99.6 3.2E-16 6.8E-21 117.0 6.0 77 32-122 2-78 (107)
423 TIGR00634 recN DNA repair prot 99.6 8.9E-16 1.9E-20 146.1 10.4 77 159-236 439-519 (563)
424 cd03287 ABC_MSH3_euk MutS3 hom 99.6 2E-15 4.4E-20 127.5 11.0 137 32-223 18-158 (222)
425 PRK00409 recombination and DNA 99.6 2.8E-16 6E-21 153.9 5.9 84 154-239 384-469 (782)
426 TIGR00618 sbcc exonuclease Sbc 99.6 1.5E-15 3.3E-20 153.6 11.4 82 154-235 944-1036(1042)
427 KOG0063 RNAse L inhibitor, ABC 99.6 4.4E-16 9.5E-21 139.3 6.5 173 43-233 98-287 (592)
428 PTZ00132 GTP-binding nuclear p 99.6 3.6E-16 7.7E-21 131.1 5.1 44 164-207 156-204 (215)
429 PRK07721 fliI flagellum-specif 99.6 1.1E-14 2.5E-19 133.8 15.3 177 32-242 146-337 (438)
430 PHA02562 46 endonuclease subun 99.6 1.8E-15 3.8E-20 143.9 8.3 80 156-237 464-555 (562)
431 PRK10869 recombination and rep 99.6 4.5E-15 9.7E-20 140.6 10.8 75 160-235 430-508 (553)
432 cd01128 rho_factor Transcripti 99.6 2.2E-14 4.7E-19 123.1 11.4 76 158-238 127-212 (249)
433 PRK13695 putative NTPase; Prov 99.5 3.3E-15 7.1E-20 121.5 4.5 80 155-239 73-155 (174)
434 PRK08533 flagellar accessory p 99.5 8.8E-14 1.9E-18 118.2 11.9 158 18-233 8-184 (230)
435 cd03286 ABC_MSH6_euk MutS6 hom 99.5 2.8E-13 6E-18 114.1 14.6 140 32-226 17-160 (218)
436 PF13304 AAA_21: AAA domain; P 99.5 7.4E-14 1.6E-18 117.0 10.7 66 157-222 233-302 (303)
437 PRK03918 chromosome segregatio 99.5 4E-14 8.6E-19 141.1 10.0 78 155-233 783-867 (880)
438 PRK01156 chromosome segregatio 99.5 1.4E-13 3.1E-18 137.5 13.5 77 156-233 797-883 (895)
439 PRK10246 exonuclease subunit S 99.5 7.7E-14 1.7E-18 141.0 11.2 80 155-234 944-1032(1047)
440 TIGR00606 rad50 rad50. This fa 99.5 8.4E-14 1.8E-18 143.7 11.6 78 156-233 1195-1289(1311)
441 cd01124 KaiC KaiC is a circadi 99.5 2.2E-13 4.7E-18 111.3 10.7 86 147-233 59-163 (187)
442 TIGR02168 SMC_prok_B chromosom 99.5 9.1E-14 2E-18 141.5 8.3 79 154-233 1083-1165(1179)
443 PRK06793 fliI flagellum-specif 99.4 5.8E-13 1.3E-17 121.9 10.7 165 17-239 130-302 (432)
444 COG3910 Predicted ATPase [Gene 99.4 8.7E-12 1.9E-16 101.1 14.6 82 155-237 124-206 (233)
445 TIGR02169 SMC_prok_A chromosom 99.4 8.9E-13 1.9E-17 134.5 9.3 79 155-234 1069-1151(1164)
446 TIGR03238 dnd_assoc_3 dnd syst 99.4 7.6E-14 1.6E-18 127.9 1.2 68 33-107 20-88 (504)
447 TIGR02788 VirB11 P-type DNA tr 99.4 1.6E-12 3.4E-17 115.2 9.0 135 38-239 137-272 (308)
448 PRK13830 conjugal transfer pro 99.4 1.1E-11 2.5E-16 122.5 15.1 64 176-239 650-724 (818)
449 PRK00064 recF recombination pr 99.4 2.3E-12 5E-17 116.5 8.9 79 157-237 270-359 (361)
450 COG0178 UvrA Excinuclease ATPa 99.4 1.4E-11 3E-16 118.0 14.1 99 143-242 464-571 (935)
451 cd01120 RecA-like_NTPases RecA 99.3 5E-12 1.1E-16 99.9 7.2 64 159-222 66-140 (165)
452 PRK02224 chromosome segregatio 99.3 7.6E-12 1.6E-16 124.9 9.2 78 157-235 778-869 (880)
453 PRK06002 fliI flagellum-specif 99.2 2.4E-11 5.2E-16 111.6 5.7 91 15-107 137-230 (450)
454 PRK06067 flagellar accessory p 99.2 4E-10 8.6E-15 95.8 12.5 75 159-233 99-186 (234)
455 TIGR00611 recf recF protein. A 99.2 1E-10 2.3E-15 105.8 8.3 63 159-223 274-345 (365)
456 cd01125 repA Hexameric Replica 99.1 3.3E-10 7.2E-15 96.6 10.1 135 45-219 1-159 (239)
457 cd01131 PilT Pilus retraction 99.1 3.4E-10 7.3E-15 94.1 9.6 57 170-233 66-122 (198)
458 PRK06995 flhF flagellar biosyn 99.1 3.6E-10 7.7E-15 105.0 7.7 170 34-238 245-430 (484)
459 smart00382 AAA ATPases associa 99.1 8.3E-09 1.8E-13 78.4 14.0 117 44-218 1-125 (148)
460 cd01130 VirB11-like_ATPase Typ 99.0 4E-10 8.7E-15 92.6 6.8 82 34-122 14-96 (186)
461 TIGR01026 fliI_yscN ATPase Fli 99.0 9.8E-10 2.1E-14 101.4 9.7 178 32-242 151-342 (440)
462 PRK13891 conjugal transfer pro 99.0 5.2E-09 1.1E-13 104.2 15.5 54 171-224 680-735 (852)
463 TIGR02655 circ_KaiC circadian 99.0 1.7E-12 3.8E-17 121.5 -8.7 160 41-233 17-190 (484)
464 cd02023 UMPK Uridine monophosp 99.0 2E-10 4.3E-15 95.1 4.4 115 47-195 1-115 (198)
465 PRK14079 recF recombination pr 99.0 1.1E-09 2.4E-14 98.6 8.2 76 159-240 262-346 (349)
466 COG0419 SbcC ATPase involved i 99.0 2.4E-09 5.2E-14 107.4 10.5 78 156-234 811-897 (908)
467 TIGR02680 conserved hypothetic 99.0 1.1E-09 2.5E-14 113.3 7.7 63 155-219 1242-1316(1353)
468 PRK06315 type III secretion sy 99.0 4.8E-10 1E-14 103.1 4.1 169 32-240 152-342 (442)
469 PRK05399 DNA mismatch repair p 98.9 6E-09 1.3E-13 103.6 11.9 135 33-228 596-738 (854)
470 PRK07196 fliI flagellum-specif 98.9 1.8E-09 3.9E-14 99.1 5.6 88 32-121 143-235 (434)
471 PRK08149 ATP synthase SpaL; Va 98.8 2.9E-09 6.3E-14 97.6 5.1 75 32-107 139-216 (428)
472 PLN03210 Resistant to P. syrin 98.8 2.8E-08 6.2E-13 102.0 10.8 44 37-80 199-243 (1153)
473 TIGR02903 spore_lon_C ATP-depe 98.8 3E-08 6.4E-13 95.5 9.6 110 44-205 174-291 (615)
474 PRK09825 idnK D-gluconate kina 98.8 3.2E-09 7E-14 86.6 2.5 69 44-122 2-70 (176)
475 TIGR03881 KaiC_arch_4 KaiC dom 98.8 1.1E-09 2.5E-14 92.5 -0.2 39 41-80 16-56 (229)
476 cd01876 YihA_EngB The YihA (En 98.8 2.1E-08 4.6E-13 79.0 7.0 64 139-206 101-169 (170)
477 PRK13898 type IV secretion sys 98.7 9.9E-07 2.1E-11 87.6 18.4 51 174-224 638-690 (800)
478 PF13558 SbcCD_C: Putative exo 98.7 2.6E-08 5.6E-13 72.4 5.2 51 155-205 27-90 (90)
479 PRK07594 type III secretion sy 98.7 2.3E-08 5E-13 91.9 5.7 63 17-81 129-191 (433)
480 TIGR01420 pilT_fam pilus retra 98.7 3.3E-07 7.2E-12 82.4 12.7 54 170-230 187-240 (343)
481 PF13555 AAA_29: P-loop contai 98.7 2.7E-08 5.8E-13 66.9 4.3 39 35-73 12-51 (62)
482 PRK10078 ribose 1,5-bisphospho 98.7 1.8E-08 4E-13 82.6 4.1 55 45-106 2-56 (186)
483 PRK00454 engB GTP-binding prot 98.7 1.4E-08 3.1E-13 83.2 3.1 64 140-207 127-193 (196)
484 cd01136 ATPase_flagellum-secre 98.7 5.9E-08 1.3E-12 86.3 7.1 57 23-81 49-105 (326)
485 PRK09862 putative ATP-dependen 98.6 2.7E-08 5.8E-13 93.2 4.9 62 20-83 187-248 (506)
486 TIGR00235 udk uridine kinase. 98.6 1.1E-08 2.5E-13 85.3 2.0 29 43-71 4-32 (207)
487 TIGR00767 rho transcription te 98.6 6.2E-08 1.3E-12 87.9 6.6 53 17-70 130-193 (415)
488 TIGR00152 dephospho-CoA kinase 98.6 4.3E-08 9.4E-13 80.5 5.2 70 164-235 61-133 (188)
489 PRK01889 GTPase RsgA; Reviewed 98.6 8.7E-08 1.9E-12 86.6 5.8 78 35-121 185-262 (356)
490 PRK09099 type III secretion sy 98.6 1E-07 2.2E-12 87.9 6.0 49 32-81 151-199 (441)
491 PF00488 MutS_V: MutS domain V 98.6 2.9E-06 6.2E-11 72.4 14.4 48 176-223 120-170 (235)
492 PRK00300 gmk guanylate kinase; 98.5 5.9E-08 1.3E-12 80.5 3.9 28 43-70 3-30 (205)
493 PRK07960 fliI flagellum-specif 98.5 5.6E-08 1.2E-12 89.5 3.8 73 33-107 164-239 (455)
494 PRK14723 flhF flagellar biosyn 98.5 8.9E-07 1.9E-11 86.3 11.5 42 33-74 173-214 (767)
495 cd00009 AAA The AAA+ (ATPases 98.5 5.3E-07 1.1E-11 69.1 8.0 54 166-220 72-131 (151)
496 TIGR02546 III_secr_ATP type II 98.5 1.3E-07 2.7E-12 87.2 5.1 49 32-81 133-181 (422)
497 PRK10416 signal recognition pa 98.5 4.6E-08 9.9E-13 87.0 2.0 78 43-121 112-191 (318)
498 PRK14722 flhF flagellar biosyn 98.5 8.4E-07 1.8E-11 80.3 9.9 38 32-69 124-161 (374)
499 TIGR03498 FliI_clade3 flagella 98.5 1.5E-07 3.2E-12 86.4 5.1 63 18-82 115-177 (418)
500 TIGR00606 rad50 rad50. This fa 98.5 2.9E-07 6.3E-12 95.7 7.9 78 18-106 6-88 (1311)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-68 Score=435.38 Aligned_cols=217 Identities=30% Similarity=0.444 Sum_probs=193.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+|+|++ ..+|++|||+|++||+++|+||||||||||||||+||.+|++|+|+++|+++.... .....
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~~~~~ 75 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---DILKL 75 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---hHHHH
Confidence 47999999999975 57999999999999999999999999999999999999999999999998764322 11234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
|+++|+|||+++ +|+++||.||+.++. ..... ..+.+.++.+.++|+.+||.+. .+.||.+|||||||||+|||||
T Consensus 76 R~~vGmVFQ~fn-LFPHlTvleNv~lap-~~v~~-~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 76 RRKVGMVFQQFN-LFPHLTVLENVTLAP-VKVKK-LSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHhcCeeccccc-ccccchHHHHHHhhh-HHHcC-CCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHH
Confidence 788999999985 899999999999872 21111 1245566788999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++|+++|+|||||+|||+...++++.++++++ +.|+|+|||++.++.+.+|||++|++|+++.++
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 999999999999999999999999999999975 699999999999999999999999999998887
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-64 Score=429.23 Aligned_cols=220 Identities=30% Similarity=0.468 Sum_probs=196.3
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||++++|+|.|... ...+++||||+|++||++||+|.||||||||+|+|++|.+|++|+|.++|+++...+.....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr- 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR- 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH-
Confidence 68999999999752 24699999999999999999999999999999999999999999999999998765443222
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..|++|||+||+++ ++...||++|++|++.... ..+++.+.++.++++.+||++. .+++|.+|||||||||+|||
T Consensus 80 ~~R~~IGMIFQhFn-LLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 80 QLRQKIGMIFQHFN-LLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHhhccEEecccc-ccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHH
Confidence 34688999999985 7778999999999743322 2356677889999999999975 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||.|||||+|||++.+.++++|+++++ +.||++|||.|+.+.++||||.+|++|+++.++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 99999999999999999999999999999999975 5899999999999999999999999999998765
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-62 Score=408.75 Aligned_cols=212 Identities=37% Similarity=0.522 Sum_probs=186.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+.+.+.
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p--------- 70 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--------- 70 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC---------
Confidence 46899999999975 5799999999999999999999999999999999999999999999999877321
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...+|||||++. +|+..||++|+.++...... .+.+..+++.++++.+||.+. .+++|++|||||||||+|||||
T Consensus 71 ~~~~~~vFQ~~~-LlPW~Tv~~NV~l~l~~~~~---~~~e~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL 145 (248)
T COG1116 71 GPDIGYVFQEDA-LLPWLTVLDNVALGLELRGK---SKAEARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARAL 145 (248)
T ss_pred CCCEEEEeccCc-ccchhhHHhhheehhhcccc---chHhHHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHH
Confidence 356999999985 88999999999998543221 133344578999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC--CeEEEeccC
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM--GGFLVEQRI 243 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~~~~ 243 (245)
+.+|++|||||||++||..++..+.+.+.++-+ ++||++||||++++-.++|||++|.+ |++..+-.+
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i 217 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEI 217 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEec
Confidence 999999999999999999999999999999843 58999999999999999999999998 556554433
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.6e-62 Score=414.00 Aligned_cols=220 Identities=32% Similarity=0.446 Sum_probs=194.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+++|++ +++++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++...+. +.+
T Consensus 1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~----kel 74 (258)
T COG1120 1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP----KEL 74 (258)
T ss_pred CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH----HHH
Confidence 36999999999974 579999999999999999999999999999999999999999999999999876543 345
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||||.+. ..+.+||+|-+.+|........ ...++..+.+.++++.+|+.++ .++++.+|||||||||.||||
T Consensus 75 Ak~ia~vpQ~~~-~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-a~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPS-APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-ADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCC-CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-hcCcccccChhHHHHHHHHHH
Confidence 788999999984 4568999999999843221111 1233445578899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+++|++|||||||++||..++.+++++++++++ +.|||+++||++.+.++||++++|++|++++.+.+
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCc
Confidence 9999999999999999999999999999999973 58999999999999999999999999999998764
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-62 Score=406.49 Aligned_cols=218 Identities=32% Similarity=0.449 Sum_probs=186.7
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
|++++||++.|..+ ...+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|+++...+.......
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 47899999998643 2469999999999999999999999999999999999999999999999999877654444455
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||||||++. +++.+||.||+.++....... .....+++.++++.+||.+...+++|++||||||||||||||
T Consensus 81 R~~~iGfvFQ~~n-Ll~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 81 RRKKIGFVFQNFN-LLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHhEEEECccCC-CCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 6788999999984 889999999999753221111 113455678899999998764448999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+.+|++||+||||++||.++.++++++|+++++ ++||||||||.+.+ .+|||++.|++|++..
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999964 58999999999865 6999999999999543
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-62 Score=407.73 Aligned_cols=215 Identities=33% Similarity=0.450 Sum_probs=192.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||||.|++ +.+++|+||+|++||+++++|||||||||+||+|++|+.|++|+|+++|+++...+. ...|
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~----~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP----VELR 74 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH----HHHH
Confidence 6899999999974 579999999999999999999999999999999999999999999999999865432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-ccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-TSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++||||-|... +|+++||.||+++- +....+ .++..+++++++++.+||+. .+.+|+|++|||||+|||.+||||
T Consensus 75 r~IGYviQqig-LFPh~Tv~eNIa~V-P~L~~w--~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 75 RKIGYVIQQIG-LFPHLTVAENIATV-PKLLGW--DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred Hhhhhhhhhcc-cCCCccHHHHHHhh-hhhcCC--CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 89999999975 89999999999985 332221 24556778999999999975 357999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++||+||||++|||.++.++.+.+.++++ ++|||+||||++++..++||+.+|++|+++-..
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999975 589999999999999999999999999997543
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.7e-62 Score=403.14 Aligned_cols=224 Identities=31% Similarity=0.463 Sum_probs=198.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+.|++++|+++|++ +.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++...+.... .
T Consensus 5 ~~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~-~ 81 (263)
T COG1127 5 PEPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL-Y 81 (263)
T ss_pred CcceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH-H
Confidence 3678999999999975 579999999999999999999999999999999999999999999999999876554322 2
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++++|++||+. .+|..+||+||+.|.+..... ..++..++.+...|+.+||.....+++|.+|||||++|++|||
T Consensus 82 ~ir~r~GvlFQ~g-ALFssltV~eNVafplre~~~--lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 82 EIRKRMGVLFQQG-ALFSSLTVFENVAFPLREHTK--LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHhheeEEeecc-ccccccchhHhhheehHhhcc--CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 3467899999997 488999999999997433222 2345566778888999999876479999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|++.+|+++++||||+||||.+...+-++|+++++ +.|+++||||++.+..+|||++++.+|++++++++
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999986 58999999999999999999999999999987653
No 8
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3e-61 Score=386.88 Aligned_cols=220 Identities=26% Similarity=0.446 Sum_probs=198.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||++.|+++ +++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|+++|.++...+.... ...|
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~i-P~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI-PFLR 78 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccccc-chhh
Confidence 68999999999876 679999999999999999999999999999999999999999999999999987654433 3568
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||+|||+.- ++...||+||++|++.-... ...+.++++.++|+++||.+. .+..|.+|||||||||+||||++
T Consensus 79 R~IGvVFQD~r-LL~~~tvyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k-~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 79 RQIGVVFQDFR-LLPDRTVYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHK-ARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred heeeeEeeecc-ccccchHhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchh-hhcCccccCchHHHHHHHHHHHc
Confidence 89999999984 77899999999997432221 245567789999999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
.+|++||+||||.+|||....++++++.+++. +.||+|+|||.+.+..+-.|++.+++|+++.++.-
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999975 79999999999999999999999999999987653
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-61 Score=396.90 Aligned_cols=225 Identities=27% Similarity=0.400 Sum_probs=195.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++||++.|+++ +.+|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++......... .
T Consensus 1 ~~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr-~ 78 (258)
T COG3638 1 EMMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR-K 78 (258)
T ss_pred CceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH-H
Confidence 3689999999999753 6799999999999999999999999999999999999999999999999988665433222 2
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+|+++||+||++. +.+.++|++|++.|.......+ ...++.+..+.++|+++|+.+. +.++..+|||||+|||
T Consensus 79 ~r~~iGmIfQ~~n-Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~qra~~LSGGQQQRV 156 (258)
T COG3638 79 LRRDIGMIFQQFN-LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHhceeEeccCC-cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHhccCCcchhHHH
Confidence 3678999999985 7789999999998743222111 1124455678899999999886 6889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
+|||||+++|+++|+|||+++|||.+.+.+++.|+++++ +.|+|+..|+++.+.+||||++-|++|+++.++++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999964 59999999999999999999999999999998754
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-60 Score=421.52 Aligned_cols=214 Identities=36% Similarity=0.540 Sum_probs=193.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.++++||+++|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...+.
T Consensus 3 ~~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp------ 74 (352)
T COG3842 3 KPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP------ 74 (352)
T ss_pred CceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------
Confidence 457999999999973 579999999999999999999999999999999999999999999999999987543
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.||+|||+. .+|+++||+||++||+.... ...+.+.++++.++++.++|+++ .+++|++|||||||||+||||
T Consensus 75 ~kR~ig~VFQ~Y-ALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 75 EKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred hhcccceeecCc-ccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHH
Confidence 257899999998 48999999999999965211 11234566789999999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+|++||||||+|+||..-++++...++++.+ +.|.|+||||.+++..++|||.+|++|+|.--
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~ 218 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV 218 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec
Confidence 9999999999999999999999999999999864 58999999999999999999999999998653
No 11
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=398.78 Aligned_cols=216 Identities=31% Similarity=0.457 Sum_probs=185.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|++.....
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~------- 72 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR------- 72 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-------
Confidence 4679999999999753 6999999999999999999999999999999999999999999999998754321
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+.+||||||.... .-++.||+|.+.++........ ...+...+.+.++|+.+|+.++ .++++++|||||+|||.||
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-RDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-hCCcccccCcHHHHHHHHH
Confidence 14689999996532 2347899999999843322211 1223345679999999999986 7999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|+|||||+|+|+.++..|+++|.++++ ++||++||||++.+..+||+|+.|+ +++++.+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 999999999999999999999999999999999975 6999999999999999999999997 5666544
No 12
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=398.59 Aligned_cols=219 Identities=39% Similarity=0.595 Sum_probs=195.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++++++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++++|+++|++|.|.++|.++... ......
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~---~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE---KSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccch---hhHHHh
Confidence 579999999999865 6799999999999999999999999999999999999999999999999876420 111234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++|||||+|..+++..||.++++|+...... ..++...++.++++.+|+.++ ++++|++|||||||||+||.+|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~---~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL---PREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCC---CHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHH
Confidence 788999999999899999999999998433222 133567789999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|++||||||||+||+.++++++++++++++ ++|+|++|||++++..+|||+++|++|+++.++.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999999999999999999999999999974 3799999999999999999999999999988764
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-59 Score=411.93 Aligned_cols=212 Identities=32% Similarity=0.485 Sum_probs=191.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++||+|.|++. . +++++||+|++||+++|+||||||||||||+|+||++|++|+|.++|++++..+..
T Consensus 2 ~~i~l~~v~K~yg~~-~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~------ 73 (338)
T COG3839 2 AELELKNVRKSFGSF-E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE------ 73 (338)
T ss_pred cEEEEeeeEEEcCCc-e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh------
Confidence 579999999999752 2 89999999999999999999999999999999999999999999999999765432
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.+.||||||++. +|+++||+||++|++..... .+.+.++++.++.+.++|+++ ++++|.+|||||||||+|||||
T Consensus 74 ~R~iamVFQ~yA-LyPhmtV~~Niaf~Lk~~~~---~k~ei~~rV~eva~~L~l~~l-L~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 74 KRGIAMVFQNYA-LYPHMTVYENIAFGLKLRGV---PKAEIDKRVKEVAKLLGLEHL-LNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred HCCEEEEeCCcc-ccCCCcHHHHhhhhhhhCCC---chHHHHHHHHHHHHHcCChhH-HhcCcccCChhhHHHHHHHHHH
Confidence 478999999984 88999999999998543221 245667889999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|+++|||||+|+||+..+..+...|+++.+ +.|+|++|||..++..++||+.+|++|++..-
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 999999999999999999999999999999975 48999999999999999999999999988543
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-59 Score=388.11 Aligned_cols=219 Identities=36% Similarity=0.459 Sum_probs=188.5
Q ss_pred ceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
++|+++|+++.|+++. .+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+.+....+ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~---~~ 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR---AK 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc---ch
Confidence 5799999999997531 149999999999999999999999999999999999999999999999987654322 12
Q ss_pred CCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.|.+|||||..-++ ..||.+-+.-++... + . . ..++++.++++.+||.+.+++++|++|||||+||+|||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~-~--~-~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-G-L--S-KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccC-C-c--c-HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 456789999999975554 568888887664321 1 1 1 12334889999999998888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++||||||||+||...+.+++++|.++++ +.|+||||||+..+..+|||+++|++|+++....
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999999999999999999975 4799999999999999999999999999987653
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-59 Score=401.62 Aligned_cols=217 Identities=30% Similarity=0.476 Sum_probs=190.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|+++.|+. ..+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+.+.+... ...+
T Consensus 1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~---~~~~ 75 (345)
T COG1118 1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN---LAVR 75 (345)
T ss_pred Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc---cchh
Confidence 46999999999974 578999999999999999999999999999999999999999999999993332211 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.++||||||+.. +|+.+||.+|++||..... ....+...+.++.++|+.+.|+.. .+++|.+|||||||||+|||||
T Consensus 76 ~R~VGfvFQ~YA-LF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~l-a~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 76 DRKVGFVFQHYA-LFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGL-ADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hcceeEEEechh-hcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccch-hhcCchhcChHHHHHHHHHHHh
Confidence 578999999985 8999999999999964431 122244567789999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|++||||||+++||...+.++...|+++.+ +.|.++||||.+++.++||||++|++|+|..-
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 999999999999999999999999999999964 58999999999999999999999999998653
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.6e-58 Score=407.66 Aligned_cols=220 Identities=25% Similarity=0.426 Sum_probs=188.2
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l-~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL-TK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-HH
Confidence 58999999999632 2469999999999999999999999999999999999999999999999998854321110 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||+||++. +++..||+||+.++.... .. ......+++.++++.+||.+. .++++.+|||||||||+||||
T Consensus 80 ~r~~Ig~v~Q~~~-l~~~~tv~eni~~~~~~~-~~--~~~~~~~~v~e~l~~vgL~~~-~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 80 ARRQIGMIFQHFN-LLSSRTVFGNVALPLELD-NT--PKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HhcCEEEEECCcc-ccccCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 2568999999984 677789999999863211 11 123345568899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||++||+.++..++++|+++++ +.|||++||+++.+.++||++++|++|+++..+.
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999964 5899999999999999999999999999987643
No 17
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=377.69 Aligned_cols=219 Identities=27% Similarity=0.421 Sum_probs=189.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~ 89 (245)
.+.++++||++.|+. +.+|+|||++|++++++||+||||||||||||+++.+.... +|+|.++|+++......
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 456999999999974 57999999999999999999999999999999999998776 49999999999764322
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqk 166 (245)
....|++||+|||.|. .| ++|++||+++|. +..+.. . +..++.+++.|+...|++. .+++.+..||||||
T Consensus 83 --~~~lRr~vGMVFQkPn-PF-p~SIydNVayG~-r~~g~~-~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 83 --VVELRRRVGMVFQKPN-PF-PMSIYDNVAYGL-RLHGIK-D-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred --HHHHHHHheeeccCCC-CC-CchHHHHHHHhH-Hhhccc-h-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 2235789999999995 45 499999999983 322222 2 4566778888888777642 35788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|++||||||||+|||.+..++.++|.+++++.|||+|||+|..+.+++|+.+++..|+++..+.
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 9999999999999999999999999999999999999999988999999999999999999999999999998654
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-56 Score=402.75 Aligned_cols=214 Identities=28% Similarity=0.432 Sum_probs=187.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+. .
T Consensus 2 ~~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~------~ 74 (356)
T PRK11650 2 AGLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP------A 74 (356)
T ss_pred CEEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH------H
Confidence 36999999999932 2469999999999999999999999999999999999999999999999998854321 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.++...... ...+...++.++++.++|++. +++++.+|||||||||+|||||
T Consensus 75 ~r~ig~v~Q~~~-lfp~~tv~eNi~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 75 DRDIAMVFQNYA-LYPHMSVRENMAYGLKIRGM---PKAEIEERVAEAARILELEPL-LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred HCCEEEEeCCcc-ccCCCCHHHHHHhHHhhcCC---CHHHHHHHHHHHHHHcCChhH-hhCChhhCCHHHHHHHHHHHHH
Confidence 367999999985 77889999999987432111 122334568899999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+..++.+++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 999999999999999999999999999999864 589999999999999999999999999998654
No 19
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-56 Score=400.94 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=188.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+.
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~------ 75 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI------ 75 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH------
Confidence 457999999999964 568999999999999999999999999999999999999999999999998854321
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +|+.+||+||+.|+...... ...+..+++.++++.+++.+. +++++.+|||||||||+||||
T Consensus 76 ~~r~ig~vfQ~~~-lfp~~tv~eNi~~~l~~~~~---~~~~~~~~v~~~l~~~gl~~~-~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 76 QQRDICMVFQSYA-LFPHMSLGENVGYGLKMLGV---PKEERKQRVKEALELVDLAGF-EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred HHCCEEEEeCCcc-cCCCCCHHHHHHHHHhHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 78889999999997421111 123345678899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+..++++.+.|+++.+ +.|+|++|||.+++..+||++++|++|+++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-56 Score=394.66 Aligned_cols=216 Identities=30% Similarity=0.396 Sum_probs=186.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-----~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-----RH 77 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-----HH
Confidence 458999999999974 56999999999999999999999999999999999999999999999999875321 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++.+|++||+.+..... .. .......++.++++.+++.+. .++++.+||||||||++||||
T Consensus 78 ~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 78 ARQRVGVVPQFDN-LDPDFTVRENLLVFGRYF-GL--SAAAARALVPPLLEFAKLENK-ADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred HHhcEEEEeccCc-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchH-hcCchhhCCHHHHHHHHHHHH
Confidence 3578999999985 667789999998632111 11 122234467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|||||||+|||+.+++.++++|+++++ ++|||++||+++++..+|||+++|++|+++..+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999964 6899999999999999999999999999987653
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3e-56 Score=400.01 Aligned_cols=214 Identities=32% Similarity=0.481 Sum_probs=188.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~------ 73 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP------ 73 (353)
T ss_pred CcEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------
Confidence 357999999999974 468999999999999999999999999999999999999999999999998754221
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.+||+||++. +|+.+||+||+.|+...... ...+...++.++++.++|++. +++++.+|||||||||+||||
T Consensus 74 ~~r~ig~v~Q~~~-lfp~~tv~eNi~~~~~~~~~---~~~~~~~~~~~~l~~l~L~~~-~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 74 QKRDYGIVFQSYA-LFPNLTVADNIAYGLKNRGM---GRAEVAERVAELLDLVGLPGS-ERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred HHCCEEEEeCCcc-cCCCCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCCch-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 78889999999987422111 123345578899999999985 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
No 22
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.6e-57 Score=377.83 Aligned_cols=215 Identities=28% Similarity=0.482 Sum_probs=181.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|+++.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE-IPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH-HHHHH
Confidence 58999999999643246999999999999999999999999999999999999999999999998774321110 00124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 80 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 80 RHIGMVFQDHR-LLSDRTVYDNVAFPLRII-GV--PPRDANERVSAALEKVGLEGK-AHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HhceEEecCcc-ccccccHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHh
Confidence 57999999984 666789999998752211 11 112234467889999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999864 68999999999999999999999999974
No 23
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.5e-56 Score=397.71 Aligned_cols=226 Identities=28% Similarity=0.396 Sum_probs=192.2
Q ss_pred cCCCCCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 5 KKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
++++.+..++.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 29 ~~~~~~~~~~~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 29 AKASIPGSMSTVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106 (340)
T ss_pred CchhhcccCCceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 4455555566778999999999974 46999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
... ...++.+||+||++. +++.+|+.||+.+..... .. ........+.++++.+++.+. .++++.+||||
T Consensus 107 ~~~-----~~~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~ll~~~~L~~~-~~~~~~~LS~G 176 (340)
T PRK13536 107 ARA-----RLARARIGVVPQFDN-LDLEFTVRENLLVFGRYF-GM--STREIEAVIPSLLEFARLESK-ADARVSDLSGG 176 (340)
T ss_pred cch-----HHHhccEEEEeCCcc-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hCCChhhCCHH
Confidence 321 123567999999984 567889999998631111 11 112233456788999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||++||+||+++|++|||||||+||||.++..++++|+++.+ +.|||++||+++++..+||+|++|++|+++..+.
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999864 6899999999999999999999999999987653
No 24
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-56 Score=392.05 Aligned_cols=215 Identities=36% Similarity=0.541 Sum_probs=187.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++||+++|++ .+.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+..... ...
T Consensus 3 ~~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~-----~~~ 76 (293)
T COG1131 3 EVIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP-----AKV 76 (293)
T ss_pred ceeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH-----HHH
Confidence 35889999999973 257999999999999999999999999999999999999999999999998875321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+|++||+.|........ .....++++++++.++|.+. .++++.+||+|||||++||+||
T Consensus 77 ~~~igy~~~~~~-~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~-~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 77 RRRIGYVPQEPS-LYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDK-ANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HhheEEEccCCC-CCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchh-hCcchhhcCHHHHHHHHHHHHH
Confidence 578999999996 778999999998852211111 12335578899999999974 5889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||+||||.++.+++++|+++++ + .||+++||.++++..+||+|++|++|++++++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999975 5 79999999999999999999999999999876
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-56 Score=376.99 Aligned_cols=217 Identities=34% Similarity=0.479 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ...+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE-LYRLRR 77 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhh-HHHHhc
Confidence 478999999964 46999999999999999999999999999999999999999999999998874321100 012356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++....... .......++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 78 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 78 RMGMLFQSGA-LFDSLTVFENVAFPLREHTRL--SEEEIREIVLEKLEAVGLRGA-EDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred ceEEEccCcc-cCCCCcHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 667789999998752211111 122334567888999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 9999999999999999999999999999864 689999999999999999999999999998654
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-55 Score=398.60 Aligned_cols=215 Identities=31% Similarity=0.484 Sum_probs=188.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~----- 83 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA----- 83 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-----
Confidence 3457999999999964 468999999999999999999999999999999999999999999999998754221
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++.+||+||++. +|+.+||+||+.|+.... .. ......+++.++++.++|.+. ++++|.+|||||||||+|||
T Consensus 84 -~~r~ig~vfQ~~~-lfp~ltv~eNi~~~l~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 84 -ENRHVNTVFQSYA-LFPHMTVFENVAFGLRMQ-KT--PAAEITPRVMEALRMVQLEEF-AQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred -HHCCEEEEecCcc-cCCCCCHHHHHHHHHhhc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHH
Confidence 2467999999984 788999999999874211 11 122334567889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+..++.+++.|+++.+ +.|+|+||||.+++..+||++++|++|+++..+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999864 589999999999999999999999999998654
No 27
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-55 Score=370.87 Aligned_cols=210 Identities=38% Similarity=0.582 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP------PERR 72 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc------hhhc
Confidence 478999999964 56999999999999999999999999999999999999999999999998874321 1245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+++|+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 73 NIGMVFQDYA-LFPHLTVAENIAFGLKLR-GV--PKAEIRARVRELLELVGLEGL-LNRYPHELSGGQQQRVALARALAR 147 (213)
T ss_pred cEEEEcCchh-hccCCcHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 666789999998752111 10 112234457889999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999853 68999999999999999999999999998754
No 28
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.6e-55 Score=395.24 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=187.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..
T Consensus 1 ~~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~------~~ 72 (353)
T PRK10851 1 MSIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH------AR 72 (353)
T ss_pred CEEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC------HH
Confidence 35999999999974 46999999999999999999999999999999999999999999999999875321 12
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||+||++. +|+.+||.||+.++...... ......+..+++.++++.++|++. +++++.+|||||||||+||||
T Consensus 73 ~r~i~~v~Q~~~-l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalArA 150 (353)
T PRK10851 73 DRKVGFVFQHYA-LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-ADRYPAQLSGGQKQRVALARA 150 (353)
T ss_pred HCCEEEEecCcc-cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 467999999984 77889999999987432100 001123345578899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
No 29
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-57 Score=366.91 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=190.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||++.+++++|+. ...+++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.|....+. ..+
T Consensus 1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-----~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-----FVR 74 (245)
T ss_pred CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-----HHh
Confidence 6899999999976 3459999999999999999999999999999999999999999999999998754332 347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||.+|..- .++..+|++||+.|..... . ..+.+.+.++.++.+.++|.+. +++++.++|.||||||+|||||+
T Consensus 75 r~IGVl~~e~-glY~RlT~rEnl~~Fa~L~-~--l~~~~~kari~~l~k~l~l~~~-~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 75 RKIGVLFGER-GLYARLTARENLKYFARLN-G--LSRKEIKARIAELSKRLQLLEY-LDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred hhcceecCCc-ChhhhhhHHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHhChHHH-HHHHHhhhchhhHHHHHHHHHHh
Confidence 8899999554 4667899999998742111 1 1234556778899999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccCC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 244 (245)
++|++++|||||||||..++..+.+.++++++ +.+||++||+|++++.+||+|++|++|+++.+++++
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~ 218 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence 99999999999999999999999999999986 799999999999999999999999999999987653
No 30
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-55 Score=374.26 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=185.0
Q ss_pred CcceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.++|+++|++++|+++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+....
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 2 NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred CCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 346899999999996422 469999999999999999999999999999999999999999999999988754321100
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|+||++. +++..|+.+|+.++...... ......+++.++++.+|+.+. .++++.+||||||||++|
T Consensus 82 ~~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 82 AELRNQKLGFIYQFHH-LLPDFTALENVAMPLLIGKK---KPAEINSRALEMLAAVGLEHR-ANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHhccEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHH
Confidence 0011257999999984 66678999999875211111 112234567889999999875 689999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+ |++++|++|+++.....
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999853 68999999999998764 79999999999877654
No 31
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-55 Score=396.37 Aligned_cols=218 Identities=28% Similarity=0.439 Sum_probs=189.8
Q ss_pred cCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 12 SCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 12 ~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
....++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+
T Consensus 14 ~~~~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---- 87 (377)
T PRK11607 14 KALTPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---- 87 (377)
T ss_pred ccCCceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC----
Confidence 344668999999999964 46899999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..++.+||+||++. +|+.+||.||+.++...... ...+..+++.++++.+++.+. .++++.+|||||||||+|
T Consensus 88 --~~~r~ig~vfQ~~~-lfp~ltv~eNi~~~l~~~~~---~~~~~~~~v~~~l~~l~L~~~-~~~~~~~LSgGq~QRVaL 160 (377)
T PRK11607 88 --PYQRPINMMFQSYA-LFPHMTVEQNIAFGLKQDKL---PKAEIASRVNEMLGLVHMQEF-AKRKPHQLSGGQRQRVAL 160 (377)
T ss_pred --HHHCCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHH
Confidence 12467999999985 78899999999987422111 123345578899999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++|||.+++..+||++++|++|+++..+.
T Consensus 161 ARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence 9999999999999999999999999999999998753 5899999999999999999999999999986543
No 32
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.8e-56 Score=373.44 Aligned_cols=214 Identities=32% Similarity=0.482 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.......+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 4699999999999999999999999999999999999999999999999876432211000112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+|+.+. +++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFN-LLPDLTALENVELPLLLA-GV--PKKERRERAEELLERVGLGDR-LNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccc-cCCCCcHHHHHHHHHhhc-CC--CHHHHHHHHHHHHHHcCCchh-hhcChhhcCHHHHHHHHHHHHH
Confidence 457999999985 566789999998853211 11 112234467889999999875 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++++. +||++++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999864 689999999999987 9999999999974
No 33
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-55 Score=385.74 Aligned_cols=223 Identities=31% Similarity=0.501 Sum_probs=185.6
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999996321 25999999999999999999999999999999999999999999999999874311111111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.+||+||+|...++..|+.+|+.|+.... .. ...+...++.++++.++|.+...++++.+||||||||++|||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GI--PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 235679999999853455679999999863211 11 122344567889999999632368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+|||+++|++|+++..+.
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999864 6899999999999999999999999999987653
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2e-55 Score=395.48 Aligned_cols=212 Identities=31% Similarity=0.459 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--ceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS--GSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++...+. .
T Consensus 6 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~------~ 77 (362)
T TIGR03258 6 IRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP------H 77 (362)
T ss_pred EEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH------H
Confidence 899999999974 469999999999999999999999999999999999999999 999999998753221 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.+||+||++. +|+.+||+||+.|+...... .......++.++++.++|++. +++++.+|||||||||+|||||
T Consensus 78 ~r~ig~vfQ~~~-l~p~~tv~enl~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 78 KRGLALLFQNYA-LFPHLKVEDNVAFGLRAQKM---PKADIAERVADALKLVGLGDA-AAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred HCCEEEEECCcc-cCCCCcHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCCch-hhCChhhCCHHHHHHHHHHHHH
Confidence 467999999985 77889999999987421111 123344568899999999975 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK---ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999864 5799999999999999999999999999987643
No 35
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-55 Score=385.18 Aligned_cols=222 Identities=35% Similarity=0.507 Sum_probs=184.4
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999642 146999999999999999999999999999999999999999999999999874311110111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++++||+||++...++..||.||+.++.... .. ......+++.++++.++|....+++++.+|||||||||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF-GV--SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 234679999999753455679999998862211 11 122233467889999999733368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999863 689999999999999999999999999998764
No 36
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-55 Score=394.08 Aligned_cols=219 Identities=27% Similarity=0.468 Sum_probs=185.8
Q ss_pred eEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++ ..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.... ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~-~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL-RK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH-HH
Confidence 5899999999962 13579999999999999999999999999999999999999999999999998754321100 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++..|+.||+.++.... .. ......+++.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 80 ~~~~ig~v~q~~~-l~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 80 ARRQIGMIFQHFN-LLSSRTVFDNVALPLELA-GT--PKAEIKARVTELLELVGLSDK-ADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HhcCEEEEeCCCc-cCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999985 667789999998862211 11 122334567889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999863 689999999999999999999999999998754
No 37
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-55 Score=382.90 Aligned_cols=219 Identities=36% Similarity=0.552 Sum_probs=185.2
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+|+++||++.|++. .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHH
Confidence 48999999999642 1369999999999999999999999999999999999999999999999998754211 001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC--CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD--GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+++++||+||++...++..||++|+.++.... .. ...+..+++.++++.+||. +. .++++.+||||||||++|
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GL--SEEEIENRVKRAMNIVGLDYEDY-KDKSPFELSGGQKRRVAI 155 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHC-CC--CHHHHHHHHHHHHHHcCCCchhh-ccCCcccCCHHHHHHHHH
Confidence 235689999999854455689999998752211 11 1233445678899999996 43 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.++.+++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999863 689999999999999999999999999998754
No 38
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-56 Score=371.52 Aligned_cols=222 Identities=31% Similarity=0.474 Sum_probs=195.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+++++++|+++|++ ..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++...+.. +.
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~---~i 76 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH---RI 76 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHH---HH
Confidence 467999999999975 5799999999999999999999999999999999999999999999999999876532 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCC------C---CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ------S---GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~------~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
.+..|+--||.+. .|+.+||.||+..+.... . .......+..+++.++|+.+||.+. ++++..+||+||
T Consensus 77 ar~Gi~RTFQ~~r-lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITR-LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-ADRPAGNLSYGQ 154 (250)
T ss_pred Hhccceeeccccc-ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-hcchhhcCChhH
Confidence 3567888999984 789999999998862211 0 0111234566788999999999986 799999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+|+.|||||+.+|++|+||||.+||.+....++.++|+++++ +.||++|.|||+.+..+||||++|+.|++++++.+
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999985 38999999999999999999999999999998753
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-55 Score=371.99 Aligned_cols=215 Identities=35% Similarity=0.522 Sum_probs=182.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP------VQE 73 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC------ccc
Confidence 5999999999964 46999999999999999999999999999999999999999999999998864321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.++|+||++. +++..|+.||+.++...... .........+.+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 74 ~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 74 RNVGFVFQHYA-LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-ADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cceEEEecCCc-ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHH
Confidence 57999999984 56678999999875321110 000112233457788999999865 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|.++++ ++|||++|||++++..+||++++|++|+++..+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 999999999999999999999999999999864 589999999999999999999999999997654
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-55 Score=394.52 Aligned_cols=213 Identities=30% Similarity=0.447 Sum_probs=185.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 2 ~~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~------~ 73 (369)
T PRK11000 2 ASVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP------A 73 (369)
T ss_pred CEEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH------h
Confidence 36999999999964 469999999999999999999999999999999999999999999999998753221 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +|+.+||.||+.++...... .......++.++++.++|.+. +++++.+|||||||||+|||||
T Consensus 74 ~~~i~~v~Q~~~-l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~lgL~~~-~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 74 ERGVGMVFQSYA-LYPHLSVAENMSFGLKLAGA---KKEEINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred HCCEEEEeCCcc-cCCCCCHHHHHHhHHhhcCC---CHHHHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHH
Confidence 357999999984 67789999999986321111 122334568889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999853 689999999999999999999999999998654
No 41
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-55 Score=386.91 Aligned_cols=232 Identities=30% Similarity=0.442 Sum_probs=190.1
Q ss_pred CCCccCCcceEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 8 AGGISCDYSCLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 8 ~~~~~~~~~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
-.....+.++|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.
T Consensus 12 ~~~~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 12 VPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG 91 (320)
T ss_pred CCCCCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence 34445566789999999999642 135999999999999999999999999999999999999999999999998874
Q ss_pred CCC-----------CC-CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc
Q 035832 85 GEP-----------NN-SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 85 ~~~-----------~~-~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (245)
... .. ......++++||+||++...++..|+.||+.++.... .. .......++.++++.+++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~ 168 (320)
T PRK13631 92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GV--KKSEAKKLAKFYLNKMGLDDS 168 (320)
T ss_pred cccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CC--CHHHHHHHHHHHHHHcCCChh
Confidence 320 00 0011235689999999853445679999998862111 11 122334567889999999632
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEE
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ +.|||++|||++++..+||++++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 36899999999999999999999999999999999999999999999999999864 68999999999999999999999
Q ss_pred EeCCeEEEecc
Q 035832 232 MDMGGFLVEQR 242 (245)
Q Consensus 232 l~~G~i~~~~~ 242 (245)
|++|+++..+.
T Consensus 249 l~~G~i~~~g~ 259 (320)
T PRK13631 249 MDKGKILKTGT 259 (320)
T ss_pred EECCEEEEeCC
Confidence 99999987653
No 42
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-55 Score=382.71 Aligned_cols=223 Identities=30% Similarity=0.486 Sum_probs=184.7
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999996321 36999999999999999999999999999999999999999999999999875321111111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++|||+||+|...++..|+.+|+.++.... .. .......++.++++.+||.....++++.+|||||||||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KM--NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 235689999999743445569999998862111 11 122334567889999999622368899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+|||+++|++|+++..+.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999985 3 6899999999999999999999999999987653
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.9e-55 Score=366.13 Aligned_cols=204 Identities=30% Similarity=0.469 Sum_probs=176.1
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-------~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-------KERRKS 72 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------HHhhcc
Confidence 368999999642 469999999999999999999999999999999999999999999999987632 123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++...++..|+.||+.++.... . ....++.++++.+++.+. .++++.+||||||||++|||||+.+
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~------~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL-D------AGNEQAETVLKDLDLYAL-KERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc-C------ccHHHHHHHHHHcCCchh-cCCCchhCCHHHHHHHHHHHHHHhC
Confidence 9999999743345679999998753211 1 012356788999999875 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|++|||||||+|||+.+++.++++|++++ ++.|||++|||++++..+||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999985 4689999999999999999999999999874
No 44
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-55 Score=385.39 Aligned_cols=222 Identities=31% Similarity=0.471 Sum_probs=184.4
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-----
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----- 88 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 88 (245)
+|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 599999999996421 259999999999999999999999999999999999999999999999876521100
Q ss_pred --------C-------CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 89 --------N-------SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 89 --------~-------~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
. .....++++|||+||+|...++..||+||+.|+.... .. .......++.++++.+||....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GV--SKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHcCCChhh
Confidence 0 0011235679999999754556779999999863211 11 1233445688899999996323
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|||++|||++++..+|||+++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999864 689999999999999999999999
Q ss_pred eCCeEEEec
Q 035832 233 DMGGFLVEQ 241 (245)
Q Consensus 233 ~~G~i~~~~ 241 (245)
++|+++..+
T Consensus 239 ~~G~i~~~g 247 (305)
T PRK13651 239 KDGKIIKDG 247 (305)
T ss_pred ECCEEEEEC
Confidence 999998754
No 45
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-55 Score=380.08 Aligned_cols=218 Identities=33% Similarity=0.500 Sum_probs=185.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ...+
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN----EKWV 77 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----HHHH
Confidence 379999999999632 46999999999999999999999999999999999999999999999998874321 1122
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++...++..|+.+|+.++.... . . .......++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~-~-~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM-G-L-DKDEVERRVEEALKAVRMWDF-RDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHc-C-C-CHHHHHHHHHHHHHHCCCHHH-hcCChhhCCHHHHHHHHHHHHH
Confidence 4679999999743455689999998752111 1 1 122334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||++||+.++.+++++|+++++ +.|||++|||++++.++||++++|++|+++..+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999864 6899999999999999999999999999987653
No 46
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-56 Score=363.20 Aligned_cols=221 Identities=25% Similarity=0.363 Sum_probs=192.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|.++|+.|+|++ ++++++|||++++||+++|+|||||||||.+.+++|+.+|++|+|.++|.|++..+... .
T Consensus 2 ~~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~---R 76 (243)
T COG1137 2 MSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK---R 76 (243)
T ss_pred CcEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHH---H
Confidence 356999999999975 57999999999999999999999999999999999999999999999999998765422 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+..|||+||+++ .|-.+||.||+...+...... ....+.+.+++++|+.|++.+. .+++..+||||||+|+.||||
T Consensus 77 ArlGigYLpQE~S-IFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hl-r~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 77 ARLGIGYLPQEAS-IFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHL-RDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred hhcCcccccccch-HhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHH-hcCcccccccchHHHHHHHHH
Confidence 2457999999996 688999999998753221111 1122334457899999999986 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+.+|+++||||||+|+||.+..++.++++.++. +..|+++.|+..+...+|||.+++.+|++++++++
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence 9999999999999999999999999999999975 69999999999999999999999999999998753
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.8e-55 Score=389.94 Aligned_cols=226 Identities=25% Similarity=0.344 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEECCCC-----------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc
Q 035832 14 DYSCLEVRDVSYRPPGT-----------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-----------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 82 (245)
..++|+++||+++|+.+ ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 45689999999999621 2469999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Q 035832 83 NDGEPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL 161 (245)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 161 (245)
+......... .++++++||||+|. .+++.+|+.+|+.++........ ...+..+++.++++.+++.+..+++++++|
T Consensus 85 i~~~~~~~~~-~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 85 LLGMKDDEWR-AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKL-SRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCcCCHHHHH-HHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 7543211111 12467999999984 35567899999987521110001 123344567889999999543469999999
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.+ +.|+|+||||++++..+||++++|.+|+++.
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 6899999999999999999999999999987
Q ss_pred ec
Q 035832 240 EQ 241 (245)
Q Consensus 240 ~~ 241 (245)
.+
T Consensus 243 ~g 244 (331)
T PRK15079 243 LG 244 (331)
T ss_pred Ec
Confidence 64
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.4e-55 Score=383.91 Aligned_cols=215 Identities=28% Similarity=0.374 Sum_probs=184.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..
T Consensus 2 ~~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~ 74 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-----RL 74 (303)
T ss_pred CcEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-----HH
Confidence 357999999999964 46999999999999999999999999999999999999999999999998764211 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++.+|+.||+.+..... .. .......++.++++.+++.+. .++++.+||||||||++||||
T Consensus 75 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~ll~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 75 ARVAIGVVPQFDN-LDPEFTVRENLLVFGRYF-GM--STREIEAVIPSLLEFARLESK-ADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred HhhcEEEEecccc-CCcCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhH-hcCchhhCCHHHHHHHHHHHH
Confidence 3567999999985 566789999997531111 11 112233456788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 689999999999999999999999999998754
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-54 Score=365.34 Aligned_cols=212 Identities=37% Similarity=0.538 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---------~ 71 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---------P 71 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---------c
Confidence 47899999996411 469999999999999999999999999999999999999999999999987631 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||
T Consensus 72 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~la~al 146 (220)
T cd03293 72 GPDRGYVFQQDA-LLPWLTVLDNVALGLELQ-GV--PKAEARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVALARAL 146 (220)
T ss_pred cCcEEEEecccc-cccCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhCCcccCCHHHHHHHHHHHHH
Confidence 457999999985 566689999998752111 11 112234467889999999875 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEeccC
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVEQRI 243 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~~~~ 243 (245)
+.+|++|||||||+|||+.+++.++++|+++. + +.|||++||+++++..+||++++|+ +|+++.+..+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999984 3 5899999999999999999999999 7999876543
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-54 Score=363.89 Aligned_cols=210 Identities=30% Similarity=0.497 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~------~~~ 72 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP------KDR 72 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc------ccc
Confidence 478999999974 469999999999999999999999999999999999999999999999988743211 135
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+|+.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 73 DIAMVFQNYA-LYPHMTVYDNIAFGLKLR-KV--PKDEIDERVREVAELLQIEHL-LDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred eEEEEecChh-hccCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHHH-HhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998752111 11 122334467888999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999863 68999999999999999999999999999764
No 51
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-55 Score=367.49 Aligned_cols=212 Identities=31% Similarity=0.436 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-----REVRR 73 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-----HHHhh
Confidence 579999999964 46999999999999999999999999999999999999999999999998764311 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.+|+.++.... .. .......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 74 RIGIVFQDLS-VDDELTGWENLYIHARLY-GV--PGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred cEEEecCCcc-ccccCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998752111 11 112234467889999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999999863 589999999999999999999999999998654
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.9e-55 Score=395.61 Aligned_cols=219 Identities=27% Similarity=0.341 Sum_probs=188.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..+
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~----~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA----RAA 75 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH----HHH
Confidence 47999999999974 579999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||++|++. +++.+|+.||+.++..... ..........+++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 76 ~~~ig~v~q~~~-l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTS-LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCC-CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHH
Confidence 567999999985 5668999999998632110 0000112334568899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|||||||+|||+.++.+++++|+++.+ +.|||++|||++++.++|||+++|++|+++..+.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999974 6899999999999999999999999999987653
No 53
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.2e-55 Score=367.18 Aligned_cols=214 Identities=26% Similarity=0.419 Sum_probs=182.8
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~ 75 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP-----AE 75 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH-----HH
Confidence 588999999997421 16999999999999999999999999999999999999999999999998874311 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.++|+||++. +++..|+.||+.+..... .. .......++.++++.+|+.+. +++++.+||||||||++||||
T Consensus 76 ~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 76 ARRRLGFVSDSTG-LYDRLTARENLEYFAGLY-GL--KGDELTARLEELADRLGMEEL-LDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred HHhhEEEecCCcc-cCcCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-HhhhhhhcCHHHHHHHHHHHH
Confidence 3567999999984 666789999998642111 10 112234567889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999999999999999999999864 68999999999999999999999999998754
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.5e-55 Score=367.16 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-----KAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-----HHHhh
Confidence 5789999999642246999999999999999999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.+|+.+..... .. ......+++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 76 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 76 SLGYCPQFDA-LFDELTVREHLRFYARLK-GL--PKSEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred hEEEecCcCC-ccccCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-HhChhhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998742111 11 112233467888999999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999876789999999999999999999999999998654
No 55
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-54 Score=380.31 Aligned_cols=221 Identities=33% Similarity=0.526 Sum_probs=183.5
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 68999999999632 146999999999999999999999999999999999999999999999999874311000011
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++.++|+||++...++..|+.||+.++...... .......++.++++.+|+. .. .++++.+||||||||++||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGF---SEDEAKEKALKWLKKVGLSEDL-ISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhH-hhCCcccCCHHHHHHHHHH
Confidence 22457999999974334468999999875211111 1223344678899999997 44 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999864 689999999999999999999999999998654
No 56
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-55 Score=378.50 Aligned_cols=221 Identities=32% Similarity=0.410 Sum_probs=196.5
Q ss_pred eEEEEeEEEECCCCc----------------------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 17 CLEVRDVSYRPPGTQ----------------------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~----------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
.|+++|+++-|+++. ..-++|+||+++.|||+.|+|-||||||||+|++++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 589999999886421 2367999999999999999999999999999999999999999
Q ss_pred eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC
Q 035832 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 154 (245)
+|.++|.++...+.......+++++++|||++. ++|+.||.||+.||+..... .+.+.++++.++++.+||..+ .
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa-LlPhrtVl~Nv~fGLev~Gv---~~~er~~~a~~~l~~VgL~~~-~ 158 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFA-LLPHRTVLENVAFGLEVQGV---PKAEREERALEALELVGLEGY-A 158 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc-cccchhHhhhhhcceeecCC---CHHHHHHHHHHHHHHcCchhh-h
Confidence 999999999877655555567789999999985 88999999999998543221 244566788999999999985 7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++|++|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.++.+ .+||+|||||++++.++.|||.+|
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 999999999999999999999999999999999999999999999999999975 489999999999999999999999
Q ss_pred eCCeEEEecc
Q 035832 233 DMGGFLVEQR 242 (245)
Q Consensus 233 ~~G~i~~~~~ 242 (245)
++|+++-.+.
T Consensus 239 kdG~ivQ~Gt 248 (386)
T COG4175 239 KDGEIVQVGT 248 (386)
T ss_pred cCCeEEEeCC
Confidence 9999986553
No 57
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-54 Score=369.54 Aligned_cols=217 Identities=33% Similarity=0.522 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~ 75 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP---HEIARL 75 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH---HHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999987743211 111235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-------hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-------QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.++|+||++. +++..|+.||+.++........ .........+.++++.+|+++. .++++.+|||||||||+
T Consensus 76 ~i~~v~q~~~-l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 76 GIGRTFQIPR-LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-ADRPAGELSYGQQRRLE 153 (236)
T ss_pred CEEEEecccc-cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-hhCChhhCCHHHHHHHH
Confidence 6999999985 6677899999987532111100 0012234467889999999875 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+.+++.++++|++++ +++|||++|||++++..+||++++|++|+++..+
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 9999999999999999999999999999999999986 4689999999999999999999999999998654
No 58
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8.8e-55 Score=365.27 Aligned_cols=213 Identities=32% Similarity=0.487 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ-LPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH-HHHHH
Confidence 5899999999952 246999999999999999999999999999999999999999999999998875321110 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.+|+.++.... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 79 RRIGVVFQDFR-LLPDRTVYENVALPLEVR-GK--KEREIQRRVGAALRQVGLEHK-ADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred hheEEEecChh-hccCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHh
Confidence 67999999984 566789999998752111 10 112234567889999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++..+||++++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999864 6899999999999999999999999885
No 59
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-54 Score=378.12 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=184.7
Q ss_pred ceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV----WD 78 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HH
Confidence 479999999999642 2459999999999999999999999999999999999999999999999998753211 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++||+||++..+++..||.+|+.++.... .. ......+++.++++.+||.+. .++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GI--PHEEMKERVNEALELVGMQDF-KEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHHHHH
Confidence 34679999999743566789999998863211 11 122334567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++ .+||++++|++|+++..+
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999863 68999999999998 589999999999998754
No 60
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.3e-55 Score=348.02 Aligned_cols=211 Identities=31% Similarity=0.481 Sum_probs=186.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||.+++|.++|+. .==.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++....... .
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~------~ 70 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA------E 70 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc------c
Confidence 5788999999963 23478999999999999999999999999999999999999999999998654321 4
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+-++++||+. ++|..+||.+|+.+|...... .....+++++.++.++||..+ .++.|.+|||||||||+|||+|+
T Consensus 71 RPVSmlFQEn-NLFaHLtV~qNigLGl~P~Lk---L~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclv 145 (231)
T COG3840 71 RPVSMLFQEN-NLFAHLTVAQNIGLGLSPGLK---LNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLV 145 (231)
T ss_pred CChhhhhhcc-ccchhhhhhhhhcccCCcccc---cCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHh
Confidence 5699999997 589999999999998543221 234456778999999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
.+-+||+||||||+|||.-+.+++.++.++.. +.|++||||.++++.+++|+++++++|+|.+.+.
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999964 4899999999999999999999999999987653
No 61
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-54 Score=366.32 Aligned_cols=216 Identities=31% Similarity=0.461 Sum_probs=178.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999642 1469999999999999999999999999999999999999999999999988754221100001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++++|+||++. +++..|++||+.+........ .......+.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 81 ~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 81 RNKKLGFIYQFHH-LLPDFTALENVAMPLLIGKKS---VKEAKERAYEMLEKVGLEHR-INHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHhcEEEEecccc-cCCCCcHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 1257999999974 566789999998742111111 12233457789999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++. .||++++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999853 589999999999886 48999999999875
No 62
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-54 Score=381.89 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=184.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ...+
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-----~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-----KEVQ 74 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-----HHHH
Confidence 5899999999964 56999999999999999999999999999999999999999999999998874321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++||+||++. +++.+|+.||+.+.... ... .......++.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 75 ~~ig~~~q~~~-l~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 75 RNIGYLPEHNP-LYLDMYVREYLQFIAGI-YGM--KGQLLKQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred hceEEecCCCC-CCCCCcHHHHHHHHHHH-cCC--CHHHHHHHHHHHHHHCCCchH-hcCchhhCCHHHHHHHHHHHHHh
Confidence 67999999984 66778999999864211 111 112234467889999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++.++|||+++|++|+++..+
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADK 214 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999976799999999999999999999999999998754
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-54 Score=370.94 Aligned_cols=221 Identities=28% Similarity=0.406 Sum_probs=183.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK-LRKLR 78 (243)
T ss_pred CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHH-HHHHH
Confidence 5889999999962 246999999999999999999999999999999999999999999999998874321100 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC---C-c-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS---G-S-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
++++|+||++. +++..|+.+|+.++..... . . ........+++.++++.+++.+. .++++.+|||||||||+|
T Consensus 79 ~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 79 RRIGMIFQHYN-LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-AYQRADQLSGGQQQRVAI 156 (243)
T ss_pred hheEEEcCCCc-ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHH
Confidence 67999999985 5667899999987532110 0 0 00012234567888999999865 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.++|+++. + ++|||++|||++++.++||++++|++|+++..+
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 3 589999999999999999999999999998654
No 64
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3e-54 Score=374.40 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=184.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~ 81 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR-LYT 81 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhh-HHH
Confidence 457999999999964 46999999999999999999999999999999999999999999999998775322110 011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.++...... . ........+.++++.+++.+. +++++.+|||||||||+||||
T Consensus 82 ~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 82 VRKRMSMLFQSGA-LFTDMNVFDNVAYPLREHTQ-L-PAPLLHSTVMMKLEAVGLRGA-AKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HhhcEEEEecccc-cCCCCCHHHHHHHHHHHccC-C-CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 2457999999974 56678999999875211100 0 112233456788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999853 589999999999999999999999999998654
No 65
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-54 Score=363.58 Aligned_cols=210 Identities=39% Similarity=0.609 Sum_probs=176.6
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL----KELRRK 76 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH----HHHHhh
Confidence 4789999996422469999999999999999999999999999999999999999999999987743211 123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++...++..|+.+|+.++.... .. ........+.++++.+++.+. .++++.+|||||||||+|||||+.+
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENL-GL--PEEEIEERVEEALELVGLEGL-RDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999743355789999998752111 00 112233457788999999864 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|++|||||||+|||+.+++.+++.|+++.+ +.|||++|||++++..+||++++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999864 6899999999999999999999999885
No 66
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-54 Score=384.63 Aligned_cols=223 Identities=25% Similarity=0.345 Sum_probs=183.6
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~ 90 (245)
+|+++||++.|+... ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 699999999996422 369999999999999999999999999999999999998 48999999999885433211
Q ss_pred CCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkq 167 (245)
....+++.|+|+||++.. +.+.+++.+++.......... ..++..+++.++++.+||.+ ..+++++++|||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~--~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGG--NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 112234579999999853 445678887775532111011 12334556889999999964 2358999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++||+||||++||+.++.+++++|+++++ +.|+|+||||++.+..+||||++|.+|+++..+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999964 589999999999999999999999999998764
No 67
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.9e-54 Score=365.54 Aligned_cols=220 Identities=30% Similarity=0.400 Sum_probs=181.8
Q ss_pred cceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 35799999999996421 2589999999999999999999999999999999999999999999999877532211000
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++++++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~-l~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 84 KLRAKHVGFVFQSFM-LIPTLNALENVELPALLR-GE--SSRQSRNGAKALLEQLGLGKR-LDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHhheEEEEEcccc-cCCCcCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCChhhCCHHHHHHHHHH
Confidence 112357999999984 566789999998752111 11 112334567889999999875 6899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||+.+|++|||||||+|||+.+++.++++|++++ + +.|||++|||++++. .||++++|++|+++..
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999985 3 589999999999885 5999999999998753
No 68
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.6e-54 Score=364.59 Aligned_cols=217 Identities=25% Similarity=0.430 Sum_probs=182.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~-~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE-VPFLR 78 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhH-HHHHH
Confidence 4899999999942 246999999999999999999999999999999999999999999999998874321110 00124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.||+.++.... .. . .......+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~-~-~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 79 RQIGMIFQDHH-LLMDRTVYDNVAIPLIIA-GA-S-GDDIRRRVSAALDKVGLLDK-AKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred hheEEEecCcc-ccccccHHHHHHhHHHhc-CC-C-HHHHHHHHHHHHHHcCChhh-hhCCchhCCHHHHHHHHHHHHHH
Confidence 67999999984 566789999998752111 11 1 12233457788999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
.+|++|||||||++||+.+++.++++|.++++ +.|+|++|||++++..+||++++|++|+++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 99999999999999999999999999999864 58999999999999999999999999998754
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-54 Score=365.57 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCccCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-----KPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...... .
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~--~ 76 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD--V 76 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH--H
Confidence 578999999964 46999999999999999999999999999999999999 99999999999887432100 1
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC--CCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD--PHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~ 170 (245)
..++++++|+||++. ++ ..|+.||+.++.... .. ........++.++++.+|+.+. .++. +.+||||||||++
T Consensus 77 ~~~~~~i~~~~q~~~-~~-~~tv~e~l~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 77 LELRRRVGMVFQKPN-PF-PGSIYDNVAYGLRLH-GI-KLKEELDERVEEALRKAALWDE-VKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHhhEEEEecCch-hc-cccHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHcCCChH-HhccCCcccCCHHHHHHHH
Confidence 123467999999985 55 789999998753211 10 0111234567789999999864 4565 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||+.+++.++++|++++++.|||++|||++++..+||++++|++|+++..+.
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999998655899999999999999999999999999987653
No 70
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.8e-54 Score=364.35 Aligned_cols=222 Identities=33% Similarity=0.419 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-LRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh-hHHH
Confidence 588999999996421 2699999999999999999999999999999999999999999999999887532210 0112
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++.++|+||++.. +++..|+.+|+.++........ ........+.++++.+++.....++++.+||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 35689999999842 3456899999986521111010 111111223578899999532368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 99999999999999999999999999999999864 68999999999999999999999999998754
No 71
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-54 Score=362.38 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-----QKLRR 72 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-----HHHHh
Confidence 578999999964 46999999999999 99999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 73 RIGYLPQEFG-VYPNFTVREFLDYIAWLK-GI--PSKEVKARVDEVLELVNLGDR-AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred heEEecCCCc-ccccCCHHHHHHHHHHHh-CC--CHHHHHHHHHHHHHHCCCHHH-HhCchhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 566789999998742111 00 112234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999997678999999999999999999999999998764
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-54 Score=367.40 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=183.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE-LRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH-HHH
Confidence 58999999999642 126999999999999999999999999999999999999999999999998874321100 001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.++|+||++. +++.+|+.||+.++.... .. ........+.++++.+++.+. .++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~-~~~~~t~~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 80 ARRRIGMIFQHFN-LLSSRTVFENVALPLEIA-GV--PKAEIEERVLELLELVGLEDK-ADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHhheEEEccCcc-cCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hhcChhhCCHHHHHHHHHHHH
Confidence 2457999999985 566789999998752211 11 112234457889999999875 689999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999985 3 689999999999999999999999999998754
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.5e-54 Score=365.17 Aligned_cols=214 Identities=29% Similarity=0.415 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~---~~~~~ 75 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH---KRARL 75 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh---HHHhc
Confidence 578999999964 4699999999999999999999999999999999999999999999999876432211 11235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+.++.... .. ........+.++++.+++.+. .++.+.+||||||||++|||||+.
T Consensus 76 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 76 GIGYLPQEAS-IFRKLTVEENILAVLEIR-GL--SKKEREEKLEELLEEFHITHL-RKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred cEEEecCCcc-ccccCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 6999999984 666789999998753211 11 112233457789999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 215 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEG 215 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEe
Confidence 9999999999999999999999999999864 689999999999999999999999999998654
No 74
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-54 Score=375.95 Aligned_cols=220 Identities=31% Similarity=0.477 Sum_probs=185.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....
T Consensus 3 ~~~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~--~~~~ 79 (283)
T PRK13636 3 DYILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK--GLMK 79 (283)
T ss_pred CceEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc--hHHH
Confidence 458999999999963 2469999999999999999999999999999999999999999999999988742111 0112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++...++..|+.||+.++.... .. .......++.++++.+|+.+. .++++.+||||||||++||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KL--PEDEVRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hhCCcccCCHHHHHHHHHHHH
Confidence 34679999999753445689999998752211 11 122234467889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999864 689999999999999999999999999998764
No 75
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-54 Score=374.86 Aligned_cols=218 Identities=37% Similarity=0.572 Sum_probs=185.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++||++.|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~----~~ 78 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV----WD 78 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HH
Confidence 45799999999996433569999999999999999999999999999999999999999999999998753221 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++..+++..|+.||+.++.... .. ..+....++.++++.+||.+. .++++.+|||||||||+||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrv~lara 154 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GV--PREEMVERVDQALRQVGMEDF-LNREPHRLSGGQKQRVAIAGV 154 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC-CC--CHHHHHHHHHHHHHHcCChhh-hhCCcccCCHHHHHHHHHHHH
Confidence 24679999999743456789999998752211 11 122334567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++. .||++++|++|+++..+
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999864 589999999999986 59999999999998654
No 76
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.6e-54 Score=365.72 Aligned_cols=219 Identities=27% Similarity=0.457 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ....
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~ 75 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---HQIA 75 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH---HHHH
Confidence 36899999999964 469999999999999999999999999999999999999999999999987643211 1112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC----c-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG----S-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
++.++|+||++. +++..|+.||+.++...... . ..........+.++++.+|+.+. .++++.+|||||+|||+
T Consensus 76 ~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPT-VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccc-cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHH
Confidence 356999999984 66778999999875321100 0 00112234567889999999875 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence 99999999999999999999999999999999999976789999999999999999999999999998654
No 77
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-54 Score=382.98 Aligned_cols=224 Identities=28% Similarity=0.379 Sum_probs=186.1
Q ss_pred cceEEEEeEEEECCC--------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC
Q 035832 15 YSCLEVRDVSYRPPG--------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE 86 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 86 (245)
+++|+++||++.|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999962 124699999999999999999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 87 PNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
+.... ..++++|+||||++. .+.+.+++.+++.......... .......++.++++.+||.+..+++++++|||||
T Consensus 83 ~~~~~-~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 83 DPEAQ-KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL--SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CHHHH-HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 21111 113467999999984 2455679999886542111011 1223445688999999996433699999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++||+||||++||+.++.+++++|.++++ +.|||+||||++.+..+||+|++|++|+++..+
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999864 689999999999999999999999999998765
No 78
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-54 Score=369.12 Aligned_cols=206 Identities=33% Similarity=0.474 Sum_probs=181.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--------- 78 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE--------- 78 (257)
T ss_pred CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---------
Confidence 467999999999964 469999999999999999999999999999999999999999999998876421
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.++.. . ....++.++++.+++.+. .++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~-l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqrl~lara 147 (257)
T PRK11247 79 AREDTRLMFQDAR-LLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADR-ANEWPAALSGGQKQRVALARA 147 (257)
T ss_pred hhCceEEEecCcc-CCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 5666899999987521 0 012356788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++.+..
T Consensus 148 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 148 LIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 999999999999999999999999999999984 3 5899999999999999999999999999987653
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-54 Score=367.61 Aligned_cols=220 Identities=30% Similarity=0.417 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... ....++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA-LRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhH-HHHHHh
Confidence 4789999999642 46999999999999999999999999999999999999999999999998875321100 011245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCC---c--hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSG---S--IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.++|+||++. +++..|+.+|+.++...... . ........+++.++++.+++.+. .++++.+|||||||||+||
T Consensus 79 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFN-LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-AYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCc-ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-hCCCcccCCHHHHHHHHHH
Confidence 7999999984 56678999999875321000 0 00012234457788999999865 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999985 3 689999999999999999999999999998654
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.4e-54 Score=360.37 Aligned_cols=206 Identities=27% Similarity=0.438 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------IEALR 72 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch------HHHHh
Confidence 478999999964 4799999999999999999999999999999999999999999999999876421 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++.... . . ...++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~-~-----~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 73 RIGALIEAPG-FYPNLTARENLRLLARLL-G-I-----RKKRIDEVLDVVGLKDS-AKKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred hEEEecCCCc-cCccCcHHHHHHHHHHhc-C-C-----cHHHHHHHHHHcCCHHH-HhhhHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998752111 1 0 12356778999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999864 68999999999999999999999999998754
No 81
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-54 Score=388.40 Aligned_cols=209 Identities=29% Similarity=0.399 Sum_probs=178.1
Q ss_pred ECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecC
Q 035832 26 RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQF 105 (245)
Q Consensus 26 ~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~ 105 (245)
+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.......+++++||+||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 5653 46999999999999999999999999999999999999999999999999886532211111125689999999
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD 185 (245)
+. +|+.+||.||+.++.... .. ...+..+++.++++.+||+.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~~-l~~~~TV~eNi~~~~~~~-~~--~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 80 FA-LFPHMTILQNTSLGPELL-GW--PEQERKEKALELLKLVGLEEY-EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred Cc-CCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHhcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 85 778899999999863211 11 123345578899999999875 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 186 EPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 186 EPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++||+.+++.+.+.|.++.+ ++|||++|||++++..+||++++|++|+++..+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999863 589999999999999999999999999998654
No 82
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-54 Score=373.63 Aligned_cols=222 Identities=33% Similarity=0.546 Sum_probs=182.1
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 489999999996421 36999999999999999999999999999999999999999999999998875321100111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++...++..|+.+|+.++.... .. ........+.++++.+++.....++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GV--SQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 234679999999732334579999998752111 11 112233456788999999742368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999864 689999999999999999999999999998653
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=367.21 Aligned_cols=209 Identities=30% Similarity=0.431 Sum_probs=180.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------~ 69 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---------G 69 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---------C
Confidence 5899999999964 4699999999999999999999999999999999999999999999999876421 2
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
..++|+||++. +++..|+.+|+.++.... .. .......++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 70 ~~~~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 70 AERGVVFQNEG-LLPWRNVQDNVAFGLQLA-GV--EKMQRLEIAHQMLKKVGLEGA-EKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred CcEEEEeCCCc-cCCCCcHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hhCChhhCCHHHHHHHHHHHHHh
Confidence 35899999984 566789999998752111 11 112233467889999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++. + +.|||++|||++++..+||++++|+ +|+++.+.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 9999999999999999999999999999984 3 6899999999999999999999998 59987754
No 84
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=374.26 Aligned_cols=225 Identities=29% Similarity=0.422 Sum_probs=188.6
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C----CcceEEEcCccCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-P----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p----~~G~i~~~g~~~~~~~~~ 89 (245)
.|+++||+.+|... ...+++||||++++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++...+..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999998542 3569999999999999999999999999999999999998 4 579999999998766543
Q ss_pred CCCCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk 166 (245)
...+.+.++|+||||+|...++ -+++.+.+.-..... .....+++..+++.++|+.+|+.+. .++.||++||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h-~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH-GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 2234567889999999976554 457776665432111 1100234456678999999999863 46999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+||.||+.+|+|||+||||++||...+.+++++|+++++ +.++|+||||+..++++||||+||..|+++..+.
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999999999999999999999998765
No 85
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.3e-54 Score=367.47 Aligned_cols=219 Identities=29% Similarity=0.437 Sum_probs=183.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC----CC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS----PE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~----~~ 92 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7999999999964 46999999999999999999999999999999999999999999999998874321000 00
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
...++.++|+||++. +++..|+.||+.++....... ........+.++++.+|+... .++++.+|||||||||+||
T Consensus 81 ~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 81 RQLRQHVGFVFQNFN-LFPHRTVLENIIEGPVIVKGE--PKEEATARARELLAKVGLAGK-ETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred HHhhhhEEEEecCcc-cCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCcch-hhCChhhCChHHHHHHHHH
Confidence 123467999999984 566789999998742100011 112234457788999999865 6899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999865 689999999999999999999999999998653
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.6e-54 Score=362.21 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... ....++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~-~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRA-IPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH-HHHHHH
Confidence 4789999999643 46999999999999999999999999999999999999999999999998874321100 011246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++++. .++++.+||||||||++|||||+.
T Consensus 79 ~i~~v~q~~~-~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 79 KIGVVFQDFR-LLPDRNVYENVAFALEVT-GV--PPREIRKRVPAALELVGLSHK-HRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred heEEEecCch-hccCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCChhhcCHHHHHHHHHHHHHHc
Confidence 7999999984 666789999998752111 11 112234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.+++.+.+.|+++. ++.|||++||+++++..+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999985 468999999999999999999999999874
No 87
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-54 Score=389.19 Aligned_cols=221 Identities=29% Similarity=0.371 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCc----------------------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 16 SCLEVRDVSYRPPGTQ----------------------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~----------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
.+|+++||++.|+... ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 4689999999886531 127999999999999999999999999999999999999999
Q ss_pred ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 74 G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
|+|+++|+++...+.......+++++||+||++. +|+.+|+.||+.++.... .. ......+++.++++.+||.+.
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~-l~~~~Tv~enl~~~~~~~-~~--~~~~~~~~~~e~L~~~gL~~~- 157 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA-LMPHMTVLDNTAFGMELA-GI--NAEERREKALDALRQVGLENY- 157 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCChh-
Confidence 9999999987543211101112457999999985 677889999999863211 11 122334567889999999875
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.|.++.+ ++|||++|||++++..+||++++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence 7999999999999999999999999999999999999999999999999999853 58999999999999999999999
Q ss_pred EeCCeEEEec
Q 035832 232 MDMGGFLVEQ 241 (245)
Q Consensus 232 l~~G~i~~~~ 241 (245)
|++|+++..+
T Consensus 238 L~~G~i~~~g 247 (400)
T PRK10070 238 MQNGEVVQVG 247 (400)
T ss_pred EECCEEEecC
Confidence 9999998643
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-54 Score=359.15 Aligned_cols=208 Identities=24% Similarity=0.386 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--------~~~~ 70 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--------AARN 70 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------HHHc
Confidence 478999999964 469999999999999999999999999999999999999999999999987632 1245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++++. .++++.+||||||||++|||||+.
T Consensus 71 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 71 RIGYLPEERG-LYPKMKVIDQLVYLAQLK-GL--KKEEARRRIDEWLERLELSEY-ANKRVEELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred cEEEeccCCc-CCcCCcHHHHHHHHHHHc-CC--ChHHHHHHHHHHHHHcCChHH-HhCcHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998742111 11 112234567889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999999999999999999999999864 58999999999999999999999999998753
No 89
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-54 Score=382.31 Aligned_cols=226 Identities=23% Similarity=0.348 Sum_probs=183.7
Q ss_pred ceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~ 89 (245)
++|+++||+++|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999952 23469999999999999999999999999999999999997 5899999999987543221
Q ss_pred CCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCC--CCCc-hhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 90 SPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPR--QSGS-IQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
.....+++.|+||||++.. +.+.+|+.+++.+.... .... .....+...++.++++.+||.+. .+++++++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1111234579999999853 34567999998753110 0000 00012234567889999999742 25889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+.++.+++++|+++.+ +.|||+||||++++..+||++++|++|+++..+
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999864 589999999999999999999999999998764
No 90
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-54 Score=365.21 Aligned_cols=217 Identities=29% Similarity=0.436 Sum_probs=183.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ....++
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~ 76 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV--DERLIR 76 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh--hHHHHh
Confidence 5899999999964 469999999999999999999999999999999999999999999999988753211 111234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +++..|+.+|+.++...... . ........+.++++.+|+++. +++++.+||||||||++|||||+
T Consensus 77 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 77 QEAGMVFQQFY-LFPHLTALENVMFGPLRVRG-A-SKEEAEKQARELLAKVGLAER-AHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred hceEEEecccc-cCCCCcHHHHHHhHHHHhcC-C-CHHHHHHHHHHHHHHcCChHH-HhcChhhcCHHHHHHHHHHHHHh
Confidence 67999999984 56678999999875211111 1 112234467889999999865 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.++++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 218 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998654
No 91
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=371.37 Aligned_cols=217 Identities=33% Similarity=0.535 Sum_probs=184.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ..+
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI----REV 76 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHH
Confidence 579999999999642 359999999999999999999999999999999999999999999999988743211 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++++|+||++...++..|+.+|+.++.... . . ........+.++++.+++.+. .++.+.+||||||||++|||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-G-L-DEETVAHRVSSALHMLGLEEL-RDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHc-C-C-CHHHHHHHHHHHHHHCCChhH-hcCCcccCCHHHHHHHHHHHHH
Confidence 4679999999743345689999998752111 1 1 122234467889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+|||+++|++|+++..+
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999864 689999999999999999999999999998764
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.8e-53 Score=364.99 Aligned_cols=216 Identities=26% Similarity=0.402 Sum_probs=182.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++...+. .
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--D 76 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--c
Confidence 5899999999974 46999999999999999999999999999999999999998 9999999998753211 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCChHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkq 167 (245)
....++.++|+||++. +++ .|+.||+.++.... ... ........+.++++.+|+. +. +++++.+|||||||
T Consensus 77 ~~~~~~~i~~v~q~~~-~~~-~tv~e~l~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~q 151 (247)
T TIGR00972 77 VVELRRRVGMVFQKPN-PFP-MSIYDNIAYGPRLH-GIK-DKKELDEIVEESLKKAALWDEVKDR-LHDSALGLSGGQQQ 151 (247)
T ss_pred hHHHHhheEEEecCcc-cCC-CCHHHHHHhHHHhc-CCC-CHHHHHHHHHHHHHHcCCCcchhhH-hhCCcccCCHHHHH
Confidence 1123567999999984 555 99999998752111 100 1123344678889999997 54 68899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|+++||||||+|||+.++..++++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876689999999999999999999999999998654
No 93
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-53 Score=366.93 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=184.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~ 77 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG---HQI 77 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH---HHH
Confidence 458999999999964 479999999999999999999999999999999999999999999999988753221 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC------C--c----hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS------G--S----IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------~--~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 162 (245)
.+..++|+||++. +++.+|+.+|+.++..... . . ..........+.++++.+|+.+. .++++.+||
T Consensus 78 ~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVR-LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-ANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcc-cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-hhCChhhCC
Confidence 2346999999985 6677899999987521100 0 0 00111223457788999999875 799999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||||||++|||||+.+|++|||||||+|||+.+++.++++|.++++ +.|||++||+++++..+||++++|++|+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 58999999999999999999999999999865
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 236 ~ 236 (255)
T PRK11300 236 G 236 (255)
T ss_pred C
Confidence 4
No 94
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-53 Score=380.52 Aligned_cols=227 Identities=27% Similarity=0.361 Sum_probs=185.8
Q ss_pred CCcceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 87 (245)
..+++|+++||++.|+. +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++...+
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 34568999999999952 2346999999999999999999999999999999999999996 999999999886533
Q ss_pred CCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgG 164 (245)
.......++++|+||||++. .+.+.+|+.+++.......... ...+...++.++++.++|.+. .+++++++||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM--SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 21111122357999999984 2455689988886542111111 122334567888999999742 247899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||+|||||+.+|++||+||||++||+.++..++++|+++++ +.|+|+||||++.+..+||++++|++|+++..+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999964 689999999999999999999999999998764
No 95
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.7e-54 Score=360.97 Aligned_cols=212 Identities=30% Similarity=0.453 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~ 75 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH---ERARA 75 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH---HHHhc
Confidence 578999999964 4699999999999999999999999999999999999999999999999876432211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-CCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++.+|+.+|+.++..... .......+.++++.+ ++.+. .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 76 GIGYVPEGRR-IFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKER-RKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred CeEEeccccc-cCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhh-hhCchhhCCHHHHHHHHHHHHHh
Confidence 6999999984 6677899999987532111 111233456677777 57654 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998654
No 96
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-53 Score=370.76 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=181.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....++
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--~~~~~~ 76 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR--GLLALR 76 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC--CHHHHH
Confidence 5899999999964 469999999999999999999999999999999999999999999999998732111 011224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++...++..++.+|+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GV--PEAEITRRVDEALTLVDAQHF-RHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHhH-hcCCchhCCHHHHHHHHHHHHHH
Confidence 679999999753344568999987742111 11 112233457788999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
No 97
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-53 Score=371.18 Aligned_cols=216 Identities=31% Similarity=0.423 Sum_probs=180.9
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.......++++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 57788888864 4689999999999999999999999999999999999999999999999887532211111112357
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++|||||+.+
T Consensus 104 i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFA-LLPHRTVLENVAFGLEVQ-GV--PRAEREERAAEALELVGLEGW-EHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcc-cCCCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999984 666789999998752111 11 112233457789999999875 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||||+|||+.+++.++++|.++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g 243 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999985 3 589999999999999999999999999998653
No 98
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-53 Score=364.27 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=183.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-- 77 (250)
T PRK14247 2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-- 77 (250)
T ss_pred ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH--
Confidence 46999999999964 4699999999999999999999999999999999999974 79999999998753221
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
..+++.+||+||++. +++..|+.||+.++..... .........+.+.++++.+++.+ ..+++++.+|||||||
T Consensus 78 --~~~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 78 --IELRRRVQMVFQIPN-PIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred --HHHhccEEEEeccCc-cCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 123567999999985 5677899999987532111 00011233456788999999853 1358899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|+|++|||++++..+||++++|++|+++..+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999997653
No 99
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-53 Score=363.53 Aligned_cols=215 Identities=30% Similarity=0.405 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP----VELRR 75 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh----HHhhc
Confidence 4789999999742 469999999999999999999999999999999999999999999999987743211 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-ccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-TSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++..|+.||+.++... ... ........+.++++.+++.. ...++++.+|||||||||+|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 76 KIGYVIQQIG-LFPHMTVEENIALVPKL-LKW--PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred ceEEEccCcc-ccCCCcHHHHHHHHHHH-cCC--CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 7999999984 66678999999875211 111 11223446788999999985 1368999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999863 689999999999999999999999999998653
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-53 Score=361.31 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=180.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-----~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-----AAL 73 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-----hhh
Confidence 5889999999964 469999999999999999999999999999999999999999999999987743211 123
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.+|+.+..... .. ........+.++++.+|+.+. +++++.+||||||||++|||||+
T Consensus 74 ~~i~~~~q~~~-~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 74 ARLGVVFQQPT-LDLDLSVRQNLRYHAALH-GL--SRAEARERIAALLARLGLAER-ADDKVRELNGGHRRRVEIARALL 148 (236)
T ss_pred hhEEEeCCCCC-CcccCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHHh
Confidence 57999999984 556789999998752111 11 112233457788999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++.. ||++++|++|+++..+
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADG 214 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999863 6899999999999864 9999999999998654
No 101
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-53 Score=355.36 Aligned_cols=208 Identities=29% Similarity=0.443 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .++
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~------~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP------ADR 70 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH------hHc
Confidence 478999999964 22 39999999999999999999999999999999999999999999988753211 135
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... . ......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 71 ~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~-~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 71 PVSMLFQENN-LFAHLTVEQNVGLGLSPGLK-L--TAEDRQAIEVALARVGLAGL-EKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred cEEEEecccc-cCCCCcHHHHHhcccccccC-c--cHHHHHHHHHHHHHcCCHHH-HhCCcccCCHHHHHHHHHHHHHhc
Confidence 7999999985 66678999999876321111 0 11234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999999999999999999999853 68999999999999999999999999998754
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.3e-54 Score=358.66 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ......++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK--KNINELRQ 76 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc--hhHHHHHh
Confidence 478999999964 46999999999999999999999999999999999999999999999998764211 01112346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... . ........+.++++.+++.+. +++++.+||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~~~t~~e~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 77 KVGMVFQQFN-LFPHLTVLENITLAPIKVKG-M-SKAEAEERALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred cceEEecccc-cCCCCcHHHHHHhHHHHhcC-C-CHHHHHHHHHHHHHHcCCHhH-hhhCccccCHHHHHHHHHHHHHhc
Confidence 7999999985 56678999999875211111 1 112234467788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+||++++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999865 68999999999999999999999999874
No 103
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-53 Score=369.83 Aligned_cols=218 Identities=34% Similarity=0.553 Sum_probs=183.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....++
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~--~~~~~~ 77 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK--SLLEVR 77 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc--hHHHHH
Confidence 5899999999963 2469999999999999999999999999999999999999999999999988742111 011134
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.|+|+||++...++..|+.||+.++.... .. .......++.++++.+++.+. .++++.+|||||+||++|||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GL--SKEEVEKRVKEALKAVGMEGF-ENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCCchh-hcCChhhCCHHHHHHHHHHHHHh
Confidence 679999999743344679999998752111 11 122334567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.++..++++|.++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
No 104
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-53 Score=362.96 Aligned_cols=216 Identities=24% Similarity=0.333 Sum_probs=181.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~ 77 (237)
T PRK11614 3 KVMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT---AKI 77 (237)
T ss_pred ccEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---HHH
Confidence 458999999999964 469999999999999999999999999999999999999999999999987643211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++.++|+||++. +++..|+.+|+.++.... . .......+.++++.+ ++.+. .++++.+||||||||++|||
T Consensus 78 ~~~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 78 MREAVAIVPEGRR-VFSRMTVEENLAMGGFFA--E---RDQFQERIKWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHhCEEEeccCcc-cCCCCcHHHHHHHhhhcc--C---hhHHHHHHHHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHH
Confidence 2467999999984 666789999998753111 1 111233456667777 47654 57899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.++||++++|++|+++..+.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999864 6899999999999999999999999999987653
No 105
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-53 Score=369.00 Aligned_cols=219 Identities=32% Similarity=0.548 Sum_probs=184.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+||+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ..
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~----~~ 79 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LK 79 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC----HH
Confidence 45689999999999633357999999999999999999999999999999999999999999999998874321 11
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++++|+||++...++..|+.||+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK-KV--PPKKMKDIIDDLAKKVGMEDY-LDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCCcccCCHHHHHHHHHHH
Confidence 235679999999743456789999998752111 11 112234457889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++||+++++. .||++++|++|+++..+
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999864 389999999999985 79999999999997654
No 106
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.3e-53 Score=365.48 Aligned_cols=223 Identities=27% Similarity=0.370 Sum_probs=185.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-----
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----- 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 88 (245)
.+.+|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 2 ~~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 2 SENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CCccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 3557999999999964 569999999999999999999999999999999999999999999999987642110
Q ss_pred ---C-CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 89 ---N-SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 89 ---~-~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
. .....++++++|+||++. +++..|++||+.++....... .......++.++++.+|+.+...++++.+||||
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~-l~~~~sv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGL--SKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred ccccchHHHHHhhceEEEecCcc-cCCCCcHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 0 001123467999999985 566789999997642110011 122334567889999999864237889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999999998754
No 107
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-53 Score=364.03 Aligned_cols=221 Identities=28% Similarity=0.432 Sum_probs=182.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 87 (245)
..+|+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+
T Consensus 2 ~~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 2 ASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CCCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 35678999999999964 469999999999999999999999999999999999974 58999999998874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. .++ .|+.||+.++.... ... ......+++.++++.+++.+ ..+++++.+||||
T Consensus 80 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 80 V--DVVELRRRVGMVFQKPN-PFP-KSIFENVAYGLRVN-GVK-DKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred c--CHHHHhhcEEEEecCCC-CCc-CcHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 1 11123567999999984 454 69999998752111 110 11223456778899999843 1257889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998653
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-53 Score=367.12 Aligned_cols=220 Identities=27% Similarity=0.366 Sum_probs=184.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .
T Consensus 8 ~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~ 81 (265)
T PRK10575 8 SDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS----K 81 (265)
T ss_pred CCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH----H
Confidence 3457999999999964 469999999999999999999999999999999999999999999999987643211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.++|+||++. +++.+|+.+|+.++....... .........++.++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 82 AFARKVAYLPQQLP-AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-AHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhhheEEeccCCC-CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCCHHHHHHHHHH
Confidence 23467999999974 566789999998753211000 00011223457889999999864 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|.++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999999985 3 689999999999999999999999999997654
No 109
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-53 Score=367.67 Aligned_cols=219 Identities=31% Similarity=0.466 Sum_probs=184.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~ 79 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN----FE 79 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC----HH
Confidence 36689999999999753345899999999999999999999999999999999999999999999998874321 11
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++..+++..|+.+|+.++...... ........+.++++.+++.+. .++++.+||||||||++|||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV---PYDEMHRRVSEALKQVDMLER-ADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC---CHHHHHHHHHHHHHHcCCchh-hhCCcccCCHHHHHHHHHHH
Confidence 23467999999985356678999999875321111 112233457788999999875 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++.|+++.+ +.|||++||+++++.. ||++++|++|+++..+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999863 5899999999999875 9999999999998654
No 110
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-53 Score=364.06 Aligned_cols=214 Identities=29% Similarity=0.379 Sum_probs=182.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~----~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP----AELA 75 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----HHhh
Confidence 6899999999974 469999999999999999999999999999999999999999999999987643211 1224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|++||+.++....... .......+.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 76 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 76 RRRAVLPQHSS-LSFPFTVEEVVAMGRAPHGLS---RAEDDALVAAALAQVDLAHL-AGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred hheEEEccCCc-CCCCCCHHHHHHhhhcccCCC---cHHHHHHHHHHHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHh
Confidence 57999999985 456789999998753211110 11223457788999999865 69999999999999999999999
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 ------QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.+.++|+++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeC
Confidence 5999999999999999999999999999986 4 589999999999999999999999999998653
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-53 Score=368.99 Aligned_cols=216 Identities=30% Similarity=0.433 Sum_probs=182.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~~ 76 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---LQGIR 76 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc---HHHHH
Confidence 58999999999632 469999999999999999999999999999999999999999999999987743210 11234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.+||+||++...++..|+.+|+.++.... .. ......+.+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENL-CL--PPIEIRKRVDRALAEIGLEKY-RHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHCCCHHH-hcCCcccCCHHHHHHHHHHHHHH
Confidence 679999999853456789999998752111 11 122334567888999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.++..+++.|+++++ +.|||++|||++++ ..||++++|++|+++..+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEG 217 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 68999999999998 469999999999998654
No 112
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.4e-53 Score=368.02 Aligned_cols=222 Identities=29% Similarity=0.393 Sum_probs=182.7
Q ss_pred eEEEEeEEEECCCC-------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 89 (245)
||+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999631 35799999999999999999999999999999999999999999999999887532211
Q ss_pred CCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
. ...+++.++|+||++. .+++..|+.+|+.+....... . .......++.++++.+|+....+++++.+||||||||
T Consensus 82 ~-~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 82 Q-RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS-L-DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred H-HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 0 0112467999999973 244568999998764211100 0 1122344678899999996323689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998754
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-53 Score=361.98 Aligned_cols=219 Identities=25% Similarity=0.365 Sum_probs=182.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-CC-CCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-NN-SPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~-~~~~~ 94 (245)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 6999999999964 46999999999999999999999999999999999999999999999998763110 00 00011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.+........ ........+.++++.+|+... .++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~-~~~~~tv~e~i~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 80 LRRNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGL--SKDQALARAEKLLERLRLKPY-ADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHhheEEEecCcc-ccCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999985 666789999997531110111 112234467888999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.++|+++++ ++|+|++|||++++..+||++++|++|+++..+
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999864 689999999999999999999999999998654
No 114
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-53 Score=376.38 Aligned_cols=205 Identities=29% Similarity=0.418 Sum_probs=175.2
Q ss_pred EECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 25 YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ...++++||+||
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-----RKVRRSIGIVPQ 73 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH-----HHHHhhcEEecC
Confidence 35643 46999999999999999999999999999999999999999999999998874311 112467999999
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llll 184 (245)
++. +++.+|+.||+.+..... .. .......++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||
T Consensus 74 ~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 74 YAS-VDEDLTGRENLEMMGRLY-GL--PKDEAEERAEELLELFELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCC-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hCCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 984 667789999998742111 11 112234467889999999875 6999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 185 DEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 185 DEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||+.+++.++++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999864 689999999999999999999999999998754
No 115
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-53 Score=363.40 Aligned_cols=220 Identities=25% Similarity=0.374 Sum_probs=182.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
..+++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++....
T Consensus 3 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 3 KNEAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred CCCceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 45668999999999964 4699999999999999999999999999999999999997 4899999998764211
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCCh
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSG 163 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSg 163 (245)
. .....++.++|+||++. .+ ..|++||+.++.... ... ........+.++++.+++. +. +++++.+|||
T Consensus 81 ~--~~~~~~~~i~~v~q~~~-~~-~~tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 153 (254)
T PRK14273 81 F--DILELRRKIGMVFQTPN-PF-LMSIYDNISYGPKIH-GTK-DKKKLDEIVEQSLKKSALWNEVKDK-LNTNALSLSG 153 (254)
T ss_pred c--cHHHHhhceEEEeeccc-cc-cCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHhCCchhhHHH-HhCCcccCCH
Confidence 1 11123567999999985 44 589999998763111 110 1122345577888888873 33 5889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976789999999999999999999999999998754
No 116
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-53 Score=361.39 Aligned_cols=217 Identities=22% Similarity=0.363 Sum_probs=184.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ....
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~ 76 (241)
T PRK10895 2 ATLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL---HARA 76 (241)
T ss_pred ceEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHHH
Confidence 47999999999964 469999999999999999999999999999999999999999999999988743221 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.||+.+..... ... ........+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 77 ~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 77 RRGIGYLPQEAS-IFRRLSVYDNLMAVLQIR-DDL-SAEQREDRANELMEEFHIEHL-RDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HhCeEEeccCCc-ccccCcHHHHHhhhhhcc-ccc-CHHHHHHHHHHHHHHcCCHHH-hhcchhhCCHHHHHHHHHHHHH
Confidence 457999999984 566789999998752111 000 112234567889999999875 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.++++++++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 219 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHG 219 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeC
Confidence 999999999999999999999999999999864 689999999999999999999999999998654
No 117
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-53 Score=370.06 Aligned_cols=218 Identities=33% Similarity=0.542 Sum_probs=184.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 91 (245)
+++|+++|+++.|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++.....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~--- 79 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV--- 79 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH---
Confidence 45799999999996433469999999999999999999999999999999999999987 899999998743211
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...++++||+||++...++..|+.||+.++.... .. ......+++.++++.+||.+. .++++.+|||||+||++|
T Consensus 80 -~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 80 -WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-AV--PRPEMIKIVRDVLADVGMLDY-IDSEPANLSGGQKQRVAI 154 (282)
T ss_pred -HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC-CC--CHHHHHHHHHHHHHHCCChhH-hcCCcccCCHHHHHHHHH
Confidence 1124679999999853566789999998752211 11 122334567889999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++. +||++++|++|+++..+
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999863 689999999999984 79999999999998764
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-53 Score=366.33 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=184.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
...+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~ 77 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS----K 77 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH----H
Confidence 4557999999999974 469999999999999999999999999999999999999999999999987743211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.++|+||++. +++..|+.+|+.++....... ....+.....+.++++.+++.+. .++++.+||||||||++||
T Consensus 78 ~~~~~i~~v~q~~~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 78 EVARRIGLLAQNAT-TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-ADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhhheEEeeccCc-CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCChHHHHHHHHH
Confidence 12357999999985 566789999998752111000 00011223457789999999874 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++|||++++.++||++++|++|+++..+
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999864 589999999999999999999999999998654
No 119
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-53 Score=369.32 Aligned_cols=223 Identities=27% Similarity=0.440 Sum_probs=181.9
Q ss_pred ceEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC-CC
Q 035832 16 SCLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN-SP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~ 91 (245)
..|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... ..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996431 2599999999999999999999999999999999999999999999999886421000 01
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|+||++...++..|+.||+.++.... .. ........+.++++.+++.....++++.+||||||||++|
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-GE--NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 11235679999999743334569999998752111 11 1122334567889999995223689999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|+++.+ ++|||++||+++++..+||++++|++|+++..+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999853 689999999999999999999999999998654
No 120
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.7e-53 Score=357.39 Aligned_cols=208 Identities=37% Similarity=0.512 Sum_probs=174.2
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~~~ 69 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KERKR 69 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHHhh
Confidence 36899999964 46999999999999999999999999999999999999999999999997653 12457
Q ss_pred EEEEecCCCCC-CCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 99 VGIVFQFPERY-FVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 99 i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++|+||++... ++..|+.||+.++........ .......+++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-ADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-HhCCcccCCHHHHHHHHHHHHHH
Confidence 99999998521 134799999988632110000 0011233467889999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+|++|||||||+|||+.+++.+.+.|++++ ++.|||++|||++++..+||++++|++| ++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 9999999999999999999999999999986 4689999999999999999999999875 443
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-53 Score=364.72 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=182.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS----RQLA 75 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH----HHHh
Confidence 6999999999964 469999999999999999999999999999999999999999999999987643211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.++|+||++. +++..|+.+|+.++...... ...........+.++++.+++.+. .++++.+|||||+||++||||+
T Consensus 76 ~~i~~~~q~~~-~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHL-TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-ADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCC-CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-HcCCcccCCHHHHHHHHHHHHH
Confidence 57999999974 55667999999875211000 000011233457788999999875 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++++.++||++++|++|+++..+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~ 220 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEc
Confidence 999999999999999999999999999999864 689999999999999999999999999998653
No 122
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-53 Score=360.40 Aligned_cols=211 Identities=29% Similarity=0.455 Sum_probs=180.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~ 75 (241)
T PRK14250 2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV----IDL 75 (241)
T ss_pred ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh----HHh
Confidence 46999999999964 469999999999999999999999999999999999999999999999988753221 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. ++ ..|+.+|+.++... . .. ...++.++++.+++.....++++.+||||||||++|||||
T Consensus 76 ~~~i~~~~q~~~-~~-~~tv~e~l~~~~~~-~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 76 RRKIGMVFQQPH-LF-EGTVKDNIEYGPML-K-GE-----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hhcEEEEecCch-hc-hhhHHHHHhcchhh-c-Cc-----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 467999999984 44 47999999875211 1 10 1235678899999963236889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999863 689999999999999999999999999998653
No 123
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-53 Score=368.06 Aligned_cols=218 Identities=32% Similarity=0.488 Sum_probs=183.6
Q ss_pred ceEEEEeEEEECCCC----ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT----QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+||+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~--- 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN--- 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---
Confidence 579999999999642 2469999999999999999999999999999999999999999999999988743210
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++++||+||++...+...++.+|+.++.... .. ........+.++++.+|+.+. +++++.+||||||||++|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GI--PPEEIRERVDESLKKVGMYEY-RRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhc-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHH
Confidence 11235679999999853344568999998862211 11 122334567889999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|+++||||||+|||+.++..+++.|+++++ +.|||++|||++++.. ||++++|++|+++..+
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999999853 6899999999999875 9999999999998754
No 124
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-53 Score=351.26 Aligned_cols=216 Identities=28% Similarity=0.423 Sum_probs=186.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+..|+. .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+|+...+.. ...
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~---~r~ 76 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH---ERA 76 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH---HHH
Confidence 68999999999975 5799999999999999999999999999999999999999999999999999876432 223
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+..|+||||.-. .|+.+||.||+.++...... +......++++.+.|- |.+. .+++.++|||||||.++||||
T Consensus 77 r~Gi~~VPegR~-iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker-~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 77 RLGIAYVPEGRR-IFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKER-RNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred hCCeEeCccccc-chhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHH-hcCcccCCChHHHHHHHHHHH
Confidence 578999999974 78999999999987322111 1111112566677773 5554 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|+|||||.||-|.-.++|++.|+++++ +.||++|.++...+.+++||.++|++|+++.++.
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999984 4799999999999999999999999999998764
No 125
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.6e-54 Score=339.23 Aligned_cols=219 Identities=30% Similarity=0.423 Sum_probs=189.9
Q ss_pred ceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+|+++++++..+. +...||++|+|.|++||.++|+||||||||||+-+++||..|++|+|++.|+++.+........
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 37999999988754 2467999999999999999999999999999999999999999999999999998765544455
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+.+++|||||.+. +++.+|..||+..+....... .......+.++|+.+||.+. +..+|.+|||||+|||+|||
T Consensus 85 ~R~~~vGfVFQSF~-Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 85 LRARHVGFVFQSFH-LIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hhccceeEEEEeee-ccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHH
Confidence 56789999999985 788999999999864322111 12234467889999999985 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+..|++|+.||||.+||..+-+++.+++..+++ +.|+|+||||...+. -|+|.+.|.+|+++.+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeeecceeccC
Confidence 99999999999999999999999999999999874 589999999998764 6999999999999754
No 126
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.3e-53 Score=364.95 Aligned_cols=223 Identities=26% Similarity=0.319 Sum_probs=181.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-----CCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-----NDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +......
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 457999999999964 469999999999999999999999999999999999999999999999987 4322110
Q ss_pred CCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
.....+++.++|+||++. .++...|+.+|+.+........ ........+.++++.+++....+++.+.+||||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR--HYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 000012456999999974 2345578888886532110000 0112344577889999996423689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999854 689999999999999999999999999998654
No 127
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-53 Score=363.19 Aligned_cols=220 Identities=27% Similarity=0.394 Sum_probs=182.3
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
...++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++....
T Consensus 8 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 8 VAQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred ccceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 34568999999999964 4699999999999999999999999999999999999985 7999999998864311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. ++. .|++||+.++.... .. ........+.++++.+++.. ..+++++.+||||
T Consensus 86 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 158 (258)
T PRK14268 86 V--DVVELRKNVGMVFQKPN-PFP-MSIYDNVAYGPRIH-GA--NKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG 158 (258)
T ss_pred c--hHHHHhhhEEEEecCCc-cCc-ccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence 1 01123467999999984 454 89999998752111 11 11223345778899998841 1258899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999876789999999999999999999999999998654
No 128
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.3e-53 Score=381.72 Aligned_cols=205 Identities=29% Similarity=0.391 Sum_probs=173.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc----cCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY----NNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++...+.......++++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 33222111111122357999999985
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEP 187 (245)
+++..|+.||+.++.... .. ...+...++.++++.+||.+. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 117 -l~p~~Tv~eNi~~~~~~~-g~--~~~~~~~~a~e~le~vgL~~~-~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 117 -LMPWLTVEENVAFGLEMQ-GM--PEAERRKRVDEQLELVGLAQW-ADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred -CCCCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 677799999999873211 11 122334567889999999875 7999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 188 LAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++||+.++.++++.|.++.+ ++|||++|||++++.++||++++|++|+++..+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g 247 (382)
T TIGR03415 192 FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHG 247 (382)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999864 589999999999999999999999999998754
No 129
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-53 Score=361.86 Aligned_cols=220 Identities=28% Similarity=0.408 Sum_probs=182.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~-- 78 (253)
T PRK14267 3 FAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV-- 78 (253)
T ss_pred ceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--
Confidence 47999999999964 4699999999999999999999999999999999999987 49999999998742111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....++++++|+||++. +++..|+.||+.++.... ............+.++++.+++.. ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPN-PFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCc-cCCCCcHHHHHHHHHHhc-CccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 01123567999999984 666789999998752111 100011223345778889998842 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998653
No 130
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-52 Score=364.08 Aligned_cols=222 Identities=27% Similarity=0.401 Sum_probs=183.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
..+++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...+
T Consensus 15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 34568999999999964 4699999999999999999999999999999999999975 8999999998874321
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. .++ .|+.||+.++.... ............+.++++.+++.+. .+++++.+||||
T Consensus 93 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 93 L--DVVELRARVGMVFQKPN-PFP-KSIYENVAYGPRIH-GLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred c--chHHHhhceEEEecCCC-CCC-CcHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 1 11123567999999985 444 59999998753111 1000112234457788999999531 257889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999876789999999999999999999999999998654
No 131
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=376.89 Aligned_cols=209 Identities=31% Similarity=0.537 Sum_probs=179.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||++ ||+++|++ + .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++............+
T Consensus 1 ~l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 5888 99999964 2 23 899999999999999999999999999999999999999999998874321110111224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +|+.+|+.+|+.++... ....++.++++.+|+.+. .++++.+|||||||||+|||||+
T Consensus 76 ~~i~~v~q~~~-l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDAR-LFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPL-LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcc-cCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchh-hhCCcccCCHHHHHHHHHHHHHH
Confidence 67999999984 67789999999886311 123457788999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999864 589999999999999999999999999998654
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.1e-52 Score=364.29 Aligned_cols=221 Identities=28% Similarity=0.365 Sum_probs=182.1
Q ss_pred cceEEEEeEEEECCCC-------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPGT-------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
++||+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 4579999999999521 246999999999999999999999999999999999999999999999998874211
Q ss_pred CCCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
...+++.++|+||++.. +++..|+.+++.+........ ......+.+.++++.+++.....++++.+||||||
T Consensus 82 ----~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 82 ----YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL--EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQK 155 (267)
T ss_pred ----hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence 11234579999999742 345678999987642111110 11223346788999999953235888999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+|||||+.+|++|||||||++||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999853 689999999999999999999999999998654
No 133
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6e-53 Score=388.20 Aligned_cols=224 Identities=35% Similarity=0.435 Sum_probs=190.9
Q ss_pred CcceEEEEeEEEECCC---------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPG---------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
..++++++||++.|.. +...+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~- 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL- 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-
Confidence 5778999999999973 124689999999999999999999999999999999999999999999999872
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..... .....++++-++||+|...+ +.+||.+.+...+...... . ..+.++++.++++.++|....++++|++|||
T Consensus 356 ~~~~~-~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~-~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG 432 (539)
T COG1123 356 DLTGG-ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG-S-GAERRARVAELLELVGLPPEFLDRYPHELSG 432 (539)
T ss_pred ccccc-hhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc-c-hHHHHHHHHHHHHHcCCCHHHHhcCchhcCc
Confidence 22211 12224578999999996533 5689999998753221111 1 2334557899999999987558999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||++|||||+.+|++|++|||||+||+..+.++.++|+++++ +.|.||||||+..+..+||||++|++|+|+..+
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999975 589999999999999999999999999999876
No 134
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.1e-52 Score=350.95 Aligned_cols=209 Identities=30% Similarity=0.436 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++++|+++.|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA------PYQR 70 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC------hhcc
Confidence 478999999952 468999999999999999999999999999999999999999999998874311 1346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++.+|+.||+.++...... .......++.++++.+++.+. .++.+.+||||||||++|||||+.
T Consensus 71 ~i~~v~q~~~-~~~~~t~~en~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 71 PVSMLFQENN-LFAHLTVRQNIGLGLHPGLK---LNAEQQEKVVDAAQQVGIADY-LDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ceEEEeccCc-cCCCCcHHHHHHhHhhccCC---ccHHHHHHHHHHHHHcCcHHH-hhCCcccCCHHHHHHHHHHHHHhc
Confidence 7999999985 66678999999865221111 011223457788999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||++||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999999999999999999999863 589999999999999999999999999998765
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.1e-53 Score=361.98 Aligned_cols=218 Identities=28% Similarity=0.398 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-------C--
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-------N-- 88 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------~-- 88 (245)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ .
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999964 46999999999999999999999999999999999999999999999998874321 0
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
......+++.++|+||++. +++..|+.+|+.++....... ........+.++++.+|+.+. .++.+.+|||||+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~-~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFN-LFPHKTVLDNVTEAPVLVLGM--ARAEAEKRAMELLDMVGLADK-ADHMPAQLSGGQQQR 154 (252)
T ss_pred hhHHHHHhhCeEEEecCcc-cCCCCcHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCChhH-hhcChhhcCHHHHHH
Confidence 0000112467999999984 666789999998742110011 112233467889999999875 689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.++..++++|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999853 689999999999999999999999999998654
No 136
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-52 Score=357.97 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP----AWLRR 76 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH----HHHhh
Confidence 47899999996433569999999999999999999999999999999999999999999999987643211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.||+.++... ......... ....+.++++.+ ++... +++++.+|||||||||+||||
T Consensus 77 ~i~~~~q~~~-~~-~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 77 QVGVVLQENV-LF-NRSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTI-VGEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred cEEEEcCCch-hc-cchHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccch-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999974 33 57999999875321 111000111 111234556666 56654 588999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.+.+.|+++.++.|||++|||++++. .||++++|++|+++..+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999876789999999999985 69999999999998754
No 137
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-52 Score=354.19 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=179.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .+
T Consensus 1 ~l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~------~~ 70 (232)
T PRK10771 1 MLKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP------SR 70 (232)
T ss_pred CeEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh------hh
Confidence 5899999999963 2 249999999999999999999999999999999999999999999987643211 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.||+.+++..... ..+....++.++++.+|+++. .++++.+||||||||++||||++
T Consensus 71 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 71 RPVSMLFQENN-LFSHLTVAQNIGLGLNPGLK---LNAAQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ccEEEEecccc-cccCCcHHHHHhcccccccC---CCHHHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHHHHHHHHh
Confidence 57999999984 66678999999875321111 011234567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
No 138
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.9e-53 Score=357.56 Aligned_cols=211 Identities=29% Similarity=0.405 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 75 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH---ERARA 75 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH---HHHHh
Confidence 578999999974 4699999999999999999999999999999999999999999999999887532211 11235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++..|+.+|+.++.... .. . ......++++.++ +... .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~---~--~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 76 GIAYVPQGRE-IFPRLTVEENLLTGLAAL-PR---R--SRKIPDEIYELFPVLKEM-LGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred CeEEeccCCc-ccCCCcHHHHHHHHHHhc-Cc---c--hHHHHHHHHHHHHhHHHH-hhCChhhCCHHHHHHHHHHHHHh
Confidence 7999999985 666789999998753211 11 0 1123456677776 5554 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 589999999999999999999999999998754
No 139
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-52 Score=351.71 Aligned_cols=210 Identities=36% Similarity=0.557 Sum_probs=175.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+++ ||+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++............++
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 556 99999975 334 99999999 9999999999999999999999999999999999987642111000112346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+.++.... . ......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 76 ~i~~~~q~~~-~~~~~t~~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYA-LFPHLNVRENLAFGLKRK--R---NREDRISVDELLDLLGLDHL-LNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCc-cCCCCCHHHHHHHHHhhC--C---HHHHHHHHHHHHHHcCCHhH-hhcCcccCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998752111 1 12233457889999999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999853 58999999999999999999999999998764
No 140
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-52 Score=359.80 Aligned_cols=220 Identities=26% Similarity=0.385 Sum_probs=182.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
...+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~- 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK- 86 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc-
Confidence 4557999999999964 469999999999999999999999999999999999986 58999999998874211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
......+++++|+||++. ++. .|+++|+.++....... ......+++.++++.+++.. ...++++.+|||||
T Consensus 87 -~~~~~~~~~i~~~~q~~~-~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 87 -QDIALLRAKVGMVFQKPT-PFP-MSIYDNIAFGVRLFEKL--SRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred -cchHHHhcceEEEecCCc-cCc-CcHHHHHhhhHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 111123567999999984 444 89999998752211011 11223345778899999742 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999976789999999999999999999999999998754
No 141
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-52 Score=357.58 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=181.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
++++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 1 ~~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~---- 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV---- 74 (246)
T ss_pred CceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH----
Confidence 36899999999974 469999999999999999999999999999999999984 689999999998753221
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 169 (245)
...++.++|+||++. .|+ .|++||+.++.... ...........++.++++.+++.+ ...++++.+||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~-l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 75 VALRKNVGMVFQQPN-VFV-KSIYENISYAPKLH-GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred HHHhhhEEEEecCCc-ccc-ccHHHHhhhHHhhc-CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH
Confidence 123567999999985 454 79999998752111 100011223345778899999952 125788999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999876789999999999999999999999999998754
No 142
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.9e-52 Score=374.03 Aligned_cols=209 Identities=33% Similarity=0.520 Sum_probs=177.5
Q ss_pred eEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEE
Q 035832 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGI 101 (245)
Q Consensus 22 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 101 (245)
||+++|++ +. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++............+++++|
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999964 33 5 99999999999999999999999999999999999999999999987532110011123567999
Q ss_pred EecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 035832 102 VFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 102 v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~l 181 (245)
+||++. +|+.+|+.||+.++.... . ......++.++++.++|.+. .++++.+|||||||||+|||||+.+|++
T Consensus 80 v~q~~~-l~~~~tv~enl~~~~~~~--~---~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEAR-LFPHLSVRGNLRYGMKRA--R---PSERRISFERVIELLGIGHL-LGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCc-cCCCCcHHHHHHHHhhcc--C---hhHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999984 677889999999863211 1 11223457889999999875 7999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 214 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 999999999999999999999999864 589999999999999999999999999998654
No 143
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=360.69 Aligned_cols=222 Identities=22% Similarity=0.302 Sum_probs=183.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCC-CC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNN-SP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~-~~ 91 (245)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++...... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 3 TIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred cEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 47999999999964 46999999999999999999999999999999999999986 49999999877432100 00
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-----hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-----IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
....+++++|+||++. +++.+|+.+|+.++....... ..........+.++++.+|+.+. .++.+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFN-LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-AHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccc-cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-HhCCccccCHHHH
Confidence 0112457999999985 566789999998753110000 00012234467889999999864 6999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999863 589999999999999999999999999997654
No 144
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-52 Score=363.06 Aligned_cols=216 Identities=34% Similarity=0.515 Sum_probs=182.8
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~----~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV----WNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH----HHH
Confidence 79999999999742 2358999999999999999999999999999999999999999999999988753211 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++...++..|+.+|+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++|||||
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQ-GI--PREEMIKRVDEALLAVNMLDF-KTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHHHHHH
Confidence 5679999999743456789999998752111 11 122233467888999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|.++.+ +.|||++||+++++. .||++++|++|+++..+
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEA 222 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999864 689999999999986 69999999999998654
No 145
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-52 Score=391.73 Aligned_cols=221 Identities=24% Similarity=0.316 Sum_probs=185.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+. .
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~ 77 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI---R 77 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH---H
Confidence 468999999999964 4699999999999999999999999999999999999996 89999999988743211 0
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..+++.+||+||++. +++.+|++||+.++................++.++++.+++.+. .++++.+|||||||||+||
T Consensus 78 ~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELA-LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-PATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccc-cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHHHH
Confidence 112456999999984 66778999999886321100000112234467889999999865 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||++||+.++..++++|.++.+ +.|||++|||++++..+||++++|++|+++.++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999864 6899999999999999999999999999987643
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.2e-52 Score=359.11 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----RARAR 75 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH----HHHhh
Confidence 689999999964 469999999999999999999999999999999999999999999999987743211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. .++..|+.+|+.++....... .........++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSD-TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-ADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCc-cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHh
Confidence 7999999984 556789999998752111000 00011223457889999999864 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 219 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEec
Confidence 99999999999999999999999999999864 589999999999999999999999999998754
No 147
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.4e-52 Score=390.15 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=185.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ...+
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP---KSSQ 77 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHHH
Confidence 57999999999964 469999999999999999999999999999999999999999999999988743211 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++|+||++. +++.+|++||+.++...... ..........++.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 78 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 78 EAGIGIIHQELN-LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-SDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred hCCEEEEEcchh-ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-ccCchhhCCHHHHHHHHHHHH
Confidence 457999999984 67788999999886321100 000112234467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
No 148
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-52 Score=359.31 Aligned_cols=220 Identities=25% Similarity=0.383 Sum_probs=180.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+.
T Consensus 18 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 18 KEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 3457999999999964 469999999999999999999999999999999999865 789999999998743211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....+++.++|+||++. +++ .|+++|+.++.... .. .........+.++++.+++.. ..+++++.+|||||
T Consensus 96 --~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 96 --NVVNLRREIGMVFQKPN-PFP-KSIYNNITHALKYA-GE-RRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred --cHHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHH
Confidence 11123567999999984 444 59999998752111 10 011122344667788888742 12578999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999976789999999999999999999999999998764
No 149
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-52 Score=355.75 Aligned_cols=220 Identities=26% Similarity=0.394 Sum_probs=180.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CC---CcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KP---TSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p---~~G~i~~~g~~~~~~~~ 88 (245)
..++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.....
T Consensus 2 ~~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 2 TEPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred CCceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 3458999999999964 46999999999999999999999999999999999995 36 59999999988743111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....+++.++|+||++. .+. .|+.||+.++.... .. .........+.++++.+++.. ...++++.+|||||
T Consensus 80 --~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 80 --DTVDLRKEIGMVFQQPN-PFP-MSIYENVVYGLRLK-GI-KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred --chHhhhhcEEEEecCCc-cCc-CcHHHHHHHHHHHc-CC-CcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 11123567999999984 444 89999998752111 11 111223345677888888742 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876689999999999999999999999999998754
No 150
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4e-52 Score=355.38 Aligned_cols=218 Identities=23% Similarity=0.308 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...... ...
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~---~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD---ERA 75 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH---Hhh
Confidence 578999999964 46999999999999999999999999999999999995 79999999999877432211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--c--hhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--S--IQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLA 170 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ 170 (245)
+..++|+||++. .++..|+.+|+.+....... . ........+++.++++.+++.....++++. +||||||||++
T Consensus 76 ~~~i~~v~q~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 76 RAGLFLAFQYPE-EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred ccceEeeecccc-ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 345999999985 56778999998764211000 0 001122334678899999997423577887 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999864 68999999999999988 8999999999998654
No 151
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-52 Score=354.11 Aligned_cols=215 Identities=29% Similarity=0.425 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL----ASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH----HHHHh
Confidence 47899999997532368999999999999999999999999999999999999999999999987643211 11246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|++||+.++.... ....... .....+.++++.+ ++... .++++.+||||||||++||||
T Consensus 77 ~i~~~~q~~~-~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 77 QIGLVSQDVF-LF-NDTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTV-IGERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred hEEEeCCCCe-ec-cccHHHHhhccCCCC-CHHHHHHHHHHcCcHHHHHhcccCccee-eccCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 579999998863211 1101011 1111245666666 67664 688899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.+.|+++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERG 218 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeC
Confidence 99999999999999999999999999999998767899999999999875 9999999999997653
No 152
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-52 Score=357.01 Aligned_cols=221 Identities=27% Similarity=0.403 Sum_probs=182.1
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~ 87 (245)
+..++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++...+
T Consensus 8 ~~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred cCCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 45668999999999964 469999999999999999999999999999999999997 3 5999999999874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.+||+||++. .++ .|++||+.++... .... .......++.++++.+++.+ ..+++++.+||||
T Consensus 86 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~G 159 (259)
T PRK14274 86 V--DLVELRKNIGMVFQKGN-PFP-QSIFDNVAYGPRI-HGTK-NKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGG 159 (259)
T ss_pred c--CHHHHhhceEEEecCCc-ccc-cCHHHHHHhHHHh-cCCC-CHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 1 11123467999999985 444 5999999875211 1100 11223345677888888853 1258899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|+++||||||+|||+.++..++++|.++.++.|+|++||+++++..+||++++|++|+++..+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998754
No 153
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-52 Score=354.93 Aligned_cols=218 Identities=28% Similarity=0.467 Sum_probs=179.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC---CCC--CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL---SKP--TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl---~~p--~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++.....
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~-- 77 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV-- 77 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--
Confidence 57999999999964 4699999999999999999999999999999999997 455 58999999988753211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. .........+.++++.+++.+ ..+++++.+|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~-~~~-~tv~~nl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 78 QVDELRKNVGMVFQRPN-PFP-KSIFENVAYGLRVN-GV-KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCc-cCc-ccHHHHHHHHHHHc-CC-CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 01123567999999984 444 69999998752111 10 011223345778899999853 1257889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++.++||++++|++|+++..+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999976789999999999999999999999999998754
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-51 Score=354.26 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=181.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~~~~~ 91 (245)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++......
T Consensus 4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~-- 79 (252)
T PRK14256 4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD-- 79 (252)
T ss_pred EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC--
Confidence 5899999999964 469999999999999999999999999999999999986 4 689999999987432111
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
....++.++|+||++. +++..|+.||+.++.... ... ........+.++++.+++.. ..+++.+.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 80 PVSIRRRVGMVFQKPN-PFPAMSIYDNVIAGYKLN-GRV-NRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred hHHhhccEEEEecCCC-CCCcCcHHHHHHhHHHhc-CCC-CHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 1123567999999985 666789999998752211 100 11223345778899999853 12578899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999976789999999999999999999999999998654
No 155
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.2e-52 Score=350.32 Aligned_cols=206 Identities=29% Similarity=0.436 Sum_probs=178.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--------~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--------DLH 70 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--------ccc
Confidence 578999999964 4699999999999999999999999999999999999999999999999875321 124
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+++|+.++.... .. ....+.++++.+++++. .++++.+|||||+||++||||++.
T Consensus 71 ~~~~~~q~~~-~~~~~t~~~~~~~~~~~~-~~------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 71 KIGSLIESPP-LYENLTARENLKVHTTLL-GL------PDSRIDEVLNIVDLTNT-GKKKAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred cEEEEcCCCC-ccccCCHHHHHHHHHHHc-CC------CHHHHHHHHHHcCCcHH-HhhhHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998642110 10 12246778999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 207 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGK 207 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999864 6899999999999999999999999999987543
No 156
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-52 Score=356.56 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=180.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... .
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~ 79 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--D 79 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--C
Confidence 6999999999964 4699999999999999999999999999999999999974 79999999987742111 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.+|+.++.... ... ......+.+.++++.+++.. ...++++.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 80 PVAVRRTIGMVFQRPN-PFPTMSIRDNVVAGLKLN-GVR-NKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred hHHHhcceEEEccccc-cCCCCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1123567999999974 566789999998752111 100 11223445778899998841 13588999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe------CCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD------MGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~------~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|+ +|+++..+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 99999999999999999999999999999999999998766899999999999999999999997 79998654
No 157
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-52 Score=383.73 Aligned_cols=225 Identities=29% Similarity=0.409 Sum_probs=190.5
Q ss_pred ceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC----cceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT----SGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i~~~g~~~~~~~~~ 89 (245)
++|+++||++.|... ...+++||||++++||++||+|+|||||||+.++|.|++++. +|+|.|+|+++.+....
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999998643 235999999999999999999999999999999999999987 89999999988766554
Q ss_pred CCCCCCCCcEEEEecCCCCCCCc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC-CCCCCCCChHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKR 167 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkq 167 (245)
.....+.++|+|+||+|...+++ +|+.+.+.-.... ... ....+.++++.++++.+||++... +++|++|||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~-h~~-~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL-HGK-GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH-hcc-ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 44455678899999999777766 6776665543111 111 114456678899999999987532 3599999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+||+||+.+|++||+||||++||+..+.+|+++|+++.+ ++++|+||||+..++++||||++|++|+++..+.
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999973 5899999999999999999999999999998764
No 158
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-52 Score=389.28 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=185.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ..
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---~~ 77 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK---LA 77 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH---HH
Confidence 368999999999964 4699999999999999999999999999999999999999999999999887532210 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCC---CCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ---SGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
++++++|+||++. +++..||.||+.++.... .... ........++.++++.+|+.+. .++++.+|||||||||+
T Consensus 78 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELS-VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-LDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeeccc-ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHH
Confidence 2356999999984 567789999998753210 0100 0112234567889999999875 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g 227 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeec
Confidence 99999999999999999999999999999999999864 689999999999999999999999999997654
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.8e-52 Score=356.76 Aligned_cols=222 Identities=27% Similarity=0.315 Sum_probs=178.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-----CCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-----NDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~ 90 (245)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 47999999999964 468999999999999999999999999999999999999999999999876 43211100
Q ss_pred CCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
....+++.++|+||++.. .+...++.+|+.+........ . .......+.++++.+++....+++.+.+|||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR-H-YGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 000123569999999742 234568888886431100000 0 1122356788999999963236899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||++||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999975 3 689999999999999999999999999998654
No 160
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.9e-52 Score=352.08 Aligned_cols=215 Identities=27% Similarity=0.387 Sum_probs=177.2
Q ss_pred CcceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..++|+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH---- 83 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH----
Confidence 35679999999999642 2369999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ-LKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
..+++.++|+||++. ++ ..|+.+|+.++.... .... ........+.++++.+ |+... .++++.+|||||||||
T Consensus 84 ~~~~~~i~~~~q~~~-l~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~-~~~~~~~LSgG~~qrv 159 (226)
T cd03248 84 KYLHSKVSLVGQEPV-LF-ARSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTE-VGEKGSQLSGGQKQRV 159 (226)
T ss_pred HHHHhhEEEEecccH-HH-hhhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccch-hhcCCCcCCHHHHHHH
Confidence 123467999999984 44 579999998763221 1111 0111122356778888 78765 6889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|||||+.+|++|||||||++||+.+++.+.++|+++.++.|||++|||++++. .||++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999876689999999999986 5999999999874
No 161
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-51 Score=354.10 Aligned_cols=219 Identities=26% Similarity=0.386 Sum_probs=181.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.....
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~- 78 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV- 78 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc-
Confidence 368999999999964 4699999999999999999999999999999999999875 79999999998743211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. ........++.++++.+++.+ ...++++.+||+|||
T Consensus 79 -~~~~~~~~i~~~~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 79 -DVVELRKRVGMVFQKPN-PFP-MSIYDNVAYGPRIH-GI-KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred -cHHHHHhheEEEecCCC-cCC-CcHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 11122567999999984 444 89999998752111 10 011223345677889998742 125889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||+|||+.++..++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999876789999999999999999999999999998754
No 162
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.1e-52 Score=349.91 Aligned_cols=206 Identities=32% Similarity=0.495 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++..... ...++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADLRR 78 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH----HHHHh
Confidence 78999999996433469999999999999999999999999999999999999999999999987643211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCC-----------CCCCCChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDK-----------DPHSLSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqk 166 (245)
.++|+||++. ++ ..|+.||+.++... .. ...+.++++.+++.+. +++ .+.+||||||
T Consensus 79 ~i~~~~q~~~-~~-~~tv~e~l~~~~~~--~~-------~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 79 NIGYVPQDVT-LF-YGTLRDNITLGAPL--AD-------DERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred hEEEeCCCCc-cc-cchHHHHhhcCCCC--CC-------HHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHH
Confidence 7999999984 44 46999999875221 10 1123456666677543 344 3479999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||++||||++.+|++|||||||+|||+.+++.++++|++++++.|||++|||++++ .+||++++|++|+++..
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999987568999999999986 69999999999998753
No 163
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-51 Score=387.33 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=184.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~ 83 (510)
T PRK15439 9 PPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP---AKA 83 (510)
T ss_pred CceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHH
Confidence 357999999999964 469999999999999999999999999999999999999999999999987743211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++. +++..||.||+.++... .....+++.++++.+++.+. +++++.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 84 HQLGIYLVPQEPL-LFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLD-LDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HhCCEEEEeccCc-cCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCcc-ccCChhhCCHHHHHHHHHHHH
Confidence 2346999999985 67788999999886321 11233467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g 222 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999864 689999999999999999999999999998654
No 164
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-51 Score=353.92 Aligned_cols=218 Identities=26% Similarity=0.439 Sum_probs=180.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~-- 78 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM-- 78 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc--
Confidence 47999999999964 469999999999999999999999999999999999997 479999999988643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|++|++. ++ ..|+.||+.++....... ........+.++++.+++.. ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~-~~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 79 DLVELRKEVGMVFQQPT-PF-PFSVYDNVAYGLKIAGVK--DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred hHHHhhccEEEEecCCc-cC-CCcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 11123567999999984 44 479999998753211100 11122345677888899841 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
No 165
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-51 Score=355.73 Aligned_cols=221 Identities=25% Similarity=0.404 Sum_probs=183.0
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 87 (245)
...++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 34568999999999964 579999999999999999999999999999999999996 58999999998874211
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. .....++.++|+||++. +++ .|+.+|+.++.... .. .........+.++++.+++.+ ..+++++.+||||
T Consensus 94 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~eni~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 94 I--NVYEMRKHIGMVFQRPN-PFA-KSIYENITFALERA-GV-KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG 167 (267)
T ss_pred C--ChHHHhcceEEEecCCc-ccc-ccHHHHHHhHHHhc-CC-CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence 1 01123567999999974 444 69999998753211 11 012223445778899998842 1358899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998754
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-51 Score=357.91 Aligned_cols=211 Identities=22% Similarity=0.384 Sum_probs=174.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999964 469999999999999999999999999999999999987 689999999987642111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
. ...++++++|+||++. ++. .|+.||+.++.... ... ....+.+.++++.+++.. ..+++++.+|||||
T Consensus 88 ~--~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~~---~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 88 D--PVEVRRRIGMVFQQPN-PFP-KSIYENIAFGARIN-GYT---GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred C--HHHHhhceEEEccCCc-cch-hhHHHHHhhhhhhc-CCc---HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 0 1123467999999984 454 59999998763211 111 112334567788887631 13588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||++|||||+.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999999999987678999999999999999999999996
No 167
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-51 Score=386.43 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~---~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST---TAAL 77 (501)
T ss_pred ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH---HHHH
Confidence 58999999999964 469999999999999999999999999999999999999999999999988743211 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++..|+.+|+.++...............+++.++++.+++... .++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 78 AAGVAIIYQELH-LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-PDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred hCCEEEEEechh-ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-cCCchhhCCHHHHHHHHHHHHH
Confidence 467999999984 66778999999986321110100122334567889999999864 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|++|||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999864 68999999999999999999999999999764
No 168
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=358.84 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=181.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--------cceEEEcCccCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--------SGSINIRGYNNDGEPN 88 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--------~G~i~~~g~~~~~~~~ 88 (245)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.....
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 5899999999964 46999999999999999999999999999999999999998 9999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
..+++.++|+||++. .++..|+.||+.++...... .........+.+.++++.+++.+. .++++.+|||||||
T Consensus 79 ----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~q 152 (272)
T PRK13547 79 ----PRLARLRAVLPQAAQ-PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-VGRDVTTLSGGELA 152 (272)
T ss_pred ----HHHHhhcEEecccCC-CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHH
Confidence 112346899999974 34568999999875311100 000011223457788999999875 69999999999999
Q ss_pred HHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 168 RLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 168 rv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||+|||||+ .+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 59999999999999999999999999999864 5899999999999999999999999999
Q ss_pred EEEec
Q 035832 237 FLVEQ 241 (245)
Q Consensus 237 i~~~~ 241 (245)
++..+
T Consensus 233 i~~~g 237 (272)
T PRK13547 233 IVAHG 237 (272)
T ss_pred EEEec
Confidence 98654
No 169
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.1e-51 Score=351.89 Aligned_cols=200 Identities=29% Similarity=0.431 Sum_probs=168.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...+++++|+||+...+++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-----KKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-----hhhcccEEEEcCCccccCC
Confidence 46999999999999999999999999999999999999999999999998753211 1235679999854333566
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.+..... .. ........+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 109 ~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 109 DLPVIDSFYLLAAIY-DL--PPARFKKRLDELSELLDLEEL-LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred CCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 789999997642111 11 112233456788999999875 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 192 DWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999853 58999999999999999999999999998754
No 170
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=352.50 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=180.4
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
+||+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~-- 77 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL-- 77 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh--
Confidence 47999999999964 4699999999999999999999999999999999999984 89999999987643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. ++. .|+++|+.++.... ... ......+.+.++++.+++... ..++++.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~-~~~-~tv~e~l~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPT-PFP-MSIYDNVAFGPRIH-GVK-SKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCc-cCc-ccHHHHHHHHHHHc-CCC-cHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 01123567999999984 444 89999998752111 110 112233456778888888531 258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
No 171
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-51 Score=357.95 Aligned_cols=218 Identities=26% Similarity=0.447 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 5678999999999964 469999999999999999999999999999999999987 689999999988643111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
. ....+++++|+||++. +++ .|+.||+.++.... .. . . ....++.++++.+++.. ..+++++.+|||||
T Consensus 114 ~--~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~-~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 114 D--PVALRRRIGMVFQKPN-PFP-KSIYDNVAYGLKIQ-GY-D-G-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred c--hHhhhccEEEEecCCc-cCc-CCHHHHHHHHHHHc-CC-c-H-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 1 1123568999999984 454 59999998752111 11 1 1 23345788899999852 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE-EEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW-RMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~-~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||++ +|++|+++..+
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g 262 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeC
Confidence 99999999999999999999999999999999999999999766899999999999999999975 67999998654
No 172
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-51 Score=349.63 Aligned_cols=215 Identities=26% Similarity=0.305 Sum_probs=179.3
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+.++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------ 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------ 76 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh------
Confidence 46799999999754 2679999999999999999999999999999999999999 999999999987632
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHH-HHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQR-AINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..+++.++|+||++. +++.+|+.||+.++.................+.+ .++.+++.+. .++.+.+|||||+||++
T Consensus 77 -~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~ 153 (226)
T cd03234 77 -DQFQKCVAYVRQDDI-LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-GGNLVKGISGGERRRVS 153 (226)
T ss_pred -HHhcccEEEeCCCCc-cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-hcccccCcCHHHHHHHH
Confidence 123567999999984 6677899999987521111000011111223444 7889999865 68899999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh-hHHHhhccEEEEEeCCeEEEe
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL-KEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+.+|+++||||||+|||+.++..+.++|+++.+ +.|+|++||++ +++..+||++++|++|+++..
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999864 68999999998 588999999999999999764
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-51 Score=348.40 Aligned_cols=211 Identities=36% Similarity=0.519 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~------~~~ 72 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP------HKR 72 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh------hhc
Confidence 468999999974 469999999999999999999999999999999999999999999999988753221 246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. .+...|+.+|+.++...... ........+.++++.+|+.+. +++.+.+||+||+||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~t~~~nl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 73 PVNTVFQNYA-LFPHLTVFENIAFGLRLKKL---PKAEIKERVAEALDLVQLEGY-ANRKPSQLSGGQQQRVAIARALVN 147 (232)
T ss_pred ceEEEecccc-cCCCCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 55678999999865211111 112234457788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 148 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999864 689999999999999999999999999997654
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-51 Score=351.64 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=179.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~ 78 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI--D 78 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--c
Confidence 5899999999974 4699999999999999999999999999999999999863 69999999988743111 1
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. ++. .|+.+|+.++.... .. .......+.+.++++.+++.+ ...++++.+||||||||
T Consensus 79 ~~~~~~~i~~~~q~~~-~~~-~t~~~ni~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 79 VNQLRKRVGMVFQQPN-PFP-MSIYDNVAYGPRTH-GI-KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred hHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 1123567999999984 454 89999998752111 10 011223445777888888742 12588899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
No 175
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-52 Score=348.12 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=189.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|++++|+|+|++ +.+++|+||++++|++++++|||||||||.+|+|.|++.|++|+|.|+|.++... .
T Consensus 1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~--------~ 70 (300)
T COG4152 1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE--------I 70 (300)
T ss_pred CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh--------h
Confidence 46999999999974 6799999999999999999999999999999999999999999999999887432 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.+|||+|.+-. +++.+||.|.+.|..... + ...++.+..+..||+++++... ..+++.+||.|++|++.+..|+
T Consensus 71 ~~rIGyLPEERG-Ly~k~tv~dql~yla~Lk-G--m~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 71 KNRIGYLPEERG-LYPKMTVEDQLKYLAELK-G--MPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hhhcccChhhhc-cCccCcHHHHHHHHHHhc-C--CcHHHHHHHHHHHHHhcccccc-ccchHHHhhhhhhHHHHHHHHH
Confidence 468999999975 778999999998742111 1 1245667789999999999986 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|+++|||||||||||.+.+.+.+.+.++++ ++|||++||.|+.++++||++++|++|+.|..+.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 999999999999999999999999999999975 7999999999999999999999999999988764
No 176
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-51 Score=351.66 Aligned_cols=215 Identities=29% Similarity=0.444 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
|+++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL----RWLR 76 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH----HHHH
Confidence 4789999999642 2469999999999999999999999999999999999999999999999987643211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++|+||++. ++ ..|+.||+.++.... ......... ...+.++++.+ ++... .++++.+|||||||||+|||
T Consensus 77 ~~i~~~~q~~~-~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 77 SQIGLVSQEPV-LF-DGTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTL-VGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hhEEEECCchh-hh-hhhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhcccccee-eccCCccCCHHHHHHHHHHH
Confidence 57999999984 44 479999998753221 110000000 11233444444 55543 57889999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++.|+++.++.|||++||+++++. +||++++|++|+++..+
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999875689999999999986 89999999999998654
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-51 Score=351.46 Aligned_cols=218 Identities=28% Similarity=0.411 Sum_probs=178.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~ 79 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--D 79 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--C
Confidence 6999999999964 47999999999999999999999999999999999999874 8999999988743111 1
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.||+.++.... .. .......+.+.++++.+++.. ..+++++.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~t~~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 80 PVAMRRRVGMVFQKPN-PFPTMSVFDNVVAGLKLA-GI-RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HHHhhceeEEEeccCc-cCcCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 1123567999999984 666789999998652111 10 011222334556667676531 12588899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
No 178
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-51 Score=350.69 Aligned_cols=218 Identities=26% Similarity=0.414 Sum_probs=179.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~-- 78 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL-- 78 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc--
Confidence 47999999999964 46999999999999999999999999999999999999997 6999999987643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. .++ .|+.||+.++.... ... ........+.++++.+++.+ ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPN-PFP-KSIFDNVAFGPRML-GTT-AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCc-cCc-CcHHHHHhhHHHhc-CCC-hhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 11123567999999985 444 59999998752211 110 11222345667788888642 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999866789999999999999999999999999997654
No 179
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-51 Score=351.19 Aligned_cols=217 Identities=26% Similarity=0.434 Sum_probs=179.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~--- 76 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI--- 76 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---
Confidence 46999999999964 5699999999999999999999999999999999999986 5999999998764211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. .......+.+.++++.+++.+ ...++++.+|||||||
T Consensus 77 ~~~~~~~~i~~~~q~~~-~~~-~tv~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 77 DVADLRIKVGMVFQKPN-PFP-MSIYENVAYGLRAQ-GI-KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred chHHHHhheeEEecCCC-cCc-ccHHHHHHhHHHhc-CC-CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHH
Confidence 01123567999999984 444 89999998752211 10 011223345667788888742 1257889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999976789999999999999999999999999998754
No 180
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-51 Score=357.47 Aligned_cols=220 Identities=27% Similarity=0.424 Sum_probs=180.7
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.....
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 4668999999999964 469999999999999999999999999999999999864 499999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....++++++|+||++. ++. .|+.||+.++.... .. .........+.++++.+++.. ..+++++.+|||||
T Consensus 114 --~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 114 --DEVLLRKKIGMVFQKPN-PFP-KSIFDNIAYGPRLH-GI-NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred --chHHhhhcEEEECCCCC-CCc-cCHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 01123567999999985 444 59999998752111 10 011222345677888888731 13588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876689999999999999999999999999998654
No 181
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-51 Score=355.13 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=181.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.....
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~- 95 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD- 95 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch-
Confidence 668999999999974 5799999999999999999999999999999999999986 69999999987743211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqk 166 (245)
...++++++|+||++. +|+ .|+++|+.++..... .. ........+.++++.+++... .+++.+.+||||||
T Consensus 96 --~~~~~~~i~~v~q~~~-l~~-~tv~eni~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 96 --VLEFRRRVGMLFQRPN-PFP-MSIMDNVLAGVRAHK-LV-PRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred --hHHHhhheEEeccCCc-cCC-ccHHHHHHHHHHhcc-CC-CHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 1123567999999984 454 899999987531111 00 112233456678888998641 24788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999876689999999999999999999999999998754
No 182
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.6e-52 Score=349.86 Aligned_cols=214 Identities=31% Similarity=0.471 Sum_probs=176.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .
T Consensus 4 ~~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~ 77 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----E 77 (225)
T ss_pred CCceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH----H
Confidence 3457999999999964 469999999999999999999999999999999999999999999999987643221 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. ++ ..|+.||+.+..... ... ....++.++++.+++.+...++++.+|||||+|||+|||
T Consensus 78 ~~~~~i~~~~q~~~-l~-~~tv~enl~~~~~~~-~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 78 IYRQQVSYCAQTPT-LF-GDTVYDNLIFPWQIR-NQQ----PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred HHHhccEEEecccc-cc-cccHHHHHHhHHhhc-CCC----hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 13467999999974 44 469999998742111 110 112346788999999632368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe-CCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD-MGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~-~G~i~~~~ 241 (245)
||+.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+++++. .||++++|+ ++..+.++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhh
Confidence 99999999999999999999999999999999853 689999999999985 699999995 55555544
No 183
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-51 Score=394.72 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=185.8
Q ss_pred cceEEEEeEEEECCCC---------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC
Q 035832 15 YSCLEVRDVSYRPPGT---------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 85 (245)
.++|+++||++.|+.. ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4689999999999621 2469999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.+.... ..++++|+|+||++. .+++.+||.+|+.++.... ... ......+++.++++.+||....+++++++||||
T Consensus 391 ~~~~~~-~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~-~~~-~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 391 LSPGKL-QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH-GLL-PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCHHHH-HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 321100 112467999999973 3566789999998752111 100 122234567889999999632369999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||++||+.++.+++++|+++++ +.|||+||||++++..+||||++|++|+++..+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999863 589999999999999999999999999998654
No 184
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-51 Score=347.85 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~------~~~~ 71 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP------PEKR 71 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC------hhHc
Confidence 478999999964 3799999999999999999999999999999999999999999999998875321 1246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... ......+.+.++++.+++.+. +++++.+||||||||++||||++.
T Consensus 72 ~i~~~~q~~~-~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 72 DISYVPQNYA-LFPHMTVYKNIAYGLKKRKV---DKKEIERKVLEIAEMLGIDHL-LNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred CEEEEeecCc-cCCCccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhH-HhcCcccCCHHHHHHHHHHHHHHc
Confidence 7999999974 56678999999875321110 112234456788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++++|||||+|||+.+++.+++.|+++.. +.|||++||+++++..+||++++|++|+++..+
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~ 212 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999853 689999999999999999999999999998653
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.6e-51 Score=355.81 Aligned_cols=223 Identities=30% Similarity=0.389 Sum_probs=182.5
Q ss_pred ceEEEEeEEEECCC-------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC
Q 035832 16 SCLEVRDVSYRPPG-------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 16 ~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 88 (245)
++|+++||++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 12579999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.. ....++.++|+||++.. +++..|+.+|+.+....... . ........+.++++.+++.....++++.+|||||||
T Consensus 82 ~~-~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 82 AQ-RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS-L-DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred hH-HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc-C-CHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence 10 01124679999999742 34567999998653111000 0 112233467889999999632368999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|+|++||+++++..+||++++|++|+++..+
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 99999999999999999999999999999999999999864 689999999999999999999999999998654
No 186
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-51 Score=354.96 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=179.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
..++|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 21 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3558999999999964 469999999999999999999999999999999999997 699999999988743111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC----CCccCCCCCCCCChH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL----DGTSLDKDPHSLSGG 164 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG 164 (245)
....+++.++|+||++. ++. .|+.+|+.++....... ........+.++++.+++ .+. +++++.+||||
T Consensus 99 --~~~~~~~~i~~v~q~~~-~~~-~tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgG 171 (271)
T PRK14238 99 --SVEELRTNVGMVFQKPN-PFP-KSIYDNVTYGPKIHGIK--DKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGG 171 (271)
T ss_pred --cHHHHhhhEEEEecCCc-ccc-ccHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHH
Confidence 11123567999999984 444 69999998752111100 111223345666776643 333 58899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998654
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-51 Score=347.47 Aligned_cols=214 Identities=25% Similarity=0.390 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 3 l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 77 (229)
T cd03254 3 IEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR----KSLRS 77 (229)
T ss_pred EEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCH----HHHhh
Confidence 789999999964 2358999999999999999999999999999999999999999999999987643211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.||+.+..... ........ ....+.++++.+ ++... .++++.+|||||||||+||||
T Consensus 78 ~i~~~~q~~~-~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 78 MIGVVLQDTF-LF-SGTIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTV-LGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred hEEEecCCch-hh-hhHHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCH-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 459999998753211 10000110 011234455554 56554 577899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+++.|.++.++.|||++||+++++. .||++++|++|+++..+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~ 219 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEG 219 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeC
Confidence 9999999999999999999999999999999876789999999999986 59999999999998653
No 188
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.9e-51 Score=347.17 Aligned_cols=211 Identities=33% Similarity=0.515 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------ARDR 72 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------hhhc
Confidence 478999999974 46999999999999999999999999999999999999999999999998874321 1246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+. .++.+.+||+||+||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~t~~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 73 KIGFVFQHYA-LFKHLTVRDNIAFGLEIR-KH--PKAKIKARVEELLELVQLEGL-GDRYPNQLSGGQRQRVALARALAV 147 (237)
T ss_pred CEEEEecChh-hccCCcHHHHHHhHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998753211 11 112223456889999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||+|||+.+++.++++|.++.+ +.|||++||+++++.++||++++|++|+++..+
T Consensus 148 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEec
Confidence 9999999999999999999999999999864 589999999999999999999999999998654
No 189
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.2e-51 Score=346.33 Aligned_cols=214 Identities=30% Similarity=0.420 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|+++.|+++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE-LVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhH-HHHH
Confidence 7899999999642 156999999999999999999999999999999999999999999999998774322100 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.+|+.++....... ........+.++++.+|+.+. .++++.+||+|||||++|||||
T Consensus 81 ~~~i~~~~q~~~-~~~~~t~~~n~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 81 RRNIGYIFQAHN-LLGFLTARQNVQMALELQPNL--SYQEARERARAMLEAVGLGDH-LDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HhheEEEcCChh-hcCCCCHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHH
Confidence 467999999985 566689999998752211110 122334567889999999865 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+++. .++||++++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 999999999999999999999999999999864 5899999999985 579999999999986
No 190
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-51 Score=354.10 Aligned_cols=218 Identities=29% Similarity=0.377 Sum_probs=177.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
...+|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~------- 74 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA------- 74 (272)
T ss_pred hhceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh-------
Confidence 34579999999999632 4699999999999999999999999999999999999999999999999876321
Q ss_pred CCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..++.++|+||++...+ ...++.+++.++....... ..........+.++++.+|+.+. .++++.+||||||||++|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-RHRQIGELSGGQKKRVFL 153 (272)
T ss_pred hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHHH
Confidence 12346999999974211 2346788876542110000 00011223456788999999875 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||+++++ +|+++..+
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g 223 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASG 223 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 9999999999999999999999999999999999864 689999999999999999999877 79987654
No 191
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.2e-51 Score=344.10 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=170.1
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...........+++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 46999999999999999999999999999999999999999999999998864221100011124679
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+||++. +++..|+.||+.++.... .. ......+++.++++.+++++. .++++.+||||||||++|||||+.+|
T Consensus 79 ~~~~q~~~-~~~~~t~~e~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 79 GYLFQNFA-LIENETVEENLDLGLKYK-KL--SKKEKREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred eEEecchh-hccCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCchhh-hcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999984 566789999998752111 11 112334567889999999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++.+ .+||++++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999999864 68999999999976 589999875
No 192
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=348.56 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=179.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++...+..
T Consensus 4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 457999999999964 4699999999999999999999999999999999999763 489999999987532110
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....++.++|+||++. +++ .|++||+.++.... ... .....+..+.++++.+++.+ ...++++.+||||||
T Consensus 82 --~~~~~~~i~~~~q~~~-~~~-~tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 82 --VVALRRKIGMVFQRPN-PFP-KSIYENVAYGPRIH-GEK-NKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred --hhhhhceEEEEecCCc-cCc-ccHHHHHHhhHHhc-CCC-CHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 1123567999999984 444 59999998752211 100 11222345677788888742 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcC
Confidence 999999999999999999999999999999999999999876789999999999999999999999999998653
No 193
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-51 Score=349.57 Aligned_cols=218 Identities=28% Similarity=0.427 Sum_probs=178.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.-+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++...+..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~-- 80 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN-- 80 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc--
Confidence 3578999999964 479999999999999999999999999999999999986 4799999999876432110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqr 168 (245)
....++.++|+||++. +++ .|+.+|+.++.... ............+.++++.+++.+. .+++.+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~-~~~-~tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPN-PFP-KSIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcc-ccc-CCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 1123567999999984 454 59999998752111 1000111233456788999998641 2478899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876799999999999999999999999999998653
No 194
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-51 Score=386.99 Aligned_cols=226 Identities=24% Similarity=0.359 Sum_probs=183.0
Q ss_pred CcceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGE 86 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~ 86 (245)
+.+||+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 2 TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred CCceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 34589999999999631 24699999999999999999999999999999999999987 799999999987432
Q ss_pred CCCCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 87 PNNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
........+++++||+||++.. +++..++.+|+.+........ .......++.++++.+|+.+. .+++++.+|||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM--RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 2110001123579999999742 344578999887531110011 122334567889999999752 24889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+.+++.++++|++++ + +.|||+||||++++..+|||+++|++|+++..+
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999985 3 589999999999999999999999999998654
No 195
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=352.30 Aligned_cols=219 Identities=26% Similarity=0.375 Sum_probs=178.9
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
.+.++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++....
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 45668999999999974 4699999999999999999999999999999999999863 6999999998874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....++++++|+||++. ++. .|+.+|+.++.... .. .......+.++++.+++.. ..+++++.+||||
T Consensus 94 ~--~~~~~~~~i~~v~q~~~-l~~-~tv~~nl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 94 I--NSVKLRRQVGMVFQRPN-PFP-KSIYENIAFAPRAN-GY---KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred c--hhHHHhhcEEEEccCCc-ccc-ccHHHHHHhHHHhc-Cc---hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 1 11123568999999984 444 59999998752111 11 1112234566777777631 1257899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe---------CC
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD---------MG 235 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~---------~G 235 (245)
|||||+|||||+.+|++|||||||+|||+.+++.+.++|.+++++.|||++|||++++..+||++++|+ +|
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999999767899999999999999999999997 79
Q ss_pred eEEEec
Q 035832 236 GFLVEQ 241 (245)
Q Consensus 236 ~i~~~~ 241 (245)
+++..+
T Consensus 246 ~~~~~g 251 (274)
T PRK14265 246 KLVEFS 251 (274)
T ss_pred eEEEeC
Confidence 988654
No 196
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=360.75 Aligned_cols=222 Identities=26% Similarity=0.423 Sum_probs=182.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
..+|+++|++++|.++..++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.....
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~- 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI- 156 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence 34799999999996434569999999999999999999999999999999999986 579999999998853211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....+++.++|+||+|. .| ..|+++|+.|+.... . ..........+.++++.+++.+ ...++++.+||||||
T Consensus 157 -~~~~lr~~i~~v~q~~~-~~-~~ti~eNi~~~~~~~-~-~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 157 -SSLELRTRIGMVFQKPT-PF-EMSIFDNVAYGPRNN-G-INDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred -chHhhhccEEEEecCCc-cC-CCcHHHHHHhHHHhc-C-CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 11123568999999985 44 689999999762111 1 1111222334567788887732 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+..+||||++|++|+++..+.
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998777999999999999999999999999999987543
No 197
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=352.10 Aligned_cols=219 Identities=28% Similarity=0.442 Sum_probs=180.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~- 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV- 99 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc-
Confidence 447999999999964 469999999999999999999999999999999999987 489999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. +++ .|+.||+.++.... .. .......+.+.++++.+++.+ ..+++.+.+||||||
T Consensus 100 -~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 -DVAELRRRVGMVFQRPN-PFP-KSIYENVVYGLRLQ-GI-NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred -CHHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 11123568999999984 455 49999998752111 10 011222345677888888853 125788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999976789999999999999999999999999997654
No 198
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.9e-50 Score=347.00 Aligned_cols=223 Identities=22% Similarity=0.289 Sum_probs=181.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~ 90 (245)
+..++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|+++|.++......
T Consensus 3 ~~~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~- 79 (252)
T CHL00131 3 KNKPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE- 79 (252)
T ss_pred CCCceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh-
Confidence 44568999999999964 4699999999999999999999999999999999998 579999999999887543211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC---Cch-hHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS---GSI-QLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGY 165 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGq 165 (245)
...+..++|+||++. +++..|+.+++.+...... ... .........+.++++.+++.+...++++. +|||||
T Consensus 80 --~~~~~~~~~~~q~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 80 --ERAHLGIFLAFQYPI-EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred --hhheeeEEEEecccc-ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 111225889999984 6677899999876421100 000 00112234567889999997323578887 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999999999864 68999999999998877 8999999999998765
No 199
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-50 Score=348.76 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=178.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~~~ 89 (245)
.+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.....
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~- 79 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE- 79 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc-
Confidence 357999999999974 569999999999999999999999999999999999975 4 59999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. .++ .|+.+|+.++....... ......+.+.+.++.+++.. ...++++.+||||||
T Consensus 80 -~~~~~~~~i~~~~q~~~-~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 80 -DVVQLRKQVGMVFQQPN-PFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred -cHHHhcCeEEEEECCCc-cCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 01123467999999984 454 79999998752111000 11122334566777777631 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999876689999999999999999999999999998754
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.4e-51 Score=381.00 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=182.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ...
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~---~~~ 75 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI---RDT 75 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH---HHH
Confidence 4899999999964 4699999999999999999999999999999999999987 79999999988753211 011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++++||+||++. +++.+|+.+|+.++....... .........++.++++.+++.+...++++.+|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELT-LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccc-cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 2457999999984 667889999998863211000 00112234567889999999764236789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++...
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 99999999999999999999999999999999864 589999999999999999999999999998654
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-50 Score=350.34 Aligned_cols=217 Identities=24% Similarity=0.397 Sum_probs=177.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++......
T Consensus 8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 458999999999964 469999999999999999999999999999999999986 4799999999876421111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....+++++|+||++. +++ .|+.+|+.++.... .. .....+.+.++++.+++.. ...++++.+||||||
T Consensus 86 --~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 86 --PVEVRRRIGMVFQKPN-PFP-KSIYDNIAYGARIN-GY---KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred --hHHHhhhEEEEccCCc-ccc-ccHHHHHHhhhhhc-Cc---chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 1123567999999984 444 59999998763211 11 1112234556677777632 125788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe---------CCeE
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD---------MGGF 237 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~---------~G~i 237 (245)
||++|||||+.+|++|||||||+|||+.+++.++++|.++.++.|||++||+++++..+||++++|+ +|++
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999999766899999999999999999999998 7998
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 238 ~~~~ 241 (264)
T PRK14243 238 VEFD 241 (264)
T ss_pred EEeC
Confidence 8654
No 202
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=329.87 Aligned_cols=211 Identities=32% Similarity=0.470 Sum_probs=185.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.++.+++++.+|++..+.+|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|..+.+..
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-------- 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-------- 73 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--------
Confidence 468899999999876566999999999999999999999999999999999999999999999999886532
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
..-|.|||++. +++.+|+.||++|++..... .+....+.+.+.+..+||.+. .++++.+|||||||||.|||||
T Consensus 74 -aergvVFQ~~~-LlPWl~~~dNvafgL~l~Gi---~k~~R~~~a~q~l~~VgL~~~-~~~~i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 74 -AERGVVFQNEA-LLPWLNVIDNVAFGLQLRGI---EKAQRREIAHQMLALVGLEGA-EHKYIWQLSGGMRQRVGIARAL 147 (259)
T ss_pred -ccceeEeccCc-cchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhCcccc-cccceEeecchHHHHHHHHHHh
Confidence 23489999985 78999999999998543221 133445678889999999986 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~ 240 (245)
+.+|++|+||||+++||.-+++.+.++|-++- . ++.+++||||++++.-+++++++|+ .|+++..
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 99999999999999999999999999998874 3 6899999999999999999999998 4677653
No 203
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-51 Score=345.31 Aligned_cols=206 Identities=29% Similarity=0.341 Sum_probs=170.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL----HDLRS 78 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCH----HHHhh
Confidence 78999999997533569999999999999999999999999999999999999999999999987643221 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqk 166 (245)
.++|+||++. ++ ..|+.||+.+.. . . . . .++.++++.+ ++... .++++.+||+||+
T Consensus 79 ~i~~~~q~~~-l~-~~tv~enl~~~~-~-~-~---~----~~~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~LS~G~~ 145 (221)
T cd03244 79 RISIIPQDPV-LF-SGTIRSNLDPFG-E-Y-S---D----EELWQALERVGLKEFVESLPGGLDTV-VEEGGENLSVGQR 145 (221)
T ss_pred hEEEECCCCc-cc-cchHHHHhCcCC-C-C-C---H----HHHHHHHHHhCcHHHHHhcccccccc-cccCCCcCCHHHH
Confidence 7999999985 44 569999997531 1 1 1 1 1122233333 34332 3678999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.+++.++++|+++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 146 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999999999998767899999999999875 9999999999998764
No 204
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-51 Score=381.16 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=181.7
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+++++
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~~~~i 75 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS---KEALENGI 75 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH---HHHHhCCE
Confidence 4689999964 469999999999999999999999999999999999999999999999988743211 11124579
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+||++. +++..||.+|+.++...............+++.++++.+++... .++++.+|||||||||+|||||+.+|
T Consensus 76 ~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 76 SMVHQELN-LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID-PRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred EEEecccc-cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCC-ccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 99999984 66788999999876321111000112234567889999999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999864 6899999999999999999999999999987643
No 205
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-51 Score=372.21 Aligned_cols=223 Identities=25% Similarity=0.317 Sum_probs=195.1
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
...++++++|++|+|++ .++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+.....+. .
T Consensus 4 ~~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp---~ 78 (500)
T COG1129 4 STPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP---R 78 (500)
T ss_pred CccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH---H
Confidence 45668999999999985 579999999999999999999999999999999999999999999999998754322 2
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
......|+.|+|+.. +++.+||.||+.++..... ......+....++.++|+.+++... .+.++.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~-L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELS-LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechh-ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHH
Confidence 233567999999985 8899999999999843222 1222345667788999999999644 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+..++++||||||||+|+....+.++++++++++ +.+||+|||.++++.++|||+.+|.||+.+.+..
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999975 6999999999999999999999999999987654
No 206
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-51 Score=345.84 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~----~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL----DSLRR 75 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCH----HHHHh
Confidence 4789999999642 468999999999999999999999999999999999999999999999987743211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.+|+.++.... ........ ....+.+.++.+ ++... .++++.+|||||||||+||||
T Consensus 76 ~i~~~~q~~~-~~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 76 AIGVVPQDTV-LF-NDTIGYNIRYGRPDA-TDEEVIEAAKAAQIHDKIMRFPDGYDTI-VGERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred hEEEECCCCh-hh-cchHHHHHhhcCCCC-CHHHHHHHHHHcCcHHHHHhccccccch-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 579999998863211 10000000 111233444444 55553 577899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.++|.+++++.|||++||+++++.. ||++++|++|+++..+
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeC
Confidence 99999999999999999999999999999998667899999999999865 9999999999998653
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-51 Score=392.22 Aligned_cols=225 Identities=24% Similarity=0.341 Sum_probs=183.7
Q ss_pred cceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-----
Q 035832 15 YSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP----- 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----- 87 (245)
++||+++|++++|+.. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 4589999999999631 246999999999999999999999999999999999999999999999987552110
Q ss_pred C-CCC----CCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCC
Q 035832 88 N-NSP----EPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPH 159 (245)
Q Consensus 88 ~-~~~----~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~ 159 (245)
. ... ...++++||||||+|. .+++.+||.+|+.++....... ......+++.++++.+||.+ ..++++++
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA--SREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 000 0112357999999973 2456689999998863111011 12234456888999999963 13689999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|||||||||+|||||+.+|++|||||||++||+.++++++++|+++. + ++|||+||||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999996 3 68999999999999999999999999999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+.++
T Consensus 248 ~~~g 251 (623)
T PRK10261 248 VETG 251 (623)
T ss_pred cccC
Confidence 8643
No 208
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-50 Score=347.25 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=176.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+|+++|++++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~------ 74 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC------ 74 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc------
Confidence 69999999999 3 3689999999999999999999999999999999999999 999999999887421
Q ss_pred CCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv 169 (245)
..+++.++|+||++...| +..|+.+++.+..... ... . ....+.++++.+++.+. .+++++.+|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-GKP--A--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHc-CCC--h--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 112457999999974233 3468888875531110 110 1 12457788999999752 25889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999853 589999999999999999999999999998654
No 209
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-50 Score=348.49 Aligned_cols=227 Identities=26% Similarity=0.385 Sum_probs=182.1
Q ss_pred CCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccC
Q 035832 9 GGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNN 83 (245)
Q Consensus 9 ~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 83 (245)
|.......+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 8 ~~~~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 8 GDVSPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CCccCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 334445667999999999964 4699999999999999999999999999999999999975 799999999765
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCC
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHS 160 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~ 160 (245)
...........+++.++|+||++. .+. .|+.||+.++...... .......+.+.++++.+++.+ ...++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~-~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 161 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPN-PFP-KSIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDLAFN 161 (265)
T ss_pred cccccccCHHHHhccEEEEccCCc-CCc-chHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCccc
Confidence 321111011123567999999985 454 5999999875211100 011122345667778787631 125788999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 161 LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999987678999999999999999999999999999875
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 242 g 242 (265)
T PRK14252 242 G 242 (265)
T ss_pred C
Confidence 4
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=348.98 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=179.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++...+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~-- 81 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI-- 81 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc--
Confidence 36999999999964 4699999999999999999999999999999999999985 48999999988743111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. +++ .|+.||+.++.... ... ........+.++++.+++.+ ..+++++.+|||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 82 NINRLRRQIGMVFQRPN-PFP-MSIYENVAYGVRIS-AKL-PQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred chHhhhhheEEEecccc-cCC-ccHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 11123467999999984 454 89999998752111 000 11222345677888888742 1368899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe-----CCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD-----MGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~-----~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|+ +|+++..+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999998767899999999999999999999998 59988654
No 211
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.9e-51 Score=344.44 Aligned_cols=213 Identities=24% Similarity=0.290 Sum_probs=171.9
Q ss_pred eEEEEeEEEECCC----C-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC--c--cCCCCC
Q 035832 17 CLEVRDVSYRPPG----T-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG--Y--NNDGEP 87 (245)
Q Consensus 17 ~l~~~~l~~~y~~----~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~--~~~~~~ 87 (245)
||+++|++++|++ + ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| . ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999953 1 24699999999999999999999999999999999999999999999984 2 332111
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.......++++++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+...++++.+|||||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR-VIPRVSALEVVAEPLLER-GV--PREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHHhcceEEEecccc-cCCCccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 00000012356999999985 667789999997642111 11 112234467788999999753347899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +.|||++||+++++..+||+++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999864 6899999999999989999998763
No 212
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-50 Score=340.21 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=175.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 8 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~------- 78 (214)
T PRK13543 8 APPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG------- 78 (214)
T ss_pred CcceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-------
Confidence 3468999999999964 4699999999999999999999999999999999999999999999999876421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++.++|++|++. ++...|+.||+.+..... .. ...+.+.++++.+++.+. .++++.+||||||||++|||
T Consensus 79 ~~~~~i~~~~q~~~-~~~~~t~~e~l~~~~~~~-~~-----~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 79 DRSRFMAYLGHLPG-LKADLSTLENLHFLCGLH-GR-----RAKQMPGSALAIVGLAGY-EDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred hhhhceEEeecCcc-cccCCcHHHHHHHHHHhc-CC-----cHHHHHHHHHHHcCChhh-ccCChhhCCHHHHHHHHHHH
Confidence 12356999999974 556679999997742110 10 112345678899999875 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|++.+|+++||||||++||+.+++.+.++|+++.+ +.|+|++|||++++.++||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999999998864 58999999999999999999999874
No 213
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-51 Score=382.80 Aligned_cols=225 Identities=26% Similarity=0.296 Sum_probs=184.1
Q ss_pred CcceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.++|+++|++++|+. +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~--- 332 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP--- 332 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH---
Confidence 3458999999999942 12468999999999999999999999999999999999998 599999999988742211
Q ss_pred CCCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCC-C-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 92 EPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQS-G-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
....++.++|+||++. .+++.+|+.||+.++..... . ..........++.++++.+++.....++++.+|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 1112456999999963 25567899999987531100 0 000112233567889999999632369999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.+++.++++|.++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999999864 689999999999999999999999999998754
No 214
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-52 Score=331.60 Aligned_cols=223 Identities=29% Similarity=0.411 Sum_probs=189.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC---C
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS---P 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~---~ 91 (245)
++.|+++|+.|+|+. ..+|++|||+-++|+++.|||.|||||||+||||+=|.+|+.|.|.++|+.+.-..... .
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 456999999999975 46899999999999999999999999999999999999999999999999874221110 0
Q ss_pred C------CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 92 E------PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 92 ~------~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
. ...|.++|+|||+++ +|..+||.||+.-+ +..... ..+.+..++++.+|..+|+.+. .+.||..|||||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FN-LWsHmtvLeNViEa-PvhVLg-~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQ 157 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFN-LWSHMTVLENVIEA-PVHVLG-VSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQ 157 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcc-hhHHHHHHHHHHhc-chHhhc-CCHHHHHHHHHHHHHHhCchhh-hhcCccccCchH
Confidence 1 112457999999984 89999999999875 221111 1244556778899999999986 689999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccCC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 244 (245)
+||++|||||+.+|+++|+|||||+|||+-.-++++.++++++ +.|++++||.|.++...+.+|++|++|.+ .++++|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P 236 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI-EEEGPP 236 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee-cccCCh
Confidence 9999999999999999999999999999999999999999985 69999999999999999999999999876 444444
No 215
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.3e-51 Score=339.55 Aligned_cols=201 Identities=27% Similarity=0.325 Sum_probs=173.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-----~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-----DEYH 73 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-----HHhh
Confidence 5899999999964 46999999999999999999999999999999999999999999999998864321 1234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|++|++. +++..|+.||+.+..... .. .....+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~-~~-----~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 74 QDLLYLGHQPG-IKTELTALENLRFYQRLH-GP-----GDDEALWEALAQVGLAGF-EDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred hheEEeCCccc-cCcCCcHHHHHHHHHHhc-Cc-----cHHHHHHHHHHHcCCHHH-hhCChhhcCHHHHHHHHHHHHHh
Confidence 67999999974 566789999998752111 10 123457788999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
.+|+++||||||++||+.+++.++++|+++++ +.|||++|||++++..+.+|++++
T Consensus 146 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 146 TRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999864 589999999999998888888877
No 216
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=346.66 Aligned_cols=223 Identities=26% Similarity=0.345 Sum_probs=181.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC-CCCC-CC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG-EPNN-SP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~ 91 (245)
..++|.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.-... .+.. ..
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 5678999999999974 569999999999999999999999999999999999999999877777642110 0000 01
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.+|+.++.... ... ........+.++++.+++.. ...++.+..||+|||||
T Consensus 85 ~~~~~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 85 AIKLRKEVGMVFQQPN-PFPHLSIYDNIAYPLKSH-GIK-EKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHHHhcceEEEccCCc-cCCCCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 1123567999999985 566789999998763211 111 11223345778899999853 12578999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
No 217
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-50 Score=343.72 Aligned_cols=195 Identities=31% Similarity=0.444 Sum_probs=165.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...+|+||++. +++..|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------~~~~~v~q~~~-l~~~~t 70 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---------PDRMVVFQNYS-LLPWLT 70 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------hhheEEecCcc-cCCCCC
Confidence 57999999999999999999999999999999999999999999998764311 12489999984 566789
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~ 194 (245)
+.||+.++........ ........+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 71 v~e~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 71 VRENIALAVDRVLPDL-SKSERRAIVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHcCCHHH-HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 9999987521100011 122234457889999999864 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 195 ARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 195 ~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++.++++|.++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999853 589999999999999999999999999997654
No 218
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.4e-51 Score=390.98 Aligned_cols=218 Identities=28% Similarity=0.446 Sum_probs=182.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-++++||+|+|+....++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.|+...+. ..+|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~----~~lR 546 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL----ASLR 546 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH----HHHH
Confidence 499999999998765579999999999999999999999999999999999999999999999999876432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++||||+|++ .++..|++||+.++.+......-........+.+.+..+ |.+.. .......||||||||++||||
T Consensus 547 ~~ig~V~Q~~--~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~-v~E~G~~LSGGQrQrlalARa 623 (709)
T COG2274 547 RQVGYVLQDP--FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP-VGEGGANLSGGQRQRLALARA 623 (709)
T ss_pred hheeEEcccc--hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Confidence 8999999998 466889999999985543211101111112234444443 55543 577788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++||||||||+||+.+.+.+.+.|.++..++|+|+|||++..+ +.|||+++|++|+++.+++
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEEEccCCceeccCC
Confidence 999999999999999999999999999999999889999999999876 5799999999999988664
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8e-51 Score=383.14 Aligned_cols=225 Identities=27% Similarity=0.351 Sum_probs=183.7
Q ss_pred CcceEEEEeEEEECCC---------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPG---------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
+.++|+++|++++|+. +.+.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 4568999999999952 12469999999999999999999999999999999999995 8999999998875
Q ss_pred CCCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..+.... ..+++++||+||++. .+++..||.+|+.++........ .......++.++++.+++.....++++.+|||
T Consensus 351 ~~~~~~~-~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 351 NLNRRQL-LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTL-SAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred ccchhhH-HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 3221100 012457999999973 35567899999987521110000 11223356788999999973236899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999863 589999999999999999999999999998654
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-50 Score=379.55 Aligned_cols=224 Identities=24% Similarity=0.235 Sum_probs=183.9
Q ss_pred cceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.++|+++|++++|++ +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..... .
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~---~ 331 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP---A 331 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH---H
Confidence 458999999999942 124689999999999999999999999999999999999995 89999999987742110 1
Q ss_pred CCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCc--hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 93 PLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGS--IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
..+++++||+||++. .+++.+|+.+|+.++....... ..........+.++++.+++.....++++.+||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 122467999999963 3567789999998752110000 001122345678899999996423689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.+.
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998754
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.8e-50 Score=377.88 Aligned_cols=222 Identities=30% Similarity=0.407 Sum_probs=181.7
Q ss_pred CcceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc-Ccc---CCCC
Q 035832 14 DYSCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIR-GYN---NDGE 86 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~-g~~---~~~~ 86 (245)
+.+||+++|++++|++ +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999952 22469999999999999999999999999999999999999999999996 542 2111
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----cCCCCCCCCC
Q 035832 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----SLDKDPHSLS 162 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~LS 162 (245)
.... ....++++||+||++. +++.+|+.+|+.+.... .. .......++.++++.+++.+. .+++++.+||
T Consensus 356 ~~~~-~~~~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 356 GPDG-RGRAKRYIGILHQEYD-LYPHRTVLDNLTEAIGL--EL--PDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred chhh-HHHHhhhEEEEccCcc-cCCCCcHHHHHHHHHHc--CC--CHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 0000 0012457999999974 66778999999874211 11 112223467789999999741 2589999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||+|||||+.+|++|||||||+|||+.+++.++++|++++ + +.|||++|||++++..+||++++|++|+++..
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999985 3 58999999999999999999999999999875
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 510 g 510 (520)
T TIGR03269 510 G 510 (520)
T ss_pred C
Confidence 4
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=343.73 Aligned_cols=218 Identities=25% Similarity=0.344 Sum_probs=181.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~ 88 (245)
.++.+.+++++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.....
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 3557999999999964 5699999999999999999999999999999999999986 79999999998743211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGq 165 (245)
. ...+++.++|+||++. ++ ..|+.||+.++.... .. .......+.++++.+++.+. ..++++.+|||||
T Consensus 83 ~--~~~~~~~i~~v~q~~~-~~-~~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 154 (261)
T PRK14263 83 D--PVVVRRYIGMVFQQPN-PF-SMSIFDNVAFGLRLN-RY---KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQ 154 (261)
T ss_pred c--hHhhhhceEEEecCCc-cc-cccHHHHHHHHHhhc-Cc---hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 1 1123567999999984 44 689999998763211 11 11223467788999998531 2367889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe--------CCeE
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD--------MGGF 237 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~--------~G~i 237 (245)
+||++|||||+.+|++|||||||+|||+.++.+++++|+++.++.|||++||+++++..+||++++|+ +|++
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999999999999767899999999999999999999996 7999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 235 ~~~g 238 (261)
T PRK14263 235 VEMG 238 (261)
T ss_pred EEeC
Confidence 8754
No 223
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-50 Score=383.47 Aligned_cols=215 Identities=29% Similarity=0.409 Sum_probs=175.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||++.|.++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++...+. ..++
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~----~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP----ESWR 422 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH----HHHH
Confidence 49999999766543 57999999999999999999999999999999999999 999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+||+|+|. +++.|++||+.++.+......-........+.+.++.+ |++.. .......||||||||++||||
T Consensus 423 ~~i~~v~Q~~~--LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~-vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 423 KHLSWVGQNPQ--LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP-IGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred hheEEecCCCc--CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Confidence 78999999983 45789999999974321110000011111234445555 55543 466678899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999887899999999998765 69999999999998754
No 224
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-50 Score=336.31 Aligned_cols=201 Identities=26% Similarity=0.317 Sum_probs=167.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL----EDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH----HHH
Confidence 3599999999997433469999999999999999999999999999999999999999999999987643211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. ++ ..|+.+|+.+.. . .. . +.+.++++ .++++.+|||||+||++|||||
T Consensus 81 ~~~i~~v~q~~~-~~-~~tv~~~l~~~~-~--~~---~----~~~~~~l~--------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 81 RSSLTIIPQDPT-LF-SGTIRSNLDPFD-E--YS---D----EEIYGALR--------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HhhEEEEecCCc-cc-CccHHHHhcccC-C--CC---H----HHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHH
Confidence 467999999984 44 469999997531 1 00 1 11223332 2567899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||++||+.+++.++++|+++.++.|+|++||+++++.. ||++++|++|+++..+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998667899999999999865 9999999999987654
No 225
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-50 Score=378.43 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=181.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~ 335 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP---LDA 335 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH---HHH
Confidence 45899999998763 37999999999999999999999999999999999999999999999987643110 011
Q ss_pred CCCcEEEEecCC--CCCCCcccHHHHHHhcCCCC---CC---chhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHH
Q 035832 95 PPEKVGIVFQFP--ERYFVADNVLDEVIFGWPRQ---SG---SIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~--~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq 165 (245)
.++++||+||++ ..+++.+|+.+|+.++.... .. ...........+.++++.+++. +. .++++.+|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-VNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC-ccCccccCChHH
Confidence 245799999984 23566789999998753210 00 0000112234577899999996 54 699999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++...
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 689999999999999999999999999998654
No 226
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-50 Score=377.34 Aligned_cols=207 Identities=23% Similarity=0.250 Sum_probs=176.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... ..++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~----~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSF----EQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCH----HHHH
Confidence 6999999999964 459999999999999999999999999999999999999999999998876532111 1123
Q ss_pred CcEEEEecCCCCCC-------CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYF-------VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~-------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+.++|+||++...+ ...++.+++.++ .....++.++++.+++++. +++++.+|||||||||
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv 144 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITAL-LDRRFKYLSTGETRKT 144 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhh-hhCCcccCCHHHHHHH
Confidence 56999999864211 135777776532 0123457788999999875 6999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999865 589999999999999999999999999998754
No 227
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.6e-50 Score=334.12 Aligned_cols=197 Identities=27% Similarity=0.339 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-----DSIAR 73 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-----HHhhh
Confidence 478999999964 46899999999999999999999999999999999999999999999998764211 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.||+.+.... . ..+++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~--~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 74 GLLYLGHAPG-IKTTLSVLENLRFWHAD--H-------SDEQVEEALARVGLNGF-EDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred heEEeccccc-cCCCcCHHHHHHhhccc--c-------cHHHHHHHHHHcCChhh-hcCchhhCCHHHHHHHHHHHHHhc
Confidence 8999999974 56678999999875211 0 12356788999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+|+++||||||++||+.+++.+.+.|+++.+ +.|+|++|||......+|++++.+
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999998864 689999999999999999999887
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.7e-50 Score=377.88 Aligned_cols=218 Identities=27% Similarity=0.350 Sum_probs=178.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcC---------------
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRG--------------- 80 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g--------------- 80 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 46999999999999999999999999999999999997 79999999972
Q ss_pred --------ccCCC--CCCCC-C---CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 035832 81 --------YNNDG--EPNNS-P---EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146 (245)
Q Consensus 81 --------~~~~~--~~~~~-~---~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (245)
.++.. ..... . ...+++.++|+||++..+++..|+++|+.++.... .. . ......++.++++.
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~-~-~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GY-E-GKEAVGRAVDLIEM 155 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CC-C-HHHHHHHHHHHHHH
Confidence 22110 00000 0 01124579999998434667789999998753211 11 1 12334568889999
Q ss_pred cCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHh
Q 035832 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 147 ~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~ 224 (245)
+|+++. +++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++. + +.|||+||||++++..
T Consensus 156 ~gl~~~-~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 156 VQLSHR-ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234 (520)
T ss_pred cCChhh-hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 999875 699999999999999999999999999999999999999999999999999985 3 5899999999999999
Q ss_pred hccEEEEEeCCeEEEec
Q 035832 225 LVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~~ 241 (245)
+||++++|++|+++..+
T Consensus 235 ~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEG 251 (520)
T ss_pred hcCEEEEEeCCEEeeec
Confidence 99999999999998653
No 229
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=341.71 Aligned_cols=218 Identities=24% Similarity=0.427 Sum_probs=179.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 90 (245)
.+|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+.
T Consensus 2 ~~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~-- 77 (250)
T PRK14266 2 YRIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV-- 77 (250)
T ss_pred cEEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--
Confidence 36899999999964 469999999999999999999999999999999999874 489999999988743211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....+++++|+||++. .|. .|+.+|+.++...... .........+.++++.+++.+ ..+++++.+||+||||
T Consensus 78 ~~~~~~~~i~~~~q~~~-~~~-~t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 78 DVVELRKKVGMVFQKPN-PFP-KSIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCc-cCc-chHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 01123567999999984 444 5999999875321110 011223456778888888742 1258889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
No 230
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-49 Score=340.22 Aligned_cols=219 Identities=22% Similarity=0.267 Sum_probs=173.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++..... ...
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~~~ 75 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP---EDR 75 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH---HHH
Confidence 5899999999974 46999999999999999999999999999999999995 6999999999987643211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCC---CCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPR---QSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv 169 (245)
.+..++|++|++. .++..+..+++.+.... ..... .........+.++++.+++.+...++.+. +|||||||||
T Consensus 76 ~~~~i~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 76 AGEGIFMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred hhcceEEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 2356999999974 44555655554322110 00000 01112244567888999995323567775 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||++||+.+++.+.++|+++++ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999865 58999999999998887 8999999999998654
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-49 Score=342.94 Aligned_cols=218 Identities=28% Similarity=0.382 Sum_probs=179.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.....
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~-- 81 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV-- 81 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc--
Confidence 47999999999964 36899999999999999999999999999999999999985 8999999987632111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. +++ .|+.||+.++.... .. .........+.++++.+++.+ ...++++.+|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPN-LFP-MSVYDNVAYGVKIV-GW-RPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 11123567999999975 555 89999998752111 10 011122345678888888743 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeC-----CeEEEe
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDM-----GGFLVE 240 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~-----G~i~~~ 240 (245)
|++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + +.|||++|||++++..+||++++|++ |+++..
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999975 3 68999999999999999999999999 998765
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 238 ~ 238 (261)
T PRK14258 238 G 238 (261)
T ss_pred C
Confidence 3
No 232
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-50 Score=329.28 Aligned_cols=178 Identities=29% Similarity=0.418 Sum_probs=156.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~ 72 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP---RDA 72 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH---HHH
Confidence 4579999999988 7999999999999999999999999999999999999999999999988753211 112
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++++|+||++. .+++..|+.||+.+.. . ||||||||++||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~---------~---------------------------LS~G~~qrl~la 116 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSS---------L---------------------------LSGGNQQKVVLA 116 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHh---------h---------------------------cCHHHHHHHHHH
Confidence 3467999999863 3456679999987631 0 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++||+++++..+||++++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999864 68999999999999999999999999874
No 233
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=349.57 Aligned_cols=221 Identities=27% Similarity=0.419 Sum_probs=179.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~- 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV- 119 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence 447999999999974 469999999999999999999999999999999999986 689999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC----------chhHHHHHHHHHHHHHHHcCCCC---ccCCC
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG----------SIQLKEYLALNLQRAINWVGLDG---TSLDK 156 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~ 156 (245)
.....+++++|+||++. +++ .|+++|+.++...... ...........+.++++.+++.. ...++
T Consensus 120 -~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 -NLVELRKRVGMVFQSPN-PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred -cHHHHhhceEEEccCCc-ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 01123467999999984 444 6999999875321100 00001122445778888888742 12588
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE-EEEeCC
Q 035832 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS-WRMDMG 235 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v-~~l~~G 235 (245)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++ ++|++|
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999976789999999999999999996 578999
Q ss_pred eEEEec
Q 035832 236 GFLVEQ 241 (245)
Q Consensus 236 ~i~~~~ 241 (245)
+++..+
T Consensus 277 ~i~~~g 282 (305)
T PRK14264 277 ELVEYD 282 (305)
T ss_pred EEEEeC
Confidence 998754
No 234
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.6e-49 Score=341.54 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=168.4
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------------- 65 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------------- 65 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------------
Confidence 47999999999974 4699999999999999999999999999999999999999999999864
Q ss_pred CCcEEEEecCCCCCCCc--ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVA--DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+..++|+||++. ++.. .|+.+++.+. . .. ...++.++++.+++.+. .++++.+||||||||++|||
T Consensus 66 ~~~i~~v~q~~~-~~~~l~~~~~~~~~~~-~---~~------~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 66 KLRIGYVPQKLY-LDTTLPLTVNRFLRLR-P---GT------KKEDILPALKRVQAGHL-IDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred ccCEEEeccccc-cccccChhHHHHHhcc-c---cc------cHHHHHHHHHHcCChHH-HhCChhhCCHHHHHHHHHHH
Confidence 135999999974 3333 4777776542 1 00 11246678999999875 68999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|++ +++..+
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g 202 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSG 202 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeC
Confidence 99999999999999999999999999999999853 68999999999999999999999974 676543
No 235
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-49 Score=324.05 Aligned_cols=172 Identities=38% Similarity=0.563 Sum_probs=153.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-----EEVKR 73 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-----Hhhhc
Confidence 478999999964 46999999999999999999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+. |||||+||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 74 RIGYLPEEPS-LYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred cEEEEecCCc-cccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHc
Confidence 7999999984 555678887763 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.+++.+.++|+++.+ +.|+|++|||++++..+||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999864 58999999999999999999999999874
No 236
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-49 Score=342.37 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=175.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++|++++|++..+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++...+. ..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~----~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL----HT 92 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH----HH
Confidence 34699999999997533469999999999999999999999999999999999999999999999988753221 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.++.++|+||++. ++ ..|+.+|+.... . ......... ....+.++++.+ +++.. .++.+.+||+||+||++|
T Consensus 93 ~~~~i~~v~q~~~-l~-~~tv~~nl~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~-~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 93 LRSRLSIILQDPI-LF-SGSIRFNLDPEC-K-CTDDRLWEALEIAQLKNMVKSLPGGLDAV-VTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HhhhEEEECCCCc-cc-ccHHHHhcCcCC-C-CCHHHHHHHHHHhCcHHHHhhcccccCcE-eccCCCcCCHHHHHHHHH
Confidence 3567999999984 44 469999986531 1 110000111 111244556666 67654 577889999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++++++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999988667999999999999875 9999999999998654
No 237
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-50 Score=349.60 Aligned_cols=206 Identities=24% Similarity=0.287 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..... ..+++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~----~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL----QKWRK 77 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH----HHHhh
Confidence 78999999996434569999999999999999999999999999999999997 78999999998754221 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC-----------CChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS-----------LSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqk 166 (245)
+++|+||++. +| ..|+++|+..... .. .+.+.++++.+|+.+. .++++.. ||||||
T Consensus 78 ~i~~v~q~~~-lf-~~tv~~nl~~~~~---~~-------~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 78 AFGVIPQKVF-IF-SGTFRKNLDPYGK---WS-------DEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred hEEEECCCcc-cc-hhhHHHHhhhccC---CC-------HHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHH
Confidence 8999999985 44 4699999963211 11 1245667888899764 5777776 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|||+|||+++.+.. ||||++|++|+++..+.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999988667999999999998864 99999999999987553
No 238
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.2e-49 Score=338.12 Aligned_cols=199 Identities=29% Similarity=0.402 Sum_probs=166.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC-
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER- 108 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~- 108 (245)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..+++.++|+||++..
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~------~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------SIRGRHIATIMQNPRTA 74 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh------hhhhheeEEEecCchhh
Confidence 57999999999999999999999999999999999999 899999999887431 1123579999999842
Q ss_pred CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 035832 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDE 186 (245)
+.+..|+.+|+.+..... ... ......++.++++.+++.+ ...++++.+|||||||||+|||||+.+|++|||||
T Consensus 75 ~~~~~t~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSL-GKL--SKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCcccCHHHHHHHHHHHc-Ccc--HHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 334579999987642111 111 1223456788999999972 13688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 187 PLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERG 208 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999864 589999999999999999999999999998754
No 239
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-49 Score=341.96 Aligned_cols=206 Identities=28% Similarity=0.382 Sum_probs=173.3
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++..... ..+++.
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~----~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSA----AELARH 70 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCH----HHHhhh
Confidence 57788874 269999999999999999999999999999999999964 9999999988753221 112356
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh-
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ- 177 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~- 177 (245)
++|+||++. .++..|+.+|+.++.... . ........+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 71 i~~v~q~~~-~~~~~tv~~nl~~~~~~~--~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 71 RAYLSQQQT-PPFAMPVFQYLTLHQPDK--T--RTEAVASALNEVAEALGLDDK-LGRSVNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred eEEecccCc-cCCCccHHHHHHhcCccC--C--CcHHHHHHHHHHHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHhcc
Confidence 999999974 456789999998763211 1 112234567889999999865 699999999999999999999998
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 ------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g 215 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASG 215 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 6799999999999999999999999999864 689999999999999999999999999998654
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.8e-50 Score=380.55 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=175.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL----ASLR 416 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH----HHHH
Confidence 599999999997644679999999999999999999999999999999999999999999999998865332 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.|+|+||++. +++.|++||+.++.+.........+.. ...+.+.++.+ |++.. ......+||||||||++|||
T Consensus 417 ~~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~-ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 417 NQVALVSQNVH--LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV-IGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred hhceEEccCce--eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce-eCCCCCcCCHHHHHHHHHHH
Confidence 78999999983 457899999998732211110000000 11123334433 34432 35556789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+++...+++.|.++.+++|+|+|||+++.+ +.||+|++|++|+++..+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999987789999999999876 569999999999998754
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-49 Score=330.12 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=162.8
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+.++|++|.|+.+ .+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~---- 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA---- 78 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch----
Confidence 57899999999742 4679999999999999999999999999999999999999 89999999998875321
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...++.++|+||++. +++.+|+.+|+.++.. .. .++++.+||+|||||++|
T Consensus 79 -~~~~~~i~~~~q~~~-~~~~~tv~~~l~~~~~---------------~~------------~~~~~~~LS~Ge~qrl~l 129 (202)
T cd03233 79 -EKYPGEIIYVSEEDV-HFPTLTVRETLDFALR---------------CK------------GNEFVRGISGGERKRVSI 129 (202)
T ss_pred -hhhcceEEEEecccc-cCCCCcHHHHHhhhhh---------------hc------------cccchhhCCHHHHHHHHH
Confidence 123567999999974 6667899999976410 00 366788999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEE-EecChhHHHhhccEEEEEeCCeEEEe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILV-VSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii-~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||||+.+|+++||||||+|||+.+++.++++|+++.+ +.|+|+ ++|+.+++..+||++++|++|+++..
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999864 456555 45667888899999999999998753
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.7e-50 Score=327.05 Aligned_cols=177 Identities=30% Similarity=0.486 Sum_probs=155.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ..+++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~----~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-E----KALSS 75 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-H----HHHHh
Confidence 478999999975323699999999999999999999999999999999999999999999999876321 0 11246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. ++ ..|++||+ +.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~-~~-~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 76 LISVLNQRPY-LF-DTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred hEEEEccCCe-ee-cccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 7999999974 33 46777665 66899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||++||+.+++.+++.|+++.++.|||++||+++++. .||++++|++|+++..
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQ 177 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 9999999999999999999999999999866789999999999986 6999999999998754
No 243
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-49 Score=324.48 Aligned_cols=172 Identities=35% Similarity=0.510 Sum_probs=151.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP----NELGD 76 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH----HHHHh
Confidence 47899999997533469999999999999999999999999999999999999999999999988753221 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++ .|+.||+ ||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~-~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 77 HVGYLPQDDE-LFS-GSIAENI-----------------------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred heEEECCCCc-ccc-CcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhc
Confidence 7999999984 443 4777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.++..++++|+++++ +.|||++|||++++ .+||++++|++|++
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999864 68999999999988 58999999999874
No 244
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-49 Score=325.31 Aligned_cols=176 Identities=40% Similarity=0.580 Sum_probs=154.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ....+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~ 76 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPLRR 76 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--hHHHHhh
Confidence 478999999964 469999999999999999999999999999999999999999999999988753210 0112356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+. ||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 77 RIGMVFQDFA-LFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred cEEEEecCCc-cCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHC
Confidence 8999999985 55667888876541 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||+|||+.++..++++|+++++ +.|+|++|||++++..+||++++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999864 4899999999999998999999999884
No 245
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-49 Score=385.16 Aligned_cols=205 Identities=30% Similarity=0.460 Sum_probs=172.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|++..+++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++...+. ..+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV----QAVR 526 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH----HHHH
Confidence 599999999996544679999999999999999999999999999999999999999999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++||||||++. +++.|++||+.++.+ . . ++++.++++..++ +.. .......|||||
T Consensus 527 ~~i~~v~Q~~~--lf~gTI~eNi~~~~~-~-~--------~e~i~~al~~a~l~~~i~~lp~G~dt~-ige~G~~LSGGQ 593 (686)
T TIGR03797 527 RQLGVVLQNGR--LMSGSIFENIAGGAP-L-T--------LDEAWEAARMAGLAEDIRAMPMGMHTV-ISEGGGTLSGGQ 593 (686)
T ss_pred hccEEEccCCc--cCcccHHHHHhcCCC-C-C--------HHHHHHHHHHcCcHHHHHhcccccccc-ccCCCCCCCHHH
Confidence 78999999984 457899999998733 1 1 1123333444443 322 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++||||||||+||+.+.+++.+.|+++ ++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999887 479999999998875 59999999999998765
No 246
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.4e-49 Score=334.15 Aligned_cols=200 Identities=27% Similarity=0.333 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------~~ 91 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------GL 91 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh---------cc
Confidence 789999999964 5799999999999999999999999999999999999999999999998764210 00
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.. .+++..|+.||+.++....... .....+.+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 92 -------~~-~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 92 -------GG-GFNPELTGRENIYLNGRLLGLS---RKEIDEKIDEIIEFSELGDF-IDLPVKTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -------cc-cCCCCCcHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 11 1234579999998752111101 12233457788999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+++.|.++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999864 58999999999999999999999999998764
No 247
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.4e-50 Score=387.48 Aligned_cols=214 Identities=26% Similarity=0.369 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 552 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR----EVLA 552 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH----HHHH
Confidence 599999999998644679999999999999999999999999999999999999999999999998864332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++||||||++. +++.|++||+.++.+... .....+ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 553 ~~i~~v~Q~~~--lf~gTi~eNi~l~~~~~~-~~~i~~al~~~~l~~~i~~lp~gl~t~-i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 553 NSVAMVDQDIF--LFEGTVRDNLTLWDPTIP-DADLVRACKDAAIHDVITSRPGGYDAE-LAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred hheeEEecCCh--hhhccHHHHhhCCCCCCC-HHHHHHHHHHhCCHHHHHhCcCcccce-eccCCCCCCHHHHHHHHHHH
Confidence 88999999983 457899999998632211 000000 0011123334433 44443 45667889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+++++.|++ .++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHH-hCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999986 4689999999999875 59999999999998765
No 248
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=365.28 Aligned_cols=208 Identities=29% Similarity=0.468 Sum_probs=175.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++.+|+++.|++++ ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+...... ..++
T Consensus 320 ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~----~~~~ 394 (559)
T COG4988 320 EISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP----EAWR 394 (559)
T ss_pred eeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH----HHHH
Confidence 355669999998754 79999999999999999999999999999999999999999999999998765432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---------cCCCCCCCCChHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---------SLDKDPHSLSGGYKR 167 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~~LSgGqkq 167 (245)
++++||+|+| +++..|++||+.++.+... ++.+.++++..++.+. ........|||||+|
T Consensus 395 k~i~~v~Q~p--~lf~gTireNi~l~~~~~s---------~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 395 KQISWVSQNP--YLFAGTIRENILLARPDAS---------DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred hHeeeeCCCC--ccccccHHHHhhccCCcCC---------HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHH
Confidence 8999999999 5668899999999743211 1234444555444322 134455669999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||+.+++++|+||||++||.++.+.+.+.|.++.+++|+|++||++..+. -+|+|++|++|+++..+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~g 536 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA-DADRIVVLDNGRLVEQG 536 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh-cCCEEEEecCCceeccC
Confidence 99999999999999999999999999999999999999999999999999999875 58999999999998754
No 249
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-49 Score=358.22 Aligned_cols=220 Identities=27% Similarity=0.391 Sum_probs=193.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.+++++++|.|++ ..++++|||+|.+|||.||+|+||||||||+++|.|+++|++|+|+++|+.+.-.+ +...
T Consensus 2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s---P~dA 76 (501)
T COG3845 2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS---PRDA 76 (501)
T ss_pred CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC---HHHH
Confidence 356999999999984 67999999999999999999999999999999999999999999999999875432 2334
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+..||+|+|++. +++.+||.||+.++...........+..++++.++.+.+|++= ..++++.+||-||||||.|.+|
T Consensus 77 ~~~GIGMVhQHF~-Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFM-LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccc-cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHH
Confidence 4678999999985 7889999999999854321111223455678899999999985 4799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+-|-|...+++++.++++++ ++|||+|||-++++.++|||+-+|..|+++..-
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999999999999999999975 799999999999999999999999999987543
No 250
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-50 Score=326.32 Aligned_cols=218 Identities=27% Similarity=0.345 Sum_probs=185.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++..+ +.+++++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++...+. ....
T Consensus 1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~----~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP----EELA 74 (259)
T ss_pred CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCH----HHHH
Confidence 6899999999965 468999999999999999999999999999999999999999999999998765432 2235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++-+.+||+.. +-+++||.|.+.+|........ ...+..+.+.+++...++..+ ..+...+|||||||||.+||.|+
T Consensus 75 ~~raVlpQ~s~-laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~l-a~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 75 RHRAVLPQNSS-LAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGL-AGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHhhhcccCcc-cccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhh-hccchhhcCchHHHHHHHHHHHH
Confidence 67799999985 5567899999999843221111 112334457788999999986 78999999999999999999996
Q ss_pred h------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 177 Q------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 177 ~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
+ ++++|+||||||+||+.++..++++.+++.+ +..|+.|-||++.+..||||+++|++|++++.+.+
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 5 4458899999999999999999999999974 68999999999999999999999999999987643
No 251
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-51 Score=330.31 Aligned_cols=217 Identities=30% Similarity=0.400 Sum_probs=191.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
|++++||+|+|++ +.+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++...+ ...+.
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~----s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP----SKELA 74 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC----hHHHH
Confidence 6899999999975 57999999999999999999999999999999999999999999999999987543 23456
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++++-|... .-..+||+|-+.||....... ...++....+.++++.++|++. .+++..+||||||||+.||+.++
T Consensus 75 k~lSILkQ~N~-i~~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l-~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 75 KKLSILKQENH-INSRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDL-SDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHhhch-hhheeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccch-HHHhHHhcccchhhhhhhheeee
Confidence 78999999863 445789999999984322222 1234556678999999999986 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+.++||||.++||..+..++++.|+++.+ ++||++|-||++++..|+|+++.|++|+++.++.
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~ 219 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCC
Confidence 99999999999999999999999999999975 5899999999999999999999999999998764
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8.9e-50 Score=326.95 Aligned_cols=177 Identities=34% Similarity=0.492 Sum_probs=154.5
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~----~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP----KELARK 74 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH----HHHHHH
Confidence 47899999964 469999999999999999999999999999999999999999999999987643211 011234
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+|| +++.+++.+. .++.+.+||||||||++|||||+.+
T Consensus 75 i~~~~q--------------------------------------~l~~~gl~~~-~~~~~~~LS~G~~qrl~laral~~~ 115 (180)
T cd03214 75 IAYVPQ--------------------------------------ALELLGLAHL-ADRPFNELSGGERQRVLLARALAQE 115 (180)
T ss_pred HhHHHH--------------------------------------HHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHhcC
Confidence 666665 5666788764 5888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+++||||||++||+.+++.+.++|.++++ +.|+|++||+++++.++||++++|++|+++..
T Consensus 116 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999864 68999999999999999999999999998753
No 253
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=315.15 Aligned_cols=220 Identities=26% Similarity=0.386 Sum_probs=188.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC--CCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE--PNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~~ 94 (245)
.|+++|+++.|+. ..+|-||+|+.++||.+.++||||||||||+|.++-+.-|.+|+..+.|....-. +.......
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 4899999999975 4689999999999999999999999999999999999999999999988754321 11111123
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.|+++|+|||+. .+|+.+||.||+.-+..+-.+. .+.+...++.++++++.|.++ +|+.|-.|||||+|||+||||
T Consensus 80 lr~~vgmvfqqy-~lwphltv~enlieap~kv~gl--~~~qa~~~a~ellkrlrl~~~-adr~plhlsggqqqrvaiara 155 (242)
T COG4161 80 LRRNVGMVFQQY-NLWPHLTVQENLIEAPCRVLGL--SKDQALARAEKLLKRLRLKPY-ADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHhhhhhhhhh-ccCchhHHHHHHHhhhHHHhCC--CHHHHHHHHHHHHHHhccccc-cccCceecccchhhhHHHHHH
Confidence 467899999997 4899999999998752211111 233445568899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|++||||++|||+-..++.++|+++.. +.|-+++||..+.+...+.+|++|++|+|+..+.
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecc
Confidence 9999999999999999999999999999999986 6999999999999999999999999999987653
No 254
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.6e-49 Score=383.49 Aligned_cols=217 Identities=30% Similarity=0.437 Sum_probs=176.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~----~~lr 538 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP----ADLR 538 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||||++. ++..|++||+.++.+...............+.+.++.+ |++.. .......||||||||++||||
T Consensus 539 ~~i~~v~Q~~~--lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~-i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 539 RNIGYVPQDPR--LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ-IGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred hccEEECCChh--hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccce-ecCCCCCCCHHHHHHHHHHHH
Confidence 78999999983 45789999999873321100000000011123334433 44433 456677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++|||||||+||+++.+.+.+.|.++.+++|+|+|||+++.+ +.||+|++|++|+++..+
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999988789999999999876 579999999999998765
No 255
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-49 Score=330.32 Aligned_cols=198 Identities=30% Similarity=0.337 Sum_probs=169.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . . .+
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-----~-~~ 72 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-----D-VA 72 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-----h-hH
Confidence 6999999999964 469999999999999999999999999999999999999999999999987531 1 1 35
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|++|++. +++..|+.+|+.+.... .. . ....+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 73 ~~~~~~~~~~~-~~~~~tv~~~l~~~~~~-~~-~-----~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 143 (207)
T PRK13539 73 EACHYLGHRNA-MKPALTVAENLEFWAAF-LG-G-----EELDIAAALEAVGLAPL-AHLPFGYLSAGQKRRVALARLLV 143 (207)
T ss_pred hhcEEecCCCc-CCCCCcHHHHHHHHHHh-cC-C-----cHHHHHHHHHHcCCHHH-HcCChhhcCHHHHHHHHHHHHHh
Confidence 67999998864 55678999999764211 01 0 11246788999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
.+|+++||||||+|||+.+++.++++|++++ ++.|||++||+++++.. |+++.++.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999999999999999875 46899999999999876 99988854
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-49 Score=321.50 Aligned_cols=171 Identities=35% Similarity=0.502 Sum_probs=150.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++....+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL----ESLRK 76 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH----HHHHh
Confidence 47899999997532368999999999999999999999999999999999999999999999987643211 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. ++ ..|+.||+ ||+|||||++|||||+.
T Consensus 77 ~i~~~~~~~~-~~-~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 77 NIAYVPQDPF-LF-SGTIRENI-----------------------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred hEEEEcCCch-hc-cchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhc
Confidence 7999999983 43 35776665 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|++|||||||+|||+.+++.+.++|+++.+++|||++|||++++.. ||++++|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999998767899999999999977 99999999885
No 257
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.8e-49 Score=374.95 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=177.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++|++|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~----~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE----AAL 412 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH----HHH
Confidence 3599999999997543579999999999999999999999999999999999999999999999998865432 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc---------CCCCCCCCChHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS---------LDKDPHSLSGGYK 166 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGqk 166 (245)
++.++|+||++. +++.|++||+.++.+.. .++.+.++++.+++.+.. .......||||||
T Consensus 413 r~~i~~v~Q~~~--lf~~ti~~Ni~~~~~~~---------~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 413 RQAISVVSQRVH--LFSATLRDNLLLAAPNA---------SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HhheeEEcccch--hhcccHHHHhhcCCCcc---------CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 678999999984 45689999999873211 122455667777765431 2235678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999999999877899999999999875 59999999999998754
No 258
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.3e-49 Score=325.26 Aligned_cols=183 Identities=31% Similarity=0.415 Sum_probs=160.6
Q ss_pred eEEEEeEEEECCCC----ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT----QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~ 90 (245)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---- 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---- 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH----
Confidence 48999999999742 256999999999999999999999999999999999999 99999999999887421
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..++.++|+||++. +++..|+.+|+.++. .. . +||||||||++
T Consensus 79 ---~~~~~i~~~~q~~~-~~~~~t~~~~i~~~~---------------~~--------------~----~LS~G~~qrv~ 121 (194)
T cd03213 79 ---SFRKIIGYVPQDDI-LHPTLTVRETLMFAA---------------KL--------------R----GLSGGERKRVS 121 (194)
T ss_pred ---hhhheEEEccCccc-CCCCCcHHHHHHHHH---------------Hh--------------c----cCCHHHHHHHH
Confidence 23567999999984 566789999987530 00 0 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEe
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+.+|+++||||||++||+.+++.++++|+++.+ +.|+|++|||++ ++..+||++++|++|+++..
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999864 689999999996 68889999999999998754
No 259
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-49 Score=328.62 Aligned_cols=196 Identities=23% Similarity=0.279 Sum_probs=166.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ....+
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-----~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-----LCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----HHHHH
Confidence 5899999999964 4699999999999999999999999999999999999999999999999876421 11234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|++|++. +++..|+.+|+.++... .. ....+.++++.+++.+. .++++.+|||||+||++||||++
T Consensus 74 ~~i~~~~q~~~-~~~~~tv~~~~~~~~~~-~~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 74 KQLCFVGHRSG-INPYLTLRENCLYDIHF-SP-------GAVGITELCRLFSLEHL-IDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred hheEEeccccc-cCcCCCHHHHHHHHHhc-Cc-------chHHHHHHHHHcCCchh-hhCChhhcCHHHHHHHHHHHHHh
Confidence 67999999874 55678999999875211 10 12356788999999864 68899999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~ 230 (245)
.+|++|||||||++||+.+++.+.++|+++++ +.|||++||+.+.+. -||...
T Consensus 144 ~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~-~~d~~~ 197 (200)
T PRK13540 144 SKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN-KADYEE 197 (200)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc-ccchhh
Confidence 99999999999999999999999999999854 689999999998875 477644
No 260
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-48 Score=325.43 Aligned_cols=196 Identities=25% Similarity=0.393 Sum_probs=157.8
Q ss_pred EEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 18 l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
|+++||+++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997532 3699999999999999999999999999999999999999999999976
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHH-HHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA-LNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
+++|+||++. ++ +.|++||+.+.... .........+ ..+.+.+..+ +++.. .++.+.+||+|||||++|
T Consensus 67 ---~i~~~~q~~~-l~-~~t~~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~lS~G~~qrv~l 138 (204)
T cd03250 67 ---SIAYVSQEPW-IQ-NGTIRENILFGKPF--DEERYEKVIKACALEPDLEILPDGDLTE-IGEKGINLSGGQKQRISL 138 (204)
T ss_pred ---EEEEEecCch-hc-cCcHHHHhccCCCc--CHHHHHHHHHHcCcHHHHHhccCcccce-ecCCCCcCCHHHHHHHHH
Confidence 4999999985 44 67999999885221 1000000000 0122233333 34433 567789999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||||+.+|+++||||||++||+.+++.+++ +++.+.+ +.|||++||+++.+.. ||++++|++|+
T Consensus 139 aral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999998 4666644 5899999999999887 99999999885
No 261
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.5e-49 Score=374.63 Aligned_cols=214 Identities=28% Similarity=0.401 Sum_probs=173.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~----~~l~ 414 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH----SVLR 414 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH----HHHH
Confidence 59999999999753 579999999999999999999999999999999999999999999999998864332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++|+|+||+|. +++.|+++|+.++. . ........ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 415 ~~i~~v~Q~~~--lF~~Ti~~NI~~~~-~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~-i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 415 QGVAMVQQDPV--VLADTFLANVTLGR-D-ISEEQVWQALETVQLAELARSLPDGLYTP-LGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred hheEEEccCCc--cccchHHHHHHhCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHHH
Confidence 88999999984 45679999999973 1 11000000 0011123333333 34432 35566789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+++..+
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999877899999999998765 69999999999998754
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.5e-49 Score=369.08 Aligned_cols=217 Identities=23% Similarity=0.292 Sum_probs=179.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~---~~~ 324 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP---QDG 324 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHH
Confidence 45899999984 26999999999999999999999999999999999999999999999988743211 011
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCC-C--chhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQS-G--SIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr 168 (245)
.++++||+||++. .+++.+|+.+|+.++..... . ...........+.++++.+++. +. .++++.+||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPS-MEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCC-ccCchhhCCHHHHHH
Confidence 2457999999973 35677899999987521100 0 0001122344678899999995 44 699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++....
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999864 6899999999999999999999999999986543
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.7e-49 Score=327.12 Aligned_cols=196 Identities=29% Similarity=0.360 Sum_probs=165.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-----DEPHR 73 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-----HHhhh
Confidence 578999999964 46999999999999999999999999999999999999999999999998865321 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|++|++. +++..|+.+|+.+..... . . . ...+.++++.+++.+. .++++.+||||||||++||||++.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~----~-~-~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 74 NILYLGHLPG-LKPELSALENLHFWAAIH-G----G-A-QRTIEDALAAVGLTGF-EDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred heEEeccCcc-cccCCcHHHHHHHHHHHc-C----C-c-HHHHHHHHHHcCCHHH-hcCChhhcCHHHHHHHHHHHHHhc
Confidence 7999999874 566689999998742111 1 0 1 2346788999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
+|+++||||||++||+.+++.+++.|.++. ++.|||++||+...+ .|++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 999999999999999999999999999985 468999999998654 5688764
No 264
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5e-49 Score=373.74 Aligned_cols=217 Identities=31% Similarity=0.441 Sum_probs=179.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++..... ..+|
T Consensus 328 ~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~----~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL----DSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH----HHHH
Confidence 3999999999974 3579999999999999999999999999999999999999999999999999876433 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+||||++. + +..|+++|+.++.+......-.+......+.+.++.+ |++.. .......||||||||++||||
T Consensus 403 ~~I~~V~Qd~~-L-F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~-vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 403 KRIGIVSQDPL-L-FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTI-VGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HhccEEcccce-e-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccce-ecCCCccCCHHHHHHHHHHHH
Confidence 88999999984 4 4689999999985432111000111111245556665 56654 566778999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+|++|+||||||+||+.+...+.+.+.++.+++|+|+|+|++..+.. ||+|++|++|++++.++
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999988777899999999998876 99999999999776553
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-49 Score=368.26 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=179.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 255 ~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~---~~~ 325 (501)
T PRK11288 255 EVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP---RDA 325 (501)
T ss_pred CcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH---HHH
Confidence 346999999732 37999999999999999999999999999999999999999999999987642211 111
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCC--c-hhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSG--S-IQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr 168 (245)
.+++++|+||++. .+++..|+.||+.++...... . ........+.+.++++.+++. +. .++++.+||||||||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~qr 404 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-REQLIMNLSGGNQQK 404 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-ccCccccCCHHHHHH
Confidence 2467999999963 356778999999875321100 0 001112234578899999994 44 699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+|||||+.+|++|||||||+|||+.++++++++|.++++ +.|||++|||++++..+||++++|++|++++++.
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 9999999999999999999999999999999999999865 6899999999999999999999999999987653
No 266
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-49 Score=369.23 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=180.3
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|.|+.+ +.++|+|+||+|+|||++||+||||+||||+.++|..++.|++|+|.+||.|+...+ ..++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~----~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN----HKYL 540 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC----HHHH
Confidence 59999999999864 457999999999999999999999999999999999999999999999999986543 2345
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++||+|-|+|. ++..|+.|||.+|........-........+.+.+..+ |.+.. -..+..+||||||||+||||
T Consensus 541 r~~Ig~V~QEPv--LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~-VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPV--LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTV-VGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccce--eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccc-cCCccccccchHHHHHHHHH
Confidence 789999999994 45789999999996522110000111122244455444 33332 46778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.||.+|||||.||+||.++...+.+.|.++.++.|||+|.|.+..++ .+|+|+++++|+++..+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999988899999999999885 68999999999997654
No 267
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-48 Score=372.46 Aligned_cols=216 Identities=27% Similarity=0.368 Sum_probs=174.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~----~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR----ASLR 408 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH----HHHH
Confidence 59999999999743 469999999999999999999999999999999999999999999999998865332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+|+||+|. ++..|++||+.++.+...............+.+.++.+ |++.. .......||||||||++||||
T Consensus 409 ~~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~-i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 409 RNIAVVFQDAG--LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTV-VGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred hheEEEecCcc--cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccch-hcCCCCCCCHHHHHHHHHHHH
Confidence 78999999984 45789999999873221100000000111233444443 44433 355667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++|||||||+||+.+.+.+++.|.++.+++|+|+|||+++.+ +.||++++|++|+++..+
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRILVFDNGRVVESG 551 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999887789999999999876 579999999999998654
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=323.65 Aligned_cols=182 Identities=29% Similarity=0.379 Sum_probs=158.9
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.|+++|+++.|++. .+++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~------- 75 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK------- 75 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHH-------
Confidence 58999999999641 246999999999999999999999999999999999986 4899999999987631
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.++++++|++|++. +++..|+++|+.++. . + + +|||||+||++||
T Consensus 76 -~~~~~i~~~~q~~~-~~~~~tv~~~l~~~~-----------~--------~----------~----~LSgGe~qrv~la 120 (192)
T cd03232 76 -NFQRSTGYVEQQDV-HSPNLTVREALRFSA-----------L--------L----------R----GLSVEQRKRLTIG 120 (192)
T ss_pred -HhhhceEEecccCc-cccCCcHHHHHHHHH-----------H--------H----------h----cCCHHHhHHHHHH
Confidence 12467999999974 566789999997631 0 0 0 8999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeC-CeEEEe
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDM-GGFLVE 240 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~-G~i~~~ 240 (245)
|||+.+|+++||||||++||+.+++.+++.|+++++ +.|||++||+++ ++..+||++++|++ |+++..
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 999999999999999999999999999999999864 689999999998 47889999999999 998764
No 269
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.5e-49 Score=325.12 Aligned_cols=184 Identities=33% Similarity=0.543 Sum_probs=152.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . ....+++.++|+||++...++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~-~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-K-GLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc-c-chHHHHhhEEEEecChhhccc
Confidence 46999999999999999999999999999999999999999999999998874211 1 111234679999999742334
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.++.... . . ......+++.++++.+++.+. .++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 83 ~~tv~~nl~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 83 AADVDQDVAFGPLNL-G-L-SEAEVERRVREALTAVGASGL-RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred cccHHHHHHHHHHHc-C-C-CHHHHHHHHHHHHHHcCchhh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 579999998752111 1 1 112233457788999999875 69999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CceEEEEecChhH
Q 035832 192 DWKARADVVKLLKHLKK-ELTILVVSHDLKE 221 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~ 221 (245)
|+.+++.+.++|+++++ +.|||++|||+++
T Consensus 159 D~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999864 6899999999875
No 270
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.9e-49 Score=368.10 Aligned_cols=217 Identities=21% Similarity=0.288 Sum_probs=177.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---~ 334 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA---Q 334 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH---H
Confidence 355899999983 159999999999999999999999999999999999999999999999877432110 1
Q ss_pred CCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ 170 (245)
..+++++|+||++. .+++..|+.+|+.................++.+.++++.+++. +. +++++.+|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-AEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-ccCccccCCcHHHHHHH
Confidence 12357999999852 3566789999986421000000000112234578899999996 54 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.+.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999999864 689999999999999999999999999998765
No 271
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-48 Score=327.44 Aligned_cols=204 Identities=23% Similarity=0.380 Sum_probs=161.7
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
.+.|+.++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...........+++.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999754 5699999999999999999999999999999999999999999999999876432211011123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----------ccCCCCCCCCChHHHHH
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----------TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqr 168 (245)
++|+||++. ++ ..|+++|+.+.... . .. ...++++.+++.+ ..+++++.+||||||||
T Consensus 81 i~~~~q~~~-~~-~~t~~~nl~~~~~~--~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 81 VAYAAQKPW-LL-NATVEENITFGSPF--N----KQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred EEEEcCCCc-cc-cccHHHHHhhcCcC--C----HH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 999999984 44 67999999875211 1 11 1122233333321 11356789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVK--LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~--~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|+|||||+.+|+++||||||++||+.+++.+++ +++.+++ +.|+|++||+++.+. .||++++|++|.
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999998 6666654 589999999999885 699999999873
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.4e-48 Score=403.18 Aligned_cols=217 Identities=24% Similarity=0.363 Sum_probs=188.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+.|+++||++.|+++.+.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ....
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~-----~~~~ 1001 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN-----LDAV 1001 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch-----HHHH
Confidence 47999999999963335799999999999999999999999999999999999999999999999987431 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.+||+||++. +++.+||+||+.+..... +. .....++++.++++.+||.+. .++++.+|||||||||+|||||
T Consensus 1002 r~~IG~~pQ~~~-L~~~LTV~E~L~f~~~lk-g~--~~~~~~~~v~~lL~~vgL~~~-~~~~~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1002 RQSLGMCPQHNI-LFHHLTVAEHILFYAQLK-GR--SWEEAQLEMEAMLEDTGLHHK-RNEEAQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred hhcEEEEecCCc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHH
Confidence 567999999974 677899999998852211 11 112334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..+.
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999777999999999999999999999999999987653
No 273
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-48 Score=367.36 Aligned_cols=217 Identities=28% Similarity=0.389 Sum_probs=178.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~----~~~~ 391 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR----ETFG 391 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH----HHHh
Confidence 599999999997544579999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.++|+||+|. + ++.|++||+.++.+.. ..... .......+.+.++.+ |++.. .++...+||||||||++|||
T Consensus 392 ~~i~~v~q~~~-l-f~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~gl~t~-~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 392 KHIGYLPQDVE-L-FPGTVAENIARFGENA-DPEKIIEAAKLAGVHELILRLPDGYDTV-IGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred hheEEecCCcc-c-ccccHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCccccccc-cCCCcCCCCHHHHHHHHHHH
Confidence 78999999984 4 4579999998642211 11110 111112245666666 66654 57788999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|++.+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCC
Confidence 9999999999999999999999999999999986 568999999999865 5799999999999987653
No 274
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.8e-49 Score=380.45 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=169.9
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++..... ..+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~----~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH----HYL 553 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH----HHH
Confidence 59999999999753 3579999999999999999999999999999999999999999999999998865332 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++|+||+|+|. ++..|++||+.++.+... ...... .....+.+.++.+ |++.. ......+||||||||++||
T Consensus 554 r~~i~~v~Q~~~--lF~gTIreNI~~g~~~~~-~e~i~~al~~a~l~~~i~~lp~GldT~-ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 554 HRQVALVGQEPV--LFSGSVRENIAYGLTDTP-DEEIMAAAKAANAHDFIMEFPNGYDTE-VGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HhhceEEecCcc--ccccCHHHHHhcCCCCCC-HHHHHHHHHHcCCHHHHHhCCCccCCc-ccCCCCcCCHHHHHHHHHH
Confidence 678999999983 557899999998743211 000000 0011122333333 34432 4556678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++++|+++|||||||+||+++.+.+.+ ....+++|+|+|||+++.+ ..||+|++|++|+++..++
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEeeC
Confidence 99999999999999999999999999988 2223568999999999976 4699999999999987653
No 275
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.4e-48 Score=370.73 Aligned_cols=217 Identities=29% Similarity=0.412 Sum_probs=173.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~----~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL----ASLR 405 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998754332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++|+||+| .+++.|++||+.++.+.......... .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 406 ~~i~~v~Q~~--~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~-i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 406 RQVALVSQDV--VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred hhceEEccCc--ccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccce-ecCCCCcCCHHHHHHHHHHH
Confidence 7899999998 45688999999987321111000000 0011123333333 34332 34455689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++.+|+++|||||||+||+.+.+.+++.|.++.+++|+|+|||+.+.+ ..||+|++|++|+++..+
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERG 549 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeC
Confidence 9999999999999999999999999999999987789999999999865 679999999999988644
No 276
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-49 Score=384.13 Aligned_cols=218 Identities=32% Similarity=0.436 Sum_probs=181.0
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|+.+ +.++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.+||.|+..... ++.
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~----~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL----KWL 425 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch----HHH
Confidence 59999999999865 3579999999999999999999999999999999999999999999999999865432 356
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
|.+||+|+|+| .++..|++||+.+|.+......-.+......+.+.+..+ |++.. .....-+||||||||+||||
T Consensus 426 r~~iglV~QeP--vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~-vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 426 RSQIGLVSQEP--VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL-VGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HhhcCeeeech--hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc-ccCCCCCCChHHHHHHHHHH
Confidence 78999999999 456899999999996443211100111111233333333 44433 46667789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||||||||+||+++.+.+.+.|.+..++.|.|+|+|++..+.+ +|++++|++|+|+..+.
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999999999999976 99999999999988654
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=330.89 Aligned_cols=183 Identities=35% Similarity=0.484 Sum_probs=164.2
Q ss_pred cceEEEEeEEEECCCCc-------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQ-------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~-------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
+++++++|+++.|+.+. ..+++||||+|++||+++|+|+||||||||-|+|+||++|++|+|+|+|+++....
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 46799999999996321 47999999999999999999999999999999999999999999999998753210
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.....+++.++|+.+|+....++++|++|||||+|
T Consensus 82 ---------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 82 ---------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 11234568899999999876689999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|++|||||+.+|+++++|||+|+||...+.+++++|.++++ +.|.++||||+..+..+|||+++|..|+++..+.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecC
Confidence 99999999999999999999999999999999999999974 5899999999999999999999999999998653
No 278
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.6e-48 Score=322.50 Aligned_cols=183 Identities=27% Similarity=0.395 Sum_probs=155.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...... ...
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~---~~~ 75 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE---ERA 75 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH---HHh
Confidence 478999999974 4699999999999999999999999999999999999 579999999999987543211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+..++|+||++. .++..++.+++ ++.+.+|||||+||++|||||
T Consensus 76 ~~~i~~v~q~~~-~~~~~~~~~~l-----------------------------------~~~~~~LS~G~~qrv~laral 119 (200)
T cd03217 76 RLGIFLAFQYPP-EIPGVKNADFL-----------------------------------RYVNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred hCcEEEeecChh-hccCccHHHHH-----------------------------------hhccccCCHHHHHHHHHHHHH
Confidence 346999999974 44444444433 112358999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHh-hccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAA-LVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~-~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||++||+.+++.++++|+++.+ +.|||++||+++.+.. +||++++|++|+++..+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999865 6899999999999887 79999999999998754
No 279
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-49 Score=357.28 Aligned_cols=210 Identities=35% Similarity=0.478 Sum_probs=181.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++|++|+|++...++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++...+. +..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~----~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE----QALR 411 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh----hhHH
Confidence 699999999999876689999999999999999999999999999999999999999999999998865432 2246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
+.+++++|.+ .++..|+++|+.++.+... ++.+.++++++||.+. +.+.-...||||||
T Consensus 412 e~i~vl~Qr~--hlF~~Tlr~NL~lA~~~As---------DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~ 480 (573)
T COG4987 412 ETISVLTQRV--HLFSGTLRDNLRLANPDAS---------DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 (573)
T ss_pred HHHhhhccch--HHHHHHHHHHHhhcCCCCC---------HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH
Confidence 7899999998 4568899999999744321 2234455566655432 35666789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||+|+++.+++||||||.|||+.+.+++++.|.+..+++|+|||||++..++ .||||++|++|+++.+++
T Consensus 481 rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred HHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999999888999999999999875 789999999999998764
No 280
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-48 Score=377.24 Aligned_cols=217 Identities=22% Similarity=0.368 Sum_probs=177.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~----~~~r 530 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP----AWLR 530 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH----HHHH
Confidence 599999999997544569999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||+|++. +++.|++||+.++.+...............+.+.++.+ |++.. ......+||||||||++||||
T Consensus 531 ~~i~~v~q~~~--lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~-i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 531 RQMGVVLQENV--LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE-VGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HhCeEEccCCe--ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE-ecCCCCCCCHHHHHHHHHHHH
Confidence 78999999983 55789999999863321100000001111234445554 56543 566788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999999999877799999999999875 59999999999998764
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-48 Score=365.32 Aligned_cols=203 Identities=23% Similarity=0.326 Sum_probs=171.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 63 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--------------- 63 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 5899999999964 46999999999999999999999999999999999999999999999751
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC------------C----ch--hH-----------HHHHHHHHHHHHHHc
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS------------G----SI--QL-----------KEYLALNLQRAINWV 147 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------------~----~~--~~-----------~~~~~~~~~~~l~~~ 147 (245)
.++||+||++. .+...|+.||+.++..... . .. .. ......++.++++.+
T Consensus 64 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (530)
T PRK15064 64 ERLGKLRQDQF-AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV 142 (530)
T ss_pred CEEEEEeccCC-cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence 35999999974 6677899999986521000 0 00 00 001234577899999
Q ss_pred CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc
Q 035832 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 148 ~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d 227 (245)
|+.+...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 143 gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcc
Confidence 9975433678999999999999999999999999999999999999999999999974 36899999999999999999
Q ss_pred EEEEEeCCeEEE
Q 035832 228 HSWRMDMGGFLV 239 (245)
Q Consensus 228 ~v~~l~~G~i~~ 239 (245)
++++|++|+++.
T Consensus 221 ~i~~l~~g~i~~ 232 (530)
T PRK15064 221 HMADLDYGELRV 232 (530)
T ss_pred eEEEEeCCEEEE
Confidence 999999999853
No 282
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-48 Score=378.41 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=173.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|++ .+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++...+. ..+|
T Consensus 473 ~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 547 (708)
T TIGR01193 473 DIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR----HTLR 547 (708)
T ss_pred cEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH----HHHH
Confidence 5999999999974 3579999999999999999999999999999999999999999999999998855332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++||||||++. +++.|++||+.++...........+ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 548 ~~i~~v~Q~~~--lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~-i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 548 QFINYLPQEPY--IFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTE-LSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HheEEEecCce--ehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcE-ecCCCCCCCHHHHHHHHHHH
Confidence 78999999984 4578999999987211111000000 0011123334333 44432 45667889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+.+.+.|.++ +++|+|+|||+++.+ ..||+|++|++|+++..+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999886 568999999999876 579999999999998654
No 283
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-48 Score=400.93 Aligned_cols=218 Identities=23% Similarity=0.271 Sum_probs=187.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++||+|+|+++.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-----~~ 2009 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-----SD 2009 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-----HH
Confidence 4479999999999753357999999999999999999999999999999999999999999999999874211 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||+||++. ++..+|++|++.+..... +. ..+..++.+.++++.++|.+. .++++++|||||||||+||+|
T Consensus 2010 ~r~~IGy~pQ~~~-L~~~LTv~E~L~l~a~l~-g~--~~~~~~~~v~~lLe~lgL~~~-~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2010 VHQNMGYCPQFDA-IDDLLTGREHLYLYARLR-GV--PAEEIEKVANWSIQSLGLSLY-ADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred HhhhEEEEecccc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHH
Confidence 3567999999974 667899999998742111 11 122334567789999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+||||.+++.++++|++++ +++|||++||++++++.+|||+++|++|+++..+.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999985 46899999999999999999999999999987653
No 284
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-48 Score=364.54 Aligned_cols=205 Identities=27% Similarity=0.318 Sum_probs=173.5
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+||+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~------------- 68 (556)
T PRK11819 3 AQYIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP------------- 68 (556)
T ss_pred ccEEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------------
Confidence 4568999999999962 25699999999999999999999999999999999999999999999853
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC--------------CCc-hhHH------------------HHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ--------------SGS-IQLK------------------EYLALNL 140 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~--------------~~~-~~~~------------------~~~~~~~ 140 (245)
..++||+||++. +++.+|+.||+.++.... ... .... .....++
T Consensus 69 --~~~i~~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (556)
T PRK11819 69 --GIKVGYLPQEPQ-LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQL 145 (556)
T ss_pred --CCEEEEEecCCC-CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHH
Confidence 136999999984 566789999998752100 000 0000 0113457
Q ss_pred HHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
.++++.+|+. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++
T Consensus 146 ~~~l~~~gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~ 221 (556)
T PRK11819 146 EIAMDALRCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRY 221 (556)
T ss_pred HHHHHhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHH
Confidence 7889999996 3 589999999999999999999999999999999999999999999999999874 59999999999
Q ss_pred HHHhhccEEEEEeCCeEEE
Q 035832 221 EMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 221 ~~~~~~d~v~~l~~G~i~~ 239 (245)
++..+||++++|++|+++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~ 240 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIP 240 (556)
T ss_pred HHHhhcCeEEEEeCCEEEE
Confidence 9999999999999999873
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-48 Score=364.07 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=177.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.+ +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+. ...
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---~~~ 320 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA---NEA 320 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH---HHH
Confidence 4589999999975 248999999999999999999999999999999999999999999999988743211 111
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcC----CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGW----PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
.++.++|+||++. ..+...++.+|..+.. ....... ........+.++++.+++.....++++.+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLL-DNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccccccc-CcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 2456999999863 2455677776633221 0000000 1122334577889999995323699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+||||++.+|++|||||||+|||+.+++.++++|.++.+ +.|||++|||++++..+|||+++|++|+++...
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998654
No 286
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.8e-48 Score=369.04 Aligned_cols=217 Identities=26% Similarity=0.395 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCCc-cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ-VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++++|++.. +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~----~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP----AEL 412 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH----HHH
Confidence 599999999997432 569999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++++|+||+| .+++.|++||+.++.+... ....... ....+.+.++.+ |++.. .......||||||||++||
T Consensus 413 ~~~i~~~~Q~~--~lf~~Ti~~Ni~~~~~~~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~-i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 413 RARMALVPQDP--VLFAASVMENIRYGRPDAT-DEEVEAAARAAHAHEFISALPEGYDTY-LGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred HHhceEEccCC--ccccccHHHHHhcCCCCCC-HHHHHHHHHHcCcHHHHHhCCCCCCce-eCCCCCcCCHHHHHHHHHH
Confidence 56899999998 4568899999998643211 0000000 001123334443 44432 3556678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++.+|+++|||||||+||+.+.+.+++.|+++.+++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEeeec
Confidence 99999999999999999999999999999999987789999999999876 5799999999999987643
No 287
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.5e-48 Score=367.69 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=174.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 334 ~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR----ESLR 408 (585)
T ss_pred eEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH----HHHH
Confidence 59999999999753 468999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.++|+||++. ++..|++||+.++.+... ........ ...+.+.+..+ |++.. .++....||||||||++|||
T Consensus 409 ~~i~~v~q~~~--lf~~ti~~Ni~~~~~~~~-~~~~~~a~~~~~~~~~i~~l~~g~~t~-~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 409 KSIATVFQDAG--LFNRSIRENIRLGREGAT-DEEVYEAAKAAAAHDFILKRSNGYDTL-VGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred hheEEEccCCc--cCcccHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhccccccch-hcCCCCCCCHHHHHHHHHHH
Confidence 78999999984 446899999998633211 11001100 11122333333 55543 56778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999877899999999999884 69999999999998654
No 288
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-48 Score=311.61 Aligned_cols=161 Identities=31% Similarity=0.492 Sum_probs=145.0
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ....++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~---~~~~~~ 75 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP---RDARRA 75 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH---HHHHhc
Confidence 578999999974 469999999999999999999999999999999999999999999999987753211 011245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+|| ||||||||++||||++.
T Consensus 76 ~i~~~~q--------------------------------------------------------LS~G~~qrl~laral~~ 99 (163)
T cd03216 76 GIAMVYQ--------------------------------------------------------LSVGERQMVEIARALAR 99 (163)
T ss_pred CeEEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 6888887 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|+++||||||++||+.+++.+.++|+++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999864 6899999999999999999999999999864
No 289
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-49 Score=332.81 Aligned_cols=196 Identities=32% Similarity=0.568 Sum_probs=172.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccH
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNV 115 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv 115 (245)
=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.++|.-+.+..........+++||||||+. .+|+++||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA-RLFpH~tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA-RLFPHYTV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc-ccccceEE
Confidence 47889987768999999999999999999999999999999999998765444333333467899999997 58999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 116 LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
+.|+.||.... .....+++.+.+|++++ ++++|.+|||||||||+|+|||+..|++||||||.++||...
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hL-L~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHL-LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHH-HhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999984321 12245677888999986 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC--ceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 196 RADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 196 ~~~i~~~l~~l~~~--~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++++-+|+++.++ ..|++|||.++++.++||+|++|++|++.+.+.
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~ 212 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGP 212 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCc
Confidence 99999999999754 799999999999999999999999999988664
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-48 Score=362.26 Aligned_cols=224 Identities=24% Similarity=0.267 Sum_probs=176.7
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++..... .
T Consensus 257 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~---~ 331 (490)
T PRK10938 257 NEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET---I 331 (490)
T ss_pred CCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC---H
Confidence 3568999999999964 4689999999999999999999999999999999999876 69999999986532110 0
Q ss_pred CCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
...++++||++|++...+. ..++.+++.+++...... ........+.+.++++.+++.+...++++.+|||||||||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 411 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL 411 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH
Confidence 1124679999998742222 246666655432110000 00011223457889999999861369999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHh-hccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAA-LVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~-~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++++ + .|||++|||++++.. +||++++|++|+++....
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999999864 4 579999999999987 599999999999886543
No 291
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.6e-48 Score=367.26 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=173.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~----~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL----DSWR 388 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998754321 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHH-----HHHHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL-----NLQRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+.++|++|+|. + +..|++||+.++.+.. . ..+... .+.+.+..+ |++.. .+.....||||||||+
T Consensus 389 ~~i~~v~q~~~-l-f~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~l~~~i~~lp~gl~t~-~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 389 SRLAVVSQTPF-L-FSDTVANNIALGRPDA--T---QQEIEHVARLASVHDDILRLPQGYDTE-VGERGVMLSGGQKQRI 460 (569)
T ss_pred hheEEEccCCe-e-ccccHHHHHhcCCCCC--C---HHHHHHHHHHcCCHHHHHhCcCcccce-ecCCCCcCCHHHHHHH
Confidence 78999999984 4 4679999999863221 1 111111 111222222 34432 4566788999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQRGN 532 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999987789999999999876 4699999999999987653
No 292
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.4e-47 Score=310.20 Aligned_cols=164 Identities=30% Similarity=0.427 Sum_probs=146.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------~ 64 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------E 64 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------------c
Confidence 4789999999643 46999999999999999999999999999999999999999999999641 4
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|++|++. ++..|+.||+.++ .+.+||||||||++|||||+.
T Consensus 65 ~i~~~~q~~~--~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 65 DLLFLPQRPY--LPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred eEEEECCCCc--cccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 6999999974 3467999998642 356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||++||+.+++.+.++|+++ +.|+|++|||++.. .+||++++|+++.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999987 48999999999865 6999999999764
No 293
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-50 Score=315.05 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=181.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++++.+.-+ +.++|+++||++++||+++|+||||||||||+|+++-|++|++|+++|.|+++..... ..+|
T Consensus 3 lle~kq~~y~a~--~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p----ea~R 76 (223)
T COG4619 3 LLELKQVGYLAG--DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP----EAYR 76 (223)
T ss_pred chHHHHHHhhcC--CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh----HHHH
Confidence 456677655443 4679999999999999999999999999999999999999999999999999865432 3457
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.+|+|+.|.|. + +..||++|+.|++..... +.....+.++++++++.+..+++.+.+||||||||++|+|-|.
T Consensus 77 q~VsY~~Q~pa-L-fg~tVeDNlifP~~~r~r-----r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 77 QQVSYCAQTPA-L-FGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHHHcCcc-c-cccchhhccccchHHhcc-----CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 89999999995 4 578999999997432211 1123456788999999988889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.-|++||||||||+||+.+++.+.++|.++- + +.+++.||||.+++.+++|+++-+..|++=.
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999999999999999985 3 5899999999999999999999999987643
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=338.31 Aligned_cols=226 Identities=30% Similarity=0.399 Sum_probs=193.9
Q ss_pred CcceEEEEeEEEECCCC---------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPGT---------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
..+.++.+++.+.|+-. ...+++++||++++||.++|+|+||||||||-++|.+|++++ |+|+|+|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 35579999999888521 245899999999999999999999999999999999999876 99999999998
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..+...... .|+++-+|||||...+ +.+||.+-+.-|+.-.. ......+..+++.++|+.+||+....++||+++||
T Consensus 352 ~~~~~~mrp-lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 352 GLSRKEMRP-LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccChhhhhh-hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 765544333 3678999999996433 56899988887743211 11224455678899999999998768999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||++||||++.+|++++||||||+||...+.+++++|+++++ +.+-+|||||+..+..+||+|++|++|+|+.++
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999999999999999999964 589999999999999999999999999999876
Q ss_pred c
Q 035832 242 R 242 (245)
Q Consensus 242 ~ 242 (245)
.
T Consensus 510 ~ 510 (534)
T COG4172 510 P 510 (534)
T ss_pred C
Confidence 5
No 295
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=360.56 Aligned_cols=198 Identities=22% Similarity=0.287 Sum_probs=170.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 317 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------- 381 (530)
T PRK15064 317 RNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------- 381 (530)
T ss_pred CceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------
Confidence 358999999999964 46999999999999999999999999999999999999999999998641
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++||+||++.. ++...|+.+|+.+... .. .....+.++++.+++.....++++.+|||||||||+|||
T Consensus 382 --~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 451 (530)
T PRK15064 382 --ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---EG-----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGK 451 (530)
T ss_pred --eEEEEEcccccccCCCCCcHHHHHHHhcc---CC-----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHH
Confidence 469999999742 3345799999864210 00 112356788999999522369999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||+.+|++|||||||++||+.+++.+++.|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~ 515 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVD 515 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999987 3599999999999999999999999999973
No 296
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.2e-48 Score=362.60 Aligned_cols=207 Identities=31% Similarity=0.440 Sum_probs=166.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~----~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA----DSWR 395 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH----HHHH
Confidence 599999999997644579999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++||+|+|. +++.|++||+.++.+... ...... .....+.+.++.+ |++.. ......+||||||||++|||
T Consensus 396 ~~i~~v~Q~~~--lf~~ti~~Ni~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 396 DQIAWVPQHPF--LFAGTIAENIRLARPDAS-DAEIRRALERAGLDEFVAALPQGLDTL-IGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred hheEEEcCCCc--ccCcCHHHHHhccCCCCC-HHHHHHHHHHcCcHHHHHhCcccccch-hccccccCCHHHHHHHHHHH
Confidence 78999999984 456899999998633211 000000 0011122333333 33332 45567789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
||+.+|+++|||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+ +.||++++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-HhCCEEEeC
Confidence 9999999999999999999999999999999987789999999999887 579999875
No 297
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-47 Score=326.96 Aligned_cols=203 Identities=20% Similarity=0.271 Sum_probs=169.3
Q ss_pred eEEEEeEEEECCC------------------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 17 CLEVRDVSYRPPG------------------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 17 ~l~~~~l~~~y~~------------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
.++++||++.|.. ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4788888876632 2346999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCC
Q 035832 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDP 158 (245)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (245)
+|. +++++|.+. .....|+.+|+.++.... .. . .......+.++++.+++.+. .++++
T Consensus 84 ~g~-----------------~~~~~~~~~-~~~~~tv~enl~~~~~~~-~~-~-~~~~~~~~~~~l~~~~l~~~-~~~~~ 141 (264)
T PRK13546 84 NGE-----------------VSVIAISAG-LSGQLTGIENIEFKMLCM-GF-K-RKEIKAMTPKIIEFSELGEF-IYQPV 141 (264)
T ss_pred CCE-----------------EeEEecccC-CCCCCcHHHHHHHHHHHc-CC-C-HHHHHHHHHHHHHHcCCchh-hcCCc
Confidence 763 345666653 445679999997642111 11 1 12233446678888899875 79999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+|||||+||++||||++.+|++|||||||+|||+.+++.+++.|.++.+ +.|||++||+++++..+||++++|++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 222 ~~~g 225 (264)
T PRK13546 222 KDYG 225 (264)
T ss_pred EEeC
Confidence 8654
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.1e-47 Score=321.91 Aligned_cols=191 Identities=28% Similarity=0.391 Sum_probs=159.5
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHH
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDE 118 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~ 118 (245)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++++|+||++...+ +..|+.+|
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------GWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---------hhCcEEEecccccccCCCCccHHHH
Confidence 5789999999999999999999999999999999999999976521 2457999999985322 34799999
Q ss_pred HHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 035832 119 VIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197 (245)
Q Consensus 119 l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~ 197 (245)
+.++........ .........+.++++.+++.+. .++++.+||||||||++|||||+.+|+++||||||++||+.+++
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~ 150 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL-ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 987532110000 0111223457889999999875 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 198 DVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 198 ~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+.++|+++++ +.|+|++|||++++..+||+++++ +|+++..+
T Consensus 151 ~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 151 LLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194 (223)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 99999999864 689999999999999999999999 79998654
No 299
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=347.86 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=172.0
Q ss_pred CcceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..+|++++||++.|+++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--------- 88 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--------- 88 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------
Confidence 35589999999999753 24699999999999999999999999999999999999999999999987531
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++ .+ .+++.+|+.||+.+..... .. ......+.+.++++.+++.+. .++++.+||||||||++||
T Consensus 89 -----~i~~---~~-~l~~~lTV~EnL~l~~~~~-~~--~~~e~~e~i~elLe~lgL~~~-ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -----LIAI---SS-GLNGQLTGIENIELKGLMM-GL--TKEKIKEIIPEIIEFADIGKF-IYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred -----eEEe---cc-ccCCCCcHHHHHHhhhhhc-CC--CHHHHHHHHHHHHHHcCChhH-hhCCcccCCHHHHHHHHHH
Confidence 1222 22 1344579999998742111 11 112233456788999999875 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.+++.|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G 225 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999864 689999999999999999999999999998654
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=337.57 Aligned_cols=228 Identities=28% Similarity=0.417 Sum_probs=190.3
Q ss_pred CCcceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCC
Q 035832 13 CDYSCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDG 85 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~ 85 (245)
++++.|+++|+++.|. ++...++++|||+|++||.+||+|+||||||-..+.++||++. -+|+|.|+|+++..
T Consensus 2 ~~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CCCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 4567899999998884 3456799999999999999999999999999999999999964 37999999999877
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCcc-cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCC
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLS 162 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS 162 (245)
.+.......+..+|+++||+|...+++. |+...+.-......+ ...+..+.++.++|+.+|+.+ ..++++|++||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg--~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG--LSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 6554445555678999999997655543 665555443111111 123445667889999999964 24688999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||+||+||+.+|++||+||||.+||...+.+++++|+++++ ++++++||||+..+..++|||++|.+|+++..
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999974 58999999999999999999999999999876
Q ss_pred cc
Q 035832 241 QR 242 (245)
Q Consensus 241 ~~ 242 (245)
+.
T Consensus 240 ~~ 241 (534)
T COG4172 240 GT 241 (534)
T ss_pred Cc
Confidence 53
No 301
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-47 Score=314.79 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=160.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... +
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--------~ 69 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--------K 69 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--------h
Confidence 4889999999964 34554 99999999999999999999999999999999999999999998763211 2
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|++|++. +++..|+.+|+.+..... . ..+.+.++++.+++.+. .++++.+||||||||++||||++
T Consensus 70 ~~~~~~~~~~~-~~~~~tv~~~l~~~~~~~-~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 70 PYCTYIGHNLG-LKLEMTVFENLKFWSEIY-N-------SAETLYAAIHYFKLHDL-LDEKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred hhEEeccCCcC-CCccCCHHHHHHHHHHhc-c-------cHHHHHHHHHHcCCHhh-hccChhhCCHHHHHHHHHHHHHh
Confidence 45899999874 556789999998752110 0 12346678899999865 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v 229 (245)
.+|+++||||||+|||+.+++.+.++|++.. ++.|+|++||+++++.. +|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 9999999999999999999999999998664 46899999999998754 6654
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-46 Score=355.86 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=171.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ +
T Consensus 319 ~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------- 384 (552)
T TIGR03719 319 GDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------- 384 (552)
T ss_pred CCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----------
Confidence 3568999999999964 4699999999999999999999999999999999999999999999842 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+|||+||++..+++..|+.+|+.++....... .. .....++++.+++.....++++.+|||||||||+|||
T Consensus 385 ---~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 385 ---VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLG---KR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred ---eEEEEEeCCccccCCCCcHHHHHHhhccccccC---cc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 159999999643566789999998863211110 01 1134568999999643358999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC-CeEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM-GGFLV 239 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~-G~i~~ 239 (245)
||+.+|++|||||||+|||+.+++.++++|+++. .|||+||||++++..+||++++|++ |+++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 9999999999999999999999999999999984 4899999999999999999999987 57654
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-46 Score=356.08 Aligned_cols=203 Identities=28% Similarity=0.315 Sum_probs=170.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------------- 66 (552)
T ss_pred EEEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------
Confidence 479999999999622 4699999999999999999999999999999999999999999999853
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-------------CchhHH--------------------HHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-------------GSIQLK--------------------EYLALNLQR 142 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~~~--------------------~~~~~~~~~ 142 (245)
..+|||+||++. +++.+|+.||+.++..... ...... .....++.+
T Consensus 67 ~~~i~~v~Q~~~-~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (552)
T TIGR03719 67 GIKVGYLPQEPQ-LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI 145 (552)
T ss_pred CCEEEEEeccCC-CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 136999999985 5667899999987531100 000000 001234567
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHH
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM 222 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~ 222 (245)
+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++. .|||+||||++++
T Consensus 146 ~l~~~~l~~--~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~ 221 (552)
T TIGR03719 146 AMDALRCPP--WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFL 221 (552)
T ss_pred HHhhCCCCc--ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHH
Confidence 788888853 588999999999999999999999999999999999999999999999998873 5999999999999
Q ss_pred HhhccEEEEEeCCeEEE
Q 035832 223 AALVDHSWRMDMGGFLV 239 (245)
Q Consensus 223 ~~~~d~v~~l~~G~i~~ 239 (245)
..+||++++|++|+++.
T Consensus 222 ~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 222 DNVAGWILELDRGRGIP 238 (552)
T ss_pred HhhcCeEEEEECCEEEE
Confidence 99999999999999863
No 304
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-47 Score=345.47 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=175.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+ +++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|++||+++...... ..|
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~----SlR 424 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLE----SLR 424 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChH----Hhh
Confidence 49999999999863 569999999999999999999999999999999999999 899999999998654322 347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+-||||||+. .+++.|+.+|+.+|.+......-.+......+.+.+..+ |-.. ....+...|||||||||+||||
T Consensus 425 ~~Ig~VPQd~--~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T-~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 425 QSIGVVPQDS--VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQT-LVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred hheeEeCCcc--cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchh-hHhhcccccccchHHHHHHHHH
Confidence 7899999997 456789999999985443211000000111123333333 2222 2456677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+|+++++|||||+||.++.+++++.+.....++|+|+|-|+++.+. .||+|+++++|++...+.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEEEEECCeeEEecc
Confidence 9999999999999999999999999999999767899999999999875 689999999999976553
No 305
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.1e-47 Score=359.81 Aligned_cols=185 Identities=35% Similarity=0.521 Sum_probs=155.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++... . ..++
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~----~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-Q----DELR 407 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-H----HHHH
Confidence 59999999999753 4699999999999999999999999999999999999999999999999998643 2 2356
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++++||||+|. +++.|++||+.++.+... ++++.++++..++ +.. .......|||||
T Consensus 408 ~~i~~V~Q~~~--lF~~TI~eNI~~g~~~~~---------~e~i~~al~~a~l~~~i~~lp~GldT~-ige~G~~LSGGQ 475 (529)
T TIGR02868 408 RRISVFAQDAH--LFDTTVRDNLRLGRPDAT---------DEELWAALERVGLADWLRSLPDGLDTV-LGEGGARLSGGE 475 (529)
T ss_pred hheEEEccCcc--cccccHHHHHhccCCCCC---------HHHHHHHHHHcCCHHHHHhCcccccch-hccccCcCCHHH
Confidence 78999999983 557899999999733211 1123334444433 322 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecCh
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~ 219 (245)
|||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||++
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999887789999999984
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=362.03 Aligned_cols=221 Identities=27% Similarity=0.427 Sum_probs=185.1
Q ss_pred ceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+||+++|++++|+++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999632 246999999999999999999999999999999999999999999999999875432111001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. +++..|+.||+.+..... .. ...+..+++.++++.+|+.+. .++.+.+||+||+||++|||
T Consensus 83 ~~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~lgl~~~-~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 83 LRREHFGFIFQRYH-LLSHLTAAQNVEVPAVYA-GL--ERKQRLLRAQELLQRLGLEDR-VEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHhccEEEEeCCcc-cCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hcCCcccCCHHHHHHHHHHH
Confidence 12467999999984 677789999998742111 11 122334567889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.+.++|+++++ +.|+|++||+++.+. .||++++|++|+++.++.
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999864 689999999999875 699999999999987654
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.3e-46 Score=353.56 Aligned_cols=201 Identities=25% Similarity=0.314 Sum_probs=170.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------ 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------ 386 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------
Confidence 458999999999964 4699999999999999999999999999999999999999999999842 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++||+||++..+++..|+.+|+.++....... .. ......+++.+++.....++++.+|||||||||+||||
T Consensus 387 --~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 387 --VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG---NR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred --eEEEEEeCchhhcCCCCCHHHHHHhhccccccc---cc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 159999998633566789999998763211100 00 11244689999996433589999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC-CeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM-GGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~-G~i~~ 239 (245)
|+.+|++|||||||+|||+.+++.++++|.++. .|||++|||++++..+||++++|++ |++..
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence 999999999999999999999999999999874 4899999999999999999999996 67764
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-47 Score=389.15 Aligned_cols=217 Identities=26% Similarity=0.357 Sum_probs=174.9
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC------------------------
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP------------------------ 71 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p------------------------ 71 (245)
.|+++||+|+|+++ +.++|+|+||+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 49999999999743 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 72 ------------------------------TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 72 ------------------------------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
++|+|+++|.++..... ..+|++||||+|+|. ++..|++||+.+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~----~~lR~~i~~V~Qep~--LF~gTIreNI~~ 1318 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL----KDLRNLFSIVSQEPM--LFNMSIYENIKF 1318 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH----HHHHhhccEeCCCCc--cccccHHHHHhc
Confidence 69999999999865432 235788999999983 458999999999
Q ss_pred cCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 035832 122 GWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198 (245)
Q Consensus 122 ~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~ 198 (245)
+.+.... ..... .....+.+.++.+ |++.. .......||||||||++|||||+.+|+|||||||||+||+++.+.
T Consensus 1319 g~~~at~-eeI~~A~k~A~l~~fI~~LP~GydT~-VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1319 GKEDATR-EDVKRACKFAAIDEFIESLPNKYDTN-VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred CCCCCCH-HHHHHHHHHcCCHHHHHhCccccCCc-cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 8432110 00000 0011223344443 44433 456677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC----CeEEEecc
Q 035832 199 VVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM----GGFLVEQR 242 (245)
Q Consensus 199 i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~----G~i~~~~~ 242 (245)
|.+.|.++. +++|+|+|||++..+. .||+|++|++ |+++.+.+
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEec
Confidence 999999985 4799999999998765 6999999999 89775544
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=317.74 Aligned_cols=223 Identities=30% Similarity=0.415 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+++|+++|++++|++ +++|+|+|++|++||..+|+|||||||||||++++|.++|++|.+.+.|+....... ..
T Consensus 28 ~~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~---~~ 102 (257)
T COG1119 28 NEPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET---IF 102 (257)
T ss_pred CcceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc---hH
Confidence 4567999999999975 679999999999999999999999999999999999999999999999987754322 13
Q ss_pred CCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCch--hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSI--QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.+|++||||.-.-.. +....+++|-++.|+....+.+ ...+....++..+++.+|+.+. .+++..+||-||||||.
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCchhhcCHhHHHHHH
Confidence 457899999654322 2345678888876643222211 1233455678899999999985 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK---ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||...++.+.+.|.++.. ..++|+|||..+++....++++.+++|+++..+.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999999863 3799999999999999999999999999988653
No 310
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.1e-46 Score=357.72 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=173.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.+
T Consensus 316 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------- 381 (635)
T PRK11147 316 GKIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------- 381 (635)
T ss_pred CCceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-----------
Confidence 4568999999999964 46999999999999999999999999999999999999999999988 421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
-+|||++|++..+++..||.+|+.++....... . ....+.++++.+++.....++++.+|||||||||+|||
T Consensus 382 ---~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 382 ---LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN---G--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred ---cEEEEEeCcccccCCCCCHHHHHHhhccccccc---c--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 259999998644667789999998753211000 0 12346788999999642368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe-CCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD-MGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~-~G~i~~~ 240 (245)
||+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||.+++..+||++++|+ +|+++..
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 999999999999999999999999999999887 4599999999999999999999998 7998754
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-46 Score=321.32 Aligned_cols=186 Identities=27% Similarity=0.312 Sum_probs=156.3
Q ss_pred EECCCCccceeeeeeEEEc-----CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 25 YRPPGTQVDILNGVSFSLP-----EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~-----~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
|+|++. .+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------~i 63 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------TV 63 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------eE
Confidence 356543 346788888876 79999999999999999999999999999999999752 58
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|++|++. .++..||.|++.+..... .. ......++++.+++.+. .++++.+|||||||||+|||||+.+|
T Consensus 64 ~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~------~~~~~~~~l~~l~l~~~-~~~~~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 64 SYKPQYIK-ADYEGTVRDLLSSITKDF-YT------HPYFKTEIAKPLQIEQI-LDREVPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred EEeccccc-CCCCCCHHHHHHHHhhhc-cc------cHHHHHHHHHHcCCHHH-hhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999975 445789999987542110 00 01234678889999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+++||||||++||+.++..+.++|+++.+ ++|||++|||++++..+||++++|+++.
T Consensus 135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999853 5899999999999999999999997543
No 312
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-46 Score=361.03 Aligned_cols=212 Identities=26% Similarity=0.298 Sum_probs=173.5
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--cceEEEcCccCCCCCCCCCCCCCCC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--SGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++
T Consensus 71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~--------~~~~ 140 (659)
T PLN03211 71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--------QILK 140 (659)
T ss_pred cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--------hhcc
Confidence 3445555643 56999999999999999999999999999999999999885 8999999987632 1235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc----CCCCCCCCChHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS----LDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~iAr 173 (245)
++|||+|++. +++.+||+||+.+............++..++++++++.+||.+.. .++.+.+|||||||||+||+
T Consensus 141 ~i~yv~Q~~~-l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 141 RTGFVTQDDI-LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred ceEEECcccc-cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 6999999974 667789999998852111110011223345678899999997641 14467889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++|+++..+.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence 99999999999999999999999999999999874 689999999998 5889999999999999987653
No 313
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-46 Score=333.98 Aligned_cols=181 Identities=36% Similarity=0.525 Sum_probs=155.6
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc
Q 035832 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129 (245)
Q Consensus 50 liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~ 129 (245)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++. +|+.+|+.+|+.++..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~------~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~~-~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP------HLRHINMVFQSYA-LFPHMTVEENVAFGLKMRK-V 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------HHCCEEEEecCcc-ccCCCcHHHHHHHHHhhcC-C
Confidence 589999999999999999999999999999998743211 2467999999984 6778899999998632111 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-
Q 035832 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK- 208 (245)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~- 208 (245)
.......++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+
T Consensus 73 --~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 73 --PRAEIKPRVLEALRLVQLEEF-ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred --CHHHHHHHHHHHHHHcCCcch-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 122234567889999999875 7999999999999999999999999999999999999999999999999999853
Q ss_pred -CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 209 -ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 209 -~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.|+|++|||++++..+||++++|++|+++..+
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g 183 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIG 183 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 589999999999999999999999999998654
No 314
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-47 Score=307.76 Aligned_cols=221 Identities=28% Similarity=0.431 Sum_probs=193.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC-ccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG-YNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~ 94 (245)
+.|+++|++++|++ ..+|+++||++.+||.-+|||||||||||++.+|+|-.+|+.|+|+++| .++.+.+.. ..
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~---~I 78 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH---RI 78 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHH---HH
Confidence 67999999999975 5799999999999999999999999999999999999999999999999 787664422 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.+..||--||.|. .|...||+||+.++.......+ ......+.+++++|...||.+. .++....||-||||++
T Consensus 79 Ar~GIGRKFQ~Pt-Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-~~~~A~~LSHGqKQwL 156 (249)
T COG4674 79 ARAGIGRKFQKPT-VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-RDRLAALLSHGQKQWL 156 (249)
T ss_pred HHhccCccccCCe-ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-hhhhhhhhccchhhhh
Confidence 3567999999996 6889999999988643222111 1123345679999999999986 6999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
.|++.++++|++|+||||++|+-.+...+.-++|+.++...+|++|.|||.++..++++|-+|+.|.+..+++.
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999988753
No 315
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=356.72 Aligned_cols=198 Identities=29% Similarity=0.381 Sum_probs=168.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++||++.|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 309 ~~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 373 (638)
T PRK10636 309 PNPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK------------- 373 (638)
T ss_pred CCceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-------------
Confidence 4568999999999964 4699999999999999999999999999999999999999999999852
Q ss_pred CCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++||++|++. .+....++.+++... . . ......+.++++.+++.....++++.+|||||||||+||
T Consensus 374 --~~~igy~~Q~~~~~l~~~~~~~~~~~~~-~----~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 374 --GIKLGYFAQHQLEFLRADESPLQHLARL-A----P----QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred --CEEEEEecCcchhhCCccchHHHHHHHh-C----c----hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 125999999752 233445777776421 0 0 112345778899999964236899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+|+.+|++|||||||++||+.+++.+.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~ 507 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEP 507 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988 3599999999999999999999999999973
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.8e-45 Score=319.86 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=158.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.+.|+++|+++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 45579999999852 3689999999999999999999999999999999999999999999865
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~i 171 (245)
+++|++|++. ++ ..|+.+|+.++... ......... ...+.+.++.+... ....++.+.+||||||||++|
T Consensus 99 ----~i~yv~q~~~-l~-~~tv~enl~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l 170 (282)
T cd03291 99 ----RISFSSQFSW-IM-PGTIKENIIFGVSY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL 170 (282)
T ss_pred ----EEEEEeCccc-cc-ccCHHHHhhccccc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence 3899999974 44 46999999875221 100000000 00122233322211 011345678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.+.+ ..+.++.|||++||+++++ ..||++++|++|+++..+
T Consensus 171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g 240 (282)
T cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYG 240 (282)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999854 5666678999999999987 579999999999998654
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-46 Score=351.54 Aligned_cols=205 Identities=26% Similarity=0.299 Sum_probs=170.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 322 ~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP----EDYR 396 (547)
T ss_pred eEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH----HHHh
Confidence 59999999999743 469999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC-----CCCCChHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLAL 171 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~i 171 (245)
++++|++|++. +++.|+.+| + . . ..++.+.++++.+++... .+.. ..+||||||||++|
T Consensus 397 ~~i~~v~q~~~--lf~~ti~~n---~-~----~-----~~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 397 KLFSAVFTDFH--LFDQLLGPE---G-K----P-----ANPALVEKWLERLKMAHK-LELEDGRISNLKLSKGQKKRLAL 460 (547)
T ss_pred hheEEEecChh--HHHHhhccc---c-C----c-----hHHHHHHHHHHHcCCchh-hhccccCCCCCCCCHHHHHHHHH
Confidence 78999999983 456788776 1 1 0 112346677888888653 2221 45899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|||++.+|++|||||||++||+++.+.+.+.+.+.. .++|+|++||+++.+ ..||++++|++|+++...+.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSELTGE 533 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEEecCC
Confidence 999999999999999999999999999999987653 368999999999765 58999999999999876543
No 318
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-45 Score=350.86 Aligned_cols=196 Identities=29% Similarity=0.309 Sum_probs=170.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ . .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 337 ~~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------- 399 (590)
T PRK13409 337 RETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------- 399 (590)
T ss_pred CceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------------
Confidence 4568999999999964 2 5999999999999999999999999999999999999999999884
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++|+||++. .++..||.+|+.++... .. . ...+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 400 ---~~i~y~~Q~~~-~~~~~tv~e~l~~~~~~-~~----~---~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 400 ---LKISYKPQYIK-PDYDGTVEDLLRSITDD-LG----S---SYYKSEIIKPLQLERL-LDKNVKDLSGGELQRVAIAA 466 (590)
T ss_pred ---eeEEEeccccc-CCCCCcHHHHHHHHhhh-cC----h---HHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHHHHHH
Confidence 14899999975 55678999999875211 10 1 1235778999999865 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||+++|+ |++...
T Consensus 467 aL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 467 CLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceee
Confidence 99999999999999999999999999999999854 5899999999999999999999997 577654
No 319
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-46 Score=383.86 Aligned_cols=208 Identities=23% Similarity=0.280 Sum_probs=174.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+++..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~----~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL----TDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH----HHHH
Confidence 499999999996544579999999999999999999999999999999999999999999999999865432 2347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|+||||+|. + +..|+++|+..+. . .. ++++.++++.. |++.. ......+|||||
T Consensus 1310 ~~i~iVpQdp~-L-F~gTIr~NL~~~~-~--~s-------deei~~al~~a~l~~~I~~lp~GLdt~-v~e~G~~LSgGQ 1376 (1495)
T PLN03232 1310 RVLSIIPQSPV-L-FSGTVRFNIDPFS-E--HN-------DADLWEALERAHIKDVIDRNPFGLDAE-VSEGGENFSVGQ 1376 (1495)
T ss_pred hhcEEECCCCe-e-eCccHHHHcCCCC-C--CC-------HHHHHHHHHHcCCHHHHHhCcCCCCce-ecCCCCCCCHHH
Confidence 88999999984 4 4679999998652 1 11 11233334433 44432 455667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.+.
T Consensus 1377 rQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1377 RQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998778999999999998865 89999999999987653
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.8e-46 Score=382.17 Aligned_cols=208 Identities=24% Similarity=0.308 Sum_probs=174.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|.++..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l----~~LR 1312 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL----MDLR 1312 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH----HHHH
Confidence 599999999996543479999999999999999999999999999999999999999999999999865432 2347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|++|||+|. ++..|+++|+..+. . .. ++.+.++++.. |++.. ......+|||||
T Consensus 1313 ~~IsiVpQdp~--LF~GTIreNLd~~~-~--~t-------deei~~Al~~a~l~~~I~~lp~GLdt~-Vge~G~nLSgGQ 1379 (1622)
T PLN03130 1313 KVLGIIPQAPV--LFSGTVRFNLDPFN-E--HN-------DADLWESLERAHLKDVIRRNSLGLDAE-VSEAGENFSVGQ 1379 (1622)
T ss_pred hccEEECCCCc--cccccHHHHhCcCC-C--CC-------HHHHHHHHHHcCcHHHHHhCccccCcc-ccCCCCCCCHHH
Confidence 88999999994 45679999998652 1 11 11233333333 44432 455667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.+.
T Consensus 1380 rQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDT 1455 (1622)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998778999999999999865 89999999999987653
No 321
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.3e-45 Score=349.50 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=169.6
Q ss_pred ceEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..|+++||+|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~---- 411 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR---- 411 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 359999999999752 2359999999999999999999999999999999999999999999999998864322
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC------CCCCChHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD------PHSLSGGYK 166 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqk 166 (245)
..+++.++|++|++. ++..|+.+|.. + ...++++.++++.+++.+. .++. ...||||||
T Consensus 412 ~~~~~~i~~v~q~~~--lf~~ti~~n~~---~---------~~~~~~~~~~~~~~~l~~~-~~~lp~g~~t~~~LSgGq~ 476 (555)
T TIGR01194 412 DDYRDLFSAIFADFH--LFDDLIGPDEG---E---------HASLDNAQQYLQRLEIADK-VKIEDGGFSTTTALSTGQQ 476 (555)
T ss_pred HHHHhhCcEEccChh--hhhhhhhcccc---c---------chhHHHHHHHHHHcCCchh-hcccccccCCcccCCHHHH
Confidence 123577999999983 45678888731 1 0123346678888888764 3332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK-HLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~-~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||++.+|+++||||||++||+.+.+.+.+.+. .++ +++|+|++||+++.+ ..||+|++|++|+++.+-
T Consensus 477 qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999988654 454 469999999999865 589999999999998653
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=351.57 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=162.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ +++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--------------- 63 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--------------- 63 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 5899999999974 46999999999999999999999999999999999999999999999753
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCC--------------CCC-Cc----hh-H----HHHHHHHHHHHHHHcCCCCc
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWP--------------RQS-GS----IQ-L----KEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~--------------~~~-~~----~~-~----~~~~~~~~~~~l~~~~l~~~ 152 (245)
..++|++|++. .+ ..++.+++.-... ... .. .. . ......++.++++.+|+...
T Consensus 64 ~~i~~~~q~~~-~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~ 141 (638)
T PRK10636 64 WQLAWVNQETP-AL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE 141 (638)
T ss_pred CEEEEEecCCC-CC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch
Confidence 13677777542 11 2344333321100 000 00 00 0 01123467889999999732
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
.+++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|
T Consensus 142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 368999999999999999999999999999999999999999999999999886 469999999999999999999999
Q ss_pred eCCeEEE
Q 035832 233 DMGGFLV 239 (245)
Q Consensus 233 ~~G~i~~ 239 (245)
++|+++.
T Consensus 220 ~~G~i~~ 226 (638)
T PRK10636 220 EQQSLFE 226 (638)
T ss_pred eCCEEEE
Confidence 9999964
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-45 Score=316.71 Aligned_cols=203 Identities=27% Similarity=0.276 Sum_probs=165.0
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----------EcCccCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN-----------IRGYNNDGEPNN 89 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~ 89 (245)
.+++++|+++ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|+ ++|+++......
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999643 358999995 999999999999999999999999999999999996 677765322110
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.. .....++|++|++. +++ .++.+++.+... .......+.++++.+|+.+. .++.+.+||||||||+
T Consensus 82 ~~--~~~~~i~~~~~~~~-~~~-~~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv 148 (255)
T cd03236 82 LL--EGDVKVIVKPQYVD-LIP-KAVKGKVGELLK--------KKDERGKLDELVDQLELRHV-LDRNIDQLSGGELQRV 148 (255)
T ss_pred hh--hcccceeeecchhc-cCc-hHHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHH
Confidence 00 00124889999874 444 477777765321 11123456788999999875 6899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|||||+.+|+++||||||++||+.+++.+.++|+++++ ++|||++|||++++..+||++++|+ |++.+
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 999999999999999999999999999999999999875 6899999999999999999999996 66654
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.5e-45 Score=288.09 Aligned_cols=144 Identities=34% Similarity=0.478 Sum_probs=134.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. .
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~ 63 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------V 63 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------E
Confidence 478999999964 36999999999999999999999999999999999999999999999762 3
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+|| ||+||+||++|||||+.
T Consensus 64 ~i~~~~~--------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 64 KIGYFEQ--------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEEEEcc--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 5889888 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||++||+.++..+.+.|+++ +.|+|++||+++++..+||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999987 3699999999999999999999999985
No 325
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-46 Score=303.26 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=180.7
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
|+.+.|+.+.|..+ .+++|+++||+|.+|+++.|+|.||||||||+++|+|-++|++|+|.++|.++++.+..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~---- 76 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA---- 76 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHH----
Confidence 56788888766432 46799999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCC-CchhH--HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHH
Q 035832 94 LPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQS-GSIQL--KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkq 167 (245)
.+...++-|||+|.. .++.+|+.||++++..+.. +.... .........+.++.+ |+++. ++.++.-|||||||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenr-L~~~iglLSGGQRQ 155 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR-LSDRIGLLSGGQRQ 155 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhh-hcChhhhccchHHH
Confidence 234678899999953 4678999999998633211 11101 111222334445554 66765 78999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
-++|++|.++.|++|+|||-|++|||.+.+.++++-.++-+ +.|.+||||+|+.+..|.+|.++|++|+|+.+-
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999999999999999999999999998853 479999999999999999999999999999763
No 326
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-45 Score=359.99 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
-|+++||+|.||.+ +.++|+|+||++++|+.+||+|||||||||.+.+|-.++.|++|.|.+||+|+.+.+. .++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl----~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL----KWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCH----HHH
Confidence 39999999999853 4579999999999999999999999999999999999999999999999999976543 346
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
|+++|.|.|+|. ++..|++||+.+|........-........+.+.+..+ |.+.. ...+..+||||||||+||||
T Consensus 1063 R~~i~lVsQEP~--LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~-vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPV--LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR-VGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHhcceeccCch--hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCc-cCcccCcCCchHHHHHHHHH
Confidence 889999999994 45789999999983221100000111112233334333 45443 56778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+++||++|||||.||+||.++.+.+.+.|.+...+.|.|+|.|.+..+. -||.|+|+++|++++++
T Consensus 1140 AilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred HHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999999999875 69999999999998765
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.7e-45 Score=350.43 Aligned_cols=199 Identities=25% Similarity=0.346 Sum_probs=164.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|+++ ..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-------------- 570 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-------------- 570 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--------------
Confidence 4689999999999642 3689999999999999999999999999999999999999999998853
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||++|++. ..+++.++..+......... ....+.++++.+++.....++++.+|||||||||+||||
T Consensus 571 -~~~igyv~Q~~~---~~l~~~~~~~~~~~~~~~~~-----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 571 -KVRMAVFSQHHV---DGLDLSSNPLLYMMRCFPGV-----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred -ceeEEEEecccc---ccCCcchhHHHHHHHhcCCC-----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHH
Confidence 236999999862 23344444322110000000 123567889999997433688999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+.+|++|||||||++||+.+++.+.+.|.+. +.|||+||||++++..+||++++|++|+++.
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999888775 3599999999999999999999999999974
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.2e-45 Score=306.99 Aligned_cols=184 Identities=20% Similarity=0.168 Sum_probs=149.2
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-EcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN-IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .++ +.+ .+++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------~~~---~~~-~l~~~ 63 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------PLG---ANS-FILPG 63 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------ccc---ccc-ccCCc
Confidence 79999999999999999999999999999999999999999997 655321 012 233 25567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
+|+.||+.+........ .... ...+.+.++++.. .++++.+||+|||||++|||||+.+|+++||||||+++|
T Consensus 64 ltv~enl~~~~~~~~~~---~~~~---~~~~~~~~~l~~~-~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 64 LTGEENARMMASLYGLD---GDEF---SHFCYQLTQLEQC-YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred CcHHHHHHHHHHHcCCC---HHHH---HHHHHHHhChhHH-hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 89999998742211111 1111 1223455677764 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+++.+++.+.+..++.++|++||+++++..+||++++|++|+++..+.
T Consensus 137 ~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 186 (213)
T PRK15177 137 NATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCED 186 (213)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCC
Confidence 99999999988655445789999999999999999999999999987653
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.5e-45 Score=377.42 Aligned_cols=209 Identities=22% Similarity=0.250 Sum_probs=174.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+++..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l----~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL----RELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH----HHHH
Confidence 499999999997644469999999999999999999999999999999999999999999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
++||||||+|. ++..|+++|+... .. .. ++.+.++++.+++.+. .......+||||||
T Consensus 1384 ~~I~iVpQdp~--LF~gTIreNIdp~-~~--~s-------deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1384 RQFSMIPQDPV--LFDGTVRQNVDPF-LE--AS-------SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred hcceEECCCCc--cccccHHHHhCcc-cC--CC-------HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 88999999994 4567999999643 11 11 1235555666555431 12344568999999
Q ss_pred HHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQV-PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+++ |++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+. .||+|++|++|+++..+.
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~Gt 1527 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMGS 1527 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEECC
Confidence 999999999995 899999999999999999999999998877899999999999875 689999999999987543
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.6e-45 Score=374.71 Aligned_cols=208 Identities=21% Similarity=0.198 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~----~~LR 1359 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL----HDLR 1359 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH----HHHH
Confidence 499999999997544479999999999999999999999999999999999999999999999999865432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|++|||+|. ++..|+++|+... .. .. ++.+.++++.+ |++.. .......|||||
T Consensus 1360 ~~i~iVpQdp~--LF~gTIr~NLdp~-~~--~s-------deei~~al~~a~l~~~I~~lp~GLdt~-v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1360 FKITIIPQDPV--LFSGSLRMNLDPF-SQ--YS-------DEEVWWALELAHLKTFVSALPDKLDHE-CAEGGENLSVGQ 1426 (1522)
T ss_pred hcCeEECCCCc--ccCccHHHHcCcc-cC--CC-------HHHHHHHHHHcCcHHHHhhCccCCCce-ecCCCCcCCHHH
Confidence 88999999994 4467999999732 11 11 11233344443 34432 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+.+|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+. .||||++|++|++++.+.
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998877899999999999876 589999999999987653
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.8e-44 Score=343.42 Aligned_cols=202 Identities=27% Similarity=0.347 Sum_probs=160.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+++|++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.
T Consensus 2 ~~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-------------- 65 (635)
T PRK11147 2 SLISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-------------- 65 (635)
T ss_pred cEEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--------------
Confidence 47999999999974 46999999999999999999999999999999999999999999998752
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcC-----------------CCCCCc--h----h----H----HHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGW-----------------PRQSGS--I----Q----L----KEYLALNLQRAI 144 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~-----------------~~~~~~--~----~----~----~~~~~~~~~~~l 144 (245)
..+++++|.+. .....++.+++..+. ...... . . . ......++.+++
T Consensus 66 -~~~~~l~q~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (635)
T PRK11147 66 -LIVARLQQDPP-RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVL 143 (635)
T ss_pred -CEEEEeccCCC-CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 12456665542 111223333321100 000000 0 0 0 001234678889
Q ss_pred HHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 145 ~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
+.+|+. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++. .|||+||||.+++..
T Consensus 144 ~~lgl~---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~ 218 (635)
T PRK11147 144 AQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRN 218 (635)
T ss_pred HhCCCC---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHH
Confidence 999996 378999999999999999999999999999999999999999999999999884 599999999999999
Q ss_pred hccEEEEEeCCeEEEe
Q 035832 225 LVDHSWRMDMGGFLVE 240 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~ 240 (245)
+||++++|++|+++..
T Consensus 219 ~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 219 MATRIVDLDRGKLVSY 234 (635)
T ss_pred hcCeEEEEECCEEEEe
Confidence 9999999999999753
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.4e-44 Score=367.19 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=181.3
Q ss_pred ceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 90 (245)
.+++++||++.|+ ++.+.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----- 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-----
Confidence 4689999999985 223579999999999999999999999999999999999997 788999999987631
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC----CCChHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH----SLSGGYK 166 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqk 166 (245)
..++.+|||+|++. +++..||+||+.+.............+..++++++++.+++.+. +++.++ +||||||
T Consensus 833 ---~~~~~i~yv~Q~~~-~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 833 ---SFQRSIGYVQQQDL-HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred ---hhhcceeeeccccc-CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-CCCeeCCCCCCCCHHHh
Confidence 13567999999974 66789999999986321110001122334568899999999875 688777 7999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhH-HHhhccEEEEEeCC-eEEEecc
Q 035832 167 RRLALAIQLVQVPD-LLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKE-MAALVDHSWRMDMG-GFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~-~~~~~d~v~~l~~G-~i~~~~~ 242 (245)
|||+||+||+.+|+ +|+|||||+|||+.++..+++.|++++ +++|||++||+++. +...||++++|++| +++..+.
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999996 46899999999986 45789999999997 8887654
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-44 Score=369.85 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=170.7
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE-cCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI-RGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~ 94 (245)
.|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++...+. .+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~----~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL----KW 457 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH----HH
Confidence 59999999999753 246999999999999999999999999999999999999999999999 4677643221 23
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--------ch------------------------------hH----
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--------SI------------------------------QL---- 132 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--------~~------------------------------~~---- 132 (245)
++++||||+|+|. +| ..|++||+.++...... .. ..
T Consensus 458 lr~~Ig~V~Q~~~-LF-~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 458 WRSKIGVVSQDPL-LF-SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHhccEeccccc-ch-hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 4678999999984 44 57999999987321000 00 00
Q ss_pred ------HHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 035832 133 ------KEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 133 ------~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~ 196 (245)
.....+.+.++++.+++.+. ..++.+.+||||||||++|||||+.+|++|||||||++||+.+.
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 00112345666666665432 13567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 197 ADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 197 ~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 999999999863 68999999999987 5899999999873
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=293.12 Aligned_cols=223 Identities=25% Similarity=0.330 Sum_probs=187.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+||+++||+++..+. +.+|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+++...+..++
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER-- 78 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER-- 78 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH--
Confidence 579999999998652 47999999999999999999999999999999999996 6789999999999987664432
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~iA 172 (245)
.+..+.+.||+|. -++..++.+.+..+............+....+++.++.+++++..++|+++ .+|||||+|..|+
T Consensus 79 -Ar~GifLafQ~P~-ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil 156 (251)
T COG0396 79 -ARAGIFLAFQYPV-EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL 156 (251)
T ss_pred -HhcCCEEeecCCc-cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence 3567999999995 678889988887653211111000123455688899999999866899887 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEeccC
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~~~ 243 (245)
.+++.+|++.|||||-||||..+.+.+.+.+..+++ +.++++|||.-+.+..+ .|+|.+|.+|+|+.++++
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999975 68999999998866544 399999999999998764
No 335
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3e-44 Score=369.88 Aligned_cols=208 Identities=22% Similarity=0.226 Sum_probs=173.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+. ..+|
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~----~~lR 1291 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL----QTWR 1291 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH----HHHH
Confidence 599999999997544679999999999999999999999999999999999997 79999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
++++||||+|. ++..|+++|+... . .. .++.+.++++.+++.+. ........||||||
T Consensus 1292 ~~is~IpQdp~--LF~GTIR~NLdp~-~--~~-------tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1292 KAFGVIPQKVF--IFSGTFRKNLDPY-E--QW-------SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred hceEEEeCCCc--cCccCHHHHhCcc-c--CC-------CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 88999999994 4567999999642 1 11 12235556666655321 12334457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|||+|||+++.+. .||+|++|++|+++..+.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIlvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFLVIEGSSVKQYDS 1434 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999999876 489999999999986543
No 336
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.5e-44 Score=341.88 Aligned_cols=203 Identities=28% Similarity=0.291 Sum_probs=172.0
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++... ..++.+||++|++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~-------~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK-------EMRAISAYVQQDDL 109 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH-------HHhhhceeeccccc
Confidence 467999999999999999999999999999999999999885 89999999876421 23567999999984
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC------CCChHHHHHHHHHHHHhhCCCE
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH------SLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~iAral~~~p~l 181 (245)
+++.+||+||+.|+............+..++++++++.+|+.+. .+..++ .|||||||||+|||+|+.+|++
T Consensus 110 -~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v 187 (617)
T TIGR00955 110 -FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC-ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187 (617)
T ss_pred -cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhc-CcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence 67788999999986322111111123345578899999999875 577776 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.++||++++|++|+++..+.
T Consensus 188 lllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred EEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 999999999999999999999999975 689999999995 7889999999999999987654
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.9e-43 Score=340.22 Aligned_cols=196 Identities=22% Similarity=0.319 Sum_probs=161.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 449 ~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------- 513 (659)
T TIGR00954 449 DNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------- 513 (659)
T ss_pred CCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------------
Confidence 3469999999999643 4699999999999999999999999999999999999999999998742
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC---------CCCCChHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD---------PHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGq 165 (245)
+++++|+||+|. ++ ..|++||+.++...... .......+++.++++.+++.+. .+++ +.+|||||
T Consensus 514 -~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGq 587 (659)
T TIGR00954 514 -KGKLFYVPQRPY-MT-LGTLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGE 587 (659)
T ss_pred -CCcEEEECCCCC-CC-CcCHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHH
Confidence 356999999984 44 45999999986321000 0000112346678888888764 3443 37999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+ .+||++++|+.
T Consensus 588 kQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 588 KQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999998774 68999999999986 68999999973
No 338
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.9e-44 Score=284.67 Aligned_cols=223 Identities=27% Similarity=0.359 Sum_probs=184.4
Q ss_pred cceEEEEeEEEECCC-------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
++.++++|++|.|.. ....+++.|||++++|+.+|++|.||||||||.|+|+|+++|++|+|.+||+.+....
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999987742 2346899999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
. ..+.++|-++||+|+..|++ +.+-.-+..++... .........+++.+.|..+||-....+-+|+.||-|||
T Consensus 82 y----~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 82 Y----SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred h----HhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 2 23457899999999765543 34444444432221 11223344567888999999965557889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|||++||||+.+|+++|.||..++||...+.++.+++.++.+ +.+.|.|+.++..+..++|.|++|++|+++..+.+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999999975 58999999999999999999999999999987643
No 339
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=305.34 Aligned_cols=217 Identities=27% Similarity=0.394 Sum_probs=172.2
Q ss_pred eEEEEeEEEECCC-------------------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 035832 17 CLEVRDVSYRPPG-------------------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77 (245)
Q Consensus 17 ~l~~~~l~~~y~~-------------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 77 (245)
|+.++|+++.|.- ...++++|+||+|++|++++++|||||||||++|+|+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 5777788776631 123589999999999999999999999999999999999999999999
Q ss_pred EcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
++|.+..... ...-+++++|+-+-..++-...+.+.+..-.. .... ..+..+++...+.+.++++.. ++.+
T Consensus 83 V~G~~Pf~~~-----~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~--Iy~I-pd~~F~~r~~~l~eiLdl~~~-lk~~ 153 (325)
T COG4586 83 VNGKDPFRRR-----EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL--IYEI-PDDEFAERLDFLTEILDLEGF-LKWP 153 (325)
T ss_pred ecCcCcchhH-----HHHHHHHHHHhhhhheeeeechhhhhHHHHHH--HHhC-CHHHHHHHHHHHHHHhcchhh-hhhh
Confidence 9998753311 11235677775443222222233333322100 0000 133456778888999999986 7999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 158 PHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 158 ~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
++.||-|||.|+.||.||+++|++|+|||||-|||..++..+.+.|+++++ ++||+++||+++.+..+||||++|+.|
T Consensus 154 vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 999999999999999999999999999999999999999999999999964 599999999999999999999999999
Q ss_pred eEEEecc
Q 035832 236 GFLVEQR 242 (245)
Q Consensus 236 ~i~~~~~ 242 (245)
+++.++.
T Consensus 234 qlv~dg~ 240 (325)
T COG4586 234 QLVFDGT 240 (325)
T ss_pred cEeeccc
Confidence 9998753
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.3e-43 Score=318.22 Aligned_cols=215 Identities=28% Similarity=0.375 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|.++++++.-++..+++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|++||-++...+ ...+-
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd----~e~lG 409 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD----REQLG 409 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC----HHHhc
Confidence 69999999988877789999999999999999999999999999999999999999999999999875432 23456
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|||+||+-+ +++.||.|||.-.........-.+......+.+++-.+ |-+.. ...-...||||||||++||||
T Consensus 410 ~hiGYLPQdVe--LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~-iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 410 RHIGYLPQDVE--LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR-IGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred cccCcCcccce--ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCc-cCCCCCCCCchHHHHHHHHHH
Confidence 88999999974 45789999997531111100001111122345555444 33332 455667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|..+|.+++||||-|+||.+....+.+.|.+.++ +.|+|+|||.+..+ ..+|+|++|++|++-.
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQDGRIAA 551 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceeeeecCChHHh
Confidence 9999999999999999999999999999999975 69999999999865 6789999999998754
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-43 Score=286.80 Aligned_cols=146 Identities=29% Similarity=0.316 Sum_probs=132.6
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG 100 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 100 (245)
.|++++|++ +.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------------~i~ 64 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------------TPV 64 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------------EEE
Confidence 689999964 468888 4999999999999999999999999999999999999999763 278
Q ss_pred EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC
Q 035832 101 IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180 (245)
Q Consensus 101 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~ 180 (245)
|++|++. ||||||||++|||||+.+|+
T Consensus 65 ~~~q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 65 YKPQYID-----------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred EEcccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8887541 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhh-cC-ceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLK-KE-LTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~-~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
++||||||++||+.+++.+.+.|.++. ++ .|||++||+++++..+||++++|+++..+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999999985 44 89999999999999999999999987554
No 342
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=327.74 Aligned_cols=203 Identities=33% Similarity=0.448 Sum_probs=170.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|+++.|++ +++|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+
T Consensus 2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~--------------- 64 (530)
T COG0488 2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK--------------- 64 (530)
T ss_pred ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------------
Confidence 57999999999964 5799999999999999999999999999999999999999999998742
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh-HHH--------------------------HHHHHHHHHHHHcC
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ-LKE--------------------------YLALNLQRAINWVG 148 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~l~~~~ 148 (245)
..+++|++|++. .....||.+.+..+......... ... ..+.++..++.-+|
T Consensus 65 ~~~v~~l~Q~~~-~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 65 GLRVGYLSQEPP-LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred CceEEEeCCCCC-cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 136999999985 44567999988876321100000 000 11245667788888
Q ss_pred CCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 149 l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
+... ++++.+||||||.||+||+||+.+|++|||||||++||..+...+.+.|.++. + |+|+||||.+++...|++
T Consensus 144 ~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 144 FPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred CCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhh
Confidence 8763 89999999999999999999999999999999999999999999999998764 3 999999999999999999
Q ss_pred EEEEeCCeEEEe
Q 035832 229 SWRMDMGGFLVE 240 (245)
Q Consensus 229 v~~l~~G~i~~~ 240 (245)
|+.++.|++...
T Consensus 220 I~~ld~g~l~~y 231 (530)
T COG0488 220 ILELDRGKLTPY 231 (530)
T ss_pred eEEecCCceeEe
Confidence 999999988654
No 343
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=274.00 Aligned_cols=202 Identities=29% Similarity=0.455 Sum_probs=174.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 93 (245)
|+.++|++.+.+++ -.|.++||+|.+|||+.|+||||||||||+.-+.|.+.++ +|++++++++++..+.
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----- 74 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----- 74 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-----
Confidence 68999999888763 5899999999999999999999999999999999999875 8999999998865432
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++|++||++ .+|+.++|.+|+.|..+..... ...+..+..+++..||+.. .++.|.+||||||-||++-|
T Consensus 75 -~qRq~GiLFQD~-lLFphlsVg~Nl~fAlp~~~KG----~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R 147 (213)
T COG4136 75 -AQRQIGILFQDA-LLFPHLSVGQNLLFALPATLKG----NARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLR 147 (213)
T ss_pred -hhhheeeeeccc-ccccccccccceEEecCccccc----HHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHH
Confidence 257899999998 4889999999999986543222 1234457788999999986 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-h-cCceEEEEecChhHHHhhccEEEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-K-KELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~-~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+|+..|+.++||||||.||..-+.++.+++-.- . .+...|+||||...+. ...||+.|-
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~~ 208 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEMA 208 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeeee
Confidence 999999999999999999999999999988654 3 3688999999999876 667887663
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-42 Score=356.08 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=178.2
Q ss_pred eEEEEeEEEECCC-----------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccC
Q 035832 17 CLEVRDVSYRPPG-----------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNN 83 (245)
Q Consensus 17 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 83 (245)
.+..+||++..+. +.+.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999988631 124699999999999999999999999999999999999873 689999999765
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCC-----
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDP----- 158 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 158 (245)
.. ...++.+||++|++. +++..||+|++.+.............+..+.++++++.++|.+. .++.+
T Consensus 947 ~~-------~~~~~~igyv~Q~d~-~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-~~~~vg~~~~ 1017 (1470)
T PLN03140 947 KQ-------ETFARISGYCEQNDI-HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-KDAIVGLPGV 1017 (1470)
T ss_pred Ch-------HHhhhheEEEccccc-cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-hCCccCCCCC
Confidence 31 112457999999974 67789999999885211110001122334568889999999875 57775
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeC-C
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDM-G 235 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~-G 235 (245)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++||+++ ++...||++++|++ |
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999965 689999999998 47789999999996 7
Q ss_pred eEEEecc
Q 035832 236 GFLVEQR 242 (245)
Q Consensus 236 ~i~~~~~ 242 (245)
+++..+.
T Consensus 1098 ~~v~~G~ 1104 (1470)
T PLN03140 1098 QVIYSGP 1104 (1470)
T ss_pred EEEEECC
Confidence 8887654
No 345
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=281.52 Aligned_cols=220 Identities=30% Similarity=0.392 Sum_probs=176.7
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc-----cCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY-----NNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----~~~~~~ 87 (245)
++.|.+++.++++.|++. ...+||||++.|||+.+|+|+|||||||||++|++-+.|++|+|.+.-. ++..++
T Consensus 2 ~~~PLL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 2 MDKPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCCcceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 356789999999999753 5799999999999999999999999999999999999999999998653 222222
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCC-----cccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFV-----ADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL 161 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~-----~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 161 (245)
..+.....|...|||.|+|..-+. .-++-|-+. .| .+. -...+..+.+|++.+.++....|..|.++
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH------YG~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH------YGNIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh------hhhHHHHHHHHHHhcccCcccccCccccc
Confidence 222222334568999999853221 112233222 12 111 11345567889999999876678999999
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.. +.+++++|||+..+.-++||..+|++|+++.
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999999999999999999999999999999999999999999964 5799999999999998999999999999987
Q ss_pred ec
Q 035832 240 EQ 241 (245)
Q Consensus 240 ~~ 241 (245)
.+
T Consensus 233 ~G 234 (258)
T COG4107 233 SG 234 (258)
T ss_pred cc
Confidence 54
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.5e-43 Score=331.96 Aligned_cols=207 Identities=26% Similarity=0.306 Sum_probs=165.9
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE------
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN------ 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~------ 77 (245)
.|+-..|++-| ++++|+++ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 60 ~cp~~a~~i~~~p~~~~~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~ 137 (590)
T PRK13409 60 KCPFDAISIVNLPEELEEEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWD 137 (590)
T ss_pred cCCcceEEEeeCchhhccCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHH
Confidence 45555566644 67899742 35899999 8999999999999999999999999999999999997
Q ss_pred -----EcCccCCCCCCCCCCCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q 035832 78 -----IRGYNNDGEPNNSPEPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150 (245)
Q Consensus 78 -----~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (245)
++|.++....... .....++++.+|.... .+...||.|++... ....++.++++.+++.
T Consensus 138 ~~~~~~~G~~l~~~~~~~--~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~ 203 (590)
T PRK13409 138 EVLKRFRGTELQNYFKKL--YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLE 203 (590)
T ss_pred HHHHHhCChHHHHHHHHH--hccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCc
Confidence 8888764211000 0012345666665321 11234888888631 1223577889999998
Q ss_pred CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 151 ~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
+. +++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++.++.|||++|||++++..+||+++
T Consensus 204 ~~-~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 204 NI-LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred hh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 75 79999999999999999999999999999999999999999999999999998667899999999999999999999
Q ss_pred EEeCC
Q 035832 231 RMDMG 235 (245)
Q Consensus 231 ~l~~G 235 (245)
+|.++
T Consensus 283 vl~~~ 287 (590)
T PRK13409 283 IAYGE 287 (590)
T ss_pred EEeCC
Confidence 99863
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=276.25 Aligned_cols=155 Identities=39% Similarity=0.572 Sum_probs=139.2
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|+++.|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++..... ..+++.+
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~----~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL----EELRRRI 75 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH----HHHHhce
Confidence 6899999964 369999999999999999999999999999999999999999999999987643211 1124568
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+|| ||+||+||++||||++.+|
T Consensus 76 ~~~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 76 GYVPQ--------------------------------------------------------LSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEee--------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 88887 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
++++|||||++||+.++..+.+.+.++.+ +.|+|++||+++++..+||++++|++|+
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999865 4899999999999999999999999875
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.6e-42 Score=280.60 Aligned_cols=157 Identities=27% Similarity=0.362 Sum_probs=133.0
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+++|+|+||+|++|++++|+||||||||||||++. +++|++.++|..- . ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~--------~~~~~~~~~~q------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K--------FSRNKLIFIDQ------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c--------cccccEEEEhH------
Confidence 467999999999999999999999999999999985 3699999976421 0 11234667665
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV--PDLLILDEPL 188 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~--p~llllDEPt 188 (245)
.++++.+++....+++++.+||||||||++|||||+.+ |+++||||||
T Consensus 68 ------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 ------------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred ------------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 13467778865336889999999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 189 AGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 189 s~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
++||+.+++.+.+.|+++.+ +.|||++||+++++ ..||++++|++|+.
T Consensus 118 ~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999999999999999864 68999999999987 57999999977544
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-41 Score=350.31 Aligned_cols=198 Identities=23% Similarity=0.379 Sum_probs=162.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|+++.|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------------
Confidence 6999999999975445799999999999999999999999999999999999999999999864
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHH--HH---HHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL--NL---QRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~---~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+|+|++|+|. ++..|++||+.++... . ..+..+ .+ .+.++.+ |.+. ..++.+.+||||||||+
T Consensus 700 -~i~yv~Q~~~--l~~~Ti~eNI~~g~~~---~---~~~~~~~~~~~~l~~~l~~~~~g~~t-~ig~~g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAW--IQNDSLRENILFGKAL---N---EKYYQQVLEACALLPDLEILPSGDRT-EIGEKGVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCcc--ccCCcHHHHhhcCCcc---C---HHHHHHHHHHhCCHHHHHhcCCCCCc-eecCCCCCCCHHHHHHH
Confidence 4999999984 3468999999997321 1 111111 11 1122222 2222 24677899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh---hcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL---KKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l---~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|+++..+
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeC
Confidence 9999999999999999999999999999999998653 356899999999998764 9999999999998654
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-41 Score=283.35 Aligned_cols=191 Identities=27% Similarity=0.377 Sum_probs=163.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+ |++++.-..-+-+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-----------------v~~li~lg~Gf~p 102 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-----------------VAPLIELGAGFDP 102 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-----------------EehhhhcccCCCc
Confidence 56999999999999999999999999999999999999999999999764 2222222222334
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
.+|.+||+.+-.... + ..+++.++.++++++.-+|.++ .++|+.++|.||+-|+++|.|...+|++||+||-.+.-
T Consensus 103 elTGreNi~l~~~~~-G--~~~~ei~~~~~eIieFaELG~f-i~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 103 ELTGRENIYLRGLIL-G--LTRKEIDEKVDEIIEFAELGDF-IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred ccchHHHHHHHHHHh-C--ccHHHHHHHHHHHHHHHHHHHH-hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 679999998741111 1 1245667788888988899886 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 192 DWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+.-+++-.+.+.++. ++.|||+||||++.+.++|||+++|++|++...+++
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH
Confidence 9999999999999994 569999999999999999999999999999887653
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.7e-42 Score=333.48 Aligned_cols=220 Identities=23% Similarity=0.212 Sum_probs=164.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEEcCccCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS---KPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~ 90 (245)
...+|+++|++++|++ +++|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++.+.......
T Consensus 174 ~~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 174 AIKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA 251 (718)
T ss_pred CceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence 3457999999999964 46999999999999999999999999999999999964 578999987666542211000
Q ss_pred ----------CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh---------------HHHHHHHHHHHHHH
Q 035832 91 ----------PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ---------------LKEYLALNLQRAIN 145 (245)
Q Consensus 91 ----------~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~~~l~ 145 (245)
....+++.++|++|++...+. ++.++............. .......++.++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFE--TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc--ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 000112346778876532211 222221111000000000 00022345778889
Q ss_pred HcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhh
Q 035832 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAAL 225 (245)
Q Consensus 146 ~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~ 225 (245)
.+|+.+...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~ 407 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTV 407 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 9999643468899999999999999999999999999999999999999999999999887 57999999999999999
Q ss_pred ccEEEEEeCCeEEE
Q 035832 226 VDHSWRMDMGGFLV 239 (245)
Q Consensus 226 ~d~v~~l~~G~i~~ 239 (245)
||++++|++|++..
T Consensus 408 ~d~i~~l~~g~i~~ 421 (718)
T PLN03073 408 VTDILHLHGQKLVT 421 (718)
T ss_pred CCEEEEEECCEEEE
Confidence 99999999999974
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-41 Score=350.21 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=159.6
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|++. .+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.. .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----------------~ 677 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----------------I 677 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----------------e
Confidence 59999999999742 357999999999999999999999999999999999999999987632 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----------ccCCCCCCCCChHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----------TSLDKDPHSLSGGY 165 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq 165 (245)
++.|+||+|+|. +++.|++||+.|+.+. . . +++.++++.+++.+ ........+|||||
T Consensus 678 ~~~Iayv~Q~p~--Lf~gTIreNI~fg~~~---~---~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 678 RGSVAYVPQVSW--IFNATVRENILFGSDF---E---S----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred cCcEEEEcCccc--cccccHHHHhhcCCcc---C---H----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 467999999984 4578999999998321 1 1 12233333333321 12345667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++||||++.+|+++|||||||+||+++.+.+++. +....+++|+|++||+++.+ ..||+|++|++|+++..+
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999988765 55555679999999999875 579999999999998754
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-41 Score=349.24 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=160.7
Q ss_pred ceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~ 93 (245)
..|+++|++|+|+.. .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------------- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--------------- 677 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------------
Confidence 359999999999642 3568999999999999999999999999999999999999999 89975
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCC
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLS 162 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 162 (245)
+.+|+||+|+|. +++.|++||+.|+.+. . ++++.++++.+++ +. .......+||
T Consensus 678 --~~~Iayv~Q~p~--LfngTIreNI~fg~~~---d-------~e~y~~vl~a~~L~~di~~LP~Gd~T-~IGe~G~~LS 742 (1622)
T PLN03130 678 --RGTVAYVPQVSW--IFNATVRDNILFGSPF---D-------PERYERAIDVTALQHDLDLLPGGDLT-EIGERGVNIS 742 (1622)
T ss_pred --cCeEEEEcCccc--cCCCCHHHHHhCCCcc---c-------HHHHHHHHHHhCcHHHHHhCCCcccc-cccCCCCCCC
Confidence 356999999984 4578999999998431 1 1123333333333 22 2355677899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||++||||++.+|+++|||||||+||+++.+.+++ .+....+++|+|++||+++.+ ..||+|++|++|+++..+
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999988764 566555679999999999875 579999999999998654
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.6e-41 Score=346.07 Aligned_cols=204 Identities=20% Similarity=0.177 Sum_probs=166.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS----KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.... ...++.++|++|++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-----~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-----KHYRGDVVYNAETDV 148 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-----hhcCceeEEeccccc
Confidence 46999999999999999999999999999999999996 578999999998764321 123567999999974
Q ss_pred CCCCcccHHHHHHhcCCCCC-C---chhHHHHHH-HHHHHHHHHcCCCCccCCCC-----CCCCChHHHHHHHHHHHHhh
Q 035832 108 RYFVADNVLDEVIFGWPRQS-G---SIQLKEYLA-LNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~iAral~~ 177 (245)
+++.+||+|++.|+..... . ....+++.. ...+++++.+||.+. .+++ +..|||||||||+||+||+.
T Consensus 149 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 149 -HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-RNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred -cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-cCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 6788999999998632110 0 000112222 224568999999875 4544 57899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecCh-hHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDL-KEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++++|||||+|||+.++..+++.|+++++ +.|||+++|++ +++.+++|++++|++|+++..+.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 9999999999999999999999999999964 68999999996 68889999999999999987653
No 355
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-42 Score=308.41 Aligned_cols=215 Identities=24% Similarity=0.344 Sum_probs=174.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||+|.|.. .+++|+||||++.+|+.+||+||||+||||++|++..+...++|+|.+||+|+..... ...|
T Consensus 537 ~i~fsnvtF~Y~p-~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~----~SLR 611 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP-GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ----SSLR 611 (790)
T ss_pred eEEEEEeEEecCC-CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH----HHHH
Confidence 4999999999976 4789999999999999999999999999999999999999999999999999854221 2247
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.||.||||.. +++.|+..|+.++.+......-.....+..+.+.+ +++++- ....+.-.|||||||||+|||
T Consensus 612 s~IGVVPQDtv--LFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 612 SSIGVVPQDTV--LFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HhcCcccCcce--eecceeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 88999999973 45789999999985543321111111111222222 233322 134456679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++..|.+++|||.||+||..+.+++...|.++..+.|-|++.|.+..+- .+|.++++++|+|++.+
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv-nAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV-NADLILVISNGRIVERG 754 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee-cccEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999998889999999999875 58999999999998754
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-40 Score=340.59 Aligned_cols=187 Identities=25% Similarity=0.396 Sum_probs=151.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +|+|++|+|. .+ +
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------------~iayv~Q~~~-l~-~ 500 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------------RISFSPQTSW-IM-P 500 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------------EEEEEeCCCc-cC-C
Confidence 589999999999999999999999999999999999999999999864 3899999985 44 4
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
.|++||+.|+.... ........ ...+.+.++.+... ......++.+|||||||||+||||++.+|+++||||||++
T Consensus 501 ~Ti~eNI~~g~~~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 501 GTIKDNIIFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred ccHHHHHHhccccc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 69999999974211 11111111 11223334443221 1124667889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 191 LDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 191 LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+++.+++. +..+.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 579 LD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK-KADKILLLHEGVCYFYG 629 (1490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEc
Confidence 999999999985 666666799999999999875 59999999999998654
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-41 Score=269.80 Aligned_cols=192 Identities=28% Similarity=0.321 Sum_probs=159.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++++.+|++...+. ..+|.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|..+..... ..
T Consensus 1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-----~~ 73 (209)
T COG4133 1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-----SY 73 (209)
T ss_pred CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-----hH
Confidence 35788999988754 579999999999999999999999999999999999999999999999887754321 11
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.+.+-|+--++. .-..+|++||+.|.... ... .....+.++++.+||... .|.++++||-|||+||+|||-+
T Consensus 74 ~~~l~yLGH~~g-iK~eLTa~ENL~F~~~~-~~~-----~~~~~i~~Al~~vgL~g~-~dlp~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 74 HQALLYLGHQPG-IKTELTALENLHFWQRF-HGS-----GNAATIWEALAQVGLAGL-EDLPVGQLSAGQQRRVALARLW 145 (209)
T ss_pred HHHHHHhhcccc-ccchhhHHHHHHHHHHH-hCC-----CchhhHHHHHHHcCcccc-cccchhhcchhHHHHHHHHHHH
Confidence 245666666554 45678999999985211 111 123457889999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEM 222 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~ 222 (245)
+..++++||||||++||..+...+-.++..-. ++..||.+||..--+
T Consensus 146 ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999999999999999998765 468999999987544
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.7e-40 Score=338.39 Aligned_cols=202 Identities=27% Similarity=0.312 Sum_probs=166.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~i~yv~Q~d~- 249 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-------PRKTSAYISQNDV- 249 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-------ccceeEEeccccc-
Confidence 46999999999999999999999999999999999999998 999999998764321 1467999999974
Q ss_pred CCCcccHHHHHHhcCCCC-CCc--------hhHHH--------H--------------HHHHHHHHHHHcCCCCcc----
Q 035832 109 YFVADNVLDEVIFGWPRQ-SGS--------IQLKE--------Y--------------LALNLQRAINWVGLDGTS---- 153 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~-~~~--------~~~~~--------~--------------~~~~~~~~l~~~~l~~~~---- 153 (245)
+++.+||+|++.|+.... ... ....+ + ....++++++.+||++..
T Consensus 250 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~v 329 (1470)
T PLN03140 250 HVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIV 329 (1470)
T ss_pred CCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCcee
Confidence 678899999999852111 000 00000 0 011246789999997631
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecCh-hHHHhhccEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDL-KEMAALVDHSW 230 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~-~~~~~~~d~v~ 230 (245)
.++.+..|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.+ +.|+|+++|++ +++..++|+|+
T Consensus 330 g~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi 409 (1470)
T PLN03140 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII 409 (1470)
T ss_pred CCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE
Confidence 2567789999999999999999999999999999999999999999999999963 58999999986 57889999999
Q ss_pred EEeCCeEEEec
Q 035832 231 RMDMGGFLVEQ 241 (245)
Q Consensus 231 ~l~~G~i~~~~ 241 (245)
+|++|+++..+
T Consensus 410 lL~~G~ivy~G 420 (1470)
T PLN03140 410 LLSEGQIVYQG 420 (1470)
T ss_pred EeeCceEEEeC
Confidence 99999998765
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=326.55 Aligned_cols=218 Identities=29% Similarity=0.414 Sum_probs=188.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...+.++|+++.|+.... +++++||.|++||+.|+.|||||||||++++|+|..+|++|+++++|.++..... ...
T Consensus 562 ~~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~---~~~ 637 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD---FQQ 637 (885)
T ss_pred cceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc---hhh
Confidence 356999999999976433 8999999999999999999999999999999999999999999999988754221 112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.+||+||.. .++..+|.+|.+.+.... .+. ......+.++.+++.++|.+. ++++++.+|||+|+|+++|.|
T Consensus 638 ~~~~iGyCPQ~d-~l~~~lT~rEhL~~~arl-rG~--~~~di~~~v~~ll~~~~L~~~-~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 638 VRKQLGYCPQFD-ALWEELTGREHLEFYARL-RGL--PRSDIGSAIEKLLRLVGLGPY-ANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhcccCCchh-hhhhhccHHHHHHHHHHH-cCC--ChhHHHHHHHHHHHHcCChhh-hccchhhCCCcchhhHHHHHH
Confidence 367899999996 478889999999875211 111 123445568899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++.+|++++|||||+|+||.+++.+|+++.+++++ ++||++||.+++++.+|||+.+|.+|++..-+
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 99999999999999999999999999999999865 59999999999999999999999999997644
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=302.13 Aligned_cols=198 Identities=31% Similarity=0.415 Sum_probs=172.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.++++++|+++.|+++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-
T Consensus 317 ~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~------------ 383 (530)
T COG0488 317 LGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE------------ 383 (530)
T ss_pred CCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC------------
Confidence 456689999999999754 6799999999999999999999999999999999999999999998841
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.-++||..|+...+....|+.|++.-..+.. .+..+...|..|++......+++..||||||.|+.||
T Consensus 384 ---~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~---------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 384 ---TVKIGYFDQHRDELDPDKTVLEELSEGFPDG---------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred ---ceEEEEEEehhhhcCccCcHHHHHHhhCccc---------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 2469999999855556678999987642211 1345778899999987667899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
+.++.+|.+|||||||+.||..+++.+.+.|.++. .|||+||||..++.++|+++|.+++ ++.
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~ 514 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVE 514 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-cee
Confidence 99999999999999999999999999999998874 6999999999999999999999997 443
No 361
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-39 Score=335.28 Aligned_cols=187 Identities=24% Similarity=0.315 Sum_probs=152.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ++|||+||+|. + +
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------~~i~yv~Q~~~-l-~ 733 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------RSIAYVPQQAW-I-M 733 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------CeEEEEeCCCc-c-C
Confidence 468999999999999999999999999999999999999999999762 35999999985 4 4
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPt 188 (245)
..|++||+.++... ......... ...+.+.++.+ |+... .++++.+|||||||||+|||||+.+|+++||||||
T Consensus 734 ~~Tv~enI~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~-i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 734 NATVRGNILFFDEE--DAARLADAVRVSQLEADLAQLGGGLETE-IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred CCcHHHHHHcCChh--hHHHHHHHHHHhhhHHHHHHhhccchHH-hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 67999999986321 000011111 12344456666 66654 58889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 189 AGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 189 s~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++||+.+.+.+++.+ ....+++|+|++||+++.+ ..||++++|++|+++..+
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSG 863 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEec
Confidence 999999999888744 3333578999999999987 579999999999997654
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=8.4e-39 Score=271.01 Aligned_cols=199 Identities=23% Similarity=0.243 Sum_probs=137.4
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCcceEEEcC-------ccCCCCCCCCCCCCCCCcEEEE
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL-QLLAGLSKPTSGSINIRG-------YNNDGEPNNSPEPLPPEKVGIV 102 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g-------~~~~~~~~~~~~~~~~~~i~~v 102 (245)
...+|+++||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+................++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999995 4443 234432210 0000000000001112235566
Q ss_pred ecCCCCCC-CcccHH---HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 103 FQFPERYF-VADNVL---DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 103 ~Q~~~~~~-~~~tv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
+|++.... +..++. +...+. .... .......+ .++++.+++.+...++++.+|||||||||+|||||+.+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYL-RLLF----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHH-HHHh----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 66553222 222432 222111 0000 01111222 46789999976336999999999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEec
Q 035832 179 P--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 179 p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
| ++|||||||++||+.++..+.++|+++++ +.|||++|||++++ .+||++++| ++|+|+.++
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999999864 68999999999987 599999999 999998753
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-40 Score=262.67 Aligned_cols=215 Identities=26% Similarity=0.313 Sum_probs=172.6
Q ss_pred ceEEEEeEEEECC-----CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC----CCC
Q 035832 16 SCLEVRDVSYRPP-----GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN----DGE 86 (245)
Q Consensus 16 ~~l~~~~l~~~y~-----~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~ 86 (245)
..|.++|++|+|- +-..++++++||+++.||+++|=||||||||||||+|.|-+.|++|+|++....- ...
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 3589999998873 2245799999999999999999999999999999999999999999999865421 111
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.....-..+++.||||.|.-. ..+..+..|.++-+.... .. ..+..+.++..++.++++.+..+.-.|.++|||||
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLR-viPRV~aLdVvaePll~~--gv-~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLR-VIPRVSALDVVAEPLLAR--GV-PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHH-hccCcchHHHHHhHHHHc--CC-CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 111112234667999999853 455556666555432111 11 13344567889999999998778999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||.|||.++.+-++|+|||||++||..+++.+.++|.+.+. +.++|=|-||-+.=+..|||++-+..
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999874 68999999998887889999988753
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=291.38 Aligned_cols=215 Identities=28% Similarity=0.391 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.+++++|.|.. .+++|+++||++++|+.++++||+|+||||++++|..++++++|.|.++|+++.... ....|+
T Consensus 263 v~F~~V~F~y~~-~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt----q~slR~ 337 (497)
T COG5265 263 VAFINVSFAYDP-RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT----QQSLRR 337 (497)
T ss_pred EEEEEEEeeccc-cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH----HHHHHH
Confidence 789999999976 478999999999999999999999999999999999999999999999999985422 123467
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
-||+|||+.. ++..|++.|+.++.+...............+...++.+ |.+.. ...+.-.|||||||||+|||++
T Consensus 338 aIg~VPQDtv--LFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~-VgerglklSggekqrvaiar~i 414 (497)
T COG5265 338 AIGIVPQDTV--LFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG-VGERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred HhCcCcccce--ehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc-cchheeeccCchHHHHHHHHHH
Confidence 8999999973 45789999999985543221111111122233444443 33322 3445557999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|+|||.||+||..+.+++...|++...+.|-+++.|.+..+. -+|.+++|++|+|++.+
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~-~adeiivl~~g~i~erg 479 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII-DADEIIVLDNGRIVERG 479 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhcc-CCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999998899999999999876 48999999999998765
No 365
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-39 Score=306.85 Aligned_cols=217 Identities=30% Similarity=0.354 Sum_probs=183.0
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 90 (245)
.+.++|++....+. .+.+|++||.++++||+.||+|||||||||||++|+|-... .+|+|.+||+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~----- 99 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS----- 99 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----
Confidence 47888988877543 36799999999999999999999999999999999999975 69999999965322
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-----CCChHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-----SLSGGY 165 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq 165 (245)
+..++..|||.|+. .+++.+||+|.+.+.............+.+++++++++.+||.+. .|..++ .+||||
T Consensus 100 --~~~~~~s~yV~QdD-~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 100 --RSFRKISGYVQQDD-VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-ADTLIGNPGIRGLSGGE 175 (613)
T ss_pred --hhhhheeEEEcccc-cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-ccceecCCCCCccccch
Confidence 12467899999996 478899999999986322111111234566789999999999865 677776 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+||.-++++|.+|++||||+|||..+..++++.|+++++ ++|||++-|.+. .+.+..|++++|.+|+++..+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9999999999999999999999999999999999999999975 699999999975 4677899999999999998764
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-37 Score=309.03 Aligned_cols=217 Identities=24% Similarity=0.293 Sum_probs=175.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++.+|..+...+|+||||+|++||.+||+|+.|||||||+.+|-++..|.+|+|.+||.|+..... ..+|
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL----~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL----HDLR 1213 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH----HHHH
Confidence 499999999997665679999999999999999999999999999999999999999999999999976543 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++++||+|. ++..|++.|+.=. .......-.+...+..+.+.++.+ ||+.. ...-..++|-||||.++||||
T Consensus 1214 srlsIIPQdPv--LFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~-v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1214 SRLSIIPQDPV--LFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSE-VSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred hcCeeeCCCCc--eecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCce-ecCCCccCChHHHHHHHHHHH
Confidence 89999999994 4578999999621 110000000111112233333332 34332 344557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++++||+|||+|+++|+++-..+.+.|++--+++|||.|.|+++.+.. ||||+||++|++++-+.
T Consensus 1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred HhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCC
Confidence 99999999999999999999999999999998788999999999999986 79999999999976543
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=1.4e-37 Score=258.28 Aligned_cols=165 Identities=23% Similarity=0.321 Sum_probs=132.8
Q ss_pred e-eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---------ceEEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 35 L-NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---------GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 35 l-~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---------G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
+ ++++|++++| +++|+||||||||||+++|+|+.+|.. |++.+.|++... ...+++|+|+||
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~vfq 83 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-------PANFAEVTLTFD 83 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-------CCceEEEEEEEE
Confidence 5 7889999999 999999999999999999999987653 457666655421 112468999999
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh----hCCC
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV----QVPD 180 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~----~~p~ 180 (245)
++..+ ++.. . ..++.++++. .+. .++++.+||||||||++||++++ .+|+
T Consensus 84 ~~~~~-----------~~~~-----~------~~~~~~~l~~---~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~ 137 (197)
T cd03278 84 NSDGR-----------YSII-----S------QGDVSEIIEA---PGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSP 137 (197)
T ss_pred cCCCc-----------eeEE-----e------hhhHHHHHhC---CCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCC
Confidence 98633 1100 0 1234555655 343 58899999999999999999997 4669
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||||||++||+..+..+.+.|+++.++.|||++||+++.+ .+||+++.|..
T Consensus 138 illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999999999999987678999999999976 68999999874
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-36 Score=301.09 Aligned_cols=200 Identities=24% Similarity=0.383 Sum_probs=165.6
Q ss_pred CCcceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+...++++|.+++.++ +..+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+|+|.++|
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g----------- 582 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG----------- 582 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-----------
Confidence 34557999999999864 234589999999999999999999999999999999999999999999864
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCC
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSL 161 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 161 (245)
.++|++|.|. +.+.||+|||.||.+. .+++.++.++.+.|+.. ....+.-+|
T Consensus 583 ------siaYv~Q~pW--I~ngTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinL 644 (1381)
T KOG0054|consen 583 ------SVAYVPQQPW--IQNGTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINL 644 (1381)
T ss_pred ------eEEEeccccH--hhCCcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCC
Confidence 3899999994 4578999999998432 12234444555544321 235677899
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||++||||+.++++++|||.|+|++|.+..+.+++..-. +-+++|+|++||.++.+ ..||.|++|++|+|...
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L-~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL-PHADQIIVLKDGKIVES 723 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh-hhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999999998876553 34679999999998865 57999999999999876
Q ss_pred cc
Q 035832 241 QR 242 (245)
Q Consensus 241 ~~ 242 (245)
++
T Consensus 724 Gt 725 (1381)
T KOG0054|consen 724 GT 725 (1381)
T ss_pred cC
Confidence 53
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=3.4e-37 Score=240.79 Aligned_cols=134 Identities=37% Similarity=0.510 Sum_probs=111.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.... ....++.++|++|++. ++...|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~----~~~~~~~i~~~~~~~~-~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID----IEELRRRIGYVPQDPQ-LFPGLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH----HHHHHHTEEEEESSHC-HHTTSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc----cccccccccccccccc-cccccc
Confidence 78999999999999999999999999999999999999999999999886411 1123568999999963 667778
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
+.+| ....++.++++.+++.+. ..++++.+||+|||||++|||||+.+|+++|||||||
T Consensus 76 v~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VREN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9888 112246667777776542 2344559999999999999999999999999999997
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.3e-35 Score=255.60 Aligned_cols=198 Identities=23% Similarity=0.282 Sum_probs=145.8
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh--------CC--CCCCcc-----------eEEEcCccCCCCCCCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA--------GL--SKPTSG-----------SINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~--------Gl--~~p~~G-----------~i~~~g~~~~~~~~~~~~ 92 (245)
.|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|..+ -|.++..++...++....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998652 11 012111 356666666443322110
Q ss_pred CC-------------------CC---CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q 035832 93 PL-------------------PP---EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150 (245)
Q Consensus 93 ~~-------------------~~---~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (245)
.+ +. ..+.|..++.. .+..+|+.|++.|.... . ...+..++++.+||.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~-~v~~ltv~e~~~~~~~~-------~--~~~~~~~~L~~vgL~ 159 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIA-DVLDMTVEEALEFFENI-------P--KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHH-HHhcCCHHHHHHHHHhh-------h--hHHHHHHHHHHcCCc
Confidence 00 00 01333333332 23456777777663110 1 123466789999998
Q ss_pred CccCCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 151 GTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 151 ~~~~~~~~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
...+++++.+|||||+||++|||+|+.+ |+++||||||+|||+..++.+++.|+++.+ +.|||++||+++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 6336999999999999999999999996 799999999999999999999999999874 689999999999885 79
Q ss_pred cEEEEE------eCCeEEEecc
Q 035832 227 DHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 227 d~v~~l------~~G~i~~~~~ 242 (245)
|+++.| ++|+++.++.
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCC
Confidence 999999 7899987654
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=272.35 Aligned_cols=220 Identities=26% Similarity=0.328 Sum_probs=184.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.+.++++|++..- .++|+||++++|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+++...+ +.
T Consensus 259 ~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s---p~ 329 (500)
T COG1129 259 IGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS---PR 329 (500)
T ss_pred CCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC---HH
Confidence 356789999997532 389999999999999999999999999999999999999999999999875432 22
Q ss_pred CCCCCcEEEEecCCC--CCCCcccHHHHHHhc-CCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 93 PLPPEKVGIVFQFPE--RYFVADNVLDEVIFG-WPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
...+..|+|||.+-. -++..+++.+|+.+. +...... .......+..++++.+.+++.....+.++.+||||.|||
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 234567999999852 256788999999876 2111111 112333455678889999987655688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|.|||.|+.+|++|||||||.|+|.-++.+++++|+++++ +++||++|-+++++..+||||++|++|+++.+-
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999975 699999999999999999999999999998753
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.7e-35 Score=253.16 Aligned_cols=185 Identities=22% Similarity=0.249 Sum_probs=139.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCc-cCCCCCCCCCCCCCCCcEEEEecCCCC--------CCCccc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGY-NNDGEPNNSPEPLPPEKVGIVFQFPER--------YFVADN 114 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~-~~~~~~~~~~~~~~~~~i~~v~Q~~~~--------~~~~~t 114 (245)
..+++|+||||||||||+++|++++.+. .|++++.+. ++-... ........+|+++||++.. ..+..|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~--~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKR--GQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcC--CCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 5699999999999999999999999886 468888776 432111 1111234589999999631 234578
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-------------------ccCCCCCCCCChHHHHHHHHHHHH
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-------------------TSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqrv~iAral 175 (245)
|.+++..+..... ..........++.++++.+++.. ...++++.+||+|||||++|||||
T Consensus 103 V~r~I~~~~~~~~-~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKY-LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEE-EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 8877765421110 00001122356788899999861 124678999999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 176 V----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+ .+|+++|+||||++||+..++.+++.|+++.++.++|++||+.+ +...||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~-~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEG-MFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHhCCEEEEEE
Confidence 8 57899999999999999999999999999877789999999954 566899998775
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=1.5e-34 Score=242.90 Aligned_cols=194 Identities=19% Similarity=0.174 Sum_probs=139.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEc-CCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLP-EKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++.+ -+..+....+. ...... ...
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~~~~----~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRSVFA----PGE 73 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHHHhc----CCC
Confidence 58889988 66431 66777654 58999999999999999999999643 34444444321 000000 112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
....|+++||++...+ ++..+. +. . .......+ .+...++.+. +++++.+||+||+||++||||
T Consensus 74 ~~~~v~~~f~~~~~~~---~~~r~~--gl-----~---~~~~~~~~--~l~~g~l~~~-l~~~~~~lS~G~~~r~~la~a 137 (213)
T cd03279 74 DTAEVSFTFQLGGKKY---RVERSR--GL-----D---YDQFTRIV--LLPQGEFDRF-LARPVSTLSGGETFLASLSLA 137 (213)
T ss_pred ccEEEEEEEEECCeEE---EEEEec--CC-----C---HHHHHHhh--hhhhcchHHH-hcCCccccCHHHHHHHHHHHH
Confidence 2467999999975322 111110 10 0 11111111 2344455554 688999999999999999999
Q ss_pred Hhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 175 LVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 175 l~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|+. +|+++||||||++||+.+++.+.+.|.++++ +.|||++||+++++..+||+++++++|..
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 985 5789999999999999999999999999875 68999999999999999999999999864
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-36 Score=238.12 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=172.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++|+...- + |-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.++...+.. ..
T Consensus 2 ~l~qln~v~~~t----R--L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~----eL 70 (248)
T COG4138 2 ILMQLNDVAEST----R--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT----EL 70 (248)
T ss_pred ceeeeccccccc----c--ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHh----HH
Confidence 468899987643 2 78899999999999999999999999999999998 5699999999987543221 23
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.++-+|+.|+.. ..+.+-|+..+.+.-+ .+.....+.++...+++++. +.+..++|||||.|||-+|..+
T Consensus 71 ArhRAYLsQqq~-p~f~mpV~~YL~L~qP--------~~~~a~~i~~i~~~L~l~DK-L~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 71 ARHRAYLSQQQT-PPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHhhccC-CcchhhhhhhhhhcCc--------hHHHHHHHHHHHhhhcccch-hhhhhhhcCcccceeeEEeEEE
Confidence 456689988864 3456788888877522 23344567788888999986 7999999999999999999887
Q ss_pred hh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQ-----VP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~-----~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+. || ++||+|||.++||...+-.+..+|.+++. +.+|||++||++...+.+|++|.++.|++++.+.
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 53 44 79999999999999999999999999875 6999999999999999999999999999988653
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=9.8e-35 Score=248.09 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=131.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh----------------CCCCCCcc-------
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA----------------GLSKPTSG------- 74 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------Gl~~p~~G------- 74 (245)
|+++|. ++|++ ..++.+++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 556665 35653 35778876 8899999999999999999998 44555555
Q ss_pred -eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHcCCCC
Q 035832 75 -SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWVGLDG 151 (245)
Q Consensus 75 -~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~ 151 (245)
+|.+++.+-.. +........++.+++++|++. ++. ..|..+...+............. ... .+..+.+++..
T Consensus 76 v~i~~~~~~~~~-~~~~~~~~i~r~ig~~~~~~~-l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~ 150 (243)
T cd03272 76 VEIIFDNSDNRF-PIDKEEVRLRRTIGLKKDEYF-LDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQ 150 (243)
T ss_pred EEEEEEcCCCcc-CCCCCEEEEEEEEECCCCEEE-ECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhccc
Confidence 55554422100 000001112355788877653 222 23444433221000000000000 000 11223344544
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc
Q 035832 152 TSLDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 152 ~~~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d 227 (245)
. .++++.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++.++.+||++||+.+ +..+||
T Consensus 151 ~-~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 151 D-EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred c-ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCC
Confidence 3 578899999999999999999974 5899999999999999999999999999876778888888865 678999
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999986
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=3e-34 Score=260.69 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=166.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.|.+.++|++|.|.++. .++++++|-|+.++.+++|||||||||||||+++|.+.|+.|.|.-.-.
T Consensus 385 ~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H----------- 452 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH----------- 452 (614)
T ss_pred CCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------
Confidence 3577899999999997643 6899999999999999999999999999999999999999998864311
Q ss_pred CCCCCcEEEEecCCCCC-CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERY-FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.++++.-|+.... ....++.+++.-.++. ....+.+..++.++||.......++.+||+|||.||.+
T Consensus 453 ----~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~--------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 ----NKLPRYNQHLAEQLDLDKSSLEFMMPKFPD--------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred ----ccchhhhhhhHhhcCcchhHHHHHHHhccc--------cchHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 2344555543222 2245777777644321 11234577889999999655688999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.++..|.+|||||||++||.++...+.+.|.++. .+||++|||...+..+++++++.++|.+...
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999999999887764 5799999999999999999999999988754
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=4.9e-35 Score=245.66 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=136.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|.. .|++ ..++++++| ++++|+||||||||||+++|. +++|.+... .+.
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~--------~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK--------MRQ 58 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH--------hhh
Confidence 37788876 7754 468999988 899999999999999999997 233433211 112
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC------CchhHHHHHHH--HHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS------GSIQLKEYLAL--NLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
+++++++|+.. .++.+++.+...+...... .... ...... ...++++.+++.+. .++++..||+|||||
T Consensus 59 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~v~~~~~~~~~~L~~~-~~~~~~~lS~G~~~r 135 (212)
T cd03274 59 KKLSDLIHNSA-GHPNLDSCSVEVHFQEIIDKPLLKSKGID-LDHNRFLILQGEVEQIAQMPKK-SWKNISNLSGGEKTL 135 (212)
T ss_pred hhHHHHhcCCC-CCCCCceEEEEEEEEeCCCHHHHHHCCcC-CCCCceEEcCCcEEEeeccccc-cccchhhcCHHHHHH
Confidence 46888888763 4555666665544211000 0000 000000 01345566788764 688899999999999
Q ss_pred HHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 169 LALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 169 v~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||||++. +|++++|||||+|||+.++..+++.|++++++.|+|++||+. ++.++||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 999999974 479999999999999999999999999997778999999995 56789999999963
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=100.00 E-value=6.6e-33 Score=231.49 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=128.1
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHh----CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCC-CCC---
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLA----GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP-ERY--- 109 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~-~~~--- 109 (245)
.++++.+| +++|+||||||||||+++|. |..+|.+|.+..+...+.. ...+..|+++||++ ...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~-------~~~~~~v~~~f~~~~~~~~~v 87 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-------GEVRAQVKLAFENANGKKYTI 87 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC-------CCCcEEEEEEEEeCCCCEEEE
Confidence 34566677 99999999999999999994 9999988877622222211 11246799999997 221
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH------HHHHHHHhhCCCEEE
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR------LALAIQLVQVPDLLI 183 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~iAral~~~p~lll 183 (245)
...+++++|+.+.. .. .+.+. +++++.+||+||+|| ++||||++.+|+++|
T Consensus 88 ~r~~~~~~~~~~~~---------~~----~~~~~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 88 TRSLAILENVIFCH---------QG----ESNWP----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred EEEhhHhhceeeec---------hH----HHHHH----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 22348888886531 01 11111 266789999999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 184 LDEPLAGLDWKARA-DVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 184 lDEPts~LD~~~~~-~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
+||||++||+..++ .+.++|.++++ +.|||++||+++.+ ..||+++.|++.
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~~ 198 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVEKD 198 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEeeC
Confidence 99999999999999 99999999865 57999999999876 579999999753
No 379
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.6e-33 Score=229.27 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=176.9
Q ss_pred ceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~ 89 (245)
+.+.+.|++..+. .+...+++++|+++++||+-+|+|+||||||-..++|+|..+- +.-..+|++.++...+..
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5688999998763 3346799999999999999999999999999999999999864 356677888777655444
Q ss_pred CCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCC---CCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 90 SPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWP---RQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
..++...+.|+++||+|...+ +..++...+.-..+ .....+..-.+...++-++|..+|+.+. .+..+|++|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 334444567999999996544 33455443332211 1111222223445577889999999753 24579999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||-|+|+||.|++.+|++||+||||+++|+.++.+++.+|.++++ +.||++++||+..+...||++-+|.=|+-+..
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999975 48999999999999999999999988876543
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.98 E-value=2.2e-31 Score=240.43 Aligned_cols=225 Identities=26% Similarity=0.331 Sum_probs=187.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC-CCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN-DGEPNNSP 91 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~ 91 (245)
.+.+.|+++||+..-.. ..+.+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ...+ .
T Consensus 253 pg~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~---~ 328 (501)
T COG3845 253 PGEVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS---P 328 (501)
T ss_pred CCCeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC---H
Confidence 35778999999987643 24689999999999999999999999999999999999999999999999997 2222 2
Q ss_pred CCCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCC----CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 92 EPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQ----SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
...++..+||||.+.. -+...+|+.||+.+..... ...............++++.+++.......++.+||||.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 2234567999999862 2456789999998863321 111112344566788899999986444577899999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+||+-+||=|..+|++||+.+||.|||..+.+.+.+.|.+.++ +++|+++|-|++++..+|||+.+|.+|+++...
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 9999999999999999999999999999999999999999875 699999999999999999999999999997643
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=4.9e-31 Score=246.11 Aligned_cols=194 Identities=26% Similarity=0.349 Sum_probs=159.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++|++..-+++ ...+++.||++++||.+.|.||||||||||+|+|+|+.|.-+|+|.+- .
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------~------ 454 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------A------ 454 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------C------
Confidence 4689999999998875 478999999999999999999999999999999999999999988652 0
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-----CCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-----LDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGqkqrv 169 (245)
...+-|+||.| +++..|.+|-+.++.... . ...+.+.++|..+||.+.. .++=-..||+|||||+
T Consensus 455 -~~~~lflpQ~P--Y~p~GtLre~l~YP~~~~--~-----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 455 -DSALLFLPQRP--YLPQGTLREALCYPNAAP--D-----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred -CCceEEecCCC--CCCCccHHHHHhCCCCCC--C-----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence 24588999998 678889999999863221 1 1123466777888876420 0111246999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||.|+++|++++|||.|++||+.+...+++++++-..+.|||-|+|.... ..+.++.+.+.+
T Consensus 525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl-~~~h~~~l~l~~ 588 (604)
T COG4178 525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL-WNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh-HHHHhhheeecc
Confidence 9999999999999999999999999999999999987778999999999765 566677666653
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=4.2e-31 Score=270.22 Aligned_cols=217 Identities=22% Similarity=0.296 Sum_probs=151.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHH---------HHhCCCCCCcc----e----EEE
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ---------LLAGLSKPTSG----S----INI 78 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~---------~l~Gl~~p~~G----~----i~~ 78 (245)
..|++++++. ..|+++||+|++||+++|+|+||||||||++ .|.|...+..+ . |.+
T Consensus 599 ~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 599 GTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred CeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 3688888752 2599999999999999999999999999999 66775433111 1 233
Q ss_pred cCccCCCCCCCCCCC------CC--------------CCcEEEEecC------------------CC-------------
Q 035832 79 RGYNNDGEPNNSPEP------LP--------------PEKVGIVFQF------------------PE------------- 107 (245)
Q Consensus 79 ~g~~~~~~~~~~~~~------~~--------------~~~i~~v~Q~------------------~~------------- 107 (245)
+-..+...+...... .. .....|.|+. +.
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 333332211100000 00 0112233332 00
Q ss_pred ------CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh---hC
Q 035832 108 ------RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV---QV 178 (245)
Q Consensus 108 ------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~---~~ 178 (245)
..+...||.|++.++................++ ++++.+|+.+..+++++.+|||||+||++|||||+ .+
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCC
Confidence 123356888888775321100000112334445 57899999863258999999999999999999998 69
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe------CCeEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD------MGGFLVEQ 241 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~------~G~i~~~~ 241 (245)
|+++||||||+|||+..++.++++|.++.+ +.|||++||+++.+ .+||++++|. +|++++++
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeC
Confidence 999999999999999999999999999864 68999999999998 7999999996 67887764
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-32 Score=240.07 Aligned_cols=203 Identities=28% Similarity=0.330 Sum_probs=157.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|+.|.|.... .-+..||++|++||++.|+|.||||||||+++++|+++|++|+|++||+++..... ...|
T Consensus 322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l----edYR 396 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL----EDYR 396 (546)
T ss_pred ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH----HHHH
Confidence 599999999997643 35789999999999999999999999999999999999999999999998865432 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCC--CCCCCChHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDK--DPHSLSGGYKRRLALA 172 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~--~~~~LSgGqkqrv~iA 172 (245)
+-++-||.|.. +|+. + ++ +... ...+.++.+++++.+.+. ..+. .+-.||.|||+|+++.
T Consensus 397 ~LfSavFsDyh-LF~~-l------l~-~e~~-------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 397 KLFSAVFSDYH-LFDQ-L------LG-PEGK-------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHhhhHh-hhHh-h------hC-CccC-------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 55777777752 3321 1 11 1110 112234555665555321 1122 3557999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
-|++-+.+++++||=-+.-||.-++.+++.+-- +++ ++||+.||||-. ....+||.+.+++|++++..
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~-YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH-YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch-hhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999988765 454 699999999965 45689999999999998754
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=236.82 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=148.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-++++|+++.|.+ +.+++|++|++++|+.+||+|||||||||+|++|+|-..|..-++-+.-.+- .... +. .
T Consensus 75 dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~-e~~p---s~--~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR-EIEP---SE--K 146 (614)
T ss_pred cceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc-cCCC---ch--H
Confidence 4899999999975 5789999999999999999999999999999999999998655553321100 0000 00 0
Q ss_pred CcEEEEecCCCCC-CCcccHHHHHHhcCCCCCCc-----h-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERY-FVADNVLDEVIFGWPRQSGS-----I-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~-----~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
+-+-++++..... ..-.--.|.+.-........ . ......+.++.+++.-+|......++....||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 1111222110000 00000011111110000000 0 00012233455666666665545688999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|.|++|||||..+|++|||||||++||+++...+-+.|.+.... ++++++|+-+++-.+|..|+.+++++.+.-+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeec
Confidence 99999999999999999999999999999999999999887543 8999999999999999999999999865543
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=6.4e-30 Score=251.75 Aligned_cols=102 Identities=27% Similarity=0.414 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..+.++.+||....+++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..++++|+++.+ +.|||++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567889999864468999999999999999999999999 99999999999999999999999999864 6899999
Q ss_pred ecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
||+++.+. .||+++.| ++|+++..+.
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt 921 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGT 921 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCC
Confidence 99999885 79999999 6899987653
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-31 Score=263.89 Aligned_cols=214 Identities=28% Similarity=0.323 Sum_probs=169.7
Q ss_pred EEEEeEEEEC--CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCcceEEEcCccCCCCCCCCCCC
Q 035832 18 LEVRDVSYRP--PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--PTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 18 l~~~~l~~~y--~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
....|+.+.. .++.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+... .
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-------~ 860 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-------E 860 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-------h
Confidence 3344444432 3445789999999999999999999999999999999999753 247999999987532 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCC-CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC----CChHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWP-RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS----LSGGYKRR 168 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----LSgGqkqr 168 (245)
-.++.+|||-|+.. ..+..||+|-+.|... +..... ...+..+.++++++.++|++. .+.-++. ||..||+|
T Consensus 861 tF~R~~GYvqQ~Di-H~~~~TVrESL~fSA~LRlp~~v-~~~ek~~yVe~Vi~lleL~~~-~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 861 TFARVSGYVEQQDI-HSPELTVRESLRFSAALRLPKEV-SDEEKYEYVEEVIELLELKEY-ADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred hhccccceeecccc-cCcccchHHHHHHHHHHcCCCcC-CHHHHHHHHHHHHHHhCchhh-hhhhccCCCCCCCHHHhce
Confidence 24678999999974 5688999999998632 211111 123334568899999999875 4665555 99999999
Q ss_pred HHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhH-HHhhccEEEEEeCC-eEEEec
Q 035832 169 LALAIQLVQVP-DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKE-MAALVDHSWRMDMG-GFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~-~~~~~d~v~~l~~G-~i~~~~ 241 (245)
+.||--|+.+| .||+|||||||||..+...+++.++++.. |.||+++-|.+.. +.+..|++++|+.| +.|.-+
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 99999999999 99999999999999999999999999975 7999999998754 55678999999875 455443
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=230.42 Aligned_cols=188 Identities=30% Similarity=0.323 Sum_probs=147.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++..++++.|++ ..|+==.=+|..||+++++||||-||||+.++|+|.++|++|+ ..
T Consensus 341 ~lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~-------------- 399 (591)
T COG1245 341 TLVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE-------------- 399 (591)
T ss_pred eeeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc--------------
Confidence 34455555555542 1233333345578899999999999999999999999999997 11
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.-+|+|=||.-.. -...||.+.+.-........ .+ --.++++-++|+.. +++++.+|||||.|||+||.||
T Consensus 400 ~~~vSyKPQyI~~-~~~gtV~~~l~~~~~~~~~~----s~---~~~ei~~pl~l~~i-~e~~v~~LSGGELQRvaIaa~L 470 (591)
T COG1245 400 DLKVSYKPQYISP-DYDGTVEDLLRSAIRSAFGS----SY---FKTEIVKPLNLEDL-LERPVDELSGGELQRVAIAAAL 470 (591)
T ss_pred cceEeecceeecC-CCCCcHHHHHHHhhhhhccc----ch---hHHhhcCccchHHH-HhcccccCCchhHHHHHHHHHh
Confidence 1358899997643 24679988876542211111 11 12456777899876 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
..+++++|||||++.||.+.+..+-+.|++..+ ++|.++|.||+-.+.-++||+++.+
T Consensus 471 ~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999999999999864 4899999999999999999999987
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1.8e-30 Score=222.71 Aligned_cols=200 Identities=18% Similarity=0.163 Sum_probs=130.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-CCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~~~~ 96 (245)
|+++|. +.|.+ . .+|.+.++ +++|+||||||||||+.+|++++.+..|+++..+.+ +-............
T Consensus 4 i~l~nf-~~~~~--~-----~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 4 LELENF-KSYKG--R-----HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEECc-cccCC--C-----eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 667776 45632 1 12333344 999999999999999999999998888888665421 10000000000112
Q ss_pred CcEEEEecC--CCCCCCcccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---------------------
Q 035832 97 EKVGIVFQF--PERYFVADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--------------------- 152 (245)
Q Consensus 97 ~~i~~v~Q~--~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------------- 152 (245)
..+.+.|+. +...+...++.+... +.. . ... .....+.++++.+|+...
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~i-n--gk~----~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~ 147 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRI-N--GKV----VSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPG 147 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEE-C--CEE----ecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcc
Confidence 345555543 321222222222111 110 0 111 112234577788888421
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQV----PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
..++++.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|.++.+ +.+||+|||+.+. ..+||
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d 226 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKAD 226 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCC
Confidence 01234589999999999999999875 899999999999999999999999999875 6899999999776 47899
Q ss_pred EEEEEeC
Q 035832 228 HSWRMDM 234 (245)
Q Consensus 228 ~v~~l~~ 234 (245)
++++|..
T Consensus 227 ~i~~~~~ 233 (247)
T cd03275 227 ALVGVYR 233 (247)
T ss_pred eEEEEEe
Confidence 9999863
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.1e-30 Score=231.11 Aligned_cols=200 Identities=28% Similarity=0.381 Sum_probs=166.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
-..|.|++.+|+|.|..+.-+.+.++++.++.-+.++++|+||+||||+++++.|-..|..|.+.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~------------- 424 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH------------- 424 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-------------
Confidence 3466899999999997643368999999999999999999999999999999999999999988663
Q ss_pred CCCCCcEEEEecCCCCCCCcccH--HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNV--LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv--~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.|.+|+|-+|.-. -+...+| .+.+.-.++ +. .++.++..+..||++.....+.+..||||||-||+
T Consensus 425 --~r~ri~~f~Qhhv-d~l~~~v~~vd~~~~~~p---G~------~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 425 --PRLRIKYFAQHHV-DFLDKNVNAVDFMEKSFP---GK------TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA 492 (582)
T ss_pred --ccceecchhHhhh-hHHHHHhHHHHHHHHhCC---CC------CHHHHHHHHHhcCCCchhhhccccccCCcchhHHH
Confidence 2567999999853 2333333 222222111 11 23456778999999876667778999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|.+...+|-+|+|||||+.||.++...+-+.|+... ..||+||||.+++...|+.+|+.++|++..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999999888875 469999999999999999999999999864
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1.3e-29 Score=210.69 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=123.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++++++++.+| +.+|+||||||||||+.+|......... ....|..+..... .......|.+.||+.. .+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~---~~~~~~~i~~~~~~~~-~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIK---DGESSAKITVTLKNQG-LDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhh---CCCCeEEEEEEEEcCC-ccC---
Confidence 57788888887 8899999999999999999854332211 1111211100000 0011356889998864 221
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~llllDEPts~ 190 (245)
| . .. ......+.++++. ... .++++.+||+|||||++||+|+ +.+|+++||||||++
T Consensus 83 ---~---~-----~~----~~~~~~~~~~l~~---~~~-~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 83 ---N---P-----LC----VLSQDMARSFLTS---NKA-AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred ---C---c-----CC----HHHHHHHHHHhcc---ccc-cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 1 0 00 0112345566665 443 6889999999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHhh-c--C-ceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 191 LDWKARADVVKLLKHLK-K--E-LTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~-~--~-~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||+..+..+.++|.++. + + .|||++||+++++..+ |+|.+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 99999999999999874 3 3 5899999999999876 9999998643
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.8e-30 Score=227.83 Aligned_cols=197 Identities=25% Similarity=0.376 Sum_probs=161.4
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
-..|+|-+.+|+|.|++ .++.+.+++|-|.--..+||+||||.||||||++|.|-+.|..|+.+-+
T Consensus 582 L~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn------------- 647 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN------------- 647 (807)
T ss_pred CCCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-------------
Confidence 45778999999999986 4689999999999999999999999999999999999999999987532
Q ss_pred CCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+-+|||.-|+....+. ..|..|.+.-.+.. ..+.++..|-.+||.....--.+..||||||-||++
T Consensus 648 --hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl----------pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal 715 (807)
T KOG0066|consen 648 --HRLRIGWFDQHANEALNGEETPVEYLQRKFNL----------PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL 715 (807)
T ss_pred --ceeeeechhhhhHHhhccccCHHHHHHHhcCC----------ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence 24579999888643332 34667766543211 122356678889997653334678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|-..+..|++|||||||++||.++...+-+.|.++. ..|||||||-.++.+.....|++++..|
T Consensus 716 aeLal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 716 AELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred HHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999999998875 4799999999988877778899887554
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.9e-28 Score=239.64 Aligned_cols=102 Identities=27% Similarity=0.406 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ---VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..++++.+||....+++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..++++|.++.+ +.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678889997533689999999999999999999997 5999999999999999999999999999864 6899999
Q ss_pred ecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
||+++.+. .||+++.| ++|+++..+.
T Consensus 888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~ 919 (924)
T TIGR00630 888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGT 919 (924)
T ss_pred eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCC
Confidence 99999885 79999999 7899987653
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=224.01 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=157.3
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..+.+|++++|+..-+.+...+++|+||+|.+|+-+.|.||||||||+|+|+++||.+-.+|++..-...
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~---------- 498 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG---------- 498 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----------
Confidence 3456899999999988644457889999999999999999999999999999999999999999763210
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-----CC-----CCCCCCC
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-----LD-----KDPHSLS 162 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~-----~~~~~LS 162 (245)
-.+.+-|+||.| ++...|.+|.+.++........ +....+++.+.|+.++|.+.. ++ .=...||
T Consensus 499 --~~~~lfflPQrP--Ymt~GTLRdQvIYP~~~~~~~~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 499 --GPKDLFFLPQRP--YMTLGTLRDQVIYPLKAEDMDS--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred --CCCceEEecCCC--CccccchhheeeccCccccccc--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 014589999999 5777799999998732211110 111123445555555544320 11 1135799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
+||+||+++||.+.++|++-+|||.||++|.+....+++.+++. +.|.|-|+|.-.+. .+=|.++.|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH-hhhhEEEEecC
Confidence 99999999999999999999999999999999999999888765 68999999998764 56689999874
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-29 Score=229.72 Aligned_cols=194 Identities=25% Similarity=0.256 Sum_probs=142.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|.+.+++..|++ +.+|++-++++..|..+||+|+||+|||||||+|+. |.|...... . ..+
T Consensus 80 Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----q-----E~~ 141 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----Q-----EVR 141 (582)
T ss_pred ceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----h-----hee
Confidence 4889999999975 568999999999999999999999999999999997 555433211 0 001
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
. .+++-..... ...+.+..+...-... .......+...++|.-+|.++....++..+||||=|.|++|||||.
T Consensus 142 g--~~t~~~~~~l-~~D~~~~dfl~~e~~l----~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 142 G--DDTEALQSVL-ESDTERLDFLAEEKEL----LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred c--cchHHHhhhh-hccHHHHHHHHhhhhh----hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence 0 1222111111 2223333222210000 0000112223338888999876567889999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+||||||||||+.||..+...+.+.|..+. .|+|+||||-.++-..|..|+.+++-++
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999998875 7999999999999999999988876443
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.95 E-value=1.7e-27 Score=194.28 Aligned_cols=209 Identities=25% Similarity=0.333 Sum_probs=160.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC---
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP--- 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~--- 91 (245)
.-.|++.++.|+|+..+ |++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|.+.|.+......-..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 44699999999998654 89999999999999999999999999999999999877777999999987543211000
Q ss_pred ----CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 92 ----EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ----~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
...+.+.+++--.-| +...+++. .+.|+.. ...+ ++-+++++.++++ +..+.+.+|-|||+
T Consensus 90 l~YLGgeW~~~~~~agevp--lq~D~sae-~mifgV~----g~dp-----~Rre~LI~iLDId---l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVP--LQGDISAE-HMIFGVG----GDDP-----ERREKLIDILDID---LRWRMHKVSDGQRR 154 (291)
T ss_pred eeEeccccccccccccccc--ccccccHH-HHHhhcc----CCCh-----hHhhhhhhheecc---ceEEEeeccccchh
Confidence 011222333322222 11234444 4445421 1111 2234566777775 35578899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||.||+.|++.=++|+|||-|-.||..++..+++.+++-.+ ++||+..||-.+-++..+.+++.|++|+++.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999999999999999998653 5899999999999999999999999999975
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.94 E-value=9.6e-27 Score=193.65 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=109.8
Q ss_pred eeeeeEEEcCCC-EEEEECCCCCcHHHHHHHHh--------CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecC
Q 035832 35 LNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLA--------GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQF 105 (245)
Q Consensus 35 l~~vsl~i~~Ge-~~~liG~nGsGKSTLl~~l~--------Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~ 105 (245)
+-++||++.+|+ +++|+||||||||||+|+|+ |...|.... ..++|+.|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~---------------------~~~~~~~~~ 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG---------------------SSLPVFENI 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc---------------------ccCcCccEE
Confidence 568999999995 89999999999999999998 444332110 112332222
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD 185 (245)
.. .++..+. .++...++|+||+|++.+++++ .+|+++|+|
T Consensus 76 ~~--------------------------------------~lg~~~~-l~~~~s~fs~g~~~~~~i~~~~-~~p~llllD 115 (200)
T cd03280 76 FA--------------------------------------DIGDEQS-IEQSLSTFSSHMKNIARILQHA-DPDSLVLLD 115 (200)
T ss_pred EE--------------------------------------ecCchhh-hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEc
Confidence 10 0111111 3455678999999999999884 899999999
Q ss_pred CCCCCCCHHHHHHHH-HHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 186 EPLAGLDWKARADVV-KLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 186 EPts~LD~~~~~~i~-~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||+|||+..+..++ .+++.+.+ +.++|++||+. .+..+||+++.|++|+++.+
T Consensus 116 Ep~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 116 ELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEe
Confidence 999999999999996 46777764 68999999995 46789999999999999765
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2.3e-26 Score=193.21 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=113.7
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++++.+++.+| +.+|+|||||||||||.+|.-.+-...... ......... .........|-..++..... -
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~---i~~g~~~~~v~~~~~~~~~~----~ 84 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEF---VKRGCDEGTIEIELYGNPGN----I 84 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHH---hhCCCCcEEEEEEEEeCCCc----c
Confidence 46667777665 778999999999999999877663221100 000000000 00000012233344332110 1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~llllDEPts~ 190 (245)
..+|+.+... .. ...+.....-.+.+..+.-.....+..+.+||+|||||+.+|+++ +.+|+++|+||||++
T Consensus 85 ~~~n~~~~~~---q~-~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQFLP---QD-RVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceEEEc---hH-HHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 1122221100 00 000001111122332332211124678899999999999877654 589999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--C-ceEEEEecChhHHHhhcc--EEEEEeCCeE
Q 035832 191 LDWKARADVVKLLKHLKK--E-LTILVVSHDLKEMAALVD--HSWRMDMGGF 237 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~--~-~tiii~tHd~~~~~~~~d--~v~~l~~G~i 237 (245)
||+..+..+++.|.++.+ + .++|++||++.....+|| +|++|++|+-
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~~ 212 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGPH 212 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCcc
Confidence 999999999999999853 4 589999999988888876 7888888874
No 398
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=3.4e-26 Score=207.73 Aligned_cols=184 Identities=22% Similarity=0.406 Sum_probs=140.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|.++|+-.--+.++ .++..++|.|++|-.+.|+||||||||+|+|+|.|+.|...|...+ + +.
T Consensus 481 gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P-------~~ 544 (728)
T KOG0064|consen 481 GIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------P-------RP 544 (728)
T ss_pred ceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------C-------CC
Confidence 388999988877654 5889999999999999999999999999999999999987776654 1 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC---------CCCCChHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD---------PHSLSGGYKR 167 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkq 167 (245)
.++-|+||.| ++...|.+|.+.++... .....+...++.+..+|..+.|++. +.+. -..|||||||
T Consensus 545 ~~mFYIPQRP--Yms~gtlRDQIIYPdS~--e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRP--YMSGGTLRDQIIYPDSS--EQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCC--ccCcCcccceeecCCcH--HHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhccHHhhccchHHH
Confidence 4699999999 55667888888875210 0000011112234455555555432 2222 2469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHH
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMA 223 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~ 223 (245)
|+++||.+.+.|+..+|||.||+..+.....+++..++. +.+.|-|||.+....
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk 673 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHH
Confidence 999999999999999999999999999998888877654 689999999998754
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=8.3e-25 Score=196.06 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=138.6
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEE-EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN----- 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~-i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~----- 77 (245)
.|+...|.+-| +..+|+.+. ++=..|- ..+|+++||+||||-||||-+|+|+|.++|.=|+..
T Consensus 61 kCPF~AI~IvnLP~eLe~e~vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~w 137 (591)
T COG1245 61 KCPFDAISIVNLPEELEEEVVHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSW 137 (591)
T ss_pred cCCcceEEEecCchhhcccceeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCH
Confidence 45555566655 356776432 3333333 358999999999999999999999999999755431
Q ss_pred ------EcCccCCCCCCCCCCCCCCCcEEEEecCCCCC--CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC
Q 035832 78 ------IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149 (245)
Q Consensus 78 ------~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 149 (245)
|.|..+...-..... -.-++..=+|..+.. ....+|.|-+.- ....-..+++++.++|
T Consensus 138 deVi~~FrGtELq~YF~~l~~--g~~r~v~K~QYVd~iPk~~KG~v~elLk~------------~de~g~~devve~l~L 203 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYE--GELRAVHKPQYVDLIPKVVKGKVGELLKK------------VDERGKFDEVVERLGL 203 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHc--CCcceecchHHHHHHHHHhcchHHHHHHh------------hhhcCcHHHHHHHhcc
Confidence 001000000000000 000111112221100 001122222211 0111246778999999
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccE
Q 035832 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 150 ~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~ 228 (245)
.+. +++.+++|||||-||++||.|++.+++++++|||||-||...+-...+.++++.+ +++||+|.||+..+.-++|.
T Consensus 204 ~nv-l~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 204 ENV-LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred hhh-hhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 986 7999999999999999999999999999999999999999999999999999987 59999999999988888999
Q ss_pred EEEEe
Q 035832 229 SWRMD 233 (245)
Q Consensus 229 v~~l~ 233 (245)
|.++-
T Consensus 283 vhI~Y 287 (591)
T COG1245 283 VHILY 287 (591)
T ss_pred eEEEe
Confidence 88875
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.92 E-value=5.7e-24 Score=173.94 Aligned_cols=73 Identities=27% Similarity=0.316 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 161 LSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 161 LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
||+||+||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.+ +.++|++||+.+.+ ..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999999865 48999999999876 58999999975
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=190.43 Aligned_cols=184 Identities=26% Similarity=0.347 Sum_probs=148.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEe
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--------SKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVF 103 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 103 (245)
..+++|+||++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--.. --+++|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------------~~a~iP 460 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------------VSALIP 460 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc---------------hhhccC
Confidence 4689999999999999999999999999999999997 57889988762111 123555
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc-cCCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT-SLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkqrv~iAral~~~p~ll 182 (245)
-..+..|...|+.|.+.-. .+. -..+.++|+..|+.+. ...+++++||-|||.|+.||++++..|.++
T Consensus 461 ge~Ep~f~~~tilehl~s~----tGD-------~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 461 GEYEPEFGEVTILEHLRSK----TGD-------LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred cccccccCchhHHHHHhhc----cCc-------hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 5544445555777766432 111 1134577888999763 235678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 183 ILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 183 llDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
+.||-.|.||+.+...+..-|.++++ +.|++++||+.+....+ .|.++.+.-|+...+.
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~e 591 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccccC
Confidence 99999999999999999999999974 68999999999999888 7999999888776543
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.90 E-value=6.3e-24 Score=176.62 Aligned_cols=145 Identities=23% Similarity=0.248 Sum_probs=104.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..+++|++|+. |++++|+||||||||||+|+|+|... +.+.|.++.. + .+++| +..+|.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~--~~~~q-~~~l~~ 72 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------S--SFELP-PVKIFT 72 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------C--ccCcc-cceEEE
Confidence 35778887775 79999999999999999999988553 1234443311 1 36677 445778
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.++... ...+. .++.++++.+++ .+|+++|+||||+|+
T Consensus 73 ~~~~~d~l~~~~s~------~~~e~-~~~~~iL~~~~~---------------------------~~p~llllDEp~~gl 118 (199)
T cd03283 73 SIRVSDDLRDGISY------FYAEL-RRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGT 118 (199)
T ss_pred eccchhccccccCh------HHHHH-HHHHHHHHhccC---------------------------CCCeEEEEecccCCC
Confidence 88999999886311 11222 346667766552 799999999999999
Q ss_pred CHHHHHHHH-HHHHHhhc-CceEEEEecChhHHHhh--ccEEEE
Q 035832 192 DWKARADVV-KLLKHLKK-ELTILVVSHDLKEMAAL--VDHSWR 231 (245)
Q Consensus 192 D~~~~~~i~-~~l~~l~~-~~tiii~tHd~~~~~~~--~d~v~~ 231 (245)
|+..+..+. .+++.+.+ +.++|++||+++++... .++|-.
T Consensus 119 D~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 119 NSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 999998775 46777754 58999999999988765 344433
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.3e-23 Score=180.51 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=69.8
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 159 HSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
..|||||+||++||++++. +|+++++||||++||+..+..+.+.|.++.++.|+|++||+++. ..+||++++|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~-~~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV-AAMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH-HHhcCcEEEEEE
Confidence 3499999999999997654 99999999999999999999999999998777899999999985 579999999987
Q ss_pred Ce
Q 035832 235 GG 236 (245)
Q Consensus 235 G~ 236 (245)
+.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 63
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.90 E-value=4.7e-23 Score=166.00 Aligned_cols=139 Identities=26% Similarity=0.275 Sum_probs=102.2
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCCCcc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYFVAD 113 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~ 113 (245)
....++.+.++.+++|+|||||||||+++.+....-..+|.+.... + .+.| ++++... .+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~--------------~~~g~~~~~~~~-~~--- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-G--------------VKAGCIVAAVSA-EL--- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-c--------------ccCCCcceeeEE-EE---
Confidence 3455566666779999999999999999998877655555443210 0 0011 1111100 00
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts 189 (245)
+. ...+||+||+||++||++|+. +|+++|+|||++
T Consensus 72 -----------------------------------i~------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~ 110 (162)
T cd03227 72 -----------------------------------IF------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDR 110 (162)
T ss_pred -----------------------------------eh------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 00 001299999999999999987 789999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 190 GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|+|+..+..+.+.+.++.. +.++|++||+.+.+. .+|+++.|..
T Consensus 111 gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 111 GLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 9999999999999988754 589999999999765 6899999974
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.8e-23 Score=205.19 Aligned_cols=203 Identities=26% Similarity=0.294 Sum_probs=162.0
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
..+++|+|.-+++|+.+.++||.||||||||++++|-+.- ..|+|.++|.+..... .++.++|+.|+. .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~-------~~~~~aY~~e~D-v 199 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFV-------PKKTVAYNSEQD-V 199 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccc-------cCceEEeccccc-c
Confidence 4699999999999999999999999999999999998753 2579999998865432 146799999996 4
Q ss_pred CCCcccHHHHHHhcCCCCCC----chhHHHH-HHHHHHHHHHHcCCCCcc----CCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 109 YFVADNVLDEVIFGWPRQSG----SIQLKEY-LALNLQRAINWVGLDGTS----LDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
.++.+||+|-+.|...-... ....+.+ .....+.+++.+||+... -|......|||||+||++|-+++.+|
T Consensus 200 H~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 200 HFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred ccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCc
Confidence 78999999999886321111 0011111 122456789999998641 24456679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecC-hhHHHhhccEEEEEeCCeEEEecc
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHD-LKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd-~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++.+||+|.|||..+.-++.+.|+.+.. +.|.+++-|. .+++..+.|.|++|.+|+++..+.
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEecc
Confidence 99999999999999999999999999864 4666666664 456778899999999999998763
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.89 E-value=7.6e-24 Score=178.97 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=111.8
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~ 110 (245)
..+.+|++|++.++++++|.||||+|||||+++++-. .+ ..++| |||.+.. .+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~-----------------la~~g~~vpa~~~-~~ 70 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL-----------------MAQIGCFVPCDSA-DI 70 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH-----------------HHHhCCCcCcccE-EE
Confidence 3589999999999999999999999999999999821 00 12344 5554431 11
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC-
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL--VQVPDLLILDEP- 187 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral--~~~p~llllDEP- 187 (245)
.. +++++..+++.+. ....+|.|++|++.+++++ +.+|+++|||||
T Consensus 71 ---~~------------------------~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~ 119 (222)
T cd03285 71 ---PI------------------------VDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELG 119 (222)
T ss_pred ---ec------------------------cceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 00 1123344555432 2568999999999999999 999999999999
Q ss_pred --CCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 188 --LAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 188 --ts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++||+.+.... +++.+. .+.++|++||+ .++.++||++..+++|++....
T Consensus 120 ~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 120 RGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred CCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEE
Confidence 999999988543 334443 35899999996 6678899999999999887644
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.87 E-value=1.2e-22 Score=169.20 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=101.9
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+-..++++.+|++++|+||||||||||+++|++.. .+..|..... .+..+++..|.. ...
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~---------------~~~~i~~~dqi~----~~~ 79 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA---------------ESASIPLVDRIF----TRI 79 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc---------------cccccCCcCEEE----EEe
Confidence 34556667789999999999999999999999543 2223322110 012233322211 000
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
+..+. .......+|.+++| +..+.+++.+|+++|+||||+|+|+
T Consensus 80 ----------------------------------~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~ 123 (202)
T cd03243 80 ----------------------------------GAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTST 123 (202)
T ss_pred ----------------------------------cCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCH
Confidence 11111 23344567777766 6666788899999999999999999
Q ss_pred HHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 194 KARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 194 ~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
..+..+.. +++.+.+ +.++|++||+.+.+ ..|+++..+..+++..+.
T Consensus 124 ~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~-~~~~~~~~l~~~~~~~~~ 172 (202)
T cd03243 124 AEGLAIAYAVLEHLLEKGCRTLFATHFHELA-DLPEQVPGVKNLHMEELI 172 (202)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECChHHHH-HHhhcCCCeEEEEEEEEe
Confidence 98888755 5566654 68999999998765 578888888888876554
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=3.2e-21 Score=198.25 Aligned_cols=103 Identities=24% Similarity=0.252 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV 214 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii 214 (245)
+..+.|..+||....+.++..+|||||.||+-||.-|..+ +.+++|||||.||++...+.+++.|.++.. +.|||+
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456788899998888999999999999999999999876 799999999999999999999999999964 699999
Q ss_pred EecChhHHHhhccEEEEEe------CCeEEEecc
Q 035832 215 VSHDLKEMAALVDHSWRMD------MGGFLVEQR 242 (245)
Q Consensus 215 ~tHd~~~~~~~~d~v~~l~------~G~i~~~~~ 242 (245)
|.||++.+.. ||+++-|- .|+|++++.
T Consensus 1758 ieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gt 1790 (1809)
T PRK00635 1758 IDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGP 1790 (1809)
T ss_pred EeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeC
Confidence 9999998765 99999994 367777664
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-22 Score=181.87 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=144.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCC--
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPE-- 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~-- 92 (245)
-|+++|.+.+-.+ +..+.|.||.|-.|..++|+||||-||||||+-|+.- --|..=.|.++.+.+-..+.....
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 4899999988754 4689999999999999999999999999999999753 123333455554433211100000
Q ss_pred -CCCCCcEEEEecCCC--CCC--CcccHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 93 -PLPPEKVGIVFQFPE--RYF--VADNVLDEVIFGWP--RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 93 -~~~~~~i~~v~Q~~~--~~~--~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
..-.++..++-.... ..+ ...|+.|.+.-.+. +..+ ....+.+++.+|.-+|.+...-+++...+|||-
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG----A~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG----ADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc----cccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 000011111110000 000 11222222211000 0000 011233566778888888765577888999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|.||+|||||..+|-+|+|||||+.||......+-++|..++ +|++|||||-.++...|..|+.|++.++.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999888888875 69999999999999999999999876653
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.3e-20 Score=163.69 Aligned_cols=78 Identities=31% Similarity=0.419 Sum_probs=67.6
Q ss_pred CCCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhc-
Q 035832 157 DPHSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALV- 226 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~- 226 (245)
....+|+||+|+++||++|+ .+|+++|+||||++||+..++.+++.+.++. .+++++|+.+.+..+|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhc
Confidence 35568999999999999985 7999999999999999999999999998764 4677777777777887
Q ss_pred --cEEEEEeCCeE
Q 035832 227 --DHSWRMDMGGF 237 (245)
Q Consensus 227 --d~v~~l~~G~i 237 (245)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=6.9e-21 Score=188.11 Aligned_cols=99 Identities=31% Similarity=0.430 Sum_probs=89.8
Q ss_pred HHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecC
Q 035832 142 RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHD 218 (245)
Q Consensus 142 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd 218 (245)
++++.+||....+++++.+|||||+|||+||+||+.+| +++||||||+|||+..++.++++|+++++ +.|||+|+|+
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36788899754369999999999999999999999997 99999999999999999999999999975 6899999999
Q ss_pred hhHHHhhccEEEEE------eCCeEEEec
Q 035832 219 LKEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
++++. .||+|++| ++|+++.++
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g 578 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVVASG 578 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEeecc
Confidence 99986 69999999 889998754
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.85 E-value=2.6e-21 Score=161.45 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=102.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~ 110 (245)
..+.+|++|++++|++++|+||||+||||++++++++.- ..++| ++|-. .
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------------la~~G~~vpa~----~ 66 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------------MAQIGCFVPAE----Y 66 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------------HHHcCCCcchh----h
Confidence 468999999999999999999999999999999998741 01122 22221 2
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
...++.+++... ++..+. ..+..+++|+|++|+ ..+.+++.+|+++|+|||++|
T Consensus 67 ~~l~~~d~I~~~------------------------~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~g 120 (204)
T cd03282 67 ATLPIFNRLLSR------------------------LSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRG 120 (204)
T ss_pred cCccChhheeEe------------------------cCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCC
Confidence 233445554321 233222 456677899999975 555668899999999999999
Q ss_pred CCHHHHHHH-HHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 191 LDWKARADV-VKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 191 LD~~~~~~i-~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
+|+.....+ ..+++.+.+ +.++|++||+.+.+...+
T Consensus 121 t~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 121 TSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 999776655 445666654 689999999999887655
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=5.7e-20 Score=174.43 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..+.|-.+||....+.++..+|||||.|||-||.-|.... .++||||||.||-..-.+++++.|.++.. +.|||+|
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456777899877789999999999999999999998887 99999999999999999999999999974 6899999
Q ss_pred ecChhHHHhhccEEEEEe------CCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRMD------MGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l~------~G~i~~~~~ 242 (245)
.|+++.+ ..||+|+-|- .|+|++++.
T Consensus 882 EHNLdVI-k~AD~IIDLGPeGG~~GG~iva~GT 913 (935)
T COG0178 882 EHNLDVI-KTADWIIDLGPEGGDGGGEIVASGT 913 (935)
T ss_pred ecccceE-eecCEEEEcCCCCCCCCceEEEecC
Confidence 9999976 5799999983 466776654
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.2e-20 Score=186.19 Aligned_cols=98 Identities=31% Similarity=0.411 Sum_probs=88.5
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.+..+||....+++++.+|||||+|||.||+||+.+| +++||||||+|||+..++.++++|+++.+ +.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888754368999999999999999999999986 89999999999999999999999999965 68999999999
Q ss_pred hHHHhhccEEEEE------eCCeEEEec
Q 035832 220 KEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 220 ~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
+++. .||++++| ++|+++.++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEeecc
Confidence 9886 89999999 889988754
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.83 E-value=6.2e-20 Score=163.76 Aligned_cols=181 Identities=25% Similarity=0.321 Sum_probs=140.4
Q ss_pred EECCCCccceeeeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCc
Q 035832 25 YRPPGTQVDILNGVSFSLPEKS-----FGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
++|++- +..+.++.|.|..|+ ++..+|.||.|||||+++++|.++|++| +|- .-.
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p------------------~ln 403 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP------------------VLN 403 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc------------------ccc
Confidence 567653 457889999999885 6889999999999999999999999866 221 124
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
|+|=||....- ...||++-+.--... ......-+.+.++-+.+++. .++.+.+|||||+|||++|.+|-..
T Consensus 404 VSykpqkispK-~~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i-~dqevq~lSggelQRval~KOGGKp 474 (592)
T KOG0063|consen 404 VSYKPQKISPK-REGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENI-IDQEVQGLSGGELQRVALALCLGKP 474 (592)
T ss_pred eeccccccCcc-ccchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHH-HhHHhhcCCchhhHHHHHHHhcCCC
Confidence 77888875432 345776655321100 00011234556677777775 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--hcCceEEEEecChhHHHhhccEEEEEe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l--~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+++++.|||.+-||.+.+..--..+++. +.++|-.+|.||.-.+--++|||++.+
T Consensus 475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 9999999999999999999888888885 456899999999887777899999987
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.79 E-value=7.9e-19 Score=147.80 Aligned_cols=146 Identities=22% Similarity=0.188 Sum_probs=95.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.+.+|++|+.++ ++++|+||||||||||+|+++++.-. ..|.. + + .....++++.|- +.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~------v---p------~~~~~i~~~~~i----~~ 78 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF------V---P------ASKAEIGVVDRI----FT 78 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe------e---c------cccceecceeeE----ec
Confidence 478999999887 99999999999999999999875422 11211 1 0 012456666542 34
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL--VQVPDLLILDEP-- 187 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral--~~~p~llllDEP-- 187 (245)
.+++.+++..+. |.=...++.+++++ +.+|+++|||||
T Consensus 79 ~~~~~~~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 79 RIGASDDLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred cCCchhhhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 455555554431 11122222233333 579999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 188 -LAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 188 -ts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+++|.... ...+++.+. . +.++|++||+.+ +..++|++..+.++++..
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~ 172 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAV 172 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEE
Confidence 888888653 233444443 3 579999999975 566888877777777654
No 417
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=6.5e-18 Score=141.96 Aligned_cols=135 Identities=22% Similarity=0.252 Sum_probs=91.9
Q ss_pred eeeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCC
Q 035832 34 ILNGVSFSLPEK--SFGLIFGRSGSGKTTLLQLLA--GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109 (245)
Q Consensus 34 il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (245)
+=+|+++ .++ .+++|+||||+|||||||.++ +++ +..|.+.+.. ..+++|..|.....
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---------------~~~~~~~d~i~~~l 79 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---------------SATIGLVDKIFTRM 79 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---------------CcEEeeeeeeeeee
Confidence 3455555 444 789999999999999999998 434 5667665521 23577777654211
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
-...++.+ +++. + .-+-||+++|++++.+|+++|+|||++
T Consensus 80 ~~~~si~~------------------------------~~S~---------f-~~el~~l~~~l~~~~~~slvllDE~~~ 119 (213)
T cd03281 80 SSRESVSS------------------------------GQSA---------F-MIDLYQVSKALRLATRRSLVLIDEFGK 119 (213)
T ss_pred CCccChhh------------------------------ccch---------H-HHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 00111110 0011 1 345699999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHhhc---C-ceEEEEecChhHHHhhc
Q 035832 190 GLDWKARADV-VKLLKHLKK---E-LTILVVSHDLKEMAALV 226 (245)
Q Consensus 190 ~LD~~~~~~i-~~~l~~l~~---~-~tiii~tHd~~~~~~~~ 226 (245)
|+|+.....+ ..+++.+.+ + .++|++||+.+.+....
T Consensus 120 gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 120 GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 9999764444 567777753 2 48999999999877653
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.76 E-value=3e-18 Score=148.47 Aligned_cols=135 Identities=22% Similarity=0.225 Sum_probs=92.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPR 125 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~ 125 (245)
.-++|+||||||||||+++|+|+++|++|+|.++|+++..... .......++++||+. .....+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~---~~ei~~~~~~~~q~~--~~~r~~v~~~~~----- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE---RSEIAGCVNGVPQHD--VGIRTDVLDGCP----- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh---HHHHHHHhccccccc--ccccccccccch-----
Confidence 5689999999999999999999999999999999998743210 011234566777764 222223322210
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 126 QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
. ..| ..+.+.+++|+++|+|||++ .+.+..+++.
T Consensus 182 ---------------------------------k--~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---------------------------------K--AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---------------------------------H--HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 0 001 13333347999999999974 3445556666
Q ss_pred hhcCceEEEEecChhH--H-----------HhhccEEEEEeCCe
Q 035832 206 LKKELTILVVSHDLKE--M-----------AALVDHSWRMDMGG 236 (245)
Q Consensus 206 l~~~~tiii~tHd~~~--~-----------~~~~d~v~~l~~G~ 236 (245)
+..+.++|++||+.+. + ..+++|+++|++|+
T Consensus 216 ~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 216 LHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 6667999999997654 4 26689999998764
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.76 E-value=8.7e-19 Score=144.11 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhc--CceEEEEecChhHHHhhccE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV-KLLKHLKK--ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~--~~tiii~tHd~~~~~~~~d~ 228 (245)
.++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.+ +.++|++||+.+ +..+|++
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~ 130 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE 130 (185)
T ss_pred hhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence 466788899998874444432 4599999999999999999877764 55666653 589999999996 5677875
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.75 E-value=2.7e-18 Score=144.43 Aligned_cols=184 Identities=25% Similarity=0.292 Sum_probs=101.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCC--CCCcceEEEcCccCCCCCC--CCCCCCCCCcEEEEecCCCCCC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLS--KPTSGSINIRGYNNDGEPN--NSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~--~p~~G~i~~~g~~~~~~~~--~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
+...+.+.+ .+++|+|||||||||++.+|. .|- +..+... . .....-. ..........|...+++.....
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~--~--~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRG--S--KLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT---S--SGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccc--c--ccccccccccccccccccccccccccccccc
Confidence 567777764 599999999999999999993 222 1111110 0 0000000 0000111234666666553210
Q ss_pred ----CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEE
Q 035832 111 ----VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLL 182 (245)
Q Consensus 111 ----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~ll 182 (245)
....+...+... ................+.+.+..+.+.. ..||||||.+++||.-| ..+++++
T Consensus 91 ~~~~~~~~i~r~~~~~-~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ 162 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRK-GRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFL 162 (220)
T ss_dssp SSSSSEEEEEEEEETT-S-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEE
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccc
Confidence 000110000000 0000000000011133455565555542 28999999999999765 4577999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 183 llDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|||||.++||...+..+.++|+++.++.-+|++||+... ...+|+.+.+.
T Consensus 163 ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~-~~~a~~~~~v~ 212 (220)
T PF02463_consen 163 ILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEM-FEDADKLIGVT 212 (220)
T ss_dssp EEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHH-HTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 999999999999999999999999877889999999775 56788877653
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.73 E-value=4.9e-18 Score=165.77 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=93.9
Q ss_pred eeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCC-CCCCcce-EEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 37 GVSFSLPEK-SFGLIFGRSGSGKTTLLQLLAGL-SKPTSGS-INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 37 ~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |... ....++|..|..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~---------------~~~~~~~~d~i~------- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN---------------EHSEIPYFEEIF------- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC---------------ccccccchhhee-------
Confidence 378889887 99999999999999999999998 4454441 1110 001122222211
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
.. ++.... .....+++|+||++++.|++++ .+|+++|+|||++|+||
T Consensus 371 -------~~------------------------i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 371 -------AD------------------------IGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred -------ee------------------------cChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 00 000011 2334678999999999998887 89999999999999999
Q ss_pred HHHHHH-HHHHHHhhc-CceEEEEecChhHH
Q 035832 194 KARADV-VKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 194 ~~~~~i-~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
.....+ ..++..+.+ +.++|++||+.+..
T Consensus 418 ~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 418 DEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 999999 567777764 68999999998763
No 422
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.64 E-value=3.2e-16 Score=117.04 Aligned_cols=77 Identities=23% Similarity=0.151 Sum_probs=62.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++...... ...+.+++++|+ ++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~----~~~~~~~~~~q~----lf 67 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRED----SKDELIGRNPEL----GL 67 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhh----hcCCEEEEechh----cc
Confidence 36899999999999999999999999999999986 79999999987554322 234557777776 34
Q ss_pred cccHHHHHHhc
Q 035832 112 ADNVLDEVIFG 122 (245)
Q Consensus 112 ~~tv~e~l~~~ 122 (245)
..|+++||.+.
T Consensus 68 ~~ti~~Ni~~~ 78 (107)
T cd00820 68 EIRLRLNIFLI 78 (107)
T ss_pred hhhHHhhceee
Confidence 67999999874
No 423
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.64 E-value=8.9e-16 Score=146.06 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 159 HSLSGGYKRRLALAIQLVQV----PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
..|||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++.++.+||+|||++..+ .+||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~-~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVA-AHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHH-HhcCeEEEEEE
Confidence 36899999999999999986 69999999999999999999999999998779999999999877 58999999987
Q ss_pred Ce
Q 035832 235 GG 236 (245)
Q Consensus 235 G~ 236 (245)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 53
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=2e-15 Score=127.46 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=89.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
..+.+|++|.+++|++++|+||||+||||+++++++ .+.++.|...+.. ..+++|..|- +
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~---------------~~~~~~~~~i----~ 78 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS---------------SATLSIFDSV----L 78 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC---------------ceEEeccceE----E
Confidence 357899999999999999999999999999999999 6778888876531 1123332221 1
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+...|++.-+ -++++ .|-+++.-+...+.+|+++|+|||++|
T Consensus 79 ~~~~~~d~~~~~-----------------------------------~StF~-~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 79 TRMGASDSIQHG-----------------------------------MSTFM-VELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred EEecCccccccc-----------------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 111111111110 00111 122223222334568999999999999
Q ss_pred CCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHH
Q 035832 191 LDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 191 LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~ 223 (245)
.|+.....+ +.+++.+.+ +.++|++||+.+...
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 987766664 566666653 579999999998754
No 425
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.63 E-value=2.8e-16 Score=153.87 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
..+..+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ +.++|++||+.+.....+++..+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3566789999999999999998 8999999999999999999988865 5666654 68999999999887766666555
Q ss_pred EeCCeEEE
Q 035832 232 MDMGGFLV 239 (245)
Q Consensus 232 l~~G~i~~ 239 (245)
+ ++.+..
T Consensus 463 ~-~~~~~~ 469 (782)
T PRK00409 463 E-NASVEF 469 (782)
T ss_pred E-EEEEEE
Confidence 4 345544
No 426
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.5e-15 Score=153.59 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
.++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+.. +.+|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 477899999999999999999986 7999999999999999999999999999864 68999999999999
Q ss_pred HhhccEEEEEeCC
Q 035832 223 AALVDHSWRMDMG 235 (245)
Q Consensus 223 ~~~~d~v~~l~~G 235 (245)
..+||+|.+++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.62 E-value=4.4e-16 Score=139.34 Aligned_cols=173 Identities=30% Similarity=0.378 Sum_probs=120.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEE----ecCCCCCCCcccHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIV----FQFPERYFVADNVLDE 118 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v----~Q~~~~~~~~~tv~e~ 118 (245)
.+|++.+++|.||-||||-+++++|-++|.-|.... +. .|..-++|- .|+ +| .--+.+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~--------pp-----~w~~il~~frgselq~---yf-tk~le~~ 160 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN--------PP-----DWQEILTYFRGSELQN---YF-TKILEDN 160 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC--------Cc-----chHHHhhhhhhHHHhh---hh-hhhcccc
Confidence 489999999999999999999999999997664311 00 011112211 011 00 0011112
Q ss_pred HHhcC--------CCCC----CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 035832 119 VIFGW--------PRQS----GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 119 l~~~~--------~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDE 186 (245)
+.... ++.. +........+....++++.+.|... +++.+.+|||||-||.+||.+.+.+.++.++||
T Consensus 161 lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~-~~re~~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 161 LKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNL-LDREVEQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred ccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhH-HHhhhhhcccchhhhhhhhhhhhhhcceeEecC
Confidence 11100 0000 0000111122345667777888875 699999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 187 PLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|.+.||...+..-...|+.+.. ..=||+|.||+..+..+.|-+..+.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999999999999999999865 5789999999998887888888875
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=3.6e-16 Score=131.09 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhh
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPL-----AGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~ 207 (245)
-|++++.|||+++.+|+++++|||| ++||+..++.+.+++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999985
No 429
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.62 E-value=1.1e-14 Score=133.78 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=114.0
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC---C-CCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP---N-NSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~-~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.... . ......+++.+.++.+-..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4589999 999999999999999999999999999999999999999665432111 0 0111224567888876432
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeC
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG-GYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqrv~iAral~~~p~llllDE 186 (245)
.. .+-+.- ......+.+.+..-|.+=.. -..+|+- -|.+| .|+ +.+.|
T Consensus 225 ~~------~~r~~~------------~~~a~~iAEyfr~~g~~Vll---~~Dsltr~A~A~r-Eis---------l~~ge 273 (438)
T PRK07721 225 PA------LMRIKG------------AYTATAIAEYFRDQGLNVML---MMDSVTRVAMAQR-EIG---------LAVGE 273 (438)
T ss_pred CH------HHHHHH------------HHHHHHHHHHHHHCCCcEEE---EEeChHHHHHHHH-HHH---------HhcCC
Confidence 11 111100 01111222233222322110 1122221 11111 011 12345
Q ss_pred C--CCCCCHHHHHHHHHHHHHhh---cCc-----eEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 187 P--LAGLDWKARADVVKLLKHLK---KEL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 187 P--ts~LD~~~~~~i~~~l~~l~---~~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
| |+|+||.....+.++++++. ++. ||++.+||+++ .+||++..|.+|+++.+..
T Consensus 274 ~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 274 PPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEecc
Confidence 4 78999999999999999986 243 99999999985 7999999999999998754
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.60 E-value=1.8e-15 Score=143.85 Aligned_cols=80 Identities=31% Similarity=0.466 Sum_probs=71.1
Q ss_pred CCCCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 156 KDPHSLSGGYKRRLALAIQLV----------QVPDLLILDEPL-AGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
.++.+|||||+||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ ++.+||+|||+.+.. .
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~-~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDP-Q 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhch-h
Confidence 356899999999999999988 599999999998 789999999999999998 678999999997654 6
Q ss_pred hccEEEEEeC-CeE
Q 035832 225 LVDHSWRMDM-GGF 237 (245)
Q Consensus 225 ~~d~v~~l~~-G~i 237 (245)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7899999986 544
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.60 E-value=4.5e-15 Score=140.62 Aligned_cols=75 Identities=29% Similarity=0.334 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCC
Q 035832 160 SLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
.|||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++.++.+||+|||++..+ .+||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999997 689999999999999999999999999997778999999999865 799999999874
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.57 E-value=2.2e-14 Score=123.08 Aligned_cols=76 Identities=26% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCChHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhh-cCceEEEEecChhHHHhhcc
Q 035832 158 PHSLSGGY--------KRRLALAIQLVQVPDLLILDEPLAGLDWKARAD-VVKLLKHLK-KELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 158 ~~~LSgGq--------kqrv~iAral~~~p~llllDEPts~LD~~~~~~-i~~~l~~l~-~~~tiii~tHd~~~~~~~~d 227 (245)
...+|||+ +||+++||++..+++|.+| ||+.+|..+... ++ +.++. ...|.|++||++... ...|
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~-~~~p 201 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAER-RIFP 201 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhC-CCCC
Confidence 34479999 9999999999999999999 999999644433 44 45554 357999999999875 5779
Q ss_pred EEEEEeCCeEE
Q 035832 228 HSWRMDMGGFL 238 (245)
Q Consensus 228 ~v~~l~~G~i~ 238 (245)
.|.+|+.|.+.
T Consensus 202 aI~vl~s~sr~ 212 (249)
T cd01128 202 AIDILKSGTRK 212 (249)
T ss_pred eEEEcCCCCcc
Confidence 99999999875
No 433
>PRK13695 putative NTPase; Provisional
Probab=99.55 E-value=3.3e-15 Score=121.46 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=63.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDE--PLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
.++...+|++++-++.+++..+.+|+++++|| |+.++|+.. .+.+.++. .+.++|+++|+. .+..++|++..
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~ 147 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHRR-SVHPFVQEIKS 147 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECch-hhHHHHHHHhc
Confidence 44566799999999999999999999999999 555555444 44444443 468999999995 45678999999
Q ss_pred EeCCeEEE
Q 035832 232 MDMGGFLV 239 (245)
Q Consensus 232 l~~G~i~~ 239 (245)
+.+|+++.
T Consensus 148 ~~~~~i~~ 155 (174)
T PRK13695 148 RPGGRVYE 155 (174)
T ss_pred cCCcEEEE
Confidence 99998865
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.53 E-value=8.8e-14 Score=118.22 Aligned_cols=158 Identities=21% Similarity=0.284 Sum_probs=94.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTL-LQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+.++++.+.+++ -+++|++++|.|||||||||| +++++++.++...
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~---------------------- 54 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS---------------------- 54 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc----------------------
Confidence 556666666643 268999999999999999999 6999988654222
Q ss_pred CcEEEEecCCCCCCCcccHHHHH-HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.|+..+.. .....++. .+++. +++....=.+. . .+-.+ .+|+++.++..+++.+
T Consensus 55 --~~yi~~e~~----~~~~~~~~~~~g~~---------------~~~~~~~~~l~-~-~~~~~-~~~~~~~~~~~l~~il 110 (230)
T PRK08533 55 --VSYVSTQLT----TTEFIKQMMSLGYD---------------INKKLISGKLL-Y-IPVYP-LLSGNSEKRKFLKKLM 110 (230)
T ss_pred --EEEEeCCCC----HHHHHHHHHHhCCc---------------hHHHhhcCcEE-E-EEecc-cccChHHHHHHHHHHH
Confidence 233332110 11112222 12210 00011100110 1 12222 3677766666665554
Q ss_pred hh----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhc-CceEEEEecChhH--------HHhhccEEEEEe
Q 035832 176 VQ----VPDLLILDEPLAGL----DWKARADVVKLLKHLKK-ELTILVVSHDLKE--------MAALVDHSWRMD 233 (245)
Q Consensus 176 ~~----~p~llllDEPts~L----D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~--------~~~~~d~v~~l~ 233 (245)
-. +|+++++||||+++ |+..+++++++++.+++ +.|+ ++||+... +..+||-|+.|+
T Consensus 111 ~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 111 NTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 43 69999999999999 88888999999998865 5655 44666443 244567777776
No 435
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=2.8e-13 Score=114.15 Aligned_cols=140 Identities=19% Similarity=0.145 Sum_probs=89.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
..+-+|++|+.++|++++|+||||+||||+++++++..-.. .|... +. ...+++++.+ .|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v---------pa------~~~~i~~~~~----i~ 77 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV---------PA------KSMRLSLVDR----IF 77 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc---------Cc------cccEeccccE----EE
Confidence 35789999999999999999999999999999998874321 12110 00 0112222111 11
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+...|++..+. ++++ .|-+++.-....+.+|+++|+|||++|
T Consensus 78 ~~~~~~d~~~~~~-----------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 78 TRIGARDDIMKGE-----------------------------------STFM-VELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred EecCcccccccCc-----------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 1111222222110 0111 122333333333567999999999999
Q ss_pred CCHHHHHHHHHH-HHHhhc--CceEEEEecChhHHHhhc
Q 035832 191 LDWKARADVVKL-LKHLKK--ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 191 LD~~~~~~i~~~-l~~l~~--~~tiii~tHd~~~~~~~~ 226 (245)
+|+.....+... ++.+.+ +.++|++||+++.+..++
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 999999888887 666654 689999999999887765
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.52 E-value=7.4e-14 Score=116.98 Aligned_cols=66 Identities=30% Similarity=0.440 Sum_probs=55.0
Q ss_pred CCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 157 DPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
+...+|.|++|.+.|+.++...+ .++++|||-++|+|..++.++++|....+ +..||++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35567999999999998888777 89999999999999999999999988876 68999999998653
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.52 E-value=4e-14 Score=141.13 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=69.4
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+.. +.+||+||||.+. ..+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678999999999 55666788899999999999999999999999999998764 4799999999875 57899
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999998
No 438
>PRK01156 chromosome segregation protein; Provisional
Probab=99.51 E-value=1.4e-13 Score=137.53 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hc--C-ceEEEEecChhHHHhh
Q 035832 156 KDPHSLSGGYKRRLAL------AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-KK--E-LTILVVSHDLKEMAAL 225 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~i------Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~~--~-~tiii~tHd~~~~~~~ 225 (245)
.++..|||||++|++| |++++.+|++++|||||++||+..+..+.++|... .. + .+||++|||.+.+ ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999975 59999999999999999999999999999999864 33 2 4899999999976 68
Q ss_pred ccEEEEEe
Q 035832 226 VDHSWRMD 233 (245)
Q Consensus 226 ~d~v~~l~ 233 (245)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 439
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.51 E-value=7.7e-14 Score=141.03 Aligned_cols=80 Identities=28% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQ--------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL 225 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~ 225 (245)
++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.. +.+|+||||..+...++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 57899999999999999999996 8999999999999999999999999999974 68999999999998888
Q ss_pred ccEEEEEeC
Q 035832 226 VDHSWRMDM 234 (245)
Q Consensus 226 ~d~v~~l~~ 234 (245)
..++.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 888888875
No 440
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=8.4e-14 Score=143.73 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=67.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh------cCceEEEEecChhHHH
Q 035832 156 KDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK------KELTILVVSHDLKEMA 223 (245)
Q Consensus 156 ~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~------~~~tiii~tHd~~~~~ 223 (245)
..++.||||||| |++||||++.+|++|+|||||++||+.+...+.+.|..+. .+.+||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 355799999999 9999999999999999999999999999999999988762 2479999999999998
Q ss_pred hhc-----cEEEEEe
Q 035832 224 ALV-----DHSWRMD 233 (245)
Q Consensus 224 ~~~-----d~v~~l~ 233 (245)
.+| +++|-+.
T Consensus 1275 ~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1275 LLGRSEYVEKFYRLK 1289 (1311)
T ss_pred HHhhccccceeeeee
Confidence 875 5555453
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.49 E-value=2.2e-13 Score=111.25 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=71.0
Q ss_pred cCCCCccCCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhc-CceEEEEe
Q 035832 147 VGLDGTSLDKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLD---WKARADVVKLLKHLKK-ELTILVVS 216 (245)
Q Consensus 147 ~~l~~~~~~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~-~~tiii~t 216 (245)
.|.... .+..+..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+++ +.|+|+++
T Consensus 59 ~g~l~~-~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 59 EGLLAI-VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS 137 (187)
T ss_pred cCCeEE-EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 344333 57888999999998 5556666778999999999999999 8888888888888864 68999999
Q ss_pred cChhH---------HHhhccEEEEEe
Q 035832 217 HDLKE---------MAALVDHSWRMD 233 (245)
Q Consensus 217 Hd~~~---------~~~~~d~v~~l~ 233 (245)
|+... +..+||.++.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 138 EQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccccCCCcccCcCceeEeeeEEEEEE
Confidence 98764 678899999987
No 442
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.47 E-value=9.1e-14 Score=141.52 Aligned_cols=79 Identities=29% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
.+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+.++.+||||||+++.+ .+||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence 35788999999999999999985 6779999999999999999999999999987668899999999875 679998
Q ss_pred EEEe
Q 035832 230 WRMD 233 (245)
Q Consensus 230 ~~l~ 233 (245)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7654
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.44 E-value=5.8e-13 Score=121.87 Aligned_cols=165 Identities=20% Similarity=0.147 Sum_probs=115.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++-+.++..|..+ ..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer-------------- 193 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER-------------- 193 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC--------------
Confidence 46777888777643 4588885 9999999999999999999999999999999988877654421
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
. .++.+.+..- +..-++.....=....+.|.|+|+|++.+.+.+
T Consensus 194 ---------g------~ev~e~~~~~---------------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~i 237 (432)
T PRK06793 194 ---------G------REVKDFIRKE---------------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSI 237 (432)
T ss_pred ---------c------ccHHHHHHHH---------------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 0 1222222110 000011110011245678999999999999988
Q ss_pred -------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 -------QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 -------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.++-++++|+||...|+. +++...+.+.. .+.+..+.||-. ++++|......|.|..
T Consensus 238 AEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~----~L~ERag~~~~GSiT~ 302 (432)
T PRK06793 238 AEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK----KLLERSGKTQKGSITG 302 (432)
T ss_pred HHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch----hHHHHhccCCCcceEE
Confidence 899999999999999996 56666666664 357778888843 3444544456777754
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.41 E-value=8.7e-12 Score=101.11 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
.+..+..|-||-=.-.+.+.+ ...-++|||||-++|.|.-+.+++..|+++.+ +..+||+||.+-++.--..+++.++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 445667899998776666665 45689999999999999999999999999975 5899999999876554457888888
Q ss_pred CCeE
Q 035832 234 MGGF 237 (245)
Q Consensus 234 ~G~i 237 (245)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7764
No 445
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.39 E-value=8.9e-13 Score=134.49 Aligned_cols=79 Identities=24% Similarity=0.202 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
.+++..||||||++++||++|+. +|+++|||||+++||+..+..+.++|..+..+.++|++||+... ..+||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~-~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPM-IEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHH-HHhcceeE
Confidence 45678999999999999999985 78999999999999999999999999998766889999999875 47999998
Q ss_pred EEeC
Q 035832 231 RMDM 234 (245)
Q Consensus 231 ~l~~ 234 (245)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7754
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.39 E-value=7.6e-14 Score=127.94 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=55.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+|++|||++++||+++|+|||||||||||| +|+..|++| +|.++|+++...+.... ..+-+|||+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-----~~LR~VFQ~fn 88 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-----ETLDEIFDGFN 88 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-----HHHHHHHHhhh
Confidence 5899999999999999999999999999999 788888888 79999999865332211 11228888753
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.38 E-value=1.6e-12 Score=115.16 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=90.5
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHH
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLD 117 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e 117 (245)
+++.+..|+.++|+||+|||||||+++|++++++..|.+.+.. ...... ..+..+++..+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~-----~~~~~~~l~~~~~~---------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFL-----PHPNYVHLFYSKGG---------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCC-----CCCCEEEEEecCCC----------
Confidence 4577889999999999999999999999999999888888742 111100 00122222222100
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 035832 118 EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197 (245)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~ 197 (245)
......| ..-.++.+|-++|+++++|||.+ .
T Consensus 200 --------------------------------------~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 200 --------------------------------------QGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred --------------------------------------CCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0000011 11245667888999999999996 3
Q ss_pred HHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 198 DVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 198 ~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+++++++.+..+ .+++.++|..+ +....+|+..|..|++..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~ 272 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS-PEEAFEQLALMVKSSQAG 272 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC-HHHHHHHHHHHhhccccc
Confidence 566777777666 46799999988 455689988887766543
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.36 E-value=1.1e-11 Score=122.47 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=57.2
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhc-CceEEEEecChhHHH---------hhccEEEEEeCCeEEE
Q 035832 176 VQVPDLLILDEPLAGL-DWKARADVVKLLKHLKK-ELTILVVSHDLKEMA---------ALVDHSWRMDMGGFLV 239 (245)
Q Consensus 176 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~---------~~~d~v~~l~~G~i~~ 239 (245)
..+|+++++|||+.+| |+..++.+.+.++.+++ +.+++++||+++.+. ..|+++++|.+|++..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 5799999999999999 79999999999999864 689999999999876 5799999999988743
No 449
>PRK00064 recF recombination protein F; Reviewed
Probab=99.36 E-value=2.3e-12 Score=116.46 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=68.9
Q ss_pred CCCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhc-
Q 035832 157 DPHSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALV- 226 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~- 226 (245)
....+|.||+|+++||++|+ .+|+++|||||+++||+..++.+++.+.++ +..++++||+.+.+...+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhc
Confidence 34689999999999999996 799999999999999999999999998764 357999999988776664
Q ss_pred -cEEEEEeCCeE
Q 035832 227 -DHSWRMDMGGF 237 (245)
Q Consensus 227 -d~v~~l~~G~i 237 (245)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
No 450
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.4e-11 Score=117.98 Aligned_cols=99 Identities=31% Similarity=0.434 Sum_probs=85.8
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.|-.+||..+-++|...+|||||.||+.||..+-.+= =+++||||+.||-+.-.+++++.|++++. +-|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 4555799887789999999999999999999996654 58899999999999999999999999986 68999999998
Q ss_pred hHHHhhccEEEEE------eCCeEEEecc
Q 035832 220 KEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 220 ~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+.+ ..||+++-| +.|+|++++.
T Consensus 544 dti-~~AD~iIDiGPgAG~~GGeIv~~Gt 571 (935)
T COG0178 544 DTI-RAADHIIDIGPGAGEHGGEIVAEGT 571 (935)
T ss_pred HHH-hhcCEEEeeCCCCCcCCCEEEEccC
Confidence 865 679999988 4567777654
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.31 E-value=5e-12 Score=99.91 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLA----------GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
...+.++.++++.+++...+|+++++|||++ +.|....+.+.+++...++ +.|+|+++|.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3445666678889999999999999999994 4555656777777666654 58999999977543
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=99.29 E-value=7.6e-12 Score=124.93 Aligned_cols=78 Identities=35% Similarity=0.471 Sum_probs=68.1
Q ss_pred CCCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHH
Q 035832 157 DPHSLSGGYKR------RLALAIQLVQV-----P-DLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEM 222 (245)
Q Consensus 157 ~~~~LSgGqkq------rv~iAral~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~ 222 (245)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|..+.. + .+||+||||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999999864 3 67999999999999999999999999864 4 4899999999887
Q ss_pred HhhccEEEEEeCC
Q 035832 223 AALVDHSWRMDMG 235 (245)
Q Consensus 223 ~~~~d~v~~l~~G 235 (245)
..||+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 479999999743
No 453
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.18 E-value=2.4e-11 Score=111.57 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=70.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC---ccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~~~~~~~~~~~ 91 (245)
.+.++.+++++.|..+ ..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.| .++........
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 3468999999999654 56899996 9999999999999999999999999999999999998864 44322111111
Q ss_pred CCCCCCcEEEEecCCC
Q 035832 92 EPLPPEKVGIVFQFPE 107 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~ 107 (245)
...+++.|+|++|...
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 1234568999999753
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.17 E-value=4e-10 Score=95.79 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHhhc-CceEEEEecChhH-------HHhh
Q 035832 159 HSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAG---LDWKARADVVKLLKHLKK-ELTILVVSHDLKE-------MAAL 225 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~--~p~llllDEPts~---LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~-------~~~~ 225 (245)
...|.++++.+..++.++. +|+++++||||+. .|......+++.++.+++ +.|+++++|+... +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457789999999999987 9999999999964 455555566555666543 5899999997654 4567
Q ss_pred ccEEEEEe
Q 035832 226 VDHSWRMD 233 (245)
Q Consensus 226 ~d~v~~l~ 233 (245)
+|-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 78888776
No 455
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1e-10 Score=105.77 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHH
Q 035832 159 HSLSGGYKRRLALAIQLVQ---------VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMA 223 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~ 223 (245)
..+|.||+|+++||.+|+. +|++||||||+++||+..++.+++.|... +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999764 568999999987654
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.13 E-value=3.3e-10 Score=96.65 Aligned_cols=135 Identities=24% Similarity=0.276 Sum_probs=80.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|.+..|+||.|+|||||.-.++=-. ..|.=++.+ . ... ....++-|+.-+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~-~---~~~-----~~~~~Vlyi~~Ed~----------------- 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGG-G---LKV-----TEPGRVVYLSAEDP----------------- 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCC-c---ccc-----CCCceEEEEECCCC-----------------
Confidence 6788999999999999997775321 233222211 0 000 00223444332210
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCC
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI----------------QLVQVPDLLILDEPL 188 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr----------------al~~~p~llllDEPt 188 (245)
......++..+...+++.+. .++... .+|+.|++.+++ +...+|+++++| |+
T Consensus 53 --------~~~i~~Rl~~i~~~~~~~~~-~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl 120 (239)
T cd01125 53 --------REEIHRRLEAILQHLEPDDA-GDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PL 120 (239)
T ss_pred --------HHHHHHHHHHHHhhcCCcCc-ccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-Ch
Confidence 11223344455555554332 122221 245666655544 446899999999 77
Q ss_pred CC------CCHHHHHHHHHHHHHhhc--CceEEEEecCh
Q 035832 189 AG------LDWKARADVVKLLKHLKK--ELTILVVSHDL 219 (245)
Q Consensus 189 s~------LD~~~~~~i~~~l~~l~~--~~tiii~tHd~ 219 (245)
++ +|+.....+++.|.++.+ +++||+++|..
T Consensus 121 ~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 121 VSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 64 799999999999998863 58999999976
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.12 E-value=3.4e-10 Score=94.05 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+++++|..+|+++++|||. |++....+ ++....+..++.++|..+.. ...+|++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G~~v~~t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETGHLVMSTLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence 4889999999999999996 66654333 33334578899999998754 4567876653
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.06 E-value=3.6e-10 Score=105.04 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
++++.++.+++|.+++++||||+||||++..|++.+.+..|. .+|+++.+++. ..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~---------------------~kV~LI~~Dt~----Ri 299 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA---------------------SKVALLTTDSY----RI 299 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC---------------------CeEEEEeCCcc----ch
Confidence 566777888899999999999999999999999876554441 25889998862 45
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR-RLALAIQLVQVP-----DLLILDEP 187 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq-rv~iAral~~~p-----~llllDEP 187 (245)
++.|++.+.......... ......+......++.+. ....+.+...+++- .+.-+.+++.++ .+|+||.+
T Consensus 300 gA~EQLr~~AeilGVpv~---~~~~~~Dl~~aL~~L~d~-d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt 375 (484)
T PRK06995 300 GGHEQLRIYGKILGVPVH---AVKDAADLRLALSELRNK-HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT 375 (484)
T ss_pred hHHHHHHHHHHHhCCCee---ccCCchhHHHHHHhccCC-CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC
Confidence 788888753111000000 000111223344556543 34556665444432 233444444444 68999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CceEEEEecC---------hhHHHhhccEEEEEeCCeEE
Q 035832 188 LAGLDWKARADVVKLLKHLKK-ELTILVVSHD---------LKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd---------~~~~~~~~d~v~~l~~G~i~ 238 (245)
+.+ ..+.+.++.++. +.+=+|.|+= ++.+....=-+.++..|+-|
T Consensus 376 ~~~------~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 376 SHG------DTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred CcH------HHHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 887 334444555443 3444455652 12222333346777777655
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=8.3e-09 Score=78.42 Aligned_cols=117 Identities=35% Similarity=0.356 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
++..+.|+||+|+||||+++.|+..+.... +-+.++... .... ...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~--------------------------~~~~-~~~------ 47 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED--------------------------ILEE-VLD------ 47 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE--------------------------cccc-CHH------
Confidence 467899999999999999999999887543 223322110 0000 000
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 035832 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202 (245)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 202 (245)
... .. .........++++..+..+++|-...|.++++||+..-.+..........
T Consensus 48 ----------~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~ 102 (148)
T smart00382 48 ----------QLL--------------LI-IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLL 102 (148)
T ss_pred ----------HHH--------------hh-hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhh
Confidence 000 00 11233446778888888888888888999999999999999988776641
Q ss_pred ------HHHhh-cCceEEEEecC
Q 035832 203 ------LKHLK-KELTILVVSHD 218 (245)
Q Consensus 203 ------l~~l~-~~~tiii~tHd 218 (245)
..... ....+|+++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 103 EELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hhhHHHHHHHhcCCCEEEEEeCC
Confidence 22222 34788888883
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.05 E-value=4e-10 Score=92.60 Aligned_cols=82 Identities=23% Similarity=0.131 Sum_probs=58.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC-CCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER-YFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~-~~~~ 112 (245)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++++|.+.. ....
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~-------~~~~~~~~~~~~~~~~~~~~ 86 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL-------PHPNWVRLVTRPGNVEGSGE 86 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC-------CCCCEEEEEEecCCCCCCCc
Confidence 34556678899999999999999999999999999999999999965321111 113457777766432 2334
Q ss_pred ccHHHHHHhc
Q 035832 113 DNVLDEVIFG 122 (245)
Q Consensus 113 ~tv~e~l~~~ 122 (245)
.+..+.+...
T Consensus 87 ~~~~~~l~~~ 96 (186)
T cd01130 87 VTMADLLRSA 96 (186)
T ss_pred cCHHHHHHHH
Confidence 5677766543
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.04 E-value=9.8e-10 Score=101.38 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=107.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC---CCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE---PNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+++.|.+...|+.-... ..........++..++....+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 5689999 99999999999999999999999999999999988777765432110 000001111223333333221
Q ss_pred CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG-GYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqrv~iAral~~~p~llllDEP 187 (245)
. +..+-.. .......+.+.+...|-+-.. -..+|+- -|.+| .++ +.+.||
T Consensus 229 ~----~p~~r~~------------~~~~a~t~AE~frd~G~~Vll---~~DslTr~A~A~R-Eis---------l~~ge~ 279 (440)
T TIGR01026 229 Q----SPLLRLK------------GAYVATAIAEYFRDQGKDVLL---LMDSVTRFAMAQR-EIG---------LAAGEP 279 (440)
T ss_pred C----CHHHHHH------------HHHHHHHHHHHHHHCCCCEEE---EEeChHHHHHHHH-HHH---------HhcCCC
Confidence 1 1111110 001111222223223432111 1223331 12222 122 345675
Q ss_pred --CCCCCHHHHHHHHHHHHHhhc-Cc-------eEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 188 --LAGLDWKARADVVKLLKHLKK-EL-------TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 188 --ts~LD~~~~~~i~~~l~~l~~-~~-------tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.|+||.....+.+++.+... +. ||++.+||+. ..+||++..+.+|+++.+..
T Consensus 280 P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 280 PATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred CcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecc
Confidence 569999999999999999753 34 8888999985 56899999999999987643
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=99.04 E-value=5.2e-09 Score=104.17 Aligned_cols=54 Identities=30% Similarity=0.386 Sum_probs=48.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhc-CceEEEEecChhHHHh
Q 035832 171 LAIQLVQVPDLLILDEPLAGL-DWKARADVVKLLKHLKK-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 171 iAral~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~ 224 (245)
|++++..+|+++++|||+.+| |+..++.+.+.++.+++ +.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 79999999999999864 6899999999998865
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.04 E-value=1.7e-12 Score=121.50 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=97.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLL--AGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
=+.+|..+.|.||+|||||||.... .|+.++.+..+++....- ..... ...+.+||-+++... . ++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~----~~~l~-~~~~~~G~~~~~~~~---~----g~ 84 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES----PQDII-KNARSFGWDLQKLVD---E----GK 84 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----HHHHH-HHHHHcCCCHHHHhh---c----Cc
Confidence 4789999999999999999999865 466554445555543210 00000 001234443332210 0 00
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA--IQLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA--ral~~~p~llllDEPts~LD~~~~ 196 (245)
+.+- .. ... .....+++.+++.+. +++.+..+|+|++|||.|+ .+|...|+.. +..+
T Consensus 85 l~~~-~~-----~~~----~~~~~~~~~~~l~~~-l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 85 LFIL-DA-----SPD----PEGQDVVGGFDLSAL-IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred eEEE-ec-----Cch----hccccccccCCHHHH-HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 0000 00 000 001112344555544 5777889999999999999 5666665544 5678
Q ss_pred HHHHHHHHHhhc-CceEEEEecChhH---------HHhhccEEEEEe
Q 035832 197 ADVVKLLKHLKK-ELTILVVSHDLKE---------MAALVDHSWRMD 233 (245)
Q Consensus 197 ~~i~~~l~~l~~-~~tiii~tHd~~~---------~~~~~d~v~~l~ 233 (245)
+.++++++.+++ ++|+|++||+.+. ...+||.|+.|+
T Consensus 144 ~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 889999988865 6999999998764 256789999886
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.03 E-value=2e-10 Score=95.09 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=67.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
+++|.||||||||||.++|++++ ..|.+.+.+.|....... ........++.++. +.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~--~~~~~~~~~~~~~~------------------~~- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLS--HEELEERKNNNYDH------------------PD- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccc--cccHHHhccCCCCC------------------CC-
Confidence 58999999999999999999998 344454433321100000 00000000000110 00
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
.. ..+...+.+..+..... .+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++..
T Consensus 58 --~~-----~~~~~~~~l~~l~~~~~-~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 58 --AF-----DFDLLISHLQDLKNGKS-VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred --cc-----cHHHHHHHHHHHHCCCC-EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 00 01123344555555443 577888999999877655 578899999999999998643
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=99.00 E-value=1.1e-09 Score=98.64 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 159 HSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|.... .++|-+|+ ....|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence 468999999999999999 8999999999999999999999998886542 23333333 24678999
Q ss_pred EEEeCCeEEEe
Q 035832 230 WRMDMGGFLVE 240 (245)
Q Consensus 230 ~~l~~G~i~~~ 240 (245)
+.+++|++..+
T Consensus 336 ~~~~~~~~~~~ 346 (349)
T PRK14079 336 LRIEAGVFTPE 346 (349)
T ss_pred EEEeccEecCC
Confidence 99999887654
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.4e-09 Score=107.43 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCCCChHHHHHHHHHHHH------hhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 156 KDPHSLSGGYKRRLALAIQL------VQV--PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral------~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
+++.+|||||+-.++||.+| ..+ -++++|||||..||+.+.+.+++.|..+.. +.+|+||||+.++. ..+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~-e~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELK-ERA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH-HhC
Confidence 68899999999988887776 345 699999999999999999999999999976 48999999998764 678
Q ss_pred cEEEEEeC
Q 035832 227 DHSWRMDM 234 (245)
Q Consensus 227 d~v~~l~~ 234 (245)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 88888864
No 467
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.96 E-value=1.1e-09 Score=113.34 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=55.8
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecCh
Q 035832 155 DKDPHSLSGGYKRRLA----LAIQ--------LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~----iAra--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~ 219 (245)
++.++.|||||||+++ +|++ +..+|++++|||||+|||+.++..++++|.++ +.++||+||.+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 4567899999999996 5755 55899999999999999999999999999888 57899999985
No 468
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.95 E-value=4.8e-10 Score=103.11 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=99.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcC---ccCCCCCCCCCCCCCCCcEEEE-----
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRG---YNNDGEPNNSPEPLPPEKVGIV----- 102 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g---~~~~~~~~~~~~~~~~~~i~~v----- 102 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.| .++.......... ...+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~-~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGE-EGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHh-cCCceEEEEEeCC
Confidence 4588988 99999999999999999999999999999854 446666644 4442211110111 12335555
Q ss_pred ecCCCCCCC----cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCChHHHHHHHHHHH
Q 035832 103 FQFPERYFV----ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 103 ~Q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+|+|...+. ..++.|.+... ............++.++++.+++. ......+|+.||. +++-
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~----g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~l 298 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQ----GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKL 298 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHc----CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHH
Confidence 888743322 22344444321 011001123345677888888883 2235777777763 2221
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-----ceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-----LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-----~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+=.--+ ...+ .||++..+|+++ .++|.+..+-||+++.+
T Consensus 299 lERag~-------------------------~~~GSITai~tVl~~gdD~~d--pi~d~~~~i~dg~ivLs 342 (442)
T PRK06315 299 LERSGA-------------------------SDKGTITAFYTVLVAGDDMNE--PVADEVKSILDGHIVLS 342 (442)
T ss_pred HHHhcC-------------------------CCCcceeeeEEEEecCCCCCc--ccHHHhhhhcceEEEEe
Confidence 100000 0122 367777778764 47788888888888764
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.95 E-value=6e-09 Score=103.62 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=85.9
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.+=+|++|. +.+.++.|.|||.+||||+||.++-+. -.+-|. |||-...
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-------------------------~VPa~~a---- 645 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-------------------------FVPAESA---- 645 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-------------------------ceeccce----
Confidence 456788887 678899999999999999999986442 112221 2221110
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEP-- 187 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~--~p~llllDEP-- 187 (245)
...+.+.+ +.++|-. |.-...+|-=+.....++.+|-. ++.++|+|||
T Consensus 646 ~i~~~d~I------------------------~triga~----d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~Gr 697 (854)
T PRK05399 646 RIGIVDRI------------------------FTRIGAS----DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGR 697 (854)
T ss_pred EecccCee------------------------eeccCcc----cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 00011111 0111211 22344577777777777777755 9999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccE
Q 035832 188 -LAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 188 -ts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~ 228 (245)
|+.+|..+ ..+.+++.+.+ +.++|++||..+ +..++++
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 99999443 45666666653 378999999954 5567665
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.90 E-value=1.8e-09 Score=99.13 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=62.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE---EEcCccCCCCCCC--CCCCCCCCcEEEEecCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI---NIRGYNNDGEPNN--SPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i---~~~g~~~~~~~~~--~~~~~~~~~i~~v~Q~~ 106 (245)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+ -.++.++...... ......+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999999886433 3333333211000 00112245799999997
Q ss_pred CCCCCcccHHHHHHh
Q 035832 107 ERYFVADNVLDEVIF 121 (245)
Q Consensus 107 ~~~~~~~tv~e~l~~ 121 (245)
. .+..+++.++..+
T Consensus 222 s-~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 S-PLMRIKATELCHA 235 (434)
T ss_pred C-hhhhHHHHHHHHH
Confidence 4 5556777777654
No 471
>PRK08149 ATP synthase SpaL; Validated
Probab=98.84 E-value=2.9e-09 Score=97.61 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=60.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+++++ |++.+||+++|+|+||+|||||+++|++...++. |.|...|.++.............+++++|+...+
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 4699999 9999999999999999999999999999999887 8888888876432221222233578999988753
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.79 E-value=2.8e-08 Score=102.05 Aligned_cols=44 Identities=27% Similarity=0.257 Sum_probs=36.3
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRG 80 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g 80 (245)
-+++..+.+++++|+|++|+|||||++.+++.+ ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 356778899999999999999999999995544 45588888864
No 473
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.77 E-value=3e-08 Score=95.49 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcce--------EEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccH
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS--------INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNV 115 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--------i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv 115 (245)
..+.++|+||||+|||||++++.++.++..|+ +.+++..+. + ....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-------------------------~-d~~~ 227 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-------------------------W-DPRE 227 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-------------------------C-CHHH
Confidence 45679999999999999999999988665443 333322110 0 0000
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 116 LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
..+..++.. .........+.++.+|+... ....+.++||| +|+||| +..||+..
T Consensus 228 i~~~llg~~--------~~~~~~~a~~~l~~~gl~~~-~~g~v~~asgG----------------vL~LDE-i~~Ld~~~ 281 (615)
T TIGR02903 228 VTNPLLGSV--------HDPIYQGARRDLAETGVPEP-KTGLVTDAHGG----------------VLFIDE-IGELDPLL 281 (615)
T ss_pred HhHHhcCCc--------cHHHHHHHHHHHHHcCCCch-hcCchhhcCCC----------------eEEEec-cccCCHHH
Confidence 112222210 01111234455778898765 57889999999 999999 79999999
Q ss_pred HHHHHHHHHH
Q 035832 196 RADVVKLLKH 205 (245)
Q Consensus 196 ~~~i~~~l~~ 205 (245)
+..+++.|++
T Consensus 282 Q~~Ll~~Le~ 291 (615)
T TIGR02903 282 QNKLLKVLED 291 (615)
T ss_pred HHHHHHHHhh
Confidence 9999999975
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.77 E-value=3.2e-09 Score=86.61 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.... ..++...|+.+|+.. .++..++..+..+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-----~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-----NIDKMSQGIPLTDED-RLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-----HHHHHhcCCCCCccc-chHHHHHHHHHHHH
Confidence 6999999999999999999999999887 578887653211 011123567777653 44566777776654
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.77 E-value=1.1e-09 Score=92.49 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=29.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLA--GLSKPTSGSINIRG 80 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g 80 (245)
-+++|++++|.||+|||||||...++ ++ .+..+.+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEc
Confidence 57899999999999999999987654 44 34445566643
No 476
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.76 E-value=2.1e-08 Score=79.00 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL-----VQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral-----~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.+.+++..++..-.....+...+|++++++....... ...|+++ |+|++|..+..++++.|.++
T Consensus 101 ~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666442223445777899998887666553 3445665 99999999999999988764
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.71 E-value=9.9e-07 Score=87.63 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=44.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhc-CceEEEEecChhHHHh
Q 035832 174 QLVQVPDLLILDEPLAGLD-WKARADVVKLLKHLKK-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 174 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~ 224 (245)
.+..+|.++++|||...|| +...+.+.+.++.+++ +..++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3467899999999999999 8889999999999864 6899999999987653
No 478
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.70 E-value=2.6e-08 Score=72.37 Aligned_cols=51 Identities=33% Similarity=0.503 Sum_probs=39.3
Q ss_pred CCCCCCCChHHHH-HHHHHHH------Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 155 DKDPHSLSGGYKR-RLALAIQ------LVQ------VPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 155 ~~~~~~LSgGqkq-rv~iAra------l~~------~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
.+...++|||||| .+.+|.+ +.. .|.+++|||||++||+...+.++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4577899999994 4444333 333 3799999999999999999999999874
No 479
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.69 E-value=2.3e-08 Score=91.85 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=55.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
.++.+.++..+..+ ..+++++ |++.+||.++|+|+||+|||||+++|+|+.+++.|.+.+.|+
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 47778888777543 5699999 999999999999999999999999999999999998877665
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.67 E-value=3.3e-07 Score=82.40 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
++++||-.+|+++++||+. |+++....++ ....+.+++.+.|..+.. ...+|+.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~v~~T~Ha~~~~-~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT---AAETGHLVFGTLHTNSAA-QTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCcEEEEEcCCCHH-HHHHHHH
Confidence 4677888999999999997 8887765443 334578899999985543 3445554
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.67 E-value=2.7e-08 Score=66.89 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=31.9
Q ss_pred eeeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 35 LNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 35 l~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
+++-++++.+ |+++.|.||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4556777775 67999999999999999999987776654
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.67 E-value=1.8e-08 Score=82.65 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
|++++|+||||||||||+++|++...+ .+.+.+..+..... ......+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPAS----AGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccc----hhHHhheeEcHHHH
Confidence 789999999999999999999999876 57777665543211 11234678888875
No 483
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.66 E-value=1.4e-08 Score=83.17 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLA--LAIQLVQ-VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~--iAral~~-~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
+.++++..++.-...-.++..+|+|++|++. +++.+-. +++++ |+|++|..+.+++++.|.++.
T Consensus 127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHh
Confidence 4455666666422345567889999999987 5555544 34443 999999999999999998764
No 484
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.65 E-value=5.9e-08 Score=86.29 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=48.7
Q ss_pred EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 23 VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 23 l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
++..|.. ...+++++ |.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|+
T Consensus 49 ~~~~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 49 IDEVLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred ceeEcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 4444543 35689999 999999999999999999999999999999999888877664
No 485
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.64 E-value=2.7e-08 Score=93.23 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=55.9
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+.|++..|+. ..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.++...+
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4588888864 4589999999999999999999999999999999999999999999987665
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.64 E-value=1.1e-08 Score=85.32 Aligned_cols=29 Identities=34% Similarity=0.261 Sum_probs=27.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 487
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.63 E-value=6.2e-08 Score=87.90 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=48.3
Q ss_pred eEEEEeEEEECCCCccceee-----------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILN-----------GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~-----------~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+.++||++.|++. +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 49999999999864 46897 9999999999999999999999999999998764
No 488
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.63 E-value=4.3e-08 Score=80.54 Aligned_cols=70 Identities=24% Similarity=0.175 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhH--HHhhccEEEEEeCC
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKE--MAALVDHSWRMDMG 235 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~--~~~~~d~v~~l~~G 235 (245)
|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+ +.+|++.+|.+.+ +...||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 78999999999999988764 3699999999865 67789999999865
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=98.57 E-value=8.7e-08 Score=86.56 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=58.2
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++.+.-.+.+|++++|+|+||+|||||++.|+|...++.|+|.+++..... . ...+.+++++|... +.+..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--t-----t~~~~l~~l~~~~~--l~Dtp 255 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--T-----TTHRELHPLPSGGL--LIDTP 255 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--h-----hhhccEEEecCCCe--ecCCC
Confidence 556666778999999999999999999999999999999999997643211 1 12457889998763 33444
Q ss_pred HHHHHHh
Q 035832 115 VLDEVIF 121 (245)
Q Consensus 115 v~e~l~~ 121 (245)
...++.+
T Consensus 256 G~~~~~l 262 (356)
T PRK01889 256 GMRELQL 262 (356)
T ss_pred chhhhcc
Confidence 5555544
No 490
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.55 E-value=1e-07 Score=87.86 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=46.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.+.+.|+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 4689999 999999999999999999999999999999999999988874
No 491
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.55 E-value=2.9e-06 Score=72.42 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhc--CceEEEEecChhHHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLL-KHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~--~~tiii~tHd~~~~~ 223 (245)
+.+..++|+||+..|=++.....+...+ +.+.+ +..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 3567899999999999999988776555 44543 578999999987643
No 492
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.55 E-value=5.9e-08 Score=80.50 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=26.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
No 493
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.54 E-value=5.6e-08 Score=89.48 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=56.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|.++.......... -....++|+|+..
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~-~~~~~tvVv~~~a 239 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGA-EGRARSVVIAAPA 239 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCc-CCCceEEEEEECC
Confidence 466666 9999999999999999999999999999999985 89999988774321111111 1346789999864
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.51 E-value=8.9e-07 Score=86.32 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=35.9
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
+++++.++.+++|++++++||||+||||++..|++.+....|
T Consensus 173 ~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 173 PVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 357788888889999999999999999999999998754333
No 495
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=5.3e-07 Score=69.06 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh------cCceEEEEecChh
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK------KELTILVVSHDLK 220 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~------~~~tiii~tHd~~ 220 (245)
.+......+...++.++++||.-.. ++.....+.+.+.... .+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666667777889999999997664 6667778888888764 3478999998654
No 496
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.50 E-value=1.3e-07 Score=87.17 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=45.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|...|+.|.+...|+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 4689999 999999999999999999999999999999999998888554
No 497
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.49 E-value=4.6e-08 Score=86.98 Aligned_cols=78 Identities=18% Similarity=0.039 Sum_probs=53.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC--CCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN--NSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
++|++++++|||||||||++..|++.+.+..++|.+.+.|...... .......+..+.+++|... ..+..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~-~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG-ADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC-CCHHHHHHHHHH
Confidence 5799999999999999999999999999888899998777532110 0000011345888888643 333345566654
Q ss_pred h
Q 035832 121 F 121 (245)
Q Consensus 121 ~ 121 (245)
.
T Consensus 191 ~ 191 (318)
T PRK10416 191 A 191 (318)
T ss_pred H
Confidence 3
No 498
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=8.4e-07 Score=80.32 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++++.++.+++|++++++||||+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999864
No 499
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.48 E-value=1.5e-07 Score=86.43 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=50.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 82 (245)
++-..++..+..+ ..+++ .+|++.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+.
T Consensus 115 ~~R~~i~~~l~tG-i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 115 MSRARVGEPLDTG-VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred hhccCcccccCCc-cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 3344444444432 45665 699999999999999999999999999999999999998887763
No 500
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=2.9e-07 Score=95.74 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCC-cceEEEcCccCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLL----AGLSKPT-SGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l----~Gl~~p~-~G~i~~~g~~~~~~~~~~~~ 92 (245)
|.++|+. +|+...+ +...+.|.+ .+++|+|||||||||++.+| .|..+|. .|.+++.+.++.+..
T Consensus 6 l~i~g~r-Sf~~~~~---~~~~I~F~~-~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~----- 75 (1311)
T TIGR00606 6 MSILGVR-SFGIEDK---DKQIIDFFS-PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQET----- 75 (1311)
T ss_pred eeeecee-cCCCccc---cceeeeccc-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccH-----
Confidence 6777774 6642111 122233434 49999999999999999999 5999996 788888765543211
Q ss_pred CCCCCcEEEEecCC
Q 035832 93 PLPPEKVGIVFQFP 106 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~ 106 (245)
..+..|.+.|++.
T Consensus 76 -~~~a~V~l~F~~~ 88 (1311)
T TIGR00606 76 -DVRAQIRLQFRDV 88 (1311)
T ss_pred -hhhheeEEEEEcC
Confidence 1245688888653
Done!