Query 035832
Match_columns 245
No_of_seqs 301 out of 1094
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.2E-62 4E-67 418.1 20.8 224 17-242 1-228 (235)
2 3gfo_A Cobalt import ATP-bindi 100.0 1.6E-62 5.6E-67 426.0 20.7 222 14-242 4-227 (275)
3 3tui_C Methionine import ATP-b 100.0 3E-62 1E-66 437.8 21.8 223 14-242 21-247 (366)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 7.1E-61 2.4E-65 428.4 25.9 218 16-242 3-222 (359)
5 3rlf_A Maltose/maltodextrin im 100.0 1.1E-60 3.8E-65 429.9 26.0 212 17-241 3-216 (381)
6 2pcj_A ABC transporter, lipopr 100.0 4.7E-61 1.6E-65 405.5 21.0 218 16-241 3-221 (224)
7 2olj_A Amino acid ABC transpor 100.0 2.7E-60 9.3E-65 409.7 23.7 217 17-241 24-241 (263)
8 1z47_A CYSA, putative ABC-tran 100.0 5.7E-60 2E-64 422.5 25.6 217 12-241 9-228 (355)
9 4g1u_C Hemin import ATP-bindin 100.0 5.6E-60 1.9E-64 408.5 24.7 216 14-242 8-231 (266)
10 1ji0_A ABC transporter; ATP bi 100.0 4.2E-60 1.4E-64 403.6 23.3 218 13-241 2-221 (240)
11 1g6h_A High-affinity branched- 100.0 3.5E-60 1.2E-64 407.9 21.4 220 15-241 5-235 (257)
12 2yyz_A Sugar ABC transporter, 100.0 2.2E-59 7.7E-64 419.4 27.2 212 17-241 3-216 (359)
13 1b0u_A Histidine permease; ABC 100.0 8.3E-60 2.8E-64 406.6 22.6 221 15-241 4-235 (262)
14 2it1_A 362AA long hypothetical 100.0 2.9E-59 9.9E-64 419.1 25.8 212 17-241 3-216 (362)
15 1v43_A Sugar-binding transport 100.0 5.3E-59 1.8E-63 418.8 26.8 213 16-241 10-224 (372)
16 1vpl_A ABC transporter, ATP-bi 100.0 1.9E-59 6.5E-64 403.0 22.4 217 13-241 11-228 (256)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-59 9.9E-64 418.4 23.9 217 17-241 3-223 (353)
18 1g29_1 MALK, maltose transport 100.0 5.7E-59 1.9E-63 419.0 24.8 218 17-241 3-222 (372)
19 2onk_A Molybdate/tungstate ABC 100.0 2E-58 6.7E-63 393.2 25.3 207 17-241 1-209 (240)
20 3d31_A Sulfate/molybdate ABC t 100.0 7.8E-59 2.7E-63 414.6 21.8 208 17-241 1-210 (348)
21 2yz2_A Putative ABC transporte 100.0 1.1E-58 3.8E-63 400.4 20.7 213 17-241 2-220 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-58 5E-63 402.1 20.5 221 14-241 18-245 (279)
23 2ixe_A Antigen peptide transpo 100.0 8.6E-58 3E-62 395.8 23.2 219 15-241 14-238 (271)
24 2ff7_A Alpha-hemolysin translo 100.0 2.4E-57 8.3E-62 388.1 23.2 208 17-241 7-225 (247)
25 3nh6_A ATP-binding cassette SU 100.0 2.7E-57 9.3E-62 398.3 24.0 217 16-242 52-271 (306)
26 2nq2_C Hypothetical ABC transp 100.0 1.3E-56 4.6E-61 384.7 26.1 205 16-241 3-210 (253)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 5.2E-58 1.8E-62 392.9 16.4 219 17-242 3-227 (250)
28 2zu0_C Probable ATP-dependent 100.0 4E-57 1.4E-61 390.9 19.9 230 7-242 10-248 (267)
29 1mv5_A LMRA, multidrug resista 100.0 1.2E-56 4.3E-61 382.8 22.5 208 17-241 1-219 (243)
30 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-56 7.3E-61 382.6 21.8 205 16-241 3-215 (249)
31 2ghi_A Transport protein; mult 100.0 1.7E-55 5.9E-60 379.2 22.2 209 16-241 16-235 (260)
32 1sgw_A Putative ABC transporte 100.0 2E-56 6.7E-61 374.7 13.3 202 15-237 8-210 (214)
33 2pjz_A Hypothetical protein ST 100.0 4.7E-55 1.6E-59 377.0 21.5 203 17-241 1-208 (263)
34 2cbz_A Multidrug resistance-as 100.0 1.6E-54 5.6E-59 368.4 22.8 201 17-241 3-210 (237)
35 2pze_A Cystic fibrosis transme 100.0 4.2E-54 1.4E-58 364.2 24.7 204 16-241 5-211 (229)
36 3gd7_A Fusion complex of cysti 100.0 3.2E-55 1.1E-59 396.4 15.3 208 15-241 17-235 (390)
37 3qf4_A ABC transporter, ATP-bi 100.0 5.3E-53 1.8E-57 400.9 20.2 217 17-242 341-560 (587)
38 4a82_A Cystic fibrosis transme 100.0 1.1E-52 3.9E-57 398.1 20.5 209 17-242 339-558 (578)
39 3b5x_A Lipid A export ATP-bind 100.0 3.5E-52 1.2E-56 395.1 23.4 211 16-241 340-560 (582)
40 3b60_A Lipid A export ATP-bind 100.0 3.2E-52 1.1E-56 395.3 22.0 210 16-241 340-560 (582)
41 2yl4_A ATP-binding cassette SU 100.0 1.2E-51 4.2E-56 392.2 22.9 212 18-242 342-564 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 3.9E-52 1.3E-56 395.8 15.7 209 17-242 354-572 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.5E-50 5.1E-55 353.3 19.8 200 15-241 38-240 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.3E-48 8E-53 396.7 20.3 211 17-242 1076-1298(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 3.8E-48 1.3E-52 394.2 19.4 216 17-241 387-606 (1284)
46 4f4c_A Multidrug resistance pr 100.0 1.6E-47 5.4E-52 390.6 22.5 213 17-242 415-635 (1321)
47 3g5u_A MCG1178, multidrug resi 100.0 1.4E-47 4.7E-52 390.2 19.7 218 17-242 1030-1252(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.3E-46 4.4E-51 357.5 23.1 198 14-240 354-555 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 9.7E-47 3.3E-51 354.4 20.9 198 14-240 284-485 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-46 8.7E-51 351.2 22.2 194 14-234 266-461 (538)
51 2iw3_A Elongation factor 3A; a 100.0 3.7E-45 1.3E-49 359.8 17.3 211 14-241 668-980 (986)
52 3bk7_A ABC transporter ATP-bin 100.0 6.7E-45 2.3E-49 345.7 17.0 206 13-235 79-304 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 1.9E-44 6.5E-49 342.3 19.2 194 21-241 350-552 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.7E-45 1.9E-49 342.4 13.4 200 18-235 21-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 9.5E-43 3.2E-47 342.8 22.5 191 17-239 435-625 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-43 5.2E-48 340.7 14.9 202 32-242 31-292 (670)
57 3ozx_A RNAse L inhibitor; ATP 100.0 3.8E-41 1.3E-45 316.1 14.8 198 21-236 3-214 (538)
58 3j16_B RLI1P; ribosome recycli 100.0 2.5E-41 8.5E-46 320.9 13.2 210 12-236 64-298 (608)
59 3ux8_A Excinuclease ABC, A sub 100.0 5.6E-40 1.9E-44 315.9 18.1 200 32-242 335-634 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 7.6E-37 2.6E-41 298.0 19.2 216 14-241 499-820 (842)
61 3pih_A Uvrabc system protein A 100.0 1E-36 3.6E-41 299.2 18.9 208 17-242 589-896 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 1E-36 3.5E-41 298.3 18.2 210 16-242 628-936 (972)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 4.3E-41 1.5E-45 310.3 -14.6 192 14-238 115-329 (460)
64 2ygr_A Uvrabc system protein A 100.0 4.4E-36 1.5E-40 294.7 16.1 209 16-241 646-953 (993)
65 4aby_A DNA repair protein RECN 100.0 6.6E-36 2.2E-40 271.7 16.0 200 33-240 49-380 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 8.3E-33 2.8E-37 248.5 13.6 84 155-239 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 2.9E-33 9.8E-38 225.9 3.9 148 37-225 1-165 (171)
68 3b85_A Phosphate starvation-in 100.0 8.5E-35 2.9E-39 242.4 -7.1 158 32-237 13-172 (208)
69 1e69_A Chromosome segregation 100.0 5.6E-32 1.9E-36 239.0 8.4 85 154-239 213-303 (322)
70 1tq4_A IIGP1, interferon-induc 100.0 6.2E-34 2.1E-38 258.8 -8.3 169 32-230 36-248 (413)
71 1ye8_A Protein THEP1, hypothet 100.0 3.5E-31 1.2E-35 215.4 1.9 141 47-228 2-152 (178)
72 1znw_A Guanylate kinase, GMP k 100.0 2.6E-33 8.7E-38 232.5 -13.5 179 32-234 9-203 (207)
73 3b9q_A Chloroplast SRP recepto 100.0 1.4E-30 4.6E-35 228.4 -3.6 181 35-238 90-285 (302)
74 2v9p_A Replication protein E1; 99.9 4E-33 1.4E-37 244.3 -20.7 158 17-241 101-259 (305)
75 2dpy_A FLII, flagellum-specifi 99.9 7.3E-31 2.5E-35 240.7 -10.9 194 16-241 130-337 (438)
76 1z6g_A Guanylate kinase; struc 99.9 9.2E-32 3.1E-36 225.3 -15.9 181 33-231 11-206 (218)
77 2og2_A Putative signal recogni 99.9 2.6E-29 8.9E-34 224.7 -2.5 180 36-238 148-342 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.9E-28 6.7E-33 217.2 1.9 131 34-236 160-291 (330)
79 3sop_A Neuronal-specific septi 99.9 4.9E-29 1.7E-33 215.3 -4.8 149 47-221 4-152 (270)
80 3aez_A Pantothenate kinase; tr 99.9 4.9E-30 1.7E-34 225.9 -13.4 176 17-233 43-243 (312)
81 2o8b_B DNA mismatch repair pro 99.9 3.8E-27 1.3E-31 234.6 3.1 168 14-238 747-930 (1022)
82 1tf7_A KAIC; homohexamer, hexa 99.9 4E-30 1.4E-34 241.0 -18.2 182 15-234 10-209 (525)
83 2o5v_A DNA replication and rep 99.9 2.2E-25 7.6E-30 199.4 13.0 82 155-242 259-350 (359)
84 2obl_A ESCN; ATPase, hydrolase 99.9 1.2E-28 4.2E-33 219.8 -8.4 194 16-241 44-248 (347)
85 3qkt_A DNA double-strand break 99.9 1.2E-25 4.2E-30 199.8 10.6 78 155-233 243-327 (339)
86 4ad8_A DNA repair protein RECN 99.9 1.1E-25 3.6E-30 210.6 10.3 79 156-235 392-473 (517)
87 1cr0_A DNA primase/helicase; R 99.9 9.3E-27 3.2E-31 202.6 2.6 182 33-237 23-237 (296)
88 1tf7_A KAIC; homohexamer, hexa 99.9 1.8E-25 6.2E-30 209.4 7.9 153 39-236 275-444 (525)
89 3pih_A Uvrabc system protein A 99.9 5.6E-25 1.9E-29 216.2 11.0 157 60-242 383-554 (916)
90 2eyu_A Twitching motility prot 99.9 3.2E-25 1.1E-29 190.5 2.4 141 17-233 5-146 (261)
91 2ehv_A Hypothetical protein PH 99.9 1.6E-26 5.6E-31 194.9 -5.7 181 17-233 6-206 (251)
92 2jeo_A Uridine-cytidine kinase 99.9 4.2E-26 1.5E-30 193.7 -3.2 165 31-229 11-176 (245)
93 2r6f_A Excinuclease ABC subuni 99.9 1.2E-23 4.1E-28 206.2 12.0 130 110-242 449-594 (972)
94 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 3.3E-23 1.1E-27 163.4 11.0 83 154-237 51-142 (148)
95 3thx_A DNA mismatch repair pro 99.9 3.6E-24 1.2E-28 211.2 5.9 162 15-241 629-806 (934)
96 2ygr_A Uvrabc system protein A 99.9 1.5E-22 5E-27 199.2 14.9 131 109-242 465-611 (993)
97 1w1w_A Structural maintenance 99.9 3.2E-22 1.1E-26 182.9 15.9 77 156-233 329-410 (430)
98 1ewq_A DNA mismatch repair pro 99.9 1.1E-23 3.7E-28 204.4 5.9 148 16-226 549-704 (765)
99 4a74_A DNA repair and recombin 99.9 9.3E-24 3.2E-28 175.9 2.9 148 41-235 21-200 (231)
100 3thx_B DNA mismatch repair pro 99.9 3.5E-23 1.2E-27 203.7 6.7 156 17-228 640-804 (918)
101 3szr_A Interferon-induced GTP- 99.9 9.2E-25 3.2E-29 207.8 -4.8 188 16-239 9-228 (608)
102 2qnr_A Septin-2, protein NEDD5 99.9 2.5E-25 8.4E-30 194.9 -8.5 163 21-220 2-168 (301)
103 2i3b_A HCR-ntpase, human cance 99.9 2.5E-25 8.4E-30 182.5 -8.3 157 45-239 1-167 (189)
104 1rj9_A FTSY, signal recognitio 99.9 1.1E-24 3.8E-29 191.0 -7.1 154 44-220 101-259 (304)
105 3asz_A Uridine kinase; cytidin 99.9 2.9E-25 9.8E-30 183.6 -12.3 144 42-219 3-161 (211)
106 2vf7_A UVRA2, excinuclease ABC 99.9 2.4E-21 8.4E-26 189.0 13.1 103 138-242 358-469 (842)
107 1pui_A ENGB, probable GTP-bind 99.8 2.3E-24 7.8E-29 177.3 -8.2 176 17-208 3-198 (210)
108 1wb9_A DNA mismatch repair pro 99.8 2.6E-22 8.8E-27 195.7 3.5 167 16-239 576-749 (800)
109 2w0m_A SSO2452; RECA, SSPF, un 99.8 5.2E-21 1.8E-25 159.0 8.4 169 32-235 9-192 (235)
110 3jvv_A Twitching mobility prot 99.8 6.7E-22 2.3E-26 176.8 2.8 147 21-235 92-246 (356)
111 1pzn_A RAD51, DNA repair and r 99.8 3.4E-22 1.2E-26 178.4 0.7 144 33-223 118-290 (349)
112 2qag_C Septin-7; cell cycle, c 99.8 4.3E-22 1.5E-26 181.3 -0.8 166 16-221 10-179 (418)
113 1nlf_A Regulatory protein REPA 99.8 2.9E-20 9.9E-25 160.4 9.1 151 41-222 26-184 (279)
114 3kta_B Chromosome segregation 99.8 9.7E-20 3.3E-24 147.1 10.5 82 154-236 58-145 (173)
115 1lw7_A Transcriptional regulat 99.8 1.2E-23 4.1E-28 188.6 -18.3 164 34-233 157-342 (365)
116 1s96_A Guanylate kinase, GMP k 99.8 1.8E-20 6.1E-25 156.9 0.7 133 36-224 7-145 (219)
117 2qag_B Septin-6, protein NEDD5 99.8 4E-20 1.4E-24 168.2 2.5 183 17-219 16-219 (427)
118 2gza_A Type IV secretion syste 99.8 1.9E-20 6.6E-25 167.7 0.2 152 19-235 137-302 (361)
119 1zp6_A Hypothetical protein AT 99.8 2.5E-22 8.7E-27 163.1 -11.8 153 41-217 5-158 (191)
120 2ewv_A Twitching motility prot 99.8 5.9E-20 2E-24 165.2 1.4 129 34-232 127-256 (372)
121 2qm8_A GTPase/ATPase; G protei 99.7 3.4E-22 1.2E-26 177.5 -15.7 182 17-207 29-259 (337)
122 1nij_A Hypothetical protein YJ 99.7 1.1E-22 3.8E-27 179.3 -19.2 165 46-225 5-195 (318)
123 2cvh_A DNA repair and recombin 99.7 9.3E-18 3.2E-22 138.5 10.1 152 33-235 7-185 (220)
124 2bdt_A BH3686; alpha-beta prot 99.7 5.1E-23 1.7E-27 167.4 -21.7 167 45-242 2-178 (189)
125 3auy_A DNA double-strand break 99.7 3E-17 1E-21 147.3 12.3 77 156-233 276-359 (371)
126 2rcn_A Probable GTPase ENGC; Y 99.7 6.8E-18 2.3E-22 150.5 6.5 139 34-207 205-345 (358)
127 2bbw_A Adenylate kinase 4, AK4 99.7 6.8E-21 2.3E-25 161.4 -12.9 144 44-208 26-198 (246)
128 3e70_C DPA, signal recognition 99.7 1.9E-19 6.4E-24 159.3 -4.8 170 41-238 125-307 (328)
129 1htw_A HI0065; nucleotide-bind 99.7 3.4E-20 1.2E-24 147.7 -9.3 89 19-121 9-97 (158)
130 1n0w_A DNA repair protein RAD5 99.7 3.2E-17 1.1E-21 137.3 7.2 146 41-235 20-209 (243)
131 1p9r_A General secretion pathw 99.7 2.5E-21 8.6E-26 176.3 -19.7 157 18-184 144-315 (418)
132 2yhs_A FTSY, cell division pro 99.7 1.6E-18 5.4E-23 159.9 -2.8 179 35-238 283-477 (503)
133 1sxj_E Activator 1 40 kDa subu 99.6 1.6E-16 5.6E-21 140.5 7.1 139 46-221 37-176 (354)
134 2oap_1 GSPE-2, type II secreti 99.6 3.7E-19 1.3E-23 165.9 -10.6 176 33-228 248-459 (511)
135 3ec2_A DNA replication protein 99.6 2.7E-17 9.3E-22 132.5 0.0 112 39-221 32-145 (180)
136 2yv5_A YJEQ protein; hydrolase 99.6 2.3E-18 8E-23 150.6 -7.0 127 40-173 160-300 (302)
137 1udx_A The GTP-binding protein 99.6 4.7E-17 1.6E-21 148.1 -2.2 160 35-223 147-313 (416)
138 1u0l_A Probable GTPase ENGC; p 99.6 2.6E-17 8.8E-22 143.8 -3.8 113 40-163 164-294 (301)
139 2kjq_A DNAA-related protein; s 99.6 1.7E-15 5.7E-20 119.2 6.7 43 175-218 80-124 (149)
140 2f1r_A Molybdopterin-guanine d 99.6 1.2E-18 4.1E-23 140.5 -12.7 137 46-206 3-159 (171)
141 1odf_A YGR205W, hypothetical 3 99.5 3.8E-17 1.3E-21 142.2 -6.5 128 43-194 29-168 (290)
142 3lda_A DNA repair protein RAD5 99.5 3.8E-14 1.3E-18 128.3 12.1 146 41-235 174-363 (400)
143 2x8a_A Nuclear valosin-contain 99.5 7.4E-19 2.5E-23 151.7 -20.3 147 32-204 33-191 (274)
144 1sq5_A Pantothenate kinase; P- 99.5 1.8E-17 6.3E-22 145.2 -12.1 138 17-192 37-198 (308)
145 1lvg_A Guanylate kinase, GMP k 99.5 4E-19 1.4E-23 146.1 -22.0 56 171-233 116-172 (198)
146 1in4_A RUVB, holliday junction 99.5 2.4E-18 8.1E-23 152.3 -19.3 182 17-228 18-211 (334)
147 3c8u_A Fructokinase; YP_612366 99.5 6.5E-17 2.2E-21 133.6 -9.6 120 42-188 19-140 (208)
148 3euj_A Chromosome partition pr 99.5 3.3E-14 1.1E-18 131.2 6.4 52 33-85 18-69 (483)
149 1t9h_A YLOQ, probable GTPase E 99.4 1.1E-15 3.7E-20 133.8 -6.8 121 40-168 168-303 (307)
150 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.4E-17 8.2E-22 148.8 -19.2 169 41-240 16-205 (392)
151 1ls1_A Signal recognition part 99.4 1.6E-12 5.4E-17 113.2 11.3 142 18-216 77-219 (295)
152 2px0_A Flagellar biosynthesis 99.4 5.9E-13 2E-17 115.9 8.2 139 43-239 103-246 (296)
153 1vma_A Cell division protein F 99.4 9.2E-14 3.1E-18 121.6 3.1 99 37-189 96-197 (306)
154 1qhl_A Protein (cell division 99.3 1.4E-14 4.9E-19 121.6 -4.7 79 17-105 9-91 (227)
155 3tr0_A Guanylate kinase, GMP k 99.3 1.2E-13 4.1E-18 112.7 -0.5 74 39-121 1-74 (205)
156 1iy2_A ATP-dependent metallopr 99.3 5.3E-16 1.8E-20 133.5 -17.3 158 19-202 51-221 (278)
157 2ius_A DNA translocase FTSK; n 99.3 8.2E-14 2.8E-18 129.4 -4.1 175 36-231 158-361 (512)
158 1ixz_A ATP-dependent metallopr 99.3 4.2E-16 1.4E-20 132.1 -18.3 160 18-203 26-198 (254)
159 3k1j_A LON protease, ATP-depen 99.2 2.1E-13 7.1E-18 129.6 -3.8 168 22-206 39-228 (604)
160 2dr3_A UPF0273 protein PH0284; 99.2 7.5E-11 2.5E-15 98.4 12.3 58 177-234 127-196 (247)
161 2r6a_A DNAB helicase, replicat 99.2 4E-12 1.4E-16 116.8 3.3 179 32-237 190-401 (454)
162 1oix_A RAS-related protein RAB 99.2 5.3E-13 1.8E-17 108.1 -2.6 36 168-205 153-188 (191)
163 2zr9_A Protein RECA, recombina 99.2 1.4E-11 4.7E-16 109.6 5.3 73 167-239 126-234 (349)
164 3lnc_A Guanylate kinase, GMP k 99.2 8.3E-12 2.8E-16 104.2 2.8 184 33-231 15-207 (231)
165 3kta_A Chromosome segregation 99.1 6.4E-11 2.2E-15 94.9 5.7 143 36-205 18-168 (182)
166 2qtf_A Protein HFLX, GTP-bindi 99.0 5.4E-11 1.8E-15 106.4 3.0 150 44-207 177-352 (364)
167 3nwj_A ATSK2; P loop, shikimat 99.0 1.3E-11 4.4E-16 105.0 -1.5 54 15-69 15-72 (250)
168 1svm_A Large T antigen; AAA+ f 99.0 2.5E-13 8.5E-18 122.0 -13.8 138 33-189 157-312 (377)
169 2f9l_A RAB11B, member RAS onco 99.0 4.1E-11 1.4E-15 97.3 -1.1 36 169-206 130-165 (199)
170 2dhr_A FTSH; AAA+ protein, hex 98.9 5E-12 1.7E-16 117.4 -8.4 133 33-189 54-187 (499)
171 2j41_A Guanylate kinase; GMP, 98.9 2.8E-10 9.7E-15 92.5 2.8 35 40-74 1-35 (207)
172 2xau_A PRE-mRNA-splicing facto 98.9 1.2E-09 4.2E-14 106.4 6.7 74 155-228 185-261 (773)
173 3a00_A Guanylate kinase, GMP k 98.9 4.5E-10 1.5E-14 90.7 2.1 33 45-77 1-33 (186)
174 2e87_A Hypothetical protein PH 98.9 6.1E-09 2.1E-13 92.6 9.5 125 44-220 166-293 (357)
175 3hr8_A Protein RECA; alpha and 98.9 6.5E-10 2.2E-14 99.0 2.8 40 41-80 57-97 (356)
176 3uie_A Adenylyl-sulfate kinase 98.9 6.8E-11 2.3E-15 96.5 -3.5 60 21-83 3-64 (200)
177 1jjv_A Dephospho-COA kinase; P 98.8 4.6E-10 1.6E-14 91.7 0.8 127 47-234 4-132 (206)
178 4e22_A Cytidylate kinase; P-lo 98.8 1.2E-10 4.2E-15 98.7 -2.8 61 43-106 25-96 (252)
179 3t34_A Dynamin-related protein 98.8 1.6E-08 5.5E-13 89.8 10.6 177 33-217 25-212 (360)
180 2ce7_A Cell division protein F 98.8 4.9E-09 1.7E-13 96.8 7.0 60 163-222 93-167 (476)
181 4eun_A Thermoresistant glucoki 98.7 2.9E-09 9.8E-14 86.8 2.5 77 35-121 19-95 (200)
182 1zu4_A FTSY; GTPase, signal re 98.7 1E-09 3.5E-14 96.4 -0.3 85 35-120 95-185 (320)
183 1fnn_A CDC6P, cell division co 98.7 4.7E-08 1.6E-12 86.5 8.7 48 177-225 124-175 (389)
184 3vaa_A Shikimate kinase, SK; s 98.7 1.1E-08 3.8E-13 83.2 3.6 39 31-69 11-49 (199)
185 1kgd_A CASK, peripheral plasma 98.7 6.7E-09 2.3E-13 83.3 2.2 35 44-78 4-39 (180)
186 2vp4_A Deoxynucleoside kinase; 98.6 1.2E-08 4.1E-13 85.0 2.6 42 38-83 13-54 (230)
187 1rz3_A Hypothetical protein rb 98.6 7.6E-09 2.6E-13 84.4 0.6 43 41-83 18-60 (201)
188 4a1f_A DNAB helicase, replicat 98.5 2.7E-07 9.1E-12 81.5 9.6 128 33-217 34-164 (338)
189 3ney_A 55 kDa erythrocyte memb 98.5 3.4E-08 1.2E-12 80.8 3.0 32 39-70 13-44 (197)
190 2dy1_A Elongation factor G; tr 98.5 8.5E-09 2.9E-13 98.9 -0.9 134 39-222 3-139 (665)
191 3tqc_A Pantothenate kinase; bi 98.5 8.7E-09 3E-13 90.5 -0.8 39 32-70 73-117 (321)
192 1ega_A Protein (GTP-binding pr 98.5 1.4E-08 4.8E-13 88.2 0.3 62 161-229 101-169 (301)
193 3tau_A Guanylate kinase, GMP k 98.5 4.8E-08 1.6E-12 80.1 3.3 35 43-77 6-41 (208)
194 1knq_A Gluconate kinase; ALFA/ 98.5 3.2E-08 1.1E-12 78.4 2.1 37 43-83 6-42 (175)
195 3cr8_A Sulfate adenylyltranfer 98.5 1.7E-08 5.9E-13 94.7 0.4 43 41-83 365-409 (552)
196 3kl4_A SRP54, signal recogniti 98.5 3.5E-07 1.2E-11 83.4 8.5 35 44-78 96-130 (433)
197 3bh0_A DNAB-like replicative h 98.3 9.1E-07 3.1E-11 77.2 7.0 130 33-217 56-189 (315)
198 2p67_A LAO/AO transport system 98.3 4.5E-08 1.5E-12 86.5 -1.9 65 17-83 30-94 (341)
199 1kag_A SKI, shikimate kinase I 98.3 2.5E-07 8.4E-12 72.9 2.5 33 44-80 3-35 (173)
200 1v5w_A DMC1, meiotic recombina 98.3 6.8E-06 2.3E-10 72.5 11.5 28 41-68 118-145 (343)
201 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 4.8E-07 1.6E-11 70.5 3.6 31 36-67 15-45 (149)
202 2qby_A CDC6 homolog 1, cell di 98.2 1.8E-07 6E-12 82.4 0.7 29 43-71 43-71 (386)
203 3m6a_A ATP-dependent protease 98.2 1.5E-07 5.2E-12 88.2 -0.4 49 32-81 96-144 (543)
204 1cke_A CK, MSSA, protein (cyti 98.2 8.7E-08 3E-12 78.9 -2.0 60 44-106 4-74 (227)
205 3ice_A Transcription terminati 98.2 1.9E-07 6.4E-12 83.7 -0.2 51 18-69 134-198 (422)
206 3b9p_A CG5977-PA, isoform A; A 98.2 2.3E-05 7.8E-10 67.0 12.8 70 163-232 98-186 (297)
207 2pez_A Bifunctional 3'-phospho 98.2 2.7E-07 9.2E-12 73.4 0.4 40 43-83 3-44 (179)
208 2z43_A DNA repair and recombin 98.2 1.1E-05 3.7E-10 70.5 10.6 28 41-68 103-130 (324)
209 2www_A Methylmalonic aciduria 98.2 3.7E-07 1.3E-11 81.0 1.2 42 43-84 72-113 (349)
210 2qt1_A Nicotinamide riboside k 98.2 8.2E-07 2.8E-11 72.2 3.1 34 37-70 13-46 (207)
211 4eaq_A DTMP kinase, thymidylat 98.1 7.4E-07 2.5E-11 74.3 2.6 44 34-78 12-58 (229)
212 2ffh_A Protein (FFH); SRP54, s 98.0 1E-06 3.5E-11 80.1 1.6 58 20-83 79-136 (425)
213 1m7g_A Adenylylsulfate kinase; 98.0 4.3E-07 1.5E-11 74.4 -0.9 44 40-83 20-65 (211)
214 2z4s_A Chromosomal replication 98.0 6.5E-06 2.2E-10 75.1 6.6 43 177-219 193-237 (440)
215 3qks_A DNA double-strand break 98.0 3E-06 1E-10 69.3 3.6 31 35-66 14-44 (203)
216 1f6b_A SAR1; gtpases, N-termin 98.0 1.4E-06 4.9E-11 70.3 1.0 42 24-67 6-47 (198)
217 1j8m_F SRP54, signal recogniti 97.9 9.3E-07 3.2E-11 76.7 -0.6 59 20-83 77-136 (297)
218 2q6t_A DNAB replication FORK h 97.9 3.9E-05 1.3E-09 69.9 10.0 172 33-233 188-396 (444)
219 1mky_A Probable GTP-binding pr 97.9 6.4E-06 2.2E-10 75.0 4.5 161 47-221 182-367 (439)
220 3llm_A ATP-dependent RNA helic 97.9 3.8E-06 1.3E-10 69.9 2.6 152 41-227 72-228 (235)
221 2gj8_A MNME, tRNA modification 97.9 7E-06 2.4E-10 64.6 4.0 28 43-70 2-29 (172)
222 2qag_A Septin-2, protein NEDD5 97.9 9.6E-07 3.3E-11 78.6 -1.2 54 17-78 17-70 (361)
223 1y63_A LMAJ004144AAA protein; 97.9 5.8E-06 2E-10 66.1 3.2 32 37-68 2-33 (184)
224 2yvu_A Probable adenylyl-sulfa 97.9 2.6E-06 8.9E-11 68.0 0.9 41 41-81 9-50 (186)
225 1m2o_B GTP-binding protein SAR 97.9 8.8E-06 3E-10 65.0 3.8 34 33-67 12-45 (190)
226 2qor_A Guanylate kinase; phosp 97.8 7.8E-06 2.7E-10 66.4 3.1 30 41-70 8-37 (204)
227 3auy_A DNA double-strand break 97.8 2E-05 7E-10 70.1 6.0 43 18-66 3-46 (371)
228 1u94_A RECA protein, recombina 97.8 0.00026 8.8E-09 62.8 12.4 27 42-68 60-86 (356)
229 2ohf_A Protein OLA1, GTP-bindi 97.8 1.4E-05 4.7E-10 71.9 4.0 41 41-81 18-69 (396)
230 2if2_A Dephospho-COA kinase; a 97.8 8.6E-06 3E-10 65.8 2.4 22 47-68 3-24 (204)
231 2wji_A Ferrous iron transport 97.7 2.7E-05 9.4E-10 60.5 5.0 24 47-70 5-28 (165)
232 1sxj_C Activator 1 40 kDa subu 97.7 8.1E-07 2.8E-11 78.0 -4.4 47 32-78 31-79 (340)
233 2wjg_A FEOB, ferrous iron tran 97.7 1.7E-05 5.8E-10 62.6 3.4 22 47-68 9-30 (188)
234 3t61_A Gluconokinase; PSI-biol 97.7 8.4E-06 2.9E-10 65.9 1.5 33 45-81 18-50 (202)
235 1njg_A DNA polymerase III subu 97.7 2.1E-05 7.3E-10 63.8 3.7 43 177-220 125-167 (250)
236 2zej_A Dardarin, leucine-rich 97.7 2.2E-05 7.7E-10 62.2 3.3 26 47-72 4-29 (184)
237 2ga8_A Hypothetical 39.9 kDa p 97.7 5.2E-06 1.8E-10 73.6 -0.6 37 33-69 10-48 (359)
238 1q3t_A Cytidylate kinase; nucl 97.6 1.2E-05 4.2E-10 66.7 1.1 35 43-77 14-51 (236)
239 2p5t_B PEZT; postsegregational 97.6 1.3E-05 4.3E-10 67.5 1.0 46 35-83 23-68 (253)
240 1np6_A Molybdopterin-guanine d 97.6 1.9E-05 6.4E-10 63.1 1.8 38 45-82 6-46 (174)
241 3cm0_A Adenylate kinase; ATP-b 97.6 2.8E-05 9.6E-10 61.6 2.8 25 43-67 2-26 (186)
242 4ag6_A VIRB4 ATPase, type IV s 97.5 2.9E-05 9.8E-10 69.4 2.3 58 177-234 261-334 (392)
243 3r20_A Cytidylate kinase; stru 97.5 1.7E-05 5.9E-10 66.3 0.7 33 44-76 8-43 (233)
244 1lv7_A FTSH; alpha/beta domain 97.5 3.3E-05 1.1E-09 64.7 2.0 46 34-83 36-81 (257)
245 1qhx_A CPT, protein (chloramph 97.5 6.6E-05 2.3E-09 59.0 3.6 26 45-70 3-28 (178)
246 3kb2_A SPBC2 prophage-derived 97.5 5.8E-05 2E-09 58.7 3.1 23 47-69 3-25 (173)
247 3lxx_A GTPase IMAP family memb 97.4 7.7E-05 2.6E-09 61.8 3.8 29 47-75 31-59 (239)
248 1ypw_A Transitional endoplasmi 97.4 4.8E-05 1.7E-09 74.4 2.6 32 40-71 233-264 (806)
249 1kht_A Adenylate kinase; phosp 97.4 9.5E-05 3.2E-09 58.5 3.5 26 44-69 2-27 (192)
250 3dm5_A SRP54, signal recogniti 97.4 0.0028 9.7E-08 57.7 13.4 27 44-70 99-125 (443)
251 2rhm_A Putative kinase; P-loop 97.3 8.9E-05 3E-09 58.9 2.9 26 43-68 3-28 (193)
252 3lw7_A Adenylate kinase relate 97.3 0.00011 3.7E-09 56.9 3.2 19 47-65 3-21 (179)
253 3iij_A Coilin-interacting nucl 97.3 7.1E-05 2.4E-09 59.1 2.2 24 43-66 9-32 (180)
254 1vht_A Dephospho-COA kinase; s 97.3 0.00012 4.1E-09 59.7 3.4 32 44-80 3-34 (218)
255 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.3E-09 58.9 3.0 22 48-69 4-25 (186)
256 2v54_A DTMP kinase, thymidylat 97.3 0.00016 5.4E-09 58.0 3.6 27 43-69 2-28 (204)
257 1gtv_A TMK, thymidylate kinase 97.3 2.8E-05 9.5E-10 63.0 -1.0 30 47-76 2-31 (214)
258 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.8E-09 58.1 3.2 23 47-69 2-24 (205)
259 2ze6_A Isopentenyl transferase 97.3 0.00013 4.4E-09 61.4 3.0 23 47-69 3-25 (253)
260 1via_A Shikimate kinase; struc 97.3 0.00013 4.3E-09 57.4 2.8 23 47-69 6-28 (175)
261 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 57.1 3.4 25 44-68 4-28 (185)
262 1uf9_A TT1252 protein; P-loop, 97.2 0.00012 4.2E-09 58.5 2.7 31 45-80 8-38 (203)
263 3ihw_A Centg3; RAS, centaurin, 97.2 0.0003 1E-08 55.7 4.7 34 47-80 22-64 (184)
264 1ly1_A Polynucleotide kinase; 97.2 0.00018 6.1E-09 56.3 3.2 22 46-67 3-24 (181)
265 3cf0_A Transitional endoplasmi 97.2 0.00011 3.8E-09 63.3 2.2 39 40-80 44-82 (301)
266 1nn5_A Similar to deoxythymidy 97.2 0.00021 7.1E-09 57.7 3.3 27 42-68 6-32 (215)
267 1gvn_B Zeta; postsegregational 97.2 0.00018 6E-09 61.8 3.0 37 42-80 30-66 (287)
268 2c95_A Adenylate kinase 1; tra 97.2 0.00021 7.3E-09 56.8 3.3 26 43-68 7-32 (196)
269 2plr_A DTMP kinase, probable t 97.2 0.00021 7.3E-09 57.4 3.4 27 44-70 3-29 (213)
270 1jal_A YCHF protein; nucleotid 97.2 0.00028 9.4E-09 62.8 4.3 36 45-80 2-48 (363)
271 2wwf_A Thymidilate kinase, put 97.2 0.00022 7.7E-09 57.4 3.4 26 43-68 8-33 (212)
272 1q57_A DNA primase/helicase; d 97.1 0.011 3.8E-07 54.3 15.1 33 35-67 232-264 (503)
273 3k53_A Ferrous iron transport 97.1 0.0002 6.9E-09 60.6 3.0 43 187-229 144-188 (271)
274 1tev_A UMP-CMP kinase; ploop, 97.1 0.00027 9.1E-09 56.0 3.2 23 45-67 3-25 (196)
275 1nks_A Adenylate kinase; therm 97.1 0.00026 9E-09 55.9 2.9 23 47-69 3-25 (194)
276 2bwj_A Adenylate kinase 5; pho 97.1 9.5E-05 3.3E-09 59.0 0.3 29 41-69 8-36 (199)
277 4fcw_A Chaperone protein CLPB; 97.0 0.00019 6.4E-09 61.4 1.9 45 33-77 24-79 (311)
278 2z0h_A DTMP kinase, thymidylat 97.0 0.00034 1.2E-08 55.6 3.2 23 47-69 2-24 (197)
279 3ake_A Cytidylate kinase; CMP 97.0 0.00034 1.2E-08 56.1 3.2 23 47-69 4-26 (208)
280 2vli_A Antibiotic resistance p 97.0 0.00025 8.6E-09 55.8 2.3 25 44-68 4-28 (183)
281 1xjc_A MOBB protein homolog; s 97.0 0.00038 1.3E-08 55.2 3.2 26 46-71 5-30 (169)
282 1aky_A Adenylate kinase; ATP:A 96.9 0.0005 1.7E-08 56.0 3.6 26 44-69 3-28 (220)
283 3b1v_A Ferrous iron uptake tra 96.9 0.00044 1.5E-08 58.9 3.4 23 47-69 5-27 (272)
284 1zd8_A GTP:AMP phosphotransfer 96.9 0.00045 1.5E-08 56.7 3.2 26 43-68 5-30 (227)
285 3q72_A GTP-binding protein RAD 96.9 0.0004 1.4E-08 53.2 2.7 23 48-70 5-27 (166)
286 1fzq_A ADP-ribosylation factor 96.9 0.00041 1.4E-08 54.6 2.7 23 47-69 18-40 (181)
287 2ged_A SR-beta, signal recogni 96.9 0.00037 1.3E-08 55.1 2.4 25 46-70 49-73 (193)
288 2nzj_A GTP-binding protein REM 96.9 0.0005 1.7E-08 53.0 3.1 23 47-69 6-28 (175)
289 3fb4_A Adenylate kinase; psych 96.9 0.00049 1.7E-08 55.8 3.2 21 47-67 2-22 (216)
290 2pbr_A DTMP kinase, thymidylat 96.9 0.00052 1.8E-08 54.3 3.2 23 47-69 2-24 (195)
291 1e6c_A Shikimate kinase; phosp 96.9 0.00046 1.6E-08 53.7 2.8 23 46-68 3-25 (173)
292 1zuh_A Shikimate kinase; alpha 96.9 0.00058 2E-08 53.1 3.4 23 45-67 7-29 (168)
293 2erx_A GTP-binding protein DI- 96.9 0.00054 1.8E-08 52.5 3.1 22 47-68 5-26 (172)
294 2cdn_A Adenylate kinase; phosp 96.9 0.00066 2.3E-08 54.5 3.6 25 44-68 19-43 (201)
295 1zak_A Adenylate kinase; ATP:A 96.9 0.00048 1.7E-08 56.2 2.9 25 44-68 4-28 (222)
296 3tw8_B RAS-related protein RAB 96.9 0.00054 1.9E-08 53.1 3.0 22 48-69 12-33 (181)
297 3q85_A GTP-binding protein REM 96.9 0.00057 1.9E-08 52.5 3.1 22 48-69 5-26 (169)
298 1ko7_A HPR kinase/phosphatase; 96.8 0.00077 2.6E-08 58.7 4.1 46 33-79 133-182 (314)
299 1ukz_A Uridylate kinase; trans 96.8 0.00061 2.1E-08 54.6 3.3 25 44-68 14-38 (203)
300 2pt5_A Shikimate kinase, SK; a 96.8 0.00062 2.1E-08 52.7 3.3 22 47-68 2-23 (168)
301 1z2a_A RAS-related protein RAB 96.8 0.00044 1.5E-08 52.9 2.4 22 48-69 8-29 (168)
302 2w58_A DNAI, primosome compone 96.8 0.00043 1.5E-08 55.5 2.3 24 46-69 55-78 (202)
303 2iyv_A Shikimate kinase, SK; t 96.8 0.00055 1.9E-08 54.0 2.9 23 46-68 3-25 (184)
304 3dl0_A Adenylate kinase; phosp 96.8 0.0006 2.1E-08 55.3 3.2 22 47-68 2-23 (216)
305 1qf9_A UMP/CMP kinase, protein 96.8 0.0005 1.7E-08 54.2 2.6 24 45-68 6-29 (194)
306 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00063 2.2E-08 57.2 3.4 25 44-68 3-27 (260)
307 3euj_A Chromosome partition pr 96.8 0.0021 7.2E-08 59.1 7.0 75 154-233 373-464 (483)
308 2lkc_A Translation initiation 96.8 0.00085 2.9E-08 51.9 3.8 25 44-68 7-31 (178)
309 2dyk_A GTP-binding protein; GT 96.8 0.00052 1.8E-08 52.2 2.4 23 47-69 3-25 (161)
310 3lxw_A GTPase IMAP family memb 96.8 0.00062 2.1E-08 56.9 3.1 24 47-70 23-46 (247)
311 1kao_A RAP2A; GTP-binding prot 96.8 0.00053 1.8E-08 52.2 2.4 22 47-68 5-26 (167)
312 3bos_A Putative DNA replicatio 96.8 0.00077 2.6E-08 54.8 3.6 27 44-70 51-77 (242)
313 2ce2_X GTPase HRAS; signaling 96.8 0.00047 1.6E-08 52.3 2.1 22 48-69 6-27 (166)
314 1svi_A GTP-binding protein YSX 96.8 0.00057 1.9E-08 54.0 2.6 24 46-69 24-47 (195)
315 1u8z_A RAS-related protein RAL 96.8 0.00055 1.9E-08 52.2 2.4 21 48-68 7-27 (168)
316 1z0j_A RAB-22, RAS-related pro 96.8 0.00057 1.9E-08 52.4 2.4 22 48-69 9-30 (170)
317 1uj2_A Uridine-cytidine kinase 96.8 0.0007 2.4E-08 56.6 3.2 23 46-68 23-45 (252)
318 3pqc_A Probable GTP-binding pr 96.8 0.0006 2.1E-08 53.5 2.6 23 47-69 25-47 (195)
319 1moz_A ARL1, ADP-ribosylation 96.8 0.00044 1.5E-08 53.9 1.7 23 45-67 18-40 (183)
320 1z08_A RAS-related protein RAB 96.8 0.00058 2E-08 52.4 2.4 22 47-68 8-29 (170)
321 1a7j_A Phosphoribulokinase; tr 96.7 0.0004 1.4E-08 59.7 1.6 26 44-69 4-29 (290)
322 1ek0_A Protein (GTP-binding pr 96.7 0.00058 2E-08 52.2 2.4 22 48-69 6-27 (170)
323 2grj_A Dephospho-COA kinase; T 96.7 0.00078 2.7E-08 54.4 3.2 24 45-68 12-35 (192)
324 3bgw_A DNAB-like replicative h 96.7 0.0018 6E-08 59.0 5.9 34 34-67 186-219 (444)
325 1ky3_A GTP-binding protein YPT 96.7 0.0006 2.1E-08 52.8 2.4 23 47-69 10-32 (182)
326 1c1y_A RAS-related protein RAP 96.7 0.00061 2.1E-08 52.0 2.4 21 48-68 6-26 (167)
327 2cxx_A Probable GTP-binding pr 96.7 0.00065 2.2E-08 53.2 2.5 22 48-69 4-25 (190)
328 1g16_A RAS-related protein SEC 96.7 0.00055 1.9E-08 52.4 2.1 22 48-69 6-27 (170)
329 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00063 2.1E-08 52.7 2.4 22 48-69 10-31 (177)
330 1wf3_A GTP-binding protein; GT 96.7 0.00085 2.9E-08 57.9 3.3 23 47-69 9-31 (301)
331 2fn4_A P23, RAS-related protei 96.7 0.00062 2.1E-08 52.7 2.1 22 47-68 11-32 (181)
332 2xb4_A Adenylate kinase; ATP-b 96.7 0.00093 3.2E-08 54.8 3.2 22 47-68 2-23 (223)
333 2hxs_A RAB-26, RAS-related pro 96.7 0.00087 3E-08 51.9 2.8 22 48-69 9-30 (178)
334 3tlx_A Adenylate kinase 2; str 96.7 0.001 3.5E-08 55.4 3.4 25 43-67 27-51 (243)
335 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00075 2.6E-08 52.7 2.4 22 48-69 7-28 (189)
336 1r2q_A RAS-related protein RAB 96.7 0.00075 2.6E-08 51.6 2.4 21 48-68 9-29 (170)
337 3cbq_A GTP-binding protein REM 96.6 0.00077 2.6E-08 53.8 2.5 23 47-69 25-47 (195)
338 3t5d_A Septin-7; GTP-binding p 96.6 0.00081 2.8E-08 56.9 2.7 23 48-70 11-33 (274)
339 2oil_A CATX-8, RAS-related pro 96.6 0.00075 2.6E-08 53.3 2.4 23 47-69 27-49 (193)
340 3t1o_A Gliding protein MGLA; G 96.6 0.0008 2.8E-08 52.9 2.6 24 48-71 17-40 (198)
341 3clv_A RAB5 protein, putative; 96.6 0.00076 2.6E-08 53.1 2.4 23 47-69 9-31 (208)
342 3iby_A Ferrous iron transport 96.6 0.00094 3.2E-08 56.2 3.0 23 47-69 3-25 (256)
343 2f6r_A COA synthase, bifunctio 96.6 0.0009 3.1E-08 57.1 2.9 23 45-67 75-97 (281)
344 1upt_A ARL1, ADP-ribosylation 96.6 0.00079 2.7E-08 51.7 2.4 22 47-68 9-30 (171)
345 3bc1_A RAS-related protein RAB 96.6 0.00078 2.7E-08 52.7 2.4 22 47-68 13-34 (195)
346 3iev_A GTP-binding protein ERA 96.6 0.001 3.5E-08 57.5 3.3 23 47-69 12-34 (308)
347 1jbk_A CLPB protein; beta barr 96.6 0.0013 4.5E-08 51.1 3.6 27 43-69 41-67 (195)
348 1r8s_A ADP-ribosylation factor 96.6 0.00085 2.9E-08 51.2 2.4 20 48-67 3-22 (164)
349 3v9p_A DTMP kinase, thymidylat 96.6 0.001 3.4E-08 55.3 2.9 29 42-70 22-50 (227)
350 1ksh_A ARF-like protein 2; sma 96.6 0.0012 3.9E-08 51.8 3.1 25 45-69 18-42 (186)
351 2a9k_A RAS-related protein RAL 96.6 0.00091 3.1E-08 52.0 2.4 22 47-68 20-41 (187)
352 3con_A GTPase NRAS; structural 96.6 0.0009 3.1E-08 52.6 2.4 22 47-68 23-44 (190)
353 2y8e_A RAB-protein 6, GH09086P 96.6 0.00082 2.8E-08 51.9 2.1 22 47-68 16-37 (179)
354 2g6b_A RAS-related protein RAB 96.6 0.00092 3.2E-08 51.8 2.4 23 47-69 12-34 (180)
355 1z0f_A RAB14, member RAS oncog 96.6 0.00093 3.2E-08 51.6 2.4 22 48-69 18-39 (179)
356 2dby_A GTP-binding protein; GD 96.5 0.00087 3E-08 59.7 2.4 21 48-68 4-24 (368)
357 2il1_A RAB12; G-protein, GDP, 96.5 0.0012 4.2E-08 52.2 3.0 22 48-69 29-50 (192)
358 3a1s_A Iron(II) transport prot 96.5 0.0012 4.2E-08 55.5 3.1 23 47-69 7-29 (258)
359 2efe_B Small GTP-binding prote 96.5 0.001 3.5E-08 51.6 2.4 23 47-69 14-36 (181)
360 2xtp_A GTPase IMAP family memb 96.5 0.0012 4.2E-08 55.0 3.1 23 47-69 24-46 (260)
361 3be4_A Adenylate kinase; malar 96.5 0.0013 4.4E-08 53.6 3.1 26 44-69 4-29 (217)
362 1nrj_B SR-beta, signal recogni 96.5 0.001 3.4E-08 53.7 2.4 23 47-69 14-36 (218)
363 4dhe_A Probable GTP-binding pr 96.5 0.00081 2.8E-08 54.4 1.8 24 46-69 30-53 (223)
364 1e4v_A Adenylate kinase; trans 96.5 0.0012 4.2E-08 53.5 2.9 21 47-67 2-22 (214)
365 3i8s_A Ferrous iron transport 96.5 0.0013 4.4E-08 55.8 3.1 23 47-69 5-27 (274)
366 1zbd_A Rabphilin-3A; G protein 96.5 0.0014 4.7E-08 52.2 3.1 22 48-69 11-32 (203)
367 2bme_A RAB4A, RAS-related prot 96.5 0.00096 3.3E-08 52.1 2.1 23 47-69 12-34 (186)
368 1ltq_A Polynucleotide kinase; 96.5 0.0014 4.7E-08 55.9 3.2 22 46-67 3-24 (301)
369 2bov_A RAla, RAS-related prote 96.5 0.0011 3.7E-08 52.7 2.4 21 48-68 17-37 (206)
370 3zvl_A Bifunctional polynucleo 96.5 0.0015 5.3E-08 58.8 3.7 28 41-68 254-281 (416)
371 4edh_A DTMP kinase, thymidylat 96.5 0.0015 5.2E-08 53.5 3.3 28 43-70 4-31 (213)
372 1vg8_A RAS-related protein RAB 96.5 0.0011 3.8E-08 52.7 2.4 23 47-69 10-32 (207)
373 2gf9_A RAS-related protein RAB 96.5 0.0011 3.8E-08 52.2 2.4 23 47-69 24-46 (189)
374 2h57_A ADP-ribosylation factor 96.5 0.0011 3.7E-08 52.3 2.3 23 47-69 23-45 (190)
375 3cnl_A YLQF, putative uncharac 96.5 0.0016 5.4E-08 55.1 3.4 30 46-75 100-129 (262)
376 4bas_A ADP-ribosylation factor 96.5 0.0015 5.1E-08 51.6 3.1 23 47-69 19-41 (199)
377 3t5g_A GTP-binding protein RHE 96.5 0.0024 8.2E-08 49.6 4.2 21 47-67 8-28 (181)
378 3tkl_A RAS-related protein RAB 96.5 0.0011 3.9E-08 52.1 2.4 22 48-69 19-40 (196)
379 1m7b_A RND3/RHOE small GTP-bin 96.5 0.001 3.6E-08 52.2 2.1 21 48-68 10-30 (184)
380 2qu8_A Putative nucleolar GTP- 96.5 0.0015 5.1E-08 53.4 3.1 23 47-69 31-53 (228)
381 2gf0_A GTP-binding protein DI- 96.4 0.0011 3.7E-08 52.4 2.1 22 47-68 10-31 (199)
382 2o52_A RAS-related protein RAB 96.4 0.0014 4.7E-08 52.4 2.8 23 47-69 27-49 (200)
383 3d3q_A TRNA delta(2)-isopenten 96.4 0.0015 5.1E-08 57.5 3.2 25 46-70 8-32 (340)
384 3lv8_A DTMP kinase, thymidylat 96.4 0.0017 5.7E-08 54.2 3.3 27 44-70 26-52 (236)
385 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.6E-08 53.1 3.7 26 44-69 15-40 (233)
386 2fg5_A RAB-22B, RAS-related pr 96.4 0.0011 3.8E-08 52.4 2.1 22 48-69 26-47 (192)
387 1l8q_A Chromosomal replication 96.4 0.0014 4.8E-08 56.6 3.0 42 176-217 96-139 (324)
388 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0012 4.3E-08 51.3 2.4 22 47-68 7-28 (186)
389 3h4m_A Proteasome-activating n 96.4 0.0018 6.1E-08 54.6 3.5 28 42-69 48-75 (285)
390 1zj6_A ADP-ribosylation factor 96.4 0.0015 5E-08 51.4 2.8 22 47-68 18-39 (187)
391 2cjw_A GTP-binding protein GEM 96.4 0.0013 4.3E-08 52.4 2.4 21 47-67 8-28 (192)
392 3kkq_A RAS-related protein M-R 96.4 0.0017 5.9E-08 50.5 3.1 21 48-68 21-41 (183)
393 2wsm_A Hydrogenase expression/ 96.4 0.0013 4.4E-08 53.2 2.4 24 46-69 31-54 (221)
394 1z06_A RAS-related protein RAB 96.4 0.0013 4.6E-08 51.7 2.4 22 47-68 22-43 (189)
395 1jwy_B Dynamin A GTPase domain 96.4 0.0016 5.5E-08 55.8 3.0 24 47-70 26-49 (315)
396 2f7s_A C25KG, RAS-related prot 96.4 0.0018 6.2E-08 52.1 3.2 23 48-70 28-50 (217)
397 2a5j_A RAS-related protein RAB 96.4 0.0014 4.7E-08 51.8 2.4 22 48-69 24-45 (191)
398 2p65_A Hypothetical protein PF 96.4 0.0017 5.7E-08 50.5 2.8 28 43-70 41-68 (187)
399 3oes_A GTPase rhebl1; small GT 96.4 0.0012 4.2E-08 52.6 2.1 23 47-69 26-48 (201)
400 2h17_A ADP-ribosylation factor 96.4 0.0014 4.7E-08 51.3 2.3 23 47-69 23-45 (181)
401 3tqf_A HPR(Ser) kinase; transf 96.4 0.0031 1.1E-07 50.2 4.3 34 33-67 5-38 (181)
402 4tmk_A Protein (thymidylate ki 96.4 0.002 6.9E-08 52.8 3.4 27 44-70 2-28 (213)
403 3a8t_A Adenylate isopentenyltr 96.4 0.0019 6.5E-08 56.7 3.3 26 44-69 39-64 (339)
404 3llu_A RAS-related GTP-binding 96.4 0.0019 6.3E-08 51.4 3.0 24 47-70 22-45 (196)
405 3exa_A TRNA delta(2)-isopenten 96.4 0.002 6.7E-08 56.1 3.4 25 45-69 3-27 (322)
406 2h92_A Cytidylate kinase; ross 96.3 0.0019 6.4E-08 52.4 3.1 25 45-69 3-27 (219)
407 2q3h_A RAS homolog gene family 96.3 0.0019 6.6E-08 51.2 3.1 23 47-69 22-44 (201)
408 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0019 6.3E-08 59.2 3.3 36 34-70 141-176 (473)
409 3dz8_A RAS-related protein RAB 96.3 0.0013 4.5E-08 51.9 2.1 22 48-69 26-47 (191)
410 3reg_A RHO-like small GTPase; 96.3 0.0015 5.1E-08 51.6 2.4 23 47-69 25-47 (194)
411 2ew1_A RAS-related protein RAB 96.3 0.0013 4.5E-08 52.9 2.1 22 47-68 28-49 (201)
412 2atv_A RERG, RAS-like estrogen 96.3 0.0016 5.3E-08 51.7 2.4 22 47-68 30-51 (196)
413 1zd9_A ADP-ribosylation factor 96.3 0.0015 5.2E-08 51.4 2.4 22 47-68 24-45 (188)
414 3umf_A Adenylate kinase; rossm 96.3 0.0017 5.9E-08 53.5 2.7 29 39-67 23-51 (217)
415 2j1l_A RHO-related GTP-binding 96.3 0.0018 6.3E-08 52.3 2.9 22 47-68 36-57 (214)
416 2qmh_A HPR kinase/phosphorylas 96.3 0.0028 9.6E-08 51.6 3.9 36 33-69 23-58 (205)
417 2i1q_A DNA repair and recombin 96.3 0.002 6.8E-08 55.8 3.2 27 41-67 94-120 (322)
418 1x3s_A RAS-related protein RAB 96.3 0.0016 5.4E-08 51.1 2.4 23 47-69 17-39 (195)
419 3cph_A RAS-related protein SEC 96.3 0.0016 5.4E-08 52.1 2.4 23 47-69 22-44 (213)
420 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0014 4.9E-08 52.3 2.1 23 47-69 10-32 (206)
421 2p5s_A RAS and EF-hand domain 96.3 0.0016 5.5E-08 51.8 2.4 23 47-69 30-52 (199)
422 3tmk_A Thymidylate kinase; pho 96.3 0.0023 7.8E-08 52.7 3.3 29 43-71 3-31 (216)
423 1ypw_A Transitional endoplasmi 96.3 0.00071 2.4E-08 66.2 0.2 44 38-83 504-547 (806)
424 2iwr_A Centaurin gamma 1; ANK 96.3 0.0013 4.4E-08 51.0 1.7 22 47-68 9-30 (178)
425 2ocp_A DGK, deoxyguanosine kin 96.3 0.0021 7.2E-08 53.1 3.1 27 44-70 1-27 (241)
426 2fu5_C RAS-related protein RAB 96.3 0.0013 4.4E-08 51.3 1.6 23 47-69 10-32 (183)
427 3crm_A TRNA delta(2)-isopenten 96.3 0.0022 7.5E-08 56.0 3.2 24 46-69 6-29 (323)
428 2b6h_A ADP-ribosylation factor 96.3 0.0019 6.6E-08 51.2 2.7 24 46-69 30-53 (192)
429 3ld9_A DTMP kinase, thymidylat 96.3 0.0024 8.4E-08 52.8 3.3 28 43-70 19-46 (223)
430 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0028 9.4E-08 52.6 3.6 27 43-69 37-63 (262)
431 2fv8_A H6, RHO-related GTP-bin 96.2 0.0017 5.7E-08 52.1 2.1 23 47-69 27-49 (207)
432 3c5c_A RAS-like protein 12; GD 96.2 0.0019 6.4E-08 51.0 2.4 22 47-68 23-44 (187)
433 2aka_B Dynamin-1; fusion prote 96.2 0.0019 6.5E-08 54.8 2.6 24 47-70 28-51 (299)
434 3bwd_D RAC-like GTP-binding pr 96.2 0.0024 8.4E-08 49.4 3.0 23 47-69 10-32 (182)
435 1gwn_A RHO-related GTP-binding 96.2 0.0017 5.7E-08 52.4 2.1 23 47-69 30-52 (205)
436 3def_A T7I23.11 protein; chlor 96.2 0.0024 8.1E-08 53.6 3.1 23 47-69 38-60 (262)
437 3cmw_A Protein RECA, recombina 96.2 0.033 1.1E-06 58.3 12.0 145 42-241 380-558 (1706)
438 2g3y_A GTP-binding protein GEM 96.2 0.0027 9.1E-08 51.8 3.1 23 47-69 39-61 (211)
439 1h65_A Chloroplast outer envel 96.2 0.0024 8.4E-08 53.8 3.0 23 47-69 41-63 (270)
440 2r62_A Cell division protease 96.2 0.00069 2.3E-08 56.8 -0.5 30 37-68 38-67 (268)
441 2fh5_B SR-beta, signal recogni 96.2 0.0028 9.6E-08 50.8 3.2 23 47-69 9-31 (214)
442 2zts_A Putative uncharacterize 96.2 0.0035 1.2E-07 51.4 3.8 61 173-233 130-206 (251)
443 3n70_A Transport activator; si 96.1 0.0035 1.2E-07 47.7 3.5 38 180-218 78-115 (145)
444 4dcu_A GTP-binding protein ENG 96.1 0.0022 7.5E-08 58.4 2.6 22 47-68 25-46 (456)
445 2gco_A H9, RHO-related GTP-bin 96.1 0.002 6.8E-08 51.4 2.1 22 48-69 28-49 (201)
446 1sxj_D Activator 1 41 kDa subu 96.1 0.001 3.5E-08 57.6 0.4 42 178-220 133-174 (353)
447 1p5z_B DCK, deoxycytidine kina 96.1 0.0018 6E-08 54.4 1.8 27 43-69 22-48 (263)
448 4djt_A GTP-binding nuclear pro 96.1 0.0012 4.1E-08 53.2 0.8 22 48-69 14-35 (218)
449 2atx_A Small GTP binding prote 96.1 0.0022 7.5E-08 50.6 2.1 22 47-68 20-41 (194)
450 2x77_A ADP-ribosylation factor 96.1 0.0019 6.6E-08 50.7 1.7 22 47-68 24-45 (189)
451 2v3c_C SRP54, signal recogniti 96.1 0.00081 2.8E-08 61.1 -0.6 41 40-80 92-134 (432)
452 2yc2_C IFT27, small RAB-relate 96.1 0.0013 4.3E-08 52.3 0.6 22 47-68 22-43 (208)
453 2orw_A Thymidine kinase; TMTK, 96.0 0.0037 1.3E-07 49.9 3.3 51 178-233 76-137 (184)
454 2hf9_A Probable hydrogenase ni 96.0 0.0031 1.1E-07 51.1 2.9 24 46-69 39-62 (226)
455 3foz_A TRNA delta(2)-isopenten 96.0 0.0036 1.2E-07 54.4 3.4 25 45-69 10-34 (316)
456 3cpj_B GTP-binding protein YPT 96.0 0.003 1E-07 51.2 2.4 23 47-69 15-37 (223)
457 2hup_A RAS-related protein RAB 95.9 0.0028 9.4E-08 50.7 2.1 23 47-69 31-53 (201)
458 3sr0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 50.5 3.2 22 47-68 2-23 (206)
459 3q3j_B RHO-related GTP-binding 95.9 0.0034 1.2E-07 50.8 2.4 22 47-68 29-50 (214)
460 2v1u_A Cell division control p 95.9 0.0039 1.3E-07 54.3 2.9 28 43-70 42-69 (387)
461 4gzl_A RAS-related C3 botulinu 95.8 0.0041 1.4E-07 49.8 2.7 21 47-67 32-52 (204)
462 4hlc_A DTMP kinase, thymidylat 95.8 0.0052 1.8E-07 50.0 3.2 26 45-70 2-27 (205)
463 2chg_A Replication factor C sm 95.8 0.0048 1.7E-07 49.0 2.9 42 178-220 102-143 (226)
464 2j0v_A RAC-like GTP-binding pr 95.8 0.0036 1.2E-07 50.1 2.1 22 47-68 11-32 (212)
465 3eph_A TRNA isopentenyltransfe 95.7 0.0048 1.7E-07 55.5 3.0 24 46-69 3-26 (409)
466 3syl_A Protein CBBX; photosynt 95.7 0.0058 2E-07 52.0 3.4 26 44-69 66-91 (309)
467 1puj_A YLQF, conserved hypothe 95.7 0.007 2.4E-07 51.7 3.7 29 46-74 121-149 (282)
468 1wxq_A GTP-binding protein; st 95.6 0.0057 2E-07 54.8 2.9 41 139-184 181-221 (397)
469 2hjg_A GTP-binding protein ENG 95.6 0.0054 1.9E-07 55.4 2.7 22 47-68 5-26 (436)
470 3r7w_A Gtpase1, GTP-binding pr 95.5 0.0082 2.8E-07 51.7 3.7 22 47-68 5-26 (307)
471 3pvs_A Replication-associated 95.5 0.0035 1.2E-07 57.1 1.4 36 36-71 39-76 (447)
472 2qgz_A Helicase loader, putati 95.5 0.008 2.7E-07 51.9 3.5 25 45-69 152-176 (308)
473 1d2n_A N-ethylmaleimide-sensit 95.5 0.0067 2.3E-07 50.9 2.9 25 44-68 63-87 (272)
474 3th5_A RAS-related C3 botulinu 94.5 0.0023 7.9E-08 51.0 0.0 22 47-68 32-53 (204)
475 1ofh_A ATP-dependent HSL prote 95.5 0.0076 2.6E-07 51.0 3.2 25 45-69 50-74 (310)
476 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0082 2.8E-07 52.0 3.5 27 43-69 43-69 (322)
477 3p32_A Probable GTPase RV1496/ 95.4 0.0078 2.7E-07 52.9 3.2 26 44-69 78-103 (355)
478 3uk6_A RUVB-like 2; hexameric 95.4 0.0079 2.7E-07 52.4 3.2 35 44-78 69-103 (368)
479 3l0i_B RAS-related protein RAB 95.4 0.0014 4.9E-08 52.1 -1.4 24 47-70 35-58 (199)
480 3hws_A ATP-dependent CLP prote 95.4 0.0081 2.8E-07 52.7 3.2 26 44-69 50-75 (363)
481 3t15_A Ribulose bisphosphate c 95.4 0.0087 3E-07 51.1 3.3 26 44-69 35-60 (293)
482 2x2e_A Dynamin-1; nitration, h 95.4 0.0057 1.9E-07 53.7 2.1 23 47-69 33-55 (353)
483 2bjv_A PSP operon transcriptio 95.4 0.012 4E-07 49.1 4.0 28 43-70 27-54 (265)
484 2qby_B CDC6 homolog 3, cell di 95.3 0.0094 3.2E-07 52.1 3.4 25 45-69 45-69 (384)
485 3d8b_A Fidgetin-like protein 1 95.3 0.01 3.6E-07 52.1 3.7 27 43-69 115-141 (357)
486 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.0084 2.9E-07 52.4 3.0 28 40-67 118-145 (331)
487 3gj0_A GTP-binding nuclear pro 95.3 0.0045 1.5E-07 50.0 1.1 40 168-207 166-210 (221)
488 3eie_A Vacuolar protein sortin 95.3 0.011 3.7E-07 51.1 3.6 25 44-68 50-74 (322)
489 1lw7_A Transcriptional regulat 95.3 0.0075 2.6E-07 53.1 2.6 30 159-188 295-329 (365)
490 3ec1_A YQEH GTPase; atnos1, at 95.3 0.0077 2.6E-07 53.4 2.6 25 44-68 161-185 (369)
491 1m8p_A Sulfate adenylyltransfe 95.2 0.01 3.4E-07 55.8 3.3 27 43-69 394-420 (573)
492 1lnz_A SPO0B-associated GTP-bi 95.2 0.011 3.7E-07 52.0 3.4 33 36-68 149-181 (342)
493 1x6v_B Bifunctional 3'-phospho 95.2 0.0099 3.4E-07 56.4 3.3 39 44-83 51-91 (630)
494 1xp8_A RECA protein, recombina 95.2 0.011 3.9E-07 52.3 3.5 27 41-67 70-96 (366)
495 3co5_A Putative two-component 95.2 0.0062 2.1E-07 46.2 1.6 38 179-217 76-114 (143)
496 3gmt_A Adenylate kinase; ssgci 95.2 0.01 3.6E-07 49.2 3.0 21 47-67 10-30 (230)
497 2qpt_A EH domain-containing pr 95.2 0.0087 3E-07 55.9 2.8 24 46-69 66-89 (550)
498 2qen_A Walker-type ATPase; unk 95.2 0.012 4.1E-07 50.4 3.5 25 44-68 30-54 (350)
499 1g8f_A Sulfate adenylyltransfe 95.2 0.01 3.5E-07 55.0 3.1 29 43-71 393-421 (511)
500 1g5t_A COB(I)alamin adenosyltr 95.1 0.014 4.7E-07 47.3 3.5 76 166-241 106-186 (196)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-62 Score=418.11 Aligned_cols=224 Identities=25% Similarity=0.372 Sum_probs=185.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.......
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999999999999998754321110011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++||+||++. +++.+||+||+.++...............+++.++++.+++.+...++++.+|||||||||+||||
T Consensus 81 ~~~~i~~v~Q~~~-l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 81 RRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHEEEECTTCC-CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhccEEEEecCCc-cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1346999999984 677889999998852111000111233455678899999998743599999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+|||+.++..++++|++++ + ++|||+||||++. ..+||++++|++|+++.++.
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999985 3 7999999999996 47999999999999988754
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.6e-62 Score=425.96 Aligned_cols=222 Identities=30% Similarity=0.461 Sum_probs=189.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+++|+++||+++|+++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 4 ~~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~--~~~ 80 (275)
T 3gfo_A 4 EDYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK--GIM 80 (275)
T ss_dssp CCEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH--HHH
T ss_pred cCcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc--cHH
Confidence 35689999999999753 459999999999999999999999999999999999999999999999998742100 001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++||||||+|...++..||+||+.++...... ...+..+++.++++.+||.+. .++++.+|||||||||+|||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCCcccCCHHHHHHHHHHH
Confidence 12467999999985445578999999987322111 123445678899999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.++++|++++ + ++|||+||||++++..+|||+++|++|+++.++.
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999986 4 7999999999999999999999999999997653
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3e-62 Score=437.76 Aligned_cols=223 Identities=24% Similarity=0.410 Sum_probs=190.7
Q ss_pred CcceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
..+||+++||+++|+++ ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999642 3469999999999999999999999999999999999999999999999999865321110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
. ..+++||||||++. +++.+||+||+.++...... ...+..+++.++++.+||.+. .+++|.+|||||||||+|
T Consensus 101 ~-~~r~~Ig~v~Q~~~-l~~~~TV~env~~~~~~~~~---~~~~~~~~v~~lL~~vgL~~~-~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 101 T-KARRQIGMIFQHFN-LLSSRTVFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDK-HDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp H-HHHTTEEEECSSCC-CCTTSCHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCGGG-TTCCTTTSCHHHHHHHHH
T ss_pred H-HHhCcEEEEeCCCc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHH
Confidence 0 12467999999985 77889999999986321111 133445678899999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||+|||+.++..++++|++++ + +.|||+||||++++..+||||++|++|+++.++.
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999996 3 6899999999999999999999999999998653
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.1e-61 Score=428.42 Aligned_cols=218 Identities=29% Similarity=0.421 Sum_probs=188.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+|+|++ .++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...... ....
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~--~~~~ 78 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN--LPVR 78 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB--CCGG
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc--cchh
Confidence 37999999999964 5799999999999999999999999999999999999999999999999987432111 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.|+....... ..+..+++.++++.++|.+. ++++|.+|||||||||+|||||
T Consensus 79 ~r~ig~vfQ~~~-l~p~ltV~eni~~~l~~~~~~---~~~~~~~v~~~l~~~gL~~~-~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 79 ERRLGYLVQEGV-LFPHLTVYRNIAYGLGNGKGR---TAQERQRIEAMLELTGISEL-AGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp GSCCEEECTTCC-CCTTSCHHHHHHTTSTTSSCC---SHHHHHHHHHHHHHHTCGGG-TTSCGGGSCHHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCc-CCCCCCHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHH
Confidence 467999999984 788899999999974322111 22345578899999999975 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||+|||+..+.++++.|.++. + +.|+|+||||++++..+||||++|++|+++..+.
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTAS 222 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999888764 3 6899999999999999999999999999987653
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-60 Score=429.92 Aligned_cols=212 Identities=29% Similarity=0.443 Sum_probs=188.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~------~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP------AE 74 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG------GG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH------HH
Confidence 6999999999964 579999999999999999999999999999999999999999999999999864322 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.||||||++. +|+.+||+||+.|+...... .+.+..+++.++++.++|.+. ++++|.+|||||||||+|||||+
T Consensus 75 r~ig~VfQ~~~-l~p~ltV~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 75 RGVGMVFQSYA-LYPHLSVAENMSFGLKLAGA---KKEVINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp SCEEEECTTCC-CCTTSCHHHHHTHHHHHTTC---CHHHHHHHHHHHHHHTTCGGG-TTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCc-CCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhHCCHHHHHHHHHHHHHH
Confidence 67999999984 78899999999997321111 133455678899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..+.++++.|+++. + +.|+|+||||++++..+||||++|++|+++..+
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999985 3 799999999999999999999999999998764
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.7e-61 Score=405.51 Aligned_cols=218 Identities=30% Similarity=0.425 Sum_probs=184.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.......+
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999964 5799999999999999999999999999999999999999999999999987432110000011
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+||.||+.++.... .. ......+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHY-LIPELTALENVIVPMLKM-GK--PKKEAKERGEYLLSELGLGDK-LSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCC-CCTTSCHHHHHHHHHHHT-TC--CHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcc-cCCCCCHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHH
Confidence 256999999984 677889999998852111 11 112334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++ .+||++++|++|+++.++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999864 68999999999987 899999999999998765
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.7e-60 Score=409.65 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=185.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. .+... ...++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~~~-~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKDTN-LNKVR 99 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STTCC-HHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccccc-HHHHh
Confidence 6999999999964 56999999999999999999999999999999999999999999999999874 11110 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++|||||++. +++.+||+||+.++....... ......+++.++++.+++.+. +++++.+|||||||||+|||||+
T Consensus 100 ~~i~~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 100 EEVGMVFQRFN-LFPHMTVLNNITLAPMKVRKW--PREKAEAKAMELLDKVGLKDK-AHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHEEEECSSCC-CCTTSCHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEeCCCc-CCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHCCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 57999999984 677889999998852111111 122234567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+||++++|++|+++..+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.7e-60 Score=422.47 Aligned_cols=217 Identities=30% Similarity=0.469 Sum_probs=189.5
Q ss_pred cCCcceEEEEeEEEEC-CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC
Q 035832 12 SCDYSCLEVRDVSYRP-PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 12 ~~~~~~l~~~~l~~~y-~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 90 (245)
.++.++|+++||+++| ++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+
T Consensus 9 ~~~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--- 83 (355)
T 1z47_A 9 HHGSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--- 83 (355)
T ss_dssp --CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---
T ss_pred cCCCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---
Confidence 4678899999999999 53 46999999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..++++|||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+
T Consensus 84 ---~~~r~ig~v~Q~~~-l~~~ltv~eni~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~-~~r~~~~LSGGq~QRva 155 (355)
T 1z47_A 84 ---PQKRNVGLVFQNYA-LFQHMTVYDNVSFGLREKRV---PKDEMDARVRELLRFMRLESY-ANRFPHELSGGQQQRVA 155 (355)
T ss_dssp ---GGGSSEEEECGGGC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHH
T ss_pred ---hhhCcEEEEecCcc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHH
Confidence 12467999999984 77889999999986321111 123345678899999999875 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+..++++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999853 689999999999999999999999999998654
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.6e-60 Score=408.46 Aligned_cols=216 Identities=26% Similarity=0.371 Sum_probs=187.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|+++.|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 8 ~~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~----~ 81 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP----K 81 (266)
T ss_dssp CCCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH----H
T ss_pred CcceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH----H
Confidence 3468999999999964 579999999999999999999999999999999999999999999999998754321 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. +++.+||.||+.++..... . ....+++.++++.+++.+. .++++.+|||||||||+|||
T Consensus 82 ~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~QRv~iAr 154 (266)
T 4g1u_C 82 ALARTRAVMRQYSE-LAFPFSVSEVIQMGRAPYG-G----SQDRQALQQVMAQTDCLAL-AQRDYRVLSGGEQQRVQLAR 154 (266)
T ss_dssp HHHHHEEEECSCCC-CCSCCBHHHHHHGGGTTSC-S----TTHHHHHHHHHHHTTCSTT-TTSBGGGCCHHHHHHHHHHH
T ss_pred HHhheEEEEecCCc-cCCCCCHHHHHHhhhhhcC-c----HHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHHHHH
Confidence 12457999999985 5567899999998732211 1 1223467889999999875 79999999999999999999
Q ss_pred HHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQ------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+. +|++|||||||+|||+.++..++++|+++++ + +|||+||||++++..+|||+++|++|+++..+.
T Consensus 155 aL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 155 VLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999 9999999999999999999999999999863 3 799999999999999999999999999987653
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-60 Score=403.56 Aligned_cols=218 Identities=23% Similarity=0.373 Sum_probs=185.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+..+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 2 ~~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~ 76 (240)
T 1ji0_A 2 VSDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA---H 76 (240)
T ss_dssp CCSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---H
T ss_pred CCCceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH---H
Confidence 34568999999999964 579999999999999999999999999999999999999999999999998743211 0
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..+++++||+||++. +++.+||.||+.++..... . .....+.+.++++.++ +.+. .++++.+|||||||||+|
T Consensus 77 ~~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~~-~---~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 77 VINRMGIALVPEGRR-IFPELTVYENLMMGAYNRK-D---KEGIKRDLEWIFSLFPRLKER-LKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp HHHHTTEEEECSSCC-CCTTSBHHHHHHGGGTTCC-C---SSHHHHHHHHHHHHCHHHHTT-TTSBSSSSCHHHHHHHHH
T ss_pred HHHhCCEEEEecCCc-cCCCCcHHHHHHHhhhcCC-C---HHHHHHHHHHHHHHcccHhhH-hcCChhhCCHHHHHHHHH
Confidence 011345999999984 6777899999998631111 1 1122345678899994 8765 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|++++ +++|||++|||++++..+||++++|++|+++..+
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 221 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999986 4689999999999999999999999999998754
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.5e-60 Score=407.89 Aligned_cols=220 Identities=23% Similarity=0.378 Sum_probs=186.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~ 79 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP---AEL 79 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---HHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHH
Confidence 457999999999964 569999999999999999999999999999999999999999999999998743211 001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCC-CCCch---------hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPR-QSGSI---------QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~-~~~~~---------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.++++||+||++. +++.+||.||+.++... ..... .......+++.++++.+|+++. .++++.+||||
T Consensus 80 ~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCG-GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHH
T ss_pred HhCCEEEEccCCc-cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-hCCCchhCCHH
Confidence 2356999999984 66778999999986321 11100 0012234567889999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+||++++|++|+++.++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999999999865 689999999999999999999999999998764
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-59 Score=419.42 Aligned_cols=212 Identities=31% Similarity=0.447 Sum_probs=187.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP------KY 74 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------GG
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh------hh
Confidence 6999999999964 569999999999999999999999999999999999999999999999998854321 14
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++|||||++. +|+.+||+||+.|+.... .. ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 75 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~-~~--~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSgGq~QRvalArAL~ 149 (359)
T 2yyz_A 75 REVGMVFQNYA-LYPHMTVFENIAFPLRAR-RI--SKDEVEKRVVEIARKLLIDNL-LDRKPTQLSGGQQQRVALARALV 149 (359)
T ss_dssp TTEEEECSSCC-CCTTSCHHHHHHGGGSSS-CS--HHHHTTHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 67999999984 778899999999974321 11 122334568899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 216 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.3e-60 Score=406.61 Aligned_cols=221 Identities=29% Similarity=0.389 Sum_probs=185.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC---------
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG--------- 85 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--------- 85 (245)
.+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 457999999999964 579999999999999999999999999999999999999999999999988741
Q ss_pred -CCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 -EPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 -~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.+... ....++++|||||++. +++.+||+||+.++....... ......+++.++++.+|+.+..+++++.+||||
T Consensus 82 ~~~~~~-~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 82 VADKNQ-LRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGL--SKHDARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp ESCHHH-HHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred ccChhh-HHHHhcceEEEecCcc-cCCCCcHHHHHHhhHHHhcCC--CHHHHHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 00000 0012457999999974 677889999998852111111 122334567889999999863159999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999999998764
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-59 Score=419.12 Aligned_cols=212 Identities=31% Similarity=0.458 Sum_probs=186.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP------KD 74 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------GG
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH------hH
Confidence 5999999999964 469999999999999999999999999999999999999999999999998854321 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+...... ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 75 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 75 RNVGLVFQNWA-LYPHMTVYKNIAFPLELRKA---PREEIDKKVREVAKMLHIDKL-LNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp TTEEEECTTCC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchH-hhCChhhCCHHHHHHHHHHHHHH
Confidence 67999999985 77889999999987321111 123345578899999999885 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..+.++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 216 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.3e-59 Score=418.80 Aligned_cols=213 Identities=27% Similarity=0.425 Sum_probs=182.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~ 81 (372)
T 1v43_A 10 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP------K 81 (372)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------G
T ss_pred eeEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh------h
Confidence 36999999999964 569999999999999999999999999999999999999999999999998754321 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+|||||
T Consensus 82 ~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 82 DRNISMVFQSYA-VWPHMTVYENIAFPLKIKKF---PKDEIDKRVRWAAELLQIEEL-LNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp GGTEEEEEC-------CCCHHHHHHTTCC--CC---CHHHHHHHHHHHHHHTTCGGG-TTSCTTTCCSSCHHHHHHHHHH
T ss_pred hCcEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHH
Confidence 467999999984 77889999999997432111 123345578899999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999853 689999999999999999999999999998654
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-59 Score=402.99 Aligned_cols=217 Identities=29% Similarity=0.363 Sum_probs=185.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+-+++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 11 ~~~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~----- 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP----- 83 (256)
T ss_dssp ---CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----
T ss_pred ccCCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-----
Confidence 44668999999999964 57999999999999999999999999999999999999999999999999874311
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..+++++||+||++. +++.+||+||+.++.... .. ......+++.++++.+|+.+. .++++.+|||||||||+||
T Consensus 84 ~~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 84 HEVRKLISYLPEEAG-AYRNMQGIEYLRFVAGFY-AS--SSSEIEEMVERATEIAGLGEK-IKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp HHHHTTEEEECTTCC-CCTTSBHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHHCCGGG-GGSBGGGCCHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCC-CCCCCcHHHHHHHHHHHc-CC--ChHHHHHHHHHHHHHCCCchH-hcCChhhCCHHHHHHHHHH
Confidence 112467999999985 667789999998752110 00 112234567889999999875 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g 228 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 228 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999864 689999999999999999999999999998754
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.9e-59 Score=418.39 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=187.3
Q ss_pred eEEEEeEEEECCCCccc--eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|++ ++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++........ ..
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~-~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV-PP 79 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS-CG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC-Ch
Confidence 6999999999963 56 9999999999999999999999999999999999999999999999998743110000 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++|||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+||||
T Consensus 80 ~~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 80 EDRKIGMVFQTWA-LYPNLTAFENIAFPLTNMKM---SKEEIRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GGSCEEEEETTSC-CCTTSCHHHHHHGGGTTSSC---CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHH
T ss_pred hhCCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 77889999999997432111 123345578899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+..++++++.|+++. + +.|+|++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999985 3 689999999999999999999999999998754
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.7e-59 Score=418.96 Aligned_cols=218 Identities=27% Similarity=0.404 Sum_probs=186.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++............+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6999999999964 56999999999999999999999999999999999999999999999999874310000000124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+...... ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 81 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 81 RDIAMVFQSYA-LYPHMTVYDNIAFPLKLRKV---PRQEIDQRVREVAELLGLTEL-LNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp SSEEEECSCCC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHTCGGG-TTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchH-hcCCcccCCHHHHHHHHHHHHHh
Confidence 67999999985 77889999999987321111 123345578899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998754
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-58 Score=393.24 Aligned_cols=207 Identities=29% Similarity=0.449 Sum_probs=181.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~ 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP------PER 69 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC------TTT
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc------hhh
Confidence 4899999999953 49999999999 999999999999999999999999999999999999875321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++||+||++. +++.+||+||+.++... .. . .. ..+++.++++.+|+.+. .++++.+|||||||||+|||||+
T Consensus 70 ~~i~~v~q~~~-l~~~ltv~enl~~~~~~-~~-~--~~-~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 70 RGIGFVPQDYA-LFPHLSVYRNIAYGLRN-VE-R--VE-RDRRVREMAEKLGIAHL-LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp SCCBCCCSSCC-CCTTSCHHHHHHTTCTT-SC-H--HH-HHHHHHHHHHTTTCTTT-TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCc-cCCCCcHHHHHHHHHHH-cC-C--ch-HHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 67999999984 67778999999986321 11 1 11 24567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|++++ + ++|||++|||++++..+||++++|++|+++..+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999985 3 789999999999999999999999999998754
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.8e-59 Score=414.56 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=183.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ + +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ..+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~------~~~ 71 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS------PEK 71 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC------HHH
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc------hhh
Confidence 5899999999964 4 899999999999999999999999999999999999999999999999875321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+....... . . +++.++++.++|++. +++++.+|||||||||+|||||+
T Consensus 72 r~ig~v~Q~~~-l~~~ltv~enl~~~~~~~~~~---~-~--~~v~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 72 HDIAFVYQNYS-LFPHMNVKKNLEFGMRMKKIK---D-P--KRVLDTARDLKIEHL-LDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp HTCEEECTTCC-CCTTSCHHHHHHHHHHHHCCC---C-H--HHHHHHHHHTTCTTT-TTSCGGGSCHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHHcCCC---H-H--HHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 57999999984 778899999999863210000 1 1 467889999999885 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g 210 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-58 Score=400.42 Aligned_cols=213 Identities=37% Similarity=0.557 Sum_probs=183.3
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||+++||+++|+.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~------- 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY------- 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-------
Confidence 699999999996212 4699999999999999999999999999999999999999999999999886421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC--CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD--GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+++++||+||++...++..||.||+.++.... .. .....+++.++++.+|+. +. .++++.+|||||||||+|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YP---DRDPVPLVKKAMEFVGLDFDSF-KDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CT---TSCSHHHHHHHHHHTTCCHHHH-TTCCGGGSCHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CC---HHHHHHHHHHHHHHcCcCCccc-ccCChhhCCHHHHHHHHH
Confidence 124679999999633456789999999863221 11 111234577889999998 75 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|++++ ++.|||++|||++++..+||++++|++|+++..+
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999986 4689999999999999999999999999998654
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-58 Score=402.06 Aligned_cols=221 Identities=26% Similarity=0.401 Sum_probs=183.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC--CCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND--GEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~ 91 (245)
..++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 18 ~~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~--- 92 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA--- 92 (279)
T ss_dssp -CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH---
T ss_pred CCceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH---
Confidence 3457999999999964 57999999999999999999999999999999999999999999999998874 2110
Q ss_pred CCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
..++++|||+||++...+. .+||+||+.++........ .......+++.++++.+|+.+. +++++.+|||||||||
T Consensus 93 -~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 93 -ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-AQQYIGYLSTGEKQRV 170 (279)
T ss_dssp -HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHH
T ss_pred -HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHH
Confidence 1124679999999743232 4699999998632100000 0012234567889999999875 7999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceE--EEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTI--LVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~ti--ii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|| |++|||++++..+||++++|++|+++..+
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999864 7899 99999999999999999999999998754
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.6e-58 Score=395.78 Aligned_cols=219 Identities=26% Similarity=0.368 Sum_probs=180.6
Q ss_pred cceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+|+++||+++|++ ..+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~----~ 89 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH----H 89 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH----H
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH----H
Confidence 347999999999964 12469999999999999999999999999999999999999999999999998743211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.++++||||||++. +|. .||+||+.++.......... .......+.++++.+ |+... .++++.+|||||||||+
T Consensus 90 ~~~~~i~~v~Q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~-~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 90 YLHTQVAAVGQEPL-LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE-VGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHHHEEEECSSCC-CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB-CCGGGTTSCHHHHHHHH
T ss_pred HHhccEEEEecCCc-ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh-hcCCcCCCCHHHHHHHH
Confidence 12457999999984 454 69999999874321110111 111123356778888 78765 68999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++.+ ++|||+||||++++. .||++++|++|+++..+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999854 689999999999886 59999999999998754
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.4e-57 Score=388.07 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=172.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||+++|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~----~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP----NWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHH
Confidence 489999999994223569999999999999999999999999999999999999999999999998753211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++|||+||++. +| ..||+||+.++... .. . +++.++++.+++ +.. .++++.+|||||
T Consensus 83 ~~i~~v~Q~~~-l~-~~tv~enl~~~~~~--~~---~----~~~~~~l~~~~l~~~~~~~~~gl~~~-~~~~~~~LSgGq 150 (247)
T 2ff7_A 83 RQVGVVLQDNV-LL-NRSIIDNISLANPG--MS---V----EKVIYAAKLAGAHDFISELREGYNTI-VGEQGAGLSGGQ 150 (247)
T ss_dssp HHEEEECSSCC-CT-TSBHHHHHTTTCTT--CC---H----HHHHHHHHHHTCHHHHHTSTTGGGCB-CSTTTTCCCHHH
T ss_pred hcEEEEeCCCc-cc-cccHHHHHhccCCC--CC---H----HHHHHHHHHhChHHHHHhCcchhhhh-hhCCCCCCCHHH
Confidence 57999999985 44 46999999986321 11 1 123334444444 332 466789999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999876799999999999875 59999999999998754
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.7e-57 Score=398.30 Aligned_cols=217 Identities=25% Similarity=0.362 Sum_probs=177.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++||+|+|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~----~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ----ASL 126 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH----HHH
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH----HHH
Confidence 359999999999643 579999999999999999999999999999999999999999999999999864321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++||||||++. +| ..||+||+.++..... ...... .....+.+.++.+ |++.. .++++.+|||||||||+||
T Consensus 127 r~~i~~v~Q~~~-lf-~~Tv~eNi~~~~~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~-~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 127 RSHIGVVPQDTV-LF-NDTIADNIRYGRVTAG-NDEVEAAAQAAGIHDAIMAFPEGYRTQ-VGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp HHTEEEECSSCC-CC-SEEHHHHHHTTSTTCC-HHHHHHHHHHHTCHHHHHHSTTGGGCE-ESTTSBCCCHHHHHHHHHH
T ss_pred hcceEEEecCCc-cC-cccHHHHHHhhcccCC-HHHHHHHHHHhCcHHHHHhccchhhhH-hcCCcCCCCHHHHHHHHHH
Confidence 567999999984 44 6799999999743211 100000 0111123334443 55543 5788899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||++||+.+...+++.|+++.+++|+|+|||+++.+.. ||+|++|++|+++..+.
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~ 271 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGR 271 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEEC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999878999999999999876 99999999999987653
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-56 Score=384.73 Aligned_cols=205 Identities=24% Similarity=0.406 Sum_probs=176.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 3 ~~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------------- 64 (253)
T 2nq2_C 3 KALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----------------- 64 (253)
T ss_dssp EEEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------------
T ss_pred ceEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------------
Confidence 37999999999962 246999999999999999999999999999999999999999999982
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||+||++. +++.+||.||+.++........ .......+++.++++.+|+.+. +++++.+|||||||||+||||
T Consensus 65 ~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 65 YQSIGFVPQFFS-SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARA 142 (253)
T ss_dssp CSCEEEECSCCC-CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHH
T ss_pred eccEEEEcCCCc-cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-hcCChhhCCHHHHHHHHHHHH
Confidence 346999999985 5667899999998632110000 0011224567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+ +..+
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g 210 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG 210 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC
Confidence 9999999999999999999999999999999864 6899999999999999999999999999 6543
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.2e-58 Score=392.86 Aligned_cols=219 Identities=24% Similarity=0.304 Sum_probs=177.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.. ..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~---~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD---ER 77 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHH---HH
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHH---HH
Confidence 7999999999964 5799999999999999999999999999999999999 789999999999987532210 01
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCC-CChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHS-LSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~-LSgGqkqrv~iA 172 (245)
.+..++|+||++. +++.+||.||+.++...............+++.++++.+|++ +. .++++.+ |||||||||+||
T Consensus 78 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 78 ARKGLFLAFQYPV-EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-LSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHTTBCCCCCCCC--CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-GGSBTTCC----HHHHHHHH
T ss_pred HhCcEEEeccCCc-cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-hcCCcccCCCHHHHHHHHHH
Confidence 1245899999985 667889999998752100000000112245678899999995 54 6899999 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+ ||++++|++|+++..+.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999864 68999999999999888 59999999999987643
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4e-57 Score=390.88 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=180.8
Q ss_pred CCCCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCC
Q 035832 7 RAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNND 84 (245)
Q Consensus 7 ~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~ 84 (245)
.+|-...+.+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++.
T Consensus 10 ~~~~~~~~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 10 SSGLVPRGSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp ----------CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred cCCCcCCCCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 34444455678999999999964 5799999999999999999999999999999999999 4689999999999874
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCC----CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPR----QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH- 159 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 159 (245)
..... ...+..++|+||++. +++.+|+.+|+.+.... ............+++.++++.+|+.....++++.
T Consensus 88 ~~~~~---~~~~~~i~~v~Q~~~-l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 88 ALSPE---DRAGEGIFMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp GSCHH---HHHHHTEEEECSSCC-CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred cCCHH---HHhhCCEEEEccCcc-ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 32110 011235999999985 67788999998764200 0000001122345678899999996323688887
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGF 237 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i 237 (245)
+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+ ||++++|++|++
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 5999999999999999999999999999999999999999999999864 68999999999998876 999999999999
Q ss_pred EEecc
Q 035832 238 LVEQR 242 (245)
Q Consensus 238 ~~~~~ 242 (245)
+..+.
T Consensus 244 ~~~g~ 248 (267)
T 2zu0_C 244 VKSGD 248 (267)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 87654
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-56 Score=382.77 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=175.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++
T Consensus 1 ml~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL----ENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC----SCCT
T ss_pred CEEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHH
Confidence 5899999999943 2569999999999999999999999999999999999999999999999998754321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCC-----------CCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLD-----------KDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq 165 (245)
+++||+||++. +|. .||+||+.++.... .. .+++.++++.+++.+. .+ +++.+|||||
T Consensus 76 ~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-------~~~~~~~l~~~~l~~~-~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 76 SQIGFVSQDSA-IMA-GTIRENLTYGLEGD-YT-------DEDLWQVLDLAFARSF-VENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp TTCCEECCSSC-CCC-EEHHHHTTSCTTSC-SC-------HHHHHHHHHHHTCTTT-TTSSTTGGGCEESTTSBCCCHHH
T ss_pred hhEEEEcCCCc-ccc-ccHHHHHhhhccCC-CC-------HHHHHHHHHHhChHHH-HHhCccchhchhccCcCcCCHHH
Confidence 67999999984 454 69999999863111 11 1235667778887654 33 4567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSG 219 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCS
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876789999999999875 69999999999997643
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-56 Score=382.56 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=179.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++..... ..+
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~----~~~ 71 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSA----TKL 71 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCH----HHH
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCH----HHH
Confidence 37999999986 4799999999999999999999999999999999999999 999999988743211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+||+||+.++... .. . .+++.++++.+|+.+. +++++.+|||||||||+|||||
T Consensus 72 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~--~~-~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 72 ALHRAYLSQQQT-PPFATPVWHYLTLHQHD--KT-R-----TELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp HHHEEEECSCCC-CCTTCBHHHHHHTTCSS--TT-C-----HHHHHHHHHHTTCGGG-TTSBGGGCCHHHHHHHHHHHHH
T ss_pred hceEEEECCCCc-cCCCCcHHHHHHHhhcc--CC-c-----HHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHH
Confidence 457999999985 56778999999986311 11 1 3457788999999875 7999999999999999999999
Q ss_pred hhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPD-------LLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~-------llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+ +|||||||+|||+.+++.++++|+++. +++|||++|||++++..+||++++|++|+++..+
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999 999999999999999999999999986 4689999999999999999999999999998754
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.7e-55 Score=379.24 Aligned_cols=209 Identities=24% Similarity=0.371 Sum_probs=172.4
Q ss_pred ceEEEEeEEEECCCCc-cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQ-VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~----~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR----NS 90 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCH----HH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCH----HH
Confidence 4699999999997431 4699999999999999999999999999999999999987 8999999988743211 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGG 164 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 164 (245)
++++|||+||++. +| ..||+||+.++... .. . +++.++++.+++.+. ..++++.+||||
T Consensus 91 ~~~~i~~v~Q~~~-l~-~~tv~enl~~~~~~--~~---~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTI-LF-NETIKYNILYGKLD--AT---D----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCC-CC-SEEHHHHHHTTCTT--CC---H----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred HhccEEEEcCCCc-cc-ccCHHHHHhccCCC--CC---H----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 2467999999985 44 46999999986321 11 1 123445555554321 135678999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976789999999999875 59999999999998754
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-56 Score=374.69 Aligned_cols=202 Identities=21% Similarity=0.214 Sum_probs=173.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~------- 75 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--K------- 75 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--G-------
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--h-------
Confidence 457999999999963 6999999999999999999999999999999999999999999999998763 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.++|+||++. +++.+||.||+.++........ . .+++.++++.+|+++ . ++++.+|||||||||+||||
T Consensus 76 ~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~~~----~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 76 VKGKIFFLPEEII-VPRKISVEDYLKAVASLYGVKV----N-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp GGGGEEEECSSCC-CCTTSBHHHHHHHHHHHTTCCC----C-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHH
T ss_pred hcCcEEEEeCCCc-CCCCCCHHHHHHHHHHhcCCch----H-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHH
Confidence 2567999999985 5677899999988521100000 1 235678899999986 4 88999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||+++++. |+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999864 6899999999999999999988765 555
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.7e-55 Score=376.98 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=176.8
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++. .+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~------~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI------RN 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC------SC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch------HH
Confidence 58999999999631 1469999999999 9999999999999999999999999 9999999999887431 12
Q ss_pred CCCcEE-EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVG-IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
++++| |+||++. + .+|+.||+.++.... . ...+++.++++.+++. +. +++++.+|||||||||+||
T Consensus 73 -~~~i~~~v~Q~~~--l-~~tv~enl~~~~~~~-~------~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 73 -YIRYSTNLPEAYE--I-GVTVNDIVYLYEELK-G------LDRDLFLEMLKALKLGEEI-LRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp -CTTEEECCGGGSC--T-TSBHHHHHHHHHHHT-C------CCHHHHHHHHHHTTCCGGG-GGSBGGGSCHHHHHHHHHH
T ss_pred -hhheEEEeCCCCc--c-CCcHHHHHHHhhhhc-c------hHHHHHHHHHHHcCCChhH-hcCChhhCCHHHHHHHHHH
Confidence 46799 9999984 3 789999998852100 0 1123577889999998 75 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc-EEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD-HSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d-~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||++||+.+++.++++|+++++ |||++|||++++..+|| ++++|++|+++..+
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEE
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEec
Confidence 999999999999999999999999999999999865 99999999999999999 99999999998754
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-54 Score=368.44 Aligned_cols=201 Identities=23% Similarity=0.364 Sum_probs=163.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 6999999999964235799999999999999999999999999999999999999999999976
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----ccCCCCCCCCChHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----TSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgGqkqrv~iA 172 (245)
++||+||++. ++..||+||+.++... . . ..... .....++.+.+++.+ ..+++++.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~--~~~~tv~enl~~~~~~-~-~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAW--IQNDSLRENILFGCQL-E-E-PYYRS-VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCC--CCSEEHHHHHHTTSCC-C-T-THHHH-HHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCc--CCCcCHHHHhhCcccc-C-H-HHHHH-HHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 3899999984 4578999999986321 1 1 11111 111112233334321 124788999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLK---HLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~---~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.++..+++.|. ++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g 210 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMG 210 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEE
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999995 4445689999999999874 79999999999998754
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.2e-54 Score=364.15 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=161.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 36999999999963335799999999999999999999999999999999999999999999975
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++|+||++. +++ .||+||+.++... ......... ...+.+.++.+... ....++++.+|||||||||+|||
T Consensus 70 --~i~~v~q~~~-~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 70 --RISFCSQFSW-IMP-GTIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp --CEEEECSSCC-CCS-BCHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred --EEEEEecCCc-ccC-CCHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 3899999985 454 5999999986321 100000000 00111222222110 00134567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++. +.++.+++|||++|||++++. .||++++|++|+++..+
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYG 211 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEE
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999997 456655789999999999875 59999999999998754
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-55 Score=396.40 Aligned_cols=208 Identities=24% Similarity=0.267 Sum_probs=178.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++...+. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~----~~ 91 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL----EQ 91 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH----HH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh----HH
Confidence 34699999999996434579999999999999999999999999999999999998 89999999998854321 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC-----------CCh
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS-----------LSG 163 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSg 163 (245)
+++.+|||||++. +| ++||+||+.+... . ..+++.++++.++|.+. .++++.+ |||
T Consensus 92 ~rr~ig~v~Q~~~-lf-~~tv~enl~~~~~---~-------~~~~v~~~l~~~~L~~~-~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 92 WRKAFGVIPQKVF-IF-SGTFRKNLDPNAA---H-------SDQEIWKVADEVGLRSV-IEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp HHHTEEEESCCCC-CC-SEEHHHHHCTTCC---S-------CHHHHHHHHHHTTCHHH-HTTSTTGGGCEECTTTTTSCH
T ss_pred HhCCEEEEcCCcc-cC-ccCHHHHhhhccc---c-------CHHHHHHHHHHhCCHHH-HhhcccccccccccccccCCH
Confidence 2467999999984 44 4799999975311 1 12246678999999875 6899988 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+..+.++++.|+++..+.|+|++|||++.+ ..||||++|++|+++..+
T Consensus 159 GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999887679999999998754 579999999999998764
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-53 Score=400.94 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=178.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~----~~~r 416 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL----KDLR 416 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH----HHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH----HHHH
Confidence 599999999997545679999999999999999999999999999999999999999999999998854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++|||||+|. +| +.|++||+.++.+... ...... .....+.+.++.+ |++.. .++++.+||||||||++|||
T Consensus 417 ~~i~~v~Q~~~-lf-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~~~-~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 417 GHISAVPQETV-LF-SGTIKENLKWGREDAT-DDEIVEAAKIAQIHDFIISLPEGYDSR-VERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHEEEECSSCC-CC-SEEHHHHHTTTCSSCC-HHHHHHHHHHTTCHHHHHTSSSGGGCE-ECSSSCSSCHHHHHHHHHHH
T ss_pred hheEEECCCCc-Cc-CccHHHHHhccCCCCC-HHHHHHHHHHhCcHHHHHhcccchhhH-hcCCCCCcCHHHHHHHHHHH
Confidence 78999999984 44 5699999998743211 100000 0011123334443 55553 58889999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||||++|++|+++..+.
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEEC
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999877899999999999875 899999999999987653
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-52 Score=398.12 Aligned_cols=209 Identities=28% Similarity=0.423 Sum_probs=174.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~r 414 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT----GSLR 414 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH----HHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHh
Confidence 599999999997645679999999999999999999999999999999999999999999999998854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
+++|||||+|. +| +.|++||+.++.+... .. ++.++++.. |++.. .++.+.+|||||
T Consensus 415 ~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~lp~g~~t~-~~~~g~~LSgGq 482 (578)
T 4a82_A 415 NQIGLVQQDNI-LF-SDTVKENILLGRPTAT-----DE----EVVEAAKMANAHDFIMNLPQGYDTE-VGERGVKLSGGQ 482 (578)
T ss_dssp HTEEEECSSCC-CC-SSBHHHHHGGGCSSCC-----HH----HHHHHHHHTTCHHHHHTSTTGGGCB-CCGGGTTSCHHH
T ss_pred hheEEEeCCCc-cC-cccHHHHHhcCCCCCC-----HH----HHHHHHHHhCcHHHHHhCcchhhhh-hccCCCcCCHHH
Confidence 67999999984 44 5699999999743211 11 122333333 33332 456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+.+|+++||||||++||+.+.+.+.+.++++.+++|+|++|||++.+. .||++++|++|+++.++.
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGT 558 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999877899999999999875 599999999999987654
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.5e-52 Score=395.07 Aligned_cols=211 Identities=27% Similarity=0.383 Sum_probs=175.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL----TNL 415 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH----HHH
Confidence 4699999999997433579999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGY 165 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 165 (245)
++++|||||+|. +| +.|++||+.++.... .. .+++.++++.+++.+. ..++.+.+|||||
T Consensus 416 ~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~-~~-------~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 416 RRHFALVSQNVH-LF-NDTIANNIAYAAEGE-YT-------REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred hcCeEEEcCCCc-cc-cccHHHHHhccCCCC-CC-------HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 578999999984 44 469999999873111 11 1224444555544321 2455678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999877899999999999876 79999999999998764
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.2e-52 Score=395.34 Aligned_cols=210 Identities=27% Similarity=0.391 Sum_probs=175.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL----ASL 415 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH----HHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH----HHH
Confidence 3699999999997432579999999999999999999999999999999999999999999999998854321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-----------CCCccCCCCCCCCChH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-----------LDGTSLDKDPHSLSGG 164 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 164 (245)
++++|||||+|. +| +.|++||+.++.... .. . +++.++++.++ ++.. .++.+.+||||
T Consensus 416 ~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~-~~---~----~~~~~~l~~~~l~~~~~~~p~g~~~~-~~~~~~~LSgG 484 (582)
T 3b60_A 416 RNQVALVSQNVH-LF-NDTVANNIAYARTEE-YS---R----EQIEEAARMAYAMDFINKMDNGLDTI-IGENGVLLSGG 484 (582)
T ss_dssp HHTEEEECSSCC-CC-SSBHHHHHHTTTTSC-CC---H----HHHHHHHHTTTCHHHHHHSTTGGGSB-CCTTSCSSCHH
T ss_pred HhhCeEEccCCc-CC-CCCHHHHHhccCCCC-CC---H----HHHHHHHHHcCCHHHHHhcccccccc-ccCCCCCCCHH
Confidence 567999999985 44 469999999873111 11 1 12334444444 4433 46678999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999877899999999999875 79999999999998764
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-51 Score=392.18 Aligned_cols=212 Identities=30% Similarity=0.424 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
|+++|++++|+++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~----~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNP----VWLR 417 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCH----HHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCH----HHHH
Confidence 9999999999743 2469999999999999999999999999999999999999999999999998854321 1234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
+++|||||+|. +| +.|++||+.++.+... .. .++++.++++.+++.+. ..++.+.+||||||
T Consensus 418 ~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 418 SKIGTVSQEPI-LF-SCSIAENIAYGADDPS-SV-----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp HSEEEECSSCC-CC-SSBHHHHHHTTSSSTT-TS-----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred hceEEEccCCc-cc-CCCHHHHHhhcCCCcc-cc-----CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHH
Confidence 67999999985 44 4699999999743210 00 11234556666665321 13455689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++|||++.+. .||++++|++|+++..+.
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 564 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGK 564 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999977899999999999885 599999999999987653
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-52 Score=395.82 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 354 ~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~----~~~r 428 (598)
T 3qf4_B 354 EIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR----SSLR 428 (598)
T ss_dssp CEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCH----HHHH
T ss_pred eEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCH----HHHH
Confidence 5999999999975 3579999999999999999999999999999999999999999999999999854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
+++|||||+|. +| +.|++||+.++.+.... +++.++++.+++.+. ..++.+.+||||||
T Consensus 429 ~~i~~v~Q~~~-lf-~~tv~eni~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 429 SSIGIVLQDTI-LF-STTVKENLKYGNPGATD---------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHEEEECTTCC-CC-SSBHHHHHHSSSTTCCT---------THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred hceEEEeCCCc-cc-cccHHHHHhcCCCCCCH---------HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 68999999984 44 57999999987332111 112333444444322 12334579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+++..+.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999878999999999998864 99999999999987653
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.5e-50 Score=353.34 Aligned_cols=200 Identities=21% Similarity=0.335 Sum_probs=144.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------- 99 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------
Confidence 4579999999864 3689999999999999999999999999999999999999999999865
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++|+||++. +++ .||+||+. +... ......... ...+.+.++.+... ....++++.+|||||||||+||
T Consensus 100 ---~i~~v~Q~~~-l~~-~tv~enl~-~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 100 ---RISFCSQNSW-IMP-GTIKENII-GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp ---CEEEECSSCC-CCS-SBHHHHHH-TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred ---EEEEEeCCCc-cCc-ccHHHHhh-Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 3899999984 454 59999998 5311 100000000 00112222222211 0113456789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.++..+++.+ .++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g 240 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYG 240 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEE
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeC
Confidence 9999999999999999999999999999974 55555789999999999875 69999999999998654
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-48 Score=396.67 Aligned_cols=211 Identities=25% Similarity=0.383 Sum_probs=177.1
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|+++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~----~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP----EHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH----HHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH----HHH
Confidence 49999999999753 3479999999999999999999999999999999999999999999999999865432 235
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-----------CCCccCCCCCCCCChH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-----------LDGTSLDKDPHSLSGG 164 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 164 (245)
|++|+||||+|. ++..|++||+.+|....... ++++.++++..+ ++.. ......+||||
T Consensus 1152 R~~i~~V~Qdp~--LF~gTIreNI~~gld~~~~s-------d~ei~~Al~~a~l~~~I~~Lp~GldT~-vge~G~~LSgG 1221 (1321)
T 4f4c_A 1152 RSQIAIVSQEPT--LFDCSIAENIIYGLDPSSVT-------MAQVEEAARLANIHNFIAELPEGFETR-VGDRGTQLSGG 1221 (1321)
T ss_dssp HTTEEEECSSCC--CCSEEHHHHHSSSSCTTTSC-------HHHHHHHHHHTTCHHHHHTSTTTTCSE-ETTTSCSSCHH
T ss_pred HhheEEECCCCE--eeCccHHHHHhccCCCCCCC-------HHHHHHHHHHhCChHHHHcCcCCCCCE-ecCCCcccCHH
Confidence 788999999994 45789999999984321111 122334444443 3332 35566789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||++|||||+++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|+|+++.+. .||+|++|++|+|++.+.
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999888899999999999875 689999999999987654
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.8e-48 Score=394.23 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=176.1
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~----~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV----RYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCH----HHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCH----HHH
Confidence 59999999999753 3469999999999999999999999999999999999999999999999999854322 223
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++||||||+|. +| ..|++||+.++..... ...... .....+.+.++.+ |++.. ..+.+.+||||||||++||
T Consensus 463 r~~i~~v~Q~~~-l~-~~ti~eNi~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~QriaiA 538 (1284)
T 3g5u_A 463 REIIGVVSQEPV-LF-ATTIAENIRYGREDVT-MDEIEKAVKEANAYDFIMKLPHQFDTL-VGERGAQLSGGQKQRIAIA 538 (1284)
T ss_dssp HHHEEEECSSCC-CC-SSCHHHHHHHHCSSCC-HHHHHHHHHHTTCHHHHHHSTTGGGCC-CSSSSCSSCHHHHHHHHHH
T ss_pred HhheEEEcCCCc-cC-CccHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhcccccccc-ccCCCCccCHHHHHHHHHH
Confidence 568999999984 44 5699999999843211 100000 0111123344444 34432 5677889999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++||||||||+||+++.+.+.+.++.+.+++|+|+|||+++.+.. ||+|++|++|+++..+
T Consensus 539 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 539 RALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999988788999999999999865 9999999999997654
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-47 Score=390.60 Aligned_cols=213 Identities=24% Similarity=0.356 Sum_probs=178.0
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|++. +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++...+. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~----~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL----EFL 490 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH----HHH
Confidence 49999999999753 4679999999999999999999999999999999999999999999999999865432 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHH-----HHHHHHHc--CCCCccCCCCCCCCChHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALN-----LQRAINWV--GLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGqkqr 168 (245)
|++||||+|+|. +++.|++||+.+|.+... .++..+. +.+.++.+ |.+.. ......+||||||||
T Consensus 491 r~~i~~v~Q~~~--Lf~~TI~eNI~~g~~~~~-----~~~v~~a~~~a~l~~~i~~lp~G~~T~-vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 491 RKNVAVVSQEPA--LFNCTIEENISLGKEGIT-----REEMVAACKMANAEKFIKTLPNGYNTL-VGDRGTQLSGGQKQR 562 (1321)
T ss_dssp HHHEEEECSSCC--CCSEEHHHHHHTTCTTCC-----HHHHHHHHHHTTCHHHHHHSTTTTSSE-ESSSSCCCCHHHHHH
T ss_pred hhcccccCCcce--eeCCchhHHHhhhcccch-----HHHHHHHHHHccchhHHHcCCCCCccE-ecCCCCCCCHHHHHH
Confidence 678999999994 457899999999843211 1111111 12334443 44433 466788999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++||||++.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||++..+ ..||+|++|++|+|+..+.
T Consensus 563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCeeeccCC
Confidence 999999999999999999999999999999999999998899999999999976 5799999999999988653
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-47 Score=390.18 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV----QWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH----HHH
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH----HHH
Confidence 59999999999753 2469999999999999999999999999999999999999999999999999864321 224
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
++++|||||+|. ++..|++||+.++.+........ .. .....+.+.++.+ |++.. ....+.+|||||||||+|
T Consensus 1106 r~~i~~v~Q~~~--l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~-vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1106 RAQLGIVSQEPI--LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR-VGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp TTSCEEEESSCC--CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCB-CSTTSCSSCHHHHHHHHH
T ss_pred HhceEEECCCCc--cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccc-cCCCCCccCHHHHHHHHH
Confidence 678999999983 45789999999874321111100 00 0011122223222 23222 355678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+||||++.+. .||||++|++|+++..+.
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999998777899999999999985 599999999999987653
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-46 Score=357.52 Aligned_cols=198 Identities=25% Similarity=0.259 Sum_probs=169.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 354 ~~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------- 415 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------------- 415 (607)
T ss_dssp CCEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---------------
T ss_pred CceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---------------
Confidence 3568999999999964 3699999999999999999999999999999999999999999865
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++||+||++. .++..||.+++..... . .......+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 416 --~~~i~~v~Q~~~-~~~~~tv~e~~~~~~~-----~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~QRv~iAr 484 (607)
T 3bk7_A 416 --DLTVAYKPQYIK-AEYEGTVYELLSKIDS-----S--KLNSNFYKTELLKPLGIIDL-YDRNVEDLSGGELQRVAIAA 484 (607)
T ss_dssp --CCCEEEECSSCC-CCCSSBHHHHHHHHHH-----H--HHHCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHHHHHHHHH
T ss_pred --eeEEEEEecCcc-CCCCCcHHHHHHhhhc-----c--CCCHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHH
Confidence 135999999985 4467899888765200 0 00112356788999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~ 240 (245)
||+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..
T Consensus 485 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp HHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec
Confidence 9999999999999999999999999999999985 368999999999999999999999985 665544
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-47 Score=354.42 Aligned_cols=198 Identities=25% Similarity=0.265 Sum_probs=169.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 284 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------------- 345 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------------- 345 (538)
T ss_dssp CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---------------
T ss_pred CCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---------------
Confidence 4568999999999964 3699999999999999999999999999999999999999999864
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++||+||++. ..+..||.+++..... . .....+.+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 346 --~~~i~~v~Q~~~-~~~~~tv~~~~~~~~~-----~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~qrv~lAr 414 (538)
T 1yqt_A 346 --DLTVAYKPQYIK-ADYEGTVYELLSKIDA-----S--KLNSNFYKTELLKPLGIIDL-YDREVNELSGGELQRVAIAA 414 (538)
T ss_dssp --CCCEEEECSSCC-CCCSSBHHHHHHHHHH-----H--HHTCHHHHHHTTTTTTCGGG-TTSBGGGCCHHHHHHHHHHH
T ss_pred --CceEEEEecCCc-CCCCCcHHHHHHhhhc-----c--CCCHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHH
Confidence 135999999985 3467899887754200 0 00012346778999999864 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~ 240 (245)
||+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..
T Consensus 415 aL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp HHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec
Confidence 9999999999999999999999999999999985 378999999999999999999999985 666544
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-46 Score=351.23 Aligned_cols=194 Identities=20% Similarity=0.178 Sum_probs=167.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 266 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------- 329 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------- 329 (538)
T ss_dssp CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-------------
T ss_pred ccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 3567999999999964 358889999999999999999999999999999999999999998642
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++|+||+.. ..+..||.+|+.+........ ....+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 330 ---~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~~------~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 330 ---QILSYKPQRIF-PNYDGTVQQYLENASKDALST------SSWFFEEVTKRLNLHRL-LESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp ---CCEEEECSSCC-CCCSSBHHHHHHHHCSSTTCT------TSHHHHHTTTTTTGGGC-TTSBGGGCCHHHHHHHHHHH
T ss_pred ---eeeEeechhcc-cccCCCHHHHHHHhhhhccch------hHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHH
Confidence 35899999874 345689999998742211101 11235678899999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
||+.+|++|||||||+|||+.++.+++++|+++.+ +.|||+||||++++..+||||++|++
T Consensus 399 aL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999853 68999999999999999999999985
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.7e-45 Score=359.82 Aligned_cols=211 Identities=22% Similarity=0.340 Sum_probs=166.5
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 45689999999999753357899999999999999999999999999999999999999999999641
Q ss_pred CCCCcEEEEecCCCC---CCCcccHHHHHHhcCCCC--------------------------------------------
Q 035832 94 LPPEKVGIVFQFPER---YFVADNVLDEVIFGWPRQ-------------------------------------------- 126 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~---~~~~~tv~e~l~~~~~~~-------------------------------------------- 126 (245)
.++||++|++.. .....|+.+++.+.+...
T Consensus 736 ---~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~ 812 (986)
T 2iw3_A 736 ---CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFK 812 (986)
T ss_dssp ---CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEET
T ss_pred ---cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhc
Confidence 147888887421 011245555554311000
Q ss_pred ----------------------CC---------chh-----HHH------------------HHHHHHHHHHHHcCCCCc
Q 035832 127 ----------------------SG---------SIQ-----LKE------------------YLALNLQRAINWVGLDGT 152 (245)
Q Consensus 127 ----------------------~~---------~~~-----~~~------------------~~~~~~~~~l~~~~l~~~ 152 (245)
.. ... ..+ ....++.++++.+|+...
T Consensus 813 ~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~ 892 (986)
T 2iw3_A 813 NTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPE 892 (986)
T ss_dssp TEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHH
T ss_pred ccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCch
Confidence 00 000 000 012457789999999753
Q ss_pred c-CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEE
Q 035832 153 S-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 153 ~-~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++
T Consensus 893 ~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEEC
T ss_pred hhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEE
Confidence 2 47899999999999999999999999999999999999999999999998776 46999999999999999999999
Q ss_pred EeCCeEEEec
Q 035832 232 MDMGGFLVEQ 241 (245)
Q Consensus 232 l~~G~i~~~~ 241 (245)
|++|+++..+
T Consensus 971 L~~G~Iv~~G 980 (986)
T 2iw3_A 971 VKDGRMTPSG 980 (986)
T ss_dssp CBTTBCCC--
T ss_pred EECCEEEEeC
Confidence 9999987644
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.7e-45 Score=345.73 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.2
Q ss_pred CCcceEEE--------EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE--------
Q 035832 13 CDYSCLEV--------RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-------- 76 (245)
Q Consensus 13 ~~~~~l~~--------~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-------- 76 (245)
|+..+|++ +|++++|++. ..+|+++| ++++||+++|+||||||||||+|+|+|+++|++|++
T Consensus 79 ~p~~~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 79 CPFNAISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CSSCCCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred CCcceEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 45557899 8999999642 24899999 999999999999999999999999999999999995
Q ss_pred -EEcCccCCCCCCCCCCCCCCCcEEEEecCCCCC--CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 77 -NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 77 -~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
.++|.++...... ....+..+++++|+.... ....|+.||+.... . ..++.++++.+||.+.
T Consensus 157 ~~~~G~~~~~~~~~--~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-~-----------~~~~~~~L~~lgL~~~- 221 (607)
T 3bk7_A 157 RAFRGNELQNYFER--LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-E-----------VGKFEEVVKELELENV- 221 (607)
T ss_dssp HHTTTSTHHHHHHH--HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-C-----------SSCHHHHHHHTTCTTG-
T ss_pred heeCCEehhhhhhh--hhhhhcceEEeechhhhchhhccccHHHHhhhhH-H-----------HHHHHHHHHHcCCCch-
Confidence 3445433110000 000124588999875311 11238999886521 0 1135678999999875
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ +.|||+||||++++..+||++++|
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999964 689999999999999999999999
Q ss_pred eCC
Q 035832 233 DMG 235 (245)
Q Consensus 233 ~~G 235 (245)
+++
T Consensus 302 ~~~ 304 (607)
T 3bk7_A 302 YGE 304 (607)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=342.34 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=162.7
Q ss_pred EeEEEECCCCccceeeeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEK-----SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. + .
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~-----------~ 411 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I-----------P 411 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C-----------C
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c-----------c
Confidence 5677888642 45799999999999 7899999999999999999999999999962 1 0
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...++|+||+.. ..+..||.+++......... . ...+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 412 ~~~i~~~~q~~~-~~~~~tv~e~~~~~~~~~~~----~---~~~~~~~l~~l~l~~~-~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 412 KLNVSMKPQKIA-PKFPGTVRQLFFKKIRGQFL----N---PQFQTDVVKPLRIDDI-IDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp SCCEEEECSSCC-CCCCSBHHHHHHHHCSSTTT----S---HHHHHHTHHHHTSTTT-SSSBSSSCCHHHHHHHHHHHHT
T ss_pred CCcEEEeccccc-ccCCccHHHHHHHHhhcccc----c---HHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHH
Confidence 246999999975 34467999988654221111 0 1235678899999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~~ 241 (245)
+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..+
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 99999999999999999999999999999984 379999999999999999999999996 7777654
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.7e-45 Score=342.39 Aligned_cols=200 Identities=22% Similarity=0.261 Sum_probs=158.8
Q ss_pred EEE-EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE---------EEcCccCCCCC
Q 035832 18 LEV-RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI---------NIRGYNNDGEP 87 (245)
Q Consensus 18 l~~-~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~g~~~~~~~ 87 (245)
.++ +||+|+|++. ..+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 566 6999999642 24899999 999999999999999999999999999999999995 34454321100
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCC---cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFV---ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.. ....+..+++++|+.. +++ ..++.+++.... ...++.++++.+|+... +++++.+||||
T Consensus 99 ~~--~~~~~~~~~~~~q~~~-~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~-~~~~~~~LSgG 162 (538)
T 1yqt_A 99 EK--LKNGEIRPVVKPQYVD-LIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENV-LEREIQHLSGG 162 (538)
T ss_dssp HH--HHTTSCCCEEECSCGG-GSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTT-TTSBGGGCCHH
T ss_pred HH--HHHHhhhhhhhhhhhh-hcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChh-hhCChhhCCHH
Confidence 00 0001245889999753 222 237888775321 01235678999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
|||||+|||||+.+|++|||||||++||+.+++.++++|+++++ +.|||+||||++++..+||++++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999854
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.5e-43 Score=342.76 Aligned_cols=191 Identities=24% Similarity=0.252 Sum_probs=160.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+.. ..
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----------~~ 494 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----------EE 494 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----------TT
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----------cc
Confidence 4777799999964 579999999999999999999999999999999995 543 332210 01
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.+++|++|++...++.+|+.+|+.+. . .. . .+++.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~~--~-~~-~------~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFES--G-VG-T------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHTT--C-SS-C------HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHHh--h-cC-H------HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 24789998864456778999999862 1 11 1 3457788999999532368999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+|++|||||||++||+.+++.++++|++ .+.|||++|||++++..+||++++|++|+++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~ 625 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeec
Confidence 99999999999999999999999999998 57899999999999999999999999999974
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.5e-43 Score=340.70 Aligned_cols=202 Identities=26% Similarity=0.352 Sum_probs=135.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCC-------cceEEEcCccC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLL---------------------QLLAGLSKPT-------SGSINIRGYNN 83 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl---------------------~~l~Gl~~p~-------~G~i~~~g~~~ 83 (245)
..+|+||||+|++||++||+||||||||||+ ++++|+.+|+ .|.|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 9999999998 45555655543
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCC------------------CCCcccHHHHHHhcCCCCCCchh--HHHH---HHHHH
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPER------------------YFVADNVLDEVIFGWPRQSGSIQ--LKEY---LALNL 140 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~------------------~~~~~tv~e~l~~~~~~~~~~~~--~~~~---~~~~~ 140 (245)
... .+..+|+++|.+.. .+..+||.||+.+.......... .... .....
T Consensus 111 ~~~--------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (670)
T 3ux8_A 111 SRN--------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR 182 (670)
T ss_dssp ------------CCBHHHHTTCC-------------------------CC--------------------------CHHH
T ss_pred hcc--------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence 221 12344555443321 23467899998774211000000 0000 00112
Q ss_pred HHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
.++++.+||.+..+++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|+++++ +.|||+|||
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 2458889998654689999999999999999999999998 9999999999999999999999999964 689999999
Q ss_pred ChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 218 DLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 218 d~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|++.+. .||++++| ++|+++.++.
T Consensus 263 d~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~ 292 (670)
T 3ux8_A 263 DEDTML-AADYLIDIGPGAGIHGGEVVAAGT 292 (670)
T ss_dssp CHHHHH-HCSEEEEECSSSGGGCCSEEEEEC
T ss_pred CHHHHh-hCCEEEEecccccccCCEEEEecC
Confidence 999765 69999999 8899987653
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.8e-41 Score=316.11 Aligned_cols=198 Identities=25% Similarity=0.268 Sum_probs=151.9
Q ss_pred EeEEEECCCCccceeeeeeEEEc-CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-----------EEcCccCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLP-EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-----------NIRGYNNDGEPN 88 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-----------~~~g~~~~~~~~ 88 (245)
++.+.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .++|.++.....
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567899753 3566666665 899999999999999999999999999999998 566655421000
Q ss_pred CCCCCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.. ......+...+|.... .+...++.+++.... ...++.++++.+++... .++++.+||||||
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~-~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 80 EL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNL-WNKDANILSGGGL 144 (538)
T ss_dssp HH--HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGG-TTSBGGGCCHHHH
T ss_pred HH--hhcccchhhccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchh-hcCChhhCCHHHH
Confidence 00 0001234455554321 122346766554320 01235677899999875 7999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|||+|||||+.+|++|||||||++||+.++..++++|+++++++|||+||||++++..+||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999768999999999999999999999998643
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=320.95 Aligned_cols=210 Identities=24% Similarity=0.317 Sum_probs=152.8
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE------
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN------ 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~------ 77 (245)
.|+-..|++.| ++++|+.. ...+++++ .+++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 64 ~cp~~~i~i~nl~~~~~~~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~ 141 (608)
T 3j16_B 64 KCPFDAIQIINLPTNLEAHVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQ 141 (608)
T ss_dssp HCSSCCEEEEEESSSSSTTEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHH
T ss_pred cCCccceEEecCChhhcCCeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchh
Confidence 35555677765 56788653 34677777 6899999999999999999999999999999999982
Q ss_pred -----EcCccCCCCCCCCCCCCCCCcEEEEecCCCCC-----CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc
Q 035832 78 -----IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY-----FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147 (245)
Q Consensus 78 -----~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~-----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (245)
+.|.++.......... .....+.+|..... -...++.+++..... ....++.++++.+
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----------~~~~~~~~~l~~~ 209 (608)
T 3j16_B 142 EIIKYFRGSELQNYFTKMLED--DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----------KSPEDVKRYIKIL 209 (608)
T ss_dssp HHHHHTTTSTHHHHHHHHHHT--SCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC----------SCHHHHHHHHHHH
T ss_pred hhhheecChhhhhhhhHHHHH--hhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh----------hHHHHHHHHHHHc
Confidence 2222110000000000 00122333432110 001134444332100 0123577889999
Q ss_pred CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 148 ~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
|+... +++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|||+||||++++..+|
T Consensus 210 gl~~~-~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~ 288 (608)
T 3j16_B 210 QLENV-LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLS 288 (608)
T ss_dssp TCTGG-GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHC
T ss_pred CCcch-hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 99875 7999999999999999999999999999999999999999999999999999975 689999999999999999
Q ss_pred cEEEEEeCCe
Q 035832 227 DHSWRMDMGG 236 (245)
Q Consensus 227 d~v~~l~~G~ 236 (245)
|++++|++|.
T Consensus 289 drv~vl~~~~ 298 (608)
T 3j16_B 289 DFVCIIYGVP 298 (608)
T ss_dssp SEEEEEESCT
T ss_pred CEEEEEeCCc
Confidence 9999998754
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.6e-40 Score=315.89 Aligned_cols=200 Identities=27% Similarity=0.298 Sum_probs=147.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh----------------------CCCCCCcceEEEcCccCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA----------------------GLSKPTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------------Gl~~p~~G~i~~~g~~~~~~~~~ 89 (245)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 35799999999999999999999999999998753 44444 46888888776432210
Q ss_pred CC-------------------------------------CCCCCCcEEEEecCCCC------------------------
Q 035832 90 SP-------------------------------------EPLPPEKVGIVFQFPER------------------------ 108 (245)
Q Consensus 90 ~~-------------------------------------~~~~~~~i~~v~Q~~~~------------------------ 108 (245)
.. ........|+++|+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 00 00001122333333210
Q ss_pred -------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC-
Q 035832 109 -------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD- 180 (245)
Q Consensus 109 -------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~- 180 (245)
.+..+|+.||+.+... . . ...+..+.++.+++....+++++.+|||||||||+|||||+.+|+
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~---~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----I---P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----C---H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----h---h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 0113688888887421 1 1 112345678889997544689999999999999999999999874
Q ss_pred --EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 181 --LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 181 --llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+|||||||+|||+.++..++++|+++++ +.|||+||||++.+ ..||||++| ++|+++.++.
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecC
Confidence 9999999999999999999999999974 69999999999987 579999999 8999998754
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=7.6e-37 Score=298.04 Aligned_cols=216 Identities=22% Similarity=0.261 Sum_probs=154.0
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHH-HhCCC-------CC--------------
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQL-LAGLS-------KP-------------- 71 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~-l~Gl~-------~p-------------- 71 (245)
+.+.|+++|+++ .+|+||||+|++||+++|+|+||||||||++. |+|++ +|
T Consensus 499 ~~~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~ 571 (842)
T 2vf7_A 499 PAGWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA 571 (842)
T ss_dssp CSCEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred CCceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 345799999975 15999999999999999999999999999996 66543 23
Q ss_pred ----Ccc-------eEEEcCccCCCCCCCCCC------C-------------------------------CCCCcEEEEe
Q 035832 72 ----TSG-------SINIRGYNNDGEPNNSPE------P-------------------------------LPPEKVGIVF 103 (245)
Q Consensus 72 ----~~G-------~i~~~g~~~~~~~~~~~~------~-------------------------------~~~~~i~~v~ 103 (245)
.+| .|.+++.++...++.... . ...+..|++.
T Consensus 572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~ 651 (842)
T 2vf7_A 572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM 651 (842)
T ss_dssp CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence 356 678888776432211000 0 0001122221
Q ss_pred cCCC-----------------------CCCCcccHHHHHHhcCCCC---CCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 104 QFPE-----------------------RYFVADNVLDEVIFGWPRQ---SGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 104 Q~~~-----------------------~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
.+.. ..+...++.|++.+..... .... . ...++.++++.+||....++++
T Consensus 652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~--~--~~~~~~~~L~~~gL~~~~l~~~ 727 (842)
T 2vf7_A 652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE--S--AIFRALDTLREVGLGYLRLGQP 727 (842)
T ss_dssp ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS--H--HHHHHHHHHHHTTCTTSBTTCC
T ss_pred hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc--h--HHHHHHHHHHHcCCCcccccCC
Confidence 1110 0011234444443210000 0000 1 1235678999999986446899
Q ss_pred CCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE-
Q 035832 158 PHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM- 232 (245)
Q Consensus 158 ~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l- 232 (245)
+.+|||||||||+||++|+.+ |++|||||||+|||+..++.++++|+++.+ +.|||+||||++++ ..||+|++|
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEC
Confidence 999999999999999999996 799999999999999999999999999964 69999999999998 789999999
Q ss_pred -----eCCeEEEec
Q 035832 233 -----DMGGFLVEQ 241 (245)
Q Consensus 233 -----~~G~i~~~~ 241 (245)
++|+++.++
T Consensus 807 p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 807 PGAGEDGGRLVAQG 820 (842)
T ss_dssp SSSGGGCCSEEEEE
T ss_pred CCCCCCCCEEEEEc
Confidence 689998764
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-36 Score=299.23 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=151.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHH---------HHHhCCCCCC------cc------e
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL---------QLLAGLSKPT------SG------S 75 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl---------~~l~Gl~~p~------~G------~ 75 (245)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +.+.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 45555553 2469999999999999999999999999997 4555544433 22 2
Q ss_pred EEEcCccCCCCCCCC-------------------------------------CCCCCCCcEEEEecCCCCCCC-------
Q 035832 76 INIRGYNNDGEPNNS-------------------------------------PEPLPPEKVGIVFQFPERYFV------- 111 (245)
Q Consensus 76 i~~~g~~~~~~~~~~-------------------------------------~~~~~~~~i~~v~Q~~~~~~~------- 111 (245)
+.++..++....... ......+..|+++++.. +++
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~-flp~~~v~c~ 740 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEML-FLPDVYVECD 740 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCT-TSCCEEEECT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeee-ccCcceeecc
Confidence 444443332211100 00001234577777653 222
Q ss_pred -------------------------cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 112 -------------------------ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 112 -------------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.+|+.+++.|... . ....+..++++.+||....+++++.+||||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~-----~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGEr 811 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I-----PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEA 811 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C-----HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c-----hhHHHHHHHHHHcCCchhhccCCccCCCHHHH
Confidence 2456666655310 0 11234667899999976556899999999999
Q ss_pred HHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCe
Q 035832 167 RRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~ 236 (245)
|||+|||||+.+| +||||||||+|||+..++.++++|+++.+ +.|||+||||++.+. .||+|++| ++|+
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCE
Confidence 9999999999876 79999999999999999999999999964 699999999999876 59999999 8899
Q ss_pred EEEecc
Q 035832 237 FLVEQR 242 (245)
Q Consensus 237 i~~~~~ 242 (245)
+++++.
T Consensus 891 Iv~~Gt 896 (916)
T 3pih_A 891 IVATGT 896 (916)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 998764
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1e-36 Score=298.35 Aligned_cols=210 Identities=27% Similarity=0.295 Sum_probs=154.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCC-------CCCcc-------------
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLS-------KPTSG------------- 74 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~-------~p~~G------------- 74 (245)
+.|++++++. .+|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5799999852 2599999999999999999999999999999853 221 12333
Q ss_pred eEEEcCccCCCCCCCCCC--------------C-CCCCcEEEEecCCCCC--------------------C---------
Q 035832 75 SINIRGYNNDGEPNNSPE--------------P-LPPEKVGIVFQFPERY--------------------F--------- 110 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~--------------~-~~~~~i~~v~Q~~~~~--------------------~--------- 110 (245)
.|.+++.++...+..... . ...+.+||++|.+... |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 377777776432211000 0 0012346666653210 0
Q ss_pred ----------------C--------cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 111 ----------------V--------ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 111 ----------------~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
. .+|+.|++.|.. . . .. ..+..++++.+||....+++++.+||||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-~---~---~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-S---I---PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-S---C---HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-c---c---hh--HHHHHHHHHHcCCCcccccCchhhCCHHHH
Confidence 0 235666665531 1 0 11 123467899999986346999999999999
Q ss_pred HHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCe
Q 035832 167 RRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~ 236 (245)
|||+||++|+.+| ++|||||||+|||+..++.++++|+++.+ +.|||+||||++++ ..||++++| ++|+
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCE
Confidence 9999999999875 99999999999999999999999999864 68999999999987 579999999 6899
Q ss_pred EEEecc
Q 035832 237 FLVEQR 242 (245)
Q Consensus 237 i~~~~~ 242 (245)
++.++.
T Consensus 931 Iv~~g~ 936 (972)
T 2r6f_A 931 IVAVGT 936 (972)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 987653
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-41 Score=310.25 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=154.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-e-EEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-S-INIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~-i~~~g~~~~~~~~~~~ 91 (245)
..+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------- 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------- 176 (460)
T ss_dssp CCTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----------
T ss_pred Ccchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----------
Confidence 356788999988873 69999999999999999999999999999999999999 9 999871
Q ss_pred CCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.++.++|+||++.. .+...|+.+|+ ++........ ...++.++++.+|+.+. .+ +.+|||||||||
T Consensus 177 ---~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 177 ---PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERI-NE--NKDLYLECISQL 244 (460)
T ss_dssp ---TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHH
T ss_pred ---ccCCeeeeccchhhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHH
Confidence 13568999998731 22346888888 6532111100 01224456778899864 34 889999999999
Q ss_pred HHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh------HHHhhccE-----EEE
Q 035832 170 ALAIQ--LVQVPDL----LILDE-PLAGLDWKARADVVKLLKHLKKELTILVVSHDLK------EMAALVDH-----SWR 231 (245)
Q Consensus 170 ~iAra--l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~------~~~~~~d~-----v~~ 231 (245)
+|||| |+.+|++ ||||| ||++||+. .+.+.++++++ +.|+|+||||.+ ++..+||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 66666666654 578999999988 78899999 999
Q ss_pred Ee-CCeEE
Q 035832 232 MD-MGGFL 238 (245)
Q Consensus 232 l~-~G~i~ 238 (245)
|+ +|+++
T Consensus 322 l~k~G~iv 329 (460)
T 2npi_A 322 IPKLDGVS 329 (460)
T ss_dssp ECCCTTCC
T ss_pred EeCCCcEE
Confidence 99 99987
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.4e-36 Score=294.72 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=149.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-C----CCC---CCcceE-----------
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-G----LSK---PTSGSI----------- 76 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-G----l~~---p~~G~i----------- 76 (245)
+.|++++++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. +..|.+
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 5799999852 2599999999999999999999999999999853 2 221 234543
Q ss_pred --EEcCccCCCCCCCCCC--------------C-CCCCcEEEEecCCCC---------------------CCC-------
Q 035832 77 --NIRGYNNDGEPNNSPE--------------P-LPPEKVGIVFQFPER---------------------YFV------- 111 (245)
Q Consensus 77 --~~~g~~~~~~~~~~~~--------------~-~~~~~i~~v~Q~~~~---------------------~~~------- 111 (245)
.+++.++...+..... . ...+..||++|.+.. +++
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 3344333211110000 0 001224566664320 000
Q ss_pred -------------------------cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 112 -------------------------ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 112 -------------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.+|+.+++.|.. . . .. ..+..++++.+||....+++++.+||||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~-~---~---~~--~~~~~~~L~~lgL~~~~l~~~~~~LSGGek 869 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE-P---I---AG--VHRYLRTLVDVGLGYVRLGQPAPTLSGGEA 869 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST-T---C---HH--HHHHHHHHHHTTGGGSBTTCCGGGSCHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh-c---c---hH--HHHHHHHHHHcCCCcccccCccccCCHHHH
Confidence 135555555431 0 0 11 123467899999976346899999999999
Q ss_pred HHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCe
Q 035832 167 RRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~ 236 (245)
|||+||++|+.+| ++|||||||+|||+..++.++++|+++.+ +.|||+||||++++ ..||++++| ++|+
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~ 948 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGT 948 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCE
Confidence 9999999999875 99999999999999999999999999864 69999999999987 579999999 6899
Q ss_pred EEEec
Q 035832 237 FLVEQ 241 (245)
Q Consensus 237 i~~~~ 241 (245)
++.++
T Consensus 949 Iv~~G 953 (993)
T 2ygr_A 949 VVAQG 953 (993)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98764
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=6.6e-36 Score=271.69 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=142.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------------------------------------CCcc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--------------------------------------PTSG 74 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--------------------------------------p~~G 74 (245)
.++++++|++++| +++|+||||||||||+++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3699999999999 999999999999999999977764 4478
Q ss_pred eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch------------------------
Q 035832 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI------------------------ 130 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~------------------------ 130 (245)
+++++|+++..... ....+..++++||++...+. +..+...|. .......
T Consensus 128 ~i~ing~~~~~~~~---~~~~~~~i~~~~q~~~l~l~--~~~~~r~~l-d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~ 201 (415)
T 4aby_A 128 AARLSGEVVSVREL---QEWAQGRLTIHWQHSAVSLL--SPANQRGLL-DRRVTKEAQAYAAAHAAWREAVSRLERLQAS 201 (415)
T ss_dssp EEEETTEEECHHHH---HHHHTTTEEEETTTCTTTTS--SHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEECCEECCHHHH---HHHHhhceEEecCccccccc--CHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999987642110 01112348999998753322 222222211 0000000
Q ss_pred ----------------------------------hHHHHHHHHHHHHHHHcCCCCcc----------------------C
Q 035832 131 ----------------------------------QLKEYLALNLQRAINWVGLDGTS----------------------L 154 (245)
Q Consensus 131 ----------------------------------~~~~~~~~~~~~~l~~~~l~~~~----------------------~ 154 (245)
.........+.+.++.+++.... .
T Consensus 202 ~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 281 (415)
T 4aby_A 202 ESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRF 281 (415)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEE
Confidence 00001122344455556554200 0
Q ss_pred C-------CCCCC-CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 155 D-------KDPHS-LSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 155 ~-------~~~~~-LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
. +++.. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++.++.|||+||||++.+ .
T Consensus 282 ~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~ 360 (415)
T 4aby_A 282 SANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-A 360 (415)
T ss_dssp ESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-T
T ss_pred EcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-h
Confidence 1 22333 6999999999999999999 9999999999999999999999999998779999999999775 6
Q ss_pred hccEEEEE----eCCeEEEe
Q 035832 225 LVDHSWRM----DMGGFLVE 240 (245)
Q Consensus 225 ~~d~v~~l----~~G~i~~~ 240 (245)
+||++++| ++|+++.+
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEE
T ss_pred hcCeEEEEEEeccCCceEEE
Confidence 89999999 99998764
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=100.00 E-value=8.3e-33 Score=248.46 Aligned_cols=84 Identities=21% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKRRLALAIQLV------QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++.+|||||||||+|||||+ .+|++|||||||++||+.++..++++|+++.+ +.|||+||||++. ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5688999999999999999999 69999999999999999999999999999964 6899999999998 57899
Q ss_pred EEEEEeCCeEEE
Q 035832 228 HSWRMDMGGFLV 239 (245)
Q Consensus 228 ~v~~l~~G~i~~ 239 (245)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=2.9e-33 Score=225.87 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=106.8
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
|+||++++||+++|+||||||||||+|++.+ |...+++.. ..|+++|++...+...+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~---------------~~g~~~~~~~~~~~~~~~~ 59 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDF---------------CRGLMSDDENDQTVTGAAF 59 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHH---------------HHHHHCSSTTCGGGHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHH---------------HHHHhcCcccchhhHHHHH
Confidence 6899999999999999999999999999653 222222111 1267788764332222222
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH--
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK-- 194 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~-- 194 (245)
+++.. .. ......+.... .+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 60 ~~~~~-----------------~~-~~~~~~g~~~~-~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 60 DVLHY-----------------IV-SKRLQLGKLTV-VD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHHHH-----------------HH-HHHHHTTCCEE-EE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHHHH-----------------HH-HHHHhCCCeEE-EE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 22211 11 11223455432 23 34566999999999999999999999999999999999
Q ss_pred --------------HHHHHHHHHHHhh-cCceEEEEecChhHHHhh
Q 035832 195 --------------ARADVVKLLKHLK-KELTILVVSHDLKEMAAL 225 (245)
Q Consensus 195 --------------~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~ 225 (245)
.+..+++.|++++ ++.|+|++|||++++..+
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 6688899988875 479999999999988653
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=8.5e-35 Score=242.37 Aligned_cols=158 Identities=17% Similarity=0.105 Sum_probs=102.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC-
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF- 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~- 110 (245)
+.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +. ...++++||+||++...+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~----~~~~~~ig~v~q~~~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PA----VEAGEKLGFLPGTLNEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CS----CCTTCCCCSSCC------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-Cc----hhhhcceEEecCCHHHHHH
Confidence 4689985 89999999999999999999999999 999999943 22211 10 123567999999861111
Q ss_pred Cc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 111 VA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 111 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
.. .++.+.+.. .. . ...+.++++. ++ ||||||+|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~~~~~----~~-~-------~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 81 PYLRPLHDALRD----MV-E-------PEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp TTTHHHHHHHTT----TS-C-------TTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHH----hc-c-------HHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 01 011121110 00 0 1123444543 22 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+ ++..++++|+++.+++||| +|||++++.. ...+++|..
T Consensus 134 ~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 134 T----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp C----CHHHHHHHHTTBCTTCEEE-EEEC----------------CCH
T ss_pred c----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 9 8899999999884468999 9999986543 344566643
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.6e-32 Score=239.01 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..++.++++|+++.++.+||++||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 58899999999999999999999999999866789999999975 56789987
Q ss_pred --EEEeCCeEEE
Q 035832 230 --WRMDMGGFLV 239 (245)
Q Consensus 230 --~~l~~G~i~~ 239 (245)
++|.+|....
T Consensus 292 ~~v~~~~g~s~~ 303 (322)
T 1e69_A 292 HGVTMVNGVSAI 303 (322)
T ss_dssp EEEEESSSCEEE
T ss_pred EEEEEeCCEEEE
Confidence 8888886543
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.97 E-value=6.2e-34 Score=258.82 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=138.1
Q ss_pred cceeeeeeEEEcCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 32 VDILNGVSFSLPEKS--------------------FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge--------------------~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.+|+++||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999876431
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH--HHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG--YKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv 169 (245)
+ .+++||++ .++.+|+.|+..++.. ...+.++++.+++.+. +..+. ||+| |+||+
T Consensus 109 ----~--~~~v~q~~--~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~--~~~~~-lS~G~~~kqrv 165 (413)
T 1tq4_A 109 ----M--ERHPYKHP--NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY--DFFII-ISATRFKKNDI 165 (413)
T ss_dssp ----C--CCEEEECS--SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC--SEEEE-EESSCCCHHHH
T ss_pred ----e--eEEecccc--ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc--CCeEE-eCCCCccHHHH
Confidence 1 16899985 3556788887655421 1135677888888753 44444 9999 99999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-----c-----CceEEEEecChhH--HHhhcc
Q 035832 170 ALAIQLVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLK-----K-----ELTILVVSHDLKE--MAALVD 227 (245)
Q Consensus 170 ~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~-----~-----~~tiii~tHd~~~--~~~~~d 227 (245)
+||+||+. +|++++|||||+|||+..++++++.|+++. + ..+|+++||+++. +..+||
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 99999999 999999999999999999999999998873 1 1568899999887 888888
Q ss_pred EEE
Q 035832 228 HSW 230 (245)
Q Consensus 228 ~v~ 230 (245)
++.
T Consensus 246 ~I~ 248 (413)
T 1tq4_A 246 KLI 248 (413)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.96 E-value=3.5e-31 Score=215.37 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=103.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
.++|+||||||||||+++|+|++. |.++|.+..... ....++++||++|++. . .+++ ++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~----~~~~~~~ig~~~~~~~-~------~~~~-~~~~-- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR----DPETKKRTGFRIITTE-G------KKKI-FSSK-- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC----------CCEEEEEETT-C------CEEE-EEET--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc----cccccceeEEEeecCc-H------HHHH-HHhh--
Confidence 589999999999999999999985 455554431110 0012467999999862 1 1111 1100
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHH
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ-----LVQVPDLLILDE--PLAGLDWKARADV 199 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra-----l~~~p~llllDE--Pts~LD~~~~~~i 199 (245)
.. .-... .++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+
T Consensus 63 -~~------------------~~~~~-~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 63 -FF------------------TSKKL-VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp -TC------------------CCSSE-ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred -cC------------------Ccccc-ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 00022 578899999999999999996 999999999999 9999999999999
Q ss_pred HHHHHHhhcCceEEEEe---cChhHHHhhccE
Q 035832 200 VKLLKHLKKELTILVVS---HDLKEMAALVDH 228 (245)
Q Consensus 200 ~~~l~~l~~~~tiii~t---Hd~~~~~~~~d~ 228 (245)
.+++.+ .+.|+|++| ||.+++..+|++
T Consensus 123 ~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 123 RQIMHD--PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHTC--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHhc--CCCeEEEEEccCCCchHHHHHHhc
Confidence 998876 356788888 599999999998
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.96 E-value=2.6e-33 Score=232.46 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=120.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.++++| .+|++||+++|+||||||||||+|+|+|+++. +.+++.. ...... ...++.++|+||++. .|.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~-~~~~~~---~~~~~~i~~~~q~~~-~~~ 77 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSA-TTRAPR---PGEVDGVDYHFIDPT-RFQ 77 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCE-ESSCCC---TTCCBTTTBEECCHH-HHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccc-cccCCc---ccccCCCeeEecCHH-HHH
Confidence 457888 79999999999999999999999999999963 4444322 111111 112467999999975 456
Q ss_pred cccHHHHHHhcCCC----CCCchhHHHHHHHHHHHH------HHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 035832 112 ADNVLDEVIFGWPR----QSGSIQLKEYLALNLQRA------INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 112 ~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~l 181 (245)
.+++.+++...... ..... ......+++.+. ++.+|+... .++++.+|| ||+.+|++
T Consensus 78 ~~~~~~~l~~~~~~~~n~~~~g~-~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~lS-----------~l~~~p~~ 144 (207)
T 1znw_A 78 QLIDQGELLEWAEIHGGLHRSGT-LAQPVRAAAATGVPVLIEVDLAGARAI-KKTMPEAVT-----------VFLAPPSW 144 (207)
T ss_dssp HHHHTTCEEEEEEEGGGTEEEEE-EHHHHHHHHHHTCCEEEECCHHHHHHH-HHHCTTSEE-----------EEEECSCH
T ss_pred HHHhcCCceeehhhcCchhhcCC-cHHHHHHHHHcCCeEEEEeCHHHHHHH-HHhcCCcEE-----------EEEECCCH
Confidence 67777776432100 00011 122233344444 555666543 577888888 99999999
Q ss_pred EEEeCCCCCC----CHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC
Q 035832 182 LILDEPLAGL----DWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 182 lllDEPts~L----D~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++|||||+++ |+..+++++++++++.+ +.|+|++|||++++..+||++++|..
T Consensus 145 ~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 145 QDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999999998 78899999999999863 58999999999999999999999853
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.95 E-value=1.4e-30 Score=228.43 Aligned_cols=181 Identities=18% Similarity=0.106 Sum_probs=137.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~ 112 (245)
++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... .....+ .+..++|++|++...++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 467899999999999999999999999999999999999999999987643100 000000 023699999997414567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~ 190 (245)
.++++++.++.... . ...+++.+|+.+. .++++.+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 170 ~~v~e~l~~~~~~~-~-----------d~~lldt~gl~~~-~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG-Y-----------DVVLCDTSGRLHT-NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTT-C-----------SEEEECCCCCSSC-CHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcC-C-----------cchHHhcCCCCcc-hhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 89999998752110 0 0123556788764 577888999 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhh--cCceEEEEec---------ChhHHHhhccEEEEEeCCeEE
Q 035832 191 LDWKARADVVKLLKHLK--KELTILVVSH---------DLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~--~~~tiii~tH---------d~~~~~~~~d~v~~l~~G~i~ 238 (245)
||+..+. +++. .+.|+|++|| .++.+...++.|.++..|+.+
T Consensus 233 lD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998652 3343 2689999999 556666778899999999764
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.95 E-value=4e-33 Score=244.29 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=122.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------- 155 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------------------
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------------------
Confidence 589999999995 46899999999999999999999999999999999998 79883
Q ss_pred CcEEEEecCCCCCCCcccHHH-HHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLD-EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+|++|++. ++..|+.+ |+.++ ... . . .+.+.++.+ +.+. ++ +..|||||||| ||||
T Consensus 156 ---~~v~q~~~--lf~~ti~~~ni~~~-~~~--~---~-----~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAl 212 (305)
T 2v9p_A 156 ---SFANHKSH--FWLASLADTRAALV-DDA--T---H-----ACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQ 212 (305)
T ss_dssp ---CGGGTTSG--GGGGGGTTCSCEEE-EEE--C---H-----HHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCE
T ss_pred ---EEecCccc--cccccHHHHhhccC-ccc--c---H-----HHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHH
Confidence 34567663 33467776 77764 110 0 0 233445553 4443 34 78999999999 9999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|+++..+
T Consensus 213 l~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g 259 (305)
T 2v9p_A 213 IKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNI 259 (305)
T ss_dssp ECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCC
T ss_pred hCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeC
Confidence 99999999 99999999888762 29998864 689999 99999997654
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=7.3e-31 Score=240.74 Aligned_cols=194 Identities=15% Similarity=0.077 Sum_probs=148.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc---cCCCCCCCCC-
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY---NNDGEPNNSP- 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~~~~~~~~- 91 (245)
++++++++++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++........
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468999999999632 4699999 999999999999999999999999999999999999999997 4422100000
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|++|+....+...++.+|+.+.. + .... ..-..... ++ .+..||+|| |||+|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a---------e-~~~~------~~~~v~~~-ld-~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA---------E-DFRD------RGQHVLLI-MD-SLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH---------H-HHHT------TTCEEEEE-EE-CHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH---------H-HHHh------CCCCHHHH-HH-hHHHHHHHH-HHHHH
Confidence 01124679999996444556778888887641 0 0000 00011111 22 367899999 99999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-----Cc-----eEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-----EL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
| +.+|++ |+|||+.....+.+++.++.+ +. ||+++|||++ ..+||++++|.+|+++.+.
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeC
Confidence 9 889988 999999999999999999854 43 8999999998 6789999999999998754
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=9.2e-32 Score=225.26 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=120.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++..... ....+..++|+||++. .|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~---~~~~~~~i~~~~~~~~-~~~~ 82 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKK---REKEKEGVDYYFIDKT-IFED 82 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCC---CSSCCBTTTBEECCHH-HHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCC---CcccccCCeEEECCHH-HHHH
Confidence 4699999999999999999999999999999999999 6 99999 776543211 1112467999999874 3333
Q ss_pred ccH-HHHHHhcC-CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH-----HHHHhhCCCEEEEe
Q 035832 113 DNV-LDEVIFGW-PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL-----AIQLVQVPDLLILD 185 (245)
Q Consensus 113 ~tv-~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i-----Aral~~~p~llllD 185 (245)
++. .+++.++. ....... .. ..+.++++...+. .++ .+|||||+||++| ||+|+.+|++++||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~-~~----~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT-LK----SEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE-EH----HHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred hhhccchhhhhhcccccCCC-cH----HHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 321 11221110 0000000 11 1345555554432 123 5799999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------cCceEEEEecChhHHHhhccEEEE
Q 035832 186 EPLAGLDWKARADVVKLLKHLK--------KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 186 EPts~LD~~~~~~i~~~l~~l~--------~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
|||+++|..+...+.+.+.++. .....|+++||++++...+++++.
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 9999999998888888887653 236789999999998888877654
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=2.6e-29 Score=224.72 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=137.7
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCcc
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~~ 113 (245)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... .....+ .+..++|++|++...++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999987643100 000000 1246999999874145678
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGL 191 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~L 191 (245)
++++++.++..... -..+++.+|+.+. .++++.+|| |||++||||++.+|+ +|+|| ||+||
T Consensus 228 tv~e~l~~~~~~~~------------d~~lldt~Gl~~~-~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEGY------------DVVLCDTSGRLHT-NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTTC------------SEEEEECCCCSSC-CHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCCC------------HHHHHHhcCCChh-hhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999987521100 0123556788764 577888999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhh--cCceEEEEec---------ChhHHHhhccEEEEEeCCeEE
Q 035832 192 DWKARADVVKLLKHLK--KELTILVVSH---------DLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~--~~~tiii~tH---------d~~~~~~~~d~v~~l~~G~i~ 238 (245)
|+..+. +.+. .+.|+|++|| .+..+...+..|.++..|+.+
T Consensus 291 D~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 291 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 998653 3333 2689999999 456666778899999999764
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=1.9e-28 Score=217.22 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=108.6
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~------~~~~~~i~~~~---------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF------KHHKNYTQLFF---------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC------SSCSSEEEEEC----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc------ccchhEEEEEe----------
Confidence 78999999999999999999999999999999999999999999987542110 01123344332
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
| |||+||++|||||..+|++|++||||+
T Consensus 224 ----------------------------------g--------------gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------G--------------GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------B--------------TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------C--------------CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 0 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 194 ~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
.++++.|+.+..+ .|+|++||+.+ +...|||+++|.+|.
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 2456777777766 58999999998 678899999998775
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.93 E-value=4.9e-29 Score=215.30 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=95.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
.++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++|+||++. .++.+||.||+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-------~~~~~i~~v~q~~~-~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-------VEIKAIGHVIEEGG-VKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-------CSCCEEEESCC-----CCEEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-------eeeeeeEEEeecCC-CcCCceEEechhhhhhcc
Confidence 3789999999999999999999999999999999876321 23568999999974 667889999998874221
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.. . ... .+.+.+. ... .+..+.+||||||||+++|||++. ++++|||+++||+.. .++++.+
T Consensus 76 ~~-~-~~~----~i~~~~~----~~~-~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L 137 (270)
T 3sop_A 76 NE-N-CWE----PIEKYIN----EQY-EKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHL 137 (270)
T ss_dssp CT-T-CSH----HHHHHHH----HHH-HHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHH
T ss_pred cH-H-HHH----HHHHHHH----HHH-HhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHH
Confidence 11 0 001 1222222 122 355677899999999999999886 999999999999987 3445555
Q ss_pred hcCceEEEEecChhH
Q 035832 207 KKELTILVVSHDLKE 221 (245)
Q Consensus 207 ~~~~tiii~tHd~~~ 221 (245)
.+..+||++.|..+.
T Consensus 138 ~~~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 138 SKVVNIIPVIAKADT 152 (270)
T ss_dssp HTTSEEEEEETTGGG
T ss_pred HhcCcEEEEEecccc
Confidence 444788888887653
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.93 E-value=4.9e-30 Score=225.85 Aligned_cols=176 Identities=17% Similarity=0.069 Sum_probs=128.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEE-----------------------EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFS-----------------------LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~-----------------------i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
+|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 589999999993 567777764 89999999999999999999999999999865
Q ss_pred ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 74 G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
|. .++++|+|++. +++. |+.+|+.+.... ... .....+.+.++++.++ ...
T Consensus 119 G~---------------------~~v~~v~qd~~-~~~~-t~~e~~~~~~~~--g~~--~~~d~~~~~~~L~~l~-~~~- 169 (312)
T 3aez_A 119 HH---------------------PRVDLVTTDGF-LYPN-AELQRRNLMHRK--GFP--ESYNRRALMRFVTSVK-SGS- 169 (312)
T ss_dssp TC---------------------CCEEEEEGGGG-BCCH-HHHHHTTCTTCT--TSG--GGBCHHHHHHHHHHHH-TTC-
T ss_pred CC---------------------CeEEEEecCcc-CCcc-cHHHHHHHHHhc--CCC--hHHHHHHHHHHHHHhC-CCc-
Confidence 42 35899999974 4555 999998653111 111 1111234567777777 443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHH-HhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEM-AALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~-~~~~d~v~~ 231 (245)
.+.++.+|||||+||+++|+|++.+|+|||+|||++.+|+.. ..+.+- -..|+++|+.+.. ..+++|.+.
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~ 241 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLA 241 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999998621 112221 2468888887653 233455443
Q ss_pred Ee
Q 035832 232 MD 233 (245)
Q Consensus 232 l~ 233 (245)
+.
T Consensus 242 ~r 243 (312)
T 3aez_A 242 MR 243 (312)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.93 E-value=3.8e-27 Score=234.61 Aligned_cols=168 Identities=18% Similarity=0.115 Sum_probs=124.1
Q ss_pred CcceEEEEe-----EEEECCCCccceeeeeeEEEcC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 14 DYSCLEVRD-----VSYRPPGTQVDILNGVSFSLPE-------KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 14 ~~~~l~~~~-----l~~~y~~~~~~il~~vsl~i~~-------Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
+.++|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||||++ |++.+-
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp SCCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 345799999 99998432 4699999999987 999999999999999999999 998640
Q ss_pred cCCCCCCCCCCCCCCCcEE-EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC
Q 035832 82 NNDGEPNNSPEPLPPEKVG-IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS 160 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 160 (245)
.++| ||||++. .+++.+++... +|+.+. ..+..++
T Consensus 816 ---------------aqiG~~Vpq~~~----~l~v~d~I~~r------------------------ig~~d~-~~~~~st 851 (1022)
T 2o8b_B 816 ---------------AQMGCYVPAEVC----RLTPIDRVFTR------------------------LGASDR-IMSGEST 851 (1022)
T ss_dssp ---------------HTTTCCEESSEE----EECCCSBEEEE------------------------CC----------CH
T ss_pred ---------------hheeEEeccCcC----CCCHHHHHHHH------------------------cCCHHH-Hhhchhh
Confidence 1345 9999752 34555544221 122221 2334567
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR-ADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 161 LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.+. + ++++|++||+++++..+||++.++. |++
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~ 929 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHM 929 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeE
Confidence 8888775 9999999999999999999999999875 55788998886 3 6899999999999999999988874 777
Q ss_pred E
Q 035832 238 L 238 (245)
Q Consensus 238 ~ 238 (245)
.
T Consensus 930 ~ 930 (1022)
T 2o8b_B 930 A 930 (1022)
T ss_dssp E
T ss_pred E
Confidence 6
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.93 E-value=4e-30 Score=241.01 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=125.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHH--HhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQL--LAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~--l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
..+++.+++.+...+ .++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++....
T Consensus 10 ~~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~----- 82 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD----- 82 (525)
T ss_dssp ----CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-----
T ss_pred CCCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHH-----
Confidence 345667777654433 579999999 999999999999999999999999 7899999999999998763110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++.+||+||++... +++.+....... ...++++.+++.+. +++.+.+||+|
T Consensus 83 ~~~~~~~~g~~~q~~~~~-------~~l~~~~~~~~~----------~~~~~l~~~~l~~~-~~~~~~~LS~g------- 137 (525)
T 1tf7_A 83 IIKNARSFGWDLAKLVDE-------GKLFILDASPDP----------EGQEVVGGFDLSAL-IERINYAIQKY------- 137 (525)
T ss_dssp HHHHHGGGTCCHHHHHHT-------TSEEEEECCCCS----------SCCSCCSSHHHHHH-HHHHHHHHHHH-------
T ss_pred HHHHHHHcCCChHHhhcc-------CcEEEEecCccc----------chhhhhcccCHHHH-HHHHHHHHHHc-------
Confidence 001235689999986311 011110000000 00011122222221 23444455555
Q ss_pred HHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH---------HhhccEEEEEeC
Q 035832 172 AIQLVQVPDLLILDEPLA-----GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM---------AALVDHSWRMDM 234 (245)
Q Consensus 172 Aral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~---------~~~~d~v~~l~~ 234 (245)
+|+++++||||+ +||+..++.++++++.+++ ++|||++||+++++ ..+||+|++|++
T Consensus 138 ------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 138 ------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp ------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred ------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 588999999998 4699999999999999964 79999999999984 556999999998
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=2.2e-25 Score=199.43 Aligned_cols=82 Identities=23% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 155 DKDPH-SLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 155 ~~~~~-~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
++++. .||||||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc---
Confidence 44666 79999999999999999 8999999999999999999999999998875 699999994 43
Q ss_pred hccEEEEEeCCeEEEecc
Q 035832 225 LVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~~~ 242 (245)
.||++++|++|+++..+.
T Consensus 333 ~~~~i~~l~~G~i~~~g~ 350 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVAD 350 (359)
T ss_dssp TCSEEEEEETTEEEECCC
T ss_pred cCCEEEEEECCEEEecCC
Confidence 899999999999987653
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.92 E-value=1.2e-28 Score=219.78 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=138.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC---CCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE---PNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~ 92 (245)
++++++++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ......
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 468999999999632 4699999 99999999999999999999999999999999999999988641100 000000
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
....+.+.+++|.... ..+.+... .....+.+.+...+-.-..+-+.+..||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~~------~~~r~~~~------------~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDRP------ALERMKAA------------FTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTSC------HHHHHHHH------------HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCCC------HHHHHHHH------------HHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 0123457888876421 11111110 0000111111111111000114688999999 999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--c-Cc-----eEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--K-EL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~-~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++ |+||||.....+.++++++. + +. ||+++|||++ ..+||++++|.+|+++.+.
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 688887 99999999999999999985 3 45 8999999998 6789999999999998764
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.92 E-value=1.2e-25 Score=199.76 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=70.4
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++.+||||||| |+++|+||+.+|++|||||||++||+..+..++++|+++.+ +.|||++|||.+ +...||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 5788999999999 67788888899999999999999999999999999999854 589999999965 578999
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.92 E-value=1.1e-25 Score=210.61 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=73.0
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 156 KDPHSL-SGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 156 ~~~~~L-SgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|+++.++.|||+|||+++.+. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999977789999999999765 79999999
Q ss_pred eCC
Q 035832 233 DMG 235 (245)
Q Consensus 233 ~~G 235 (245)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.92 E-value=9.3e-27 Score=202.63 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=121.5
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+.. . ...++++.++++...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---~----~~~~~r~~~~~~~~~---- 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---V----EETAEDLIGLHNRVR---- 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---H----HHHHHHHHHHHTTCC----
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---H----HHHHHHHHHHHcCCC----
Confidence 579999999999999999999999999999999999999888 7766443221 0 011223333443321
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY-KRRLALAIQLVQVPDLLILDEPLA- 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqrv~iAral~~~p~llllDEPts- 189 (245)
.+..+++..+. .......+.+.++++..++. ....+..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 92 -~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 92 -LRQSDSLKREI-------IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp -GGGCHHHHHHH-------HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred -hhhccccccCC-------CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 11222332210 00111122333444333331 244457899999 67776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHhhc--CceEEEEecCh--h--------------------HHHhhccEEEEEeCCeE
Q 035832 190 --G---LDW-KARADVVKLLKHLKK--ELTILVVSHDL--K--------------------EMAALVDHSWRMDMGGF 237 (245)
Q Consensus 190 --~---LD~-~~~~~i~~~l~~l~~--~~tiii~tHd~--~--------------------~~~~~~d~v~~l~~G~i 237 (245)
+ +|+ ....++.+.|+++++ ++|||++||+. + .+..+||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999998853 68999999995 5 67889999999998864
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=1.8e-25 Score=209.39 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=122.2
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
+..|.+|++++|+||||||||||+++++|+.+|. |+ +-+.|++|++. ..+..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~---------------------~vi~~~~ee~~-----~~l~~~ 327 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE---------------------RAILFAYEESR-----AQLLRN 327 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC---------------------CEEEEESSSCH-----HHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC---------------------CEEEEEEeCCH-----HHHHHH
Confidence 4589999999999999999999999999998774 42 12456677652 233343
Q ss_pred HH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 035832 119 VI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK--- 194 (245)
Q Consensus 119 l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~--- 194 (245)
.. +++ . ..+ +...|+... .+.++.+|||||+||+++|+++..+|++||+| ||++||+.
T Consensus 328 ~~~~g~-------~--------~~~-~~~~g~~~~-~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~ 389 (525)
T 1tf7_A 328 AYSWGM-------D--------FEE-MERQNLLKI-VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSN 389 (525)
T ss_dssp HHTTSC-------C--------HHH-HHHTTSEEE-CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCH
T ss_pred HHHcCC-------C--------HHH-HHhCCCEEE-EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCCh
Confidence 32 111 0 011 223566554 58889999999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHHHhhc-CceEEEEecCh----------hHHHhhccEEEEEeCCe
Q 035832 195 --ARADVVKLLKHLKK-ELTILVVSHDL----------KEMAALVDHSWRMDMGG 236 (245)
Q Consensus 195 --~~~~i~~~l~~l~~-~~tiii~tHd~----------~~~~~~~d~v~~l~~G~ 236 (245)
.++.+.++++.+++ +.|+|++||+. +.+..+||+|++|++|+
T Consensus 390 ~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 390 NAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999875 69999999998 77888999999999876
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=5.6e-25 Score=216.22 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=120.1
Q ss_pred HHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC--C--Cc-h-hHH
Q 035832 60 TLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ--S--GS-I-QLK 133 (245)
Q Consensus 60 TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~--~--~~-~-~~~ 133 (245)
|...|..+.++|.+++|+++|+++.. +..+++.+++.+..... . .. . ...
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~------------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~ 438 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE------------------------FTELSISEELEFLKNLNLTEREREIVGELL 438 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH------------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH------------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhH
Confidence 44566777888999999998876521 23456666665421100 0 00 0 011
Q ss_pred HHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhc-Cc
Q 035832 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGLDWKARADVVKLLKHLKK-EL 210 (245)
Q Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~-~~ 210 (245)
++. ....+.+..+||....+++++.+|||||||||+|||||+.+|+ +|||||||+|||+...+.++++|+++++ +.
T Consensus 439 ~~~-~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 439 KEI-EKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp HHH-HHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred HHH-HHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 111 2345678889998654689999999999999999999999887 9999999999999999999999999975 68
Q ss_pred eEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 211 TILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 211 tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|||+||||++.+. .||++++| ++|++++++.
T Consensus 518 TvivVtHd~~~~~-~aD~ii~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 518 TVIVVEHDEEVIR-NADHIIDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp EEEEECCCHHHHH-TCSEEEEEESSSGGGCSEEEEEEC
T ss_pred EEEEEeCCHHHHH-hCCEEEEEcCCcccCCCEEEEeec
Confidence 9999999999876 59999999 8899988654
No 90
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=3.2e-25 Score=190.53 Aligned_cols=141 Identities=20% Similarity=0.141 Sum_probs=104.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-------- 68 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-------- 68 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--------
T ss_pred CCChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--------
Confidence 3556666532 4799999 8999999999999999999999999999998 999999886542110
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+..+++++|. .+|++. ..| |++||+||
T Consensus 69 ~~~~~~v~q~----------------------------------------~~gl~~-------~~l------~~~la~aL 95 (261)
T 2eyu_A 69 KHKKSIVNQR----------------------------------------EVGEDT-------KSF------ADALRAAL 95 (261)
T ss_dssp CCSSSEEEEE----------------------------------------EBTTTB-------SCH------HHHHHHHH
T ss_pred CCcceeeeHH----------------------------------------HhCCCH-------HHH------HHHHHHHH
Confidence 1111222221 123321 122 89999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
..+|++|++|||| |+.+...++ +....+.+|+++||+.+ +...|||++.|.
T Consensus 96 ~~~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 96 REDPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred hhCCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 9999999999999 998876544 33445789999999987 567889887664
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.90 E-value=1.6e-26 Score=194.92 Aligned_cols=181 Identities=17% Similarity=0.099 Sum_probs=111.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeE--EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSF--SLPEKSFGLIFGRSGSGKTTLLQLLA--GLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl--~i~~Ge~~~liG~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+++++.++..+++ |+.+ + .|++|++++|+||||||||||+++|+ |+.++..|.+++++...... .
T Consensus 6 ~~~~~~i~tg~~~-----lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~-----~ 74 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-----FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD-----L 74 (251)
T ss_dssp --CCCEECCSCTT-----TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-----H
T ss_pred ccccceeecCCHh-----HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH-----H
Confidence 5777778776643 4443 2 78999999999999999999999999 77566777788776432110 0
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
....+.+||.+|+.. .....++.++.... .... .. . ........+.++......+
T Consensus 75 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~----------~~~~---~~---------~--~~~~~~~~~~~~~~~~~~~ 129 (251)
T 2ehv_A 75 RREMASFGWDFEKYE-KEGKIAIVDGVSSV----------VGLP---SE---------E--KFVLEDRFNVDNFLRYIYR 129 (251)
T ss_dssp HHHHHTTTCCHHHHH-HTTSEEEEC-------------------------------------------CCHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHh-hcCCEEEEEccccc----------cccc---cc---------c--ceeccCcccHHHHHHHHHH
Confidence 001123555555431 11112221111110 0000 00 0 0111122345555555555
Q ss_pred HHHhhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHhhc-CceEEEEecChhHH---------Hhhc-cEEEEEe
Q 035832 173 IQLVQVPDLLILDEPLAGLD-----WKARADVVKLLKHLKK-ELTILVVSHDLKEM---------AALV-DHSWRMD 233 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD-----~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~---------~~~~-d~v~~l~ 233 (245)
..-..+|+++++||||++|| +..++.+.++++.+++ ++|||++||+++++ ..+| |++++|+
T Consensus 130 ~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 55678999999999999998 7777779999998864 79999999999988 6788 9999995
No 92
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.90 E-value=4.2e-26 Score=193.66 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=104.9
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. ++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------------~~~~~i~~v~~d~--~~ 70 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------------QRQRKVVILSQDR--FY 70 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------------GGGCSEEEEEGGG--GB
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------------ccCCceEEEeCCc--Cc
Confidence 357999999999999999999999999999999999976 555443 0245799999985 55
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+|+.+++.+......... ........+.+.++.+ .+. .+.++..||+||+||+++ ++++.+|+++|+|||...
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~-~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 71 KVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEG-KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp CCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTT-CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred cccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCC-CCeecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 66799998876422111000 0011112233444433 222 466788999999999988 688999999999999988
Q ss_pred CCHHHHHHHHHHHHHhhcCceEEEEecChhHH-HhhccEE
Q 035832 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEM-AALVDHS 229 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~-~~~~d~v 229 (245)
.|.. +.++ .+.+|+++||+...+ ..+++++
T Consensus 146 ~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 146 YSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp TSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT
T ss_pred ccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH
Confidence 8764 1222 267999999974334 4444433
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=1.2e-23 Score=206.21 Aligned_cols=130 Identities=26% Similarity=0.318 Sum_probs=105.6
Q ss_pred CCcccHHHHHHhcCCCCCCchh-------HHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--C
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQ-------LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--D 180 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~ 180 (245)
+..+||.|++.|. ........ ..++...++ +++..+||....+++++.+|||||||||+||++|+.+| +
T Consensus 449 ~~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 449 VTAMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HHTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 4568999999984 21111110 012334444 46889999864469999999999999999999999985 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+|||||||++||+...+.++++|+++++ +.|||+|+||++++. .||+|++| ++|++++++.
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEEC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecC
Confidence 9999999999999999999999999975 689999999999875 79999999 7899988764
No 94
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.89 E-value=3.3e-23 Score=163.44 Aligned_cols=83 Identities=33% Similarity=0.454 Sum_probs=74.5
Q ss_pred CCCCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 154 LDKDPHSLSGGYKRRLALA------IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iA------ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++|||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 3678999999999999876 899999999999999999999999999999999864 689999999995 67899
Q ss_pred cEEEEE--eCCeE
Q 035832 227 DHSWRM--DMGGF 237 (245)
Q Consensus 227 d~v~~l--~~G~i 237 (245)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45644
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=3.6e-24 Score=211.22 Aligned_cols=162 Identities=19% Similarity=0.115 Sum_probs=114.3
Q ss_pred cceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCcceEEEcCccC
Q 035832 15 YSCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLL--------AGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~~~ 83 (245)
...|.+++...-+-. +...+++|++|++++|++++|+||||||||||||++ .|...|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 345778776543311 124689999999999999999999999999999999 55444432211
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
++++. .. +..+|+. +.....+|+
T Consensus 702 ---------------~~~~d----~i----------------------------------~~~ig~~----d~l~~~lSt 724 (934)
T 3thx_A 702 ---------------VSIVD----CI----------------------------------LARVGAG----DSQLKGVST 724 (934)
T ss_dssp ---------------EECCS----EE----------------------------------EEECC-------------CH
T ss_pred ---------------chHHH----HH----------------------------------HHhcCch----hhHHHhHhh
Confidence 11000 00 0111221 112345788
Q ss_pred HHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 164 GYKRRLALAIQL--VQVPDLLILDEPLAGLDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 164 Gqkqrv~iAral--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|++++..+|+++ +.+|+++||||||+|+|+.....+ +.+++.+.+ ++++|++||+.+. ..+||++..+.+|++.
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEE
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEE
Confidence 888888888888 999999999999999999998888 677777753 6899999999765 5799999999999987
Q ss_pred Eec
Q 035832 239 VEQ 241 (245)
Q Consensus 239 ~~~ 241 (245)
..+
T Consensus 804 ~~~ 806 (934)
T 3thx_A 804 ALT 806 (934)
T ss_dssp EEE
T ss_pred EEe
Confidence 643
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=1.5e-22 Score=199.17 Aligned_cols=131 Identities=24% Similarity=0.269 Sum_probs=104.9
Q ss_pred CCCcccHHHHHHhcCCCCCCchh-------HHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC--C
Q 035832 109 YFVADNVLDEVIFGWPRQSGSIQ-------LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV--P 179 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~--p 179 (245)
.+..+||.+++.|. ........ ..++...++ +.+..+||....+++++.+|||||||||+||++|+.+ |
T Consensus 465 q~~~ltV~e~l~f~-enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 465 EVCELSIADCADFL-NALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp CSSHHHHHHHHHTT-TTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HHhhCCHHHHHHHH-HhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 35568999999984 22211110 002233444 4588899975446999999999999999999999999 5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
++|||||||++||+...+.++++|+++++ +.|||+|+||++++. .||+|++| ++|++++++.
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEEC
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeC
Confidence 99999999999999999999999999974 699999999999875 79999999 6888887653
No 97
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.88 E-value=3.2e-22 Score=182.89 Aligned_cols=77 Identities=27% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEE
Q 035832 156 KDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~ 230 (245)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++.. +.++|++||+... ...||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 345569999999999999999 58999999999999999999999999999864 5899999999765 56899999
Q ss_pred EEe
Q 035832 231 RMD 233 (245)
Q Consensus 231 ~l~ 233 (245)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.88 E-value=1.1e-23 Score=204.36 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=108.4
Q ss_pred ceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..|.+++...-.-. +...+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+. +
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p------ 610 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P------ 610 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S------
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e------
Confidence 34777777322200 224689999999 99999999999999999999999874 6777642 0
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..+..+++++| .|..+++.+|+. ..+|+|++|++.+|+
T Consensus 611 a~~~~i~~v~~----i~~~~~~~d~l~--------------------------------------~g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 611 AEEAHLPLFDG----IYTRIGASDDLA--------------------------------------GGKSTFMVEMEEVAL 648 (765)
T ss_dssp SSEEEECCCSE----EEEECCC--------------------------------------------CCSHHHHHHHHHHH
T ss_pred hhccceeeHHH----hhccCCHHHHHH--------------------------------------hcccHHHHHHHHHHH
Confidence 01245777665 222333333221 136899999999999
Q ss_pred HH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhcCceEEEEecChhHHHhhc
Q 035832 174 QL--VQVPDLLILDEP---LAGLDWKAR-ADVVKLLKHLKKELTILVVSHDLKEMAALV 226 (245)
Q Consensus 174 al--~~~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~tiii~tHd~~~~~~~~ 226 (245)
++ +.+|+++||||| |++||+.+. ..+++.|.+ .+.++|++||+.+++ .+|
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHH-TCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHH-Hhh
Confidence 99 999999999999 999999886 578888876 578999999998875 354
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.88 E-value=9.3e-24 Score=175.87 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=97.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-------CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-------TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-|++|++++|+||||||||||+++|+|+..+ ..|.+++++.+. ...+++++++|... + ...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~----------~~~~~i~~~~~~~~-~-~~~ 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------FRPERIREIAQNRG-L-DPD 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC----------CCHHHHHHHHHHTT-S-CHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC----------CCHHHHHHHHHHcC-C-CHH
Confidence 6899999999999999999999999996555 344777765431 11245777788753 2 334
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH-------hhCCCEEEEeC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL-------VQVPDLLILDE 186 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral-------~~~p~llllDE 186 (245)
++.+|+.+.... . . ..+++.+..++++ ..+|+++++||
T Consensus 89 ~~~~~~~~~~~~--~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 133 (231)
T 4a74_A 89 EVLKHIYVARAF--N-S--------------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 133 (231)
T ss_dssp HHHHTEEEEECC--S-H--------------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEET
T ss_pred HHhhcEEEEecC--C-h--------------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEECC
Confidence 777776653111 0 0 0011112222222 35899999999
Q ss_pred CCCCCCHH-------H-----HHHHHHHHHHhh-c-CceEEEEecChh----HHHhhccEEEEEeCC
Q 035832 187 PLAGLDWK-------A-----RADVVKLLKHLK-K-ELTILVVSHDLK----EMAALVDHSWRMDMG 235 (245)
Q Consensus 187 Pts~LD~~-------~-----~~~i~~~l~~l~-~-~~tiii~tHd~~----~~~~~~d~v~~l~~G 235 (245)
||+++|+. . ..++++.|.++. + ++|||++||+.+ .+..+||++++|++|
T Consensus 134 ~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 134 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99999984 2 236777777764 3 689999999554 488999999999875
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.87 E-value=3.5e-23 Score=203.71 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=104.3
Q ss_pred eEEEEeEEEEC-----CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRP-----PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y-----~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~ 90 (245)
.|.+++...-. +.+...+++|+||++++|++++|+||||||||||||+++++.... .|.. + +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~------v---p--- 707 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY------V---P--- 707 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC------B---S---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc------c---c---
Confidence 57777754321 112356899999999999999999999999999999998653211 1100 0 0
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.....++++.+ . +..+|+.+. ..+...++|+||+|++.
T Consensus 708 ---a~~~~i~~~d~----i----------------------------------~~~ig~~d~-l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 708 ---AEEATIGIVDG----I----------------------------------FTRMGAADN-IYKGRSTFMEELTDTAE 745 (918)
T ss_dssp ---SSEEEEECCSE----E----------------------------------EEEC-----------CCHHHHHHHHHH
T ss_pred ---chhhhhhHHHH----H----------------------------------HHhCChHHH-HHHhHHHhhHHHHHHHH
Confidence 00011111100 0 111222222 34556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhh--cCceEEEEecChhHHHhhccE
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVV-KLLKHLK--KELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~--~~~tiii~tHd~~~~~~~~d~ 228 (245)
|+++ +.+|+++||||||+|||+.....+. .+++.+. .++|+|++||+++.+ .+||+
T Consensus 746 il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 746 IIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 9999 8999999999999999999999887 7777774 368999999998765 56654
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.87 E-value=9.2e-25 Score=207.81 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=112.5
Q ss_pred ceEEEEeEEEECCCCccceeeee----------eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGV----------SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNND 84 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~v----------sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~ 84 (245)
+.+.++|+++.|+...+++++.+ +|+++. ++|+||||||||||+++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 36899999999964333455544 366654 999999999999999999999988 7999999998853
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
..... ....+++++||+||++. +++..+|.+|+.++. . .+ +.... .+|
T Consensus 86 ~~~~~-~~~~~~~~i~~v~Q~~~-l~~~~tv~e~i~~~~----------~--------~~---~~~~~-------~~s-- 133 (608)
T 3szr_A 86 LKKLV-NEDKWRGKVSYQDYEIE-ISDASEVEKEINKAQ----------N--------AI---AGEGM-------GIS-- 133 (608)
T ss_dssp EEECS-SSSCCEEEESCC---CC-CCCHHHHHTTHHHHH----------H--------HH---HCSSS-------CCC--
T ss_pred EecCC-ccccceeEEeeeccccc-CCCHHHHHHHHHHHH----------H--------Hh---cCCcc-------ccc--
Confidence 21111 11234678999999985 667789998887631 0 00 01000 011
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHh-hc--CceEEEEecChhHHH--------hh--
Q 035832 165 YKRRLALAIQLVQVPDLLILDEP------LAGLDWKARADVVKLLKHL-KK--ELTILVVSHDLKEMA--------AL-- 225 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l-~~--~~tiii~tHd~~~~~--------~~-- 225 (245)
++++.++.+....|+++|+||| |+|||+..+..+.++++++ .+ ..+++++|||++.+. .+
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 1223334444568999999999 9999999999999999996 33 378999999987332 11
Q ss_pred --ccEEEEEeCCeEEE
Q 035832 226 --VDHSWRMDMGGFLV 239 (245)
Q Consensus 226 --~d~v~~l~~G~i~~ 239 (245)
+..++++.++.++.
T Consensus 213 ~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 213 EGDRTIGILTKPDLVD 228 (608)
T ss_dssp SCCSEEEEEECGGGSS
T ss_pred cCCceEEEecchhhcC
Confidence 24577777765553
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.87 E-value=2.5e-25 Score=194.89 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=85.2
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-SKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
+||+++|++ +.++++++|+| +|+||||||||||++.|+|. ..|++| +.++|.++... ...+.+
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-------~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-------VQIEAS 65 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------------C
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-------ceEeeE
Confidence 578999964 57999999998 99999999999999999998 889999 88887665321 113458
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
++++|... ....++++|+..++.... . ..........+. +. .++++.++|||||||+.+|||++
T Consensus 66 ~~~~q~~~-~~~~ltv~Dt~g~~~~~~--~---~e~~~~l~~~l~------~~-~~~~~~~~sgg~rqrv~~ara~~--- 129 (301)
T 2qnr_A 66 TVEIEERG-VKLRLTVVDTPGYGDAIN--C---RDCFKTIISYID------EQ-FERYLHDESGLNRRHIIDNRVHC--- 129 (301)
T ss_dssp EEEEC----CCEEEEEEEEC----------------CTTHHHHHH------HH-HHHHHHHHTSSCCTTCCCCCCCE---
T ss_pred EEEecCCC-cccCcchhhhhhhhhhcC--c---HHHHHHHHHHHH------HH-HHHHHHHhCHHhhhhhhhhhhhh---
Confidence 99999864 445678887776642110 0 000000011111 11 35677899999999999999986
Q ss_pred CEEEEeCCCCC-CCHHHHHHHHHHHHHhhc--CceEEEEecChh
Q 035832 180 DLLILDEPLAG-LDWKARADVVKLLKHLKK--ELTILVVSHDLK 220 (245)
Q Consensus 180 ~llllDEPts~-LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~ 220 (245)
++++||||++ ||+... ++++++.+ +.++|+++||+.
T Consensus 130 -ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 -CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp -EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred -eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999985 999873 55555543 478999999974
No 103
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.87 E-value=2.5e-25 Score=182.53 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=105.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..... .+++++||++|+.... .....++.++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~------~~~~~ig~~~~~~~g~---~~~l~~~~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR------QGGRRIGFDVVTLSGT---RGPLSRVGLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE------TTSSEEEEEEEETTSC---EEEEEECCCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH------hhhceEEEEEEecccc---eehhhcccccCC
Confidence 78999999999999999999999999 999 999987763211 2367899999985211 110000001000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL-ALAI---QLVQVPDLLILDE--PLAGLDWKARAD 198 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv-~iAr---al~~~p~llllDE--Pts~LD~~~~~~ 198 (245)
. ..... ...++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.
T Consensus 70 ~---------------------~~~~~-~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 70 P---------------------GKREC-RVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp S---------------------SSCCE-ESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred c---------------------ccccc-ccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0 00011 24566778999999988 4455 6899999999999 899999987766
Q ss_pred HHHHHHHhhcCceEEE----EecChhHHHhhccEEEEEeCCeEEE
Q 035832 199 VVKLLKHLKKELTILV----VSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 199 i~~~l~~l~~~~tiii----~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+.+++.. ..++|+ ++|+.+ ..++|++..+.+|+++.
T Consensus 128 l~~~l~~---~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 128 VRQTLST---PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp HHHHHHC---SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEE
T ss_pred HHHHHhC---CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEE
Confidence 6666653 334443 349863 23455555556666654
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.86 E-value=1.1e-24 Score=190.98 Aligned_cols=154 Identities=16% Similarity=0.046 Sum_probs=105.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC-CCCCC-CCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN-SPEPL-PPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~-~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ....+ .+..++|+||++. .++..++++|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG-TDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT-CCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999887432110 00000 1245899999975 5667789999876
Q ss_pred cCCCCCCchhHHHHHHHHHH-HHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 035832 122 GWPRQSGSIQLKEYLALNLQ-RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200 (245)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~ 200 (245)
+... ... .+++..|+.+ .....++..++||++||||++.+|+.++| .||+.+...++
T Consensus 180 ~~~~-------------~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 180 MKAR-------------GYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHH-------------TCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHhC-------------CCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 4100 000 0122233322 22233455569999999999999994444 45555555666
Q ss_pred HHHHHhhc--CceEEEEecChh
Q 035832 201 KLLKHLKK--ELTILVVSHDLK 220 (245)
Q Consensus 201 ~~l~~l~~--~~tiii~tHd~~ 220 (245)
+.++.+.+ +.|+|++||+.+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHcCCcEEEEECCcc
Confidence 66666642 689999999854
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=2.9e-25 Score=183.64 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=111.9
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC--CcccHHHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF--VADNVLDEV 119 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~--~~~tv~e~l 119 (245)
.++|++++|+||||||||||+++|+|++.| +++|++|++. ++ ...++.++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------------~i~~v~~d~~-~~~~~~~~~~~~~ 55 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------------RVALLPMDHY-YKDLGHLPLEERL 55 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------------GEEEEEGGGC-BCCCTTSCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------------CeEEEecCcc-ccCcccccHHHhc
Confidence 578999999999999999999999998764 3789999873 33 346888887
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH----HHHHHHHHHHhhCCCEEEEeCCCCC-----
Q 035832 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY----KRRLALAIQLVQVPDLLILDEPLAG----- 190 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq----kqrv~iAral~~~p~llllDEPts~----- 190 (245)
.+.+.. ... .....+.++++.+++.+. .+.++.++|+|| +||+++|++++.+|+++++||||++
T Consensus 56 ~~~~~~-~~~-----~~~~~~~~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 56 RVNYDH-PDA-----FDLALYLEHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp HSCTTS-GGG-----BCHHHHHHHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CCCCCC-hhh-----hhHHHHHHHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 654211 000 112245566777777764 577889999997 4788999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh-h-cCceEEEEecCh
Q 035832 191 --LDWKARADVVKLLKHL-K-KELTILVVSHDL 219 (245)
Q Consensus 191 --LD~~~~~~i~~~l~~l-~-~~~tiii~tHd~ 219 (245)
||+.....+.+.+.+. . ++.|+++++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 3 468999999984
No 106
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=2.4e-21 Score=189.04 Aligned_cols=103 Identities=31% Similarity=0.387 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE
Q 035832 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV 214 (245)
Q Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii 214 (245)
.++. .+..+||....+++++.+|||||||||+||++|+.+| .+|||||||++||+...+.++++|+++++ +.|||+
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3444 6788999864469999999999999999999999999 59999999999999999999999999975 689999
Q ss_pred EecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 215 VSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 215 ~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|+||++.+ ..||+|++| ++|+++..+.
T Consensus 437 VeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 437 VEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGP 469 (842)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEEC
T ss_pred EcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecC
Confidence 99999976 579999999 7888988754
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=2.3e-24 Score=177.26 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=100.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCc-------cCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-----KPTSGSINIRGY-------NND 84 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~-------~~~ 84 (245)
+|+++|+++.|+ .+++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|++.+.+. .+.
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 589999999995 257888 899999999999999999999999999998 788887754221 110
Q ss_pred CCCCCCC---CC----CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 85 GEPNNSP---EP----LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 85 ~~~~~~~---~~----~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
..+-... .. .+++.+++++|... ...... +.... ..... .....+.++++..++.......+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~v~d~-~~~~~---~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQ-SLQGLV------VLMDI-RHPLK---DLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCT-TEEEEE------EEEET-TSCCC---HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhh-cccEEE------EEEEC-CCCCc---hhHHHHHHHHHHcCCCeEEEEec
Confidence 0000000 00 00000111111100 000000 00000 00000 11223455667778765433667
Q ss_pred CCCCChHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 035832 158 PHSLSGGYKRR-LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208 (245)
Q Consensus 158 ~~~LSgGqkqr-v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 208 (245)
+..+|+||+|| +..+++++.+|+++++|||||++|+.+.+++++.|.++..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 88999999999 8999999999999999999999999999999999988753
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.84 E-value=2.6e-22 Score=195.68 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=109.5
Q ss_pred ceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.|.+++...-.-. +...+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|. .+ +
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---p---- 641 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---P---- 641 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---S----
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---c----
Confidence 35777775421100 124689999999 99999999999999999999999997432 2221 11 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++++++| .+..+++.+++.. ...++|+++++ ++.
T Consensus 642 --a~~~~i~~~~~----i~~~~~~~d~l~~-----------------------------------~~stf~~e~~~-~~~ 679 (800)
T 1wb9_A 642 --AQKVEIGPIDR----IFTRVGAADDLAS-----------------------------------GRSTFMVEMTE-TAN 679 (800)
T ss_dssp --SSEEEECCCCE----EEEEEC----------------------------------------------CHHHHHH-HHH
T ss_pred --hhcccceeHHH----HHhhCCHHHHHHh-----------------------------------hhhhhhHHHHH-HHH
Confidence 01234555544 2223333333221 12345777765 444
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+...+.+|+++|||||++|+|+.....+ +.+++.+.+ +.++|++||+.+.+ .+||++..+.+|++..
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEE
Confidence 5556899999999999999999877775 778888754 68999999999865 5898876666666654
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.83 E-value=5.2e-21 Score=159.00 Aligned_cols=169 Identities=13% Similarity=0.028 Sum_probs=113.2
Q ss_pred cceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.|.+.+.+..... .. .+...+++.+|....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS---II-RQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH---HH-HHHHHTTCCCGGGBT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH---HH-HHHHHhcchHHHHhh--
Confidence 457899988 89999999999999999999999999988877788877553321000 00 000012222221100
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPL 188 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPt 188 (245)
+++.+. .. . ...++ ... . ....|.++.++...+.+...+|+ ++++||||
T Consensus 83 ------~~~~~~-~~-~----------------~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 ------KKLIII-DA-L----------------MKEKE-DQW-S---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------TTEEEE-EC-C----------------C-----CTT-B---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------CCEEEE-ec-c----------------ccccC-cee-e---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000000 00 0 00001 111 1 12349999999988888889999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHhh-c-CceEEEEecCh--------hHHHhhccEEEEEeCC
Q 035832 189 AGL--DWKARADVVKLLKHLK-K-ELTILVVSHDL--------KEMAALVDHSWRMDMG 235 (245)
Q Consensus 189 s~L--D~~~~~~i~~~l~~l~-~-~~tiii~tHd~--------~~~~~~~d~v~~l~~G 235 (245)
+.+ |+..+.++++.|+++. + +.|||++||+. ..+..+||++++|+..
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 9999999999999885 3 68999999999 5588999999999853
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.83 E-value=6.7e-22 Score=176.77 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=100.1
Q ss_pred EeEEEECCCCccceeeeeeE-------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSF-------SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl-------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+++++|.....+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~------- 164 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF------- 164 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-------
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-------
Confidence 34555553323455677766 67889999999999999999999999999987 5666554333211
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
......++++|... ..... . ..+ +||
T Consensus 165 -~~~~~~~~v~q~~~-~~~~~---------------~---------------------------------~~~----~La 190 (356)
T 3jvv_A 165 -VHESKKCLVNQREV-HRDTL---------------G---------------------------------FSE----ALR 190 (356)
T ss_dssp -CCCCSSSEEEEEEB-TTTBS---------------C---------------------------------HHH----HHH
T ss_pred -hhhccccceeeeee-ccccC---------------C---------------------------------HHH----HHH
Confidence 01223445555431 00000 0 000 999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCC
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
+||.++|++|++|||| |+++.+.+.+. ...+.+||+++|+.+.+ ..|||++.|..|
T Consensus 191 ~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 191 SALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999999999999999 76664444333 23478999999999977 789999888543
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.83 E-value=3.4e-22 Score=178.36 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=102.4
Q ss_pred ceeeee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----ce-EEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 33 DILNGV-SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTS----GS-INIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 33 ~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~----G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |++++++.. .++++++++|
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----------~~~~i~~i~q 187 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----------RPERIREIAQ 187 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----------CHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----------CHHHHHHHHH
Confidence 356665 6899999999999999999999999999998 6776 67 888875431 1356888898
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-------h
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-------Q 177 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-------~ 177 (245)
.+. + ...++.+|+.+.... -|.+++|++.++++++ .
T Consensus 188 ~~~-~-~~~~v~~ni~~~~~~-----------------------------------~~~~~~~~l~~~~~~~~~lS~G~~ 230 (349)
T 1pzn_A 188 NRG-L-DPDEVLKHIYVARAF-----------------------------------NSNHQMLLVQQAEDKIKELLNTDR 230 (349)
T ss_dssp TTT-C-CHHHHGGGEEEEECC-----------------------------------SHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HcC-C-CHHHHhhCEEEEecC-----------------------------------ChHHHHHHHHHHHHHHHHhccccC
Confidence 864 2 334666666553110 0334555555555555 7
Q ss_pred CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHhhc--CceEEEEecChhHHH
Q 035832 178 VPDLLILDEPLAGLDWKA------------RADVVKLLKHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~------------~~~i~~~l~~l~~--~~tiii~tHd~~~~~ 223 (245)
+|+++|+||||+++|+.. ..+++..|.++.+ ++|||+++|......
T Consensus 231 ~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 231 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp CEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred CCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 899999999999999862 3556666666643 689999999876554
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.3e-22 Score=181.32 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=99.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|.++||+++|++ +.+++++||+| +|+||||||||||+++|+|+..|..| .+|..+.... ...
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-----t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-----TVQ 73 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC----------CCE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-----cee
Confidence 46999999999964 56999999998 99999999999999999999987665 1332221110 111
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...+++++|.+. .+..+|++|++.++.... . ......+.+.++ ..++.+++||++||||+
T Consensus 74 ~~~i~~v~q~~~-~~~~Ltv~Dt~g~~~~~~-~-----~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal 133 (418)
T 2qag_C 74 VEQSKVLIKEGG-VQLLLTIVDTPGFGDAVD-N-----SNCWQPVIDYID-------------SKFEDYLNAESRVNRRQ 133 (418)
T ss_dssp EEEEECC-------CEEEEEEECC-----------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCC
T ss_pred eeeEEEEEecCC-cccceeeeechhhhhhcc-c-----hhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHh
Confidence 346899999864 556788888887752210 0 000011111111 13455677899999999
Q ss_pred hhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 176 VQVPD---LLILDEPL-AGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 176 ~~~p~---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
+.+|+ +|++|||| .+||+... ++++.+..+.+||+|.|-.+.
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccC
Confidence 99999 99999999 69999874 344455556777777776553
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.81 E-value=2.9e-20 Score=160.41 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=103.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHH-
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEV- 119 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l- 119 (245)
.+++|++++|+||||||||||++.+++... .|.++ .|.+.. ....+.|+..+.. . ..+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~----------~~~~v~~~~~e~~-~---~~~~~r~~ 88 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL----------PTGPVIYLPAEDP-P---TAIHHRLH 88 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC----------CCCCEEEEESSSC-H---HHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC----------CCccEEEEECCCC-H---HHHHHHHH
Confidence 478999999999999999999999998664 56653 343210 1245777765431 1 1222222
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH--
Q 035832 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA--GLDWKA-- 195 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts--~LD~~~-- 195 (245)
.++... . .....++++.+++.+. .++++..||+||+|++ ++++.+|+++|+||||+ ++|+..
T Consensus 89 ~~g~~~---~-------~~~~~~~~~~l~l~~~-~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 89 ALGAHL---S-------AEERQAVADGLLIQPL-IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp HHHTTS---C-------HHHHHHHHHHEEECCC-TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred HHHhhc---C-------hhhhhhccCceEEeec-CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchH
Confidence 122110 0 1123456778888765 5889999999998865 68889999999999999 999854
Q ss_pred -HHHHHHHHHHhh-c-CceEEEEecChhHH
Q 035832 196 -RADVVKLLKHLK-K-ELTILVVSHDLKEM 222 (245)
Q Consensus 196 -~~~i~~~l~~l~-~-~~tiii~tHd~~~~ 222 (245)
..++++.|.++. + ++|||+++|+....
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 478888888874 3 69999999998765
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.81 E-value=9.7e-20 Score=147.10 Aligned_cols=82 Identities=27% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
..+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++.++.++|++||+... ..+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCEE
Confidence 356788999999999999999975 46999999999999999999999999998777899999999765 5789999
Q ss_pred EEE--eCCe
Q 035832 230 WRM--DMGG 236 (245)
Q Consensus 230 ~~l--~~G~ 236 (245)
+.+ .+|.
T Consensus 137 ~~v~~~~g~ 145 (173)
T 3kta_B 137 IGVSMRDGV 145 (173)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCE
Confidence 865 4553
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=1.2e-23 Score=188.56 Aligned_cols=164 Identities=16% Similarity=0.044 Sum_probs=111.8
Q ss_pred eeeeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----ceEEEc----CccCCCCCCCCCCCCCCCcEEEEe
Q 035832 34 ILNGVSFSLPE--KSFGLIFGRSGSGKTTLLQLLAGLSKPTS----GSINIR----GYNNDGEPNNSPEPLPPEKVGIVF 103 (245)
Q Consensus 34 il~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~----G~i~~~----g~~~~~~~~~~~~~~~~~~i~~v~ 103 (245)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+++++ |.++ .. ..... .+|++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~----~~~~~-~~I~~~~ 230 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AM----QYSDY-PQMALGH 230 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SS----CTTTH-HHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cC----ChhHH-HHHHHHH
Confidence 35679999999 99999999999999999999999999999 888774 2222 10 01111 3467777
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-hCCCEE
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-QVPDLL 182 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-~~p~ll 182 (245)
|++. .+..++.+|+.++.. .. . ++.+..+|+|++|+..+++++. .+|+++
T Consensus 231 q~~~--~~~~t~~~nl~~~~~----~~--~---------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 231 QRYI--DYAVRHSHKIAFIDT----DF--I---------------------TTQAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH--HHHHHHCSSEEEESS----CH--H---------------------HHHHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH--HHHHhccCCEEEEeC----Cc--h---------------------HHHHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 6642 234566666654310 00 0 0111234566778888888774 699999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe
Q 035832 183 ILDE---PL------AGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 183 llDE---Pt------s~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+||| |+ .++|+..+..+.+.|.++.+ +.+||+++|. ....++++++..++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9999 65 58999999999999988743 6899999985 35566777766554
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.78 E-value=1.8e-20 Score=156.91 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=88.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+.-.-..++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..+..++|+||++. .|..+
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~--------~e~~gi~y~fq~~~-~f~~~ 77 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP--------GEVHGEHYFFVNHD-EFKEM 77 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT--------TCCBTTTBEECCHH-HHHHH
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc--------ccccCceEEECCHH-HHHHH
Confidence 334456789999999999999999999999999986 68999887654311 12456899999874 44444
Q ss_pred cH----HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 114 NV----LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 114 tv----~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
++ .|++.+... ..+ .| +++ +..++..++++|||
T Consensus 78 ~~~~~f~E~~~~~~~-~yg--------------------------------~~---~~~---v~~~l~~G~illLD---- 114 (219)
T 1s96_A 78 ISRDAFLEHAEVFGN-YYG--------------------------------TS---REA---IEQVLATGVDVFLD---- 114 (219)
T ss_dssp HHTTCEEEEEEETTE-EEE--------------------------------EE---HHH---HHHHHTTTCEEEEE----
T ss_pred HhcCHHHHHHHHHhc-cCC--------------------------------CC---HHH---HHHHHhcCCeEEEE----
Confidence 44 233322100 000 00 111 22233347999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
||+.++.++++.+. ++.||+++||+++++..
T Consensus 115 -LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 115 -IDWQGAQQIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp -CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred -ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence 99999999998876 46899999999988765
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=4e-20 Score=168.20 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.|++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++..... ..
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~----~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQP----GV 79 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCS----SC
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCc----cc
Confidence 467777 888964 45 9999999999999 9999999999999999999994 23333321111 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--chhHHHHHHHHHHHHHHHc-CCCC---ccCCCCC----------
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--SIQLKEYLALNLQRAINWV-GLDG---TSLDKDP---------- 158 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~~~---------- 158 (245)
.++.++|++|++. .++.+|+.||+.++...... .............+++... ++.. ...+.++
T Consensus 80 ~~~~i~~v~Q~~~-l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 80 QLQSNTYDLQESN-VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred eEeeEEEEeecCc-cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 2357999999974 55678999999876321100 0001122334455556554 4431 0112221
Q ss_pred -CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhc-CceEEEEecCh
Q 035832 159 -HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKK-ELTILVVSHDL 219 (245)
Q Consensus 159 -~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~-~~tiii~tHd~ 219 (245)
+.|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ +.. +.+|+.+|.|-
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 2466555 7999999999999999999999999999999999986 654 58888888753
No 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.77 E-value=1.9e-20 Score=167.68 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=111.3
Q ss_pred EEEeEEEE---CCCCcccee---------eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC
Q 035832 19 EVRDVSYR---PPGTQVDIL---------NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE 86 (245)
Q Consensus 19 ~~~~l~~~---y~~~~~~il---------~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 86 (245)
++++++|+ |+....++| +++||++++|++++|+||||||||||+++|+|+++|++|.|+++|..- .
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--L 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC--C
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc--c
Confidence 56677776 743123445 999999999999999999999999999999999999999999987421 1
Q ss_pred CCCCCCCCCCCcEEEEe-cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 87 PNNSPEPLPPEKVGIVF-QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~-Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
. ....+..++|++ |++. . + ++++.
T Consensus 215 ~----~~~~~~~v~~v~~q~~~-~--------------------------------------~------------~~~~~ 239 (361)
T 2gza_A 215 F----LPDHPNHVHLFYPSEAK-E--------------------------------------E------------ENAPV 239 (361)
T ss_dssp C----CTTCSSEEEEECC-------------------------------------------------------------C
T ss_pred C----ccccCCEEEEeecCccc-c--------------------------------------c------------ccccc
Confidence 1 111356789998 5531 0 0 01222
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
.++..|+.++..+|+.+++|||.. .++.+.|..+..+ .|++.++|+.+ +...++|+..+..+
T Consensus 240 t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 240 TAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 478888999999999999999986 3456677777666 57899999965 67778888777654
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.77 E-value=2.5e-22 Score=163.10 Aligned_cols=153 Identities=18% Similarity=0.029 Sum_probs=96.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.++..... .+..++|++|++. ...++.+++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~------~~~~~~~~~~~~~---~~~~v~~~l~ 73 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK------HGRIDPWLPQSHQ---QNRMIMQIAA 73 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC------SSCCCTTSSSHHH---HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh------cccccCCccchhh---hhHHHHHHHH
Confidence 4789999999999999999999999998 788999999876532110 1233567777642 3567888876
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 035832 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i 199 (245)
+..... ........++.++..+++.... .+.++..+|+|++|++++||++..+|+++ +|+...+.+
T Consensus 74 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 74 DVAGRY-----AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHHHH-----HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HHHHHH-----hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 531000 0000000000001111221110 13456789999999999999999999876 689888888
Q ss_pred HHHHHHhhcCceEEEEec
Q 035832 200 VKLLKHLKKELTILVVSH 217 (245)
Q Consensus 200 ~~~l~~l~~~~tiii~tH 217 (245)
++.+..+.....+++.|+
T Consensus 141 ~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp HHHTTCCGGGGGGEEECT
T ss_pred HHHHhccCcccccEEECC
Confidence 888776643223344454
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.76 E-value=5.9e-20 Score=165.18 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=95.5
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++.. ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--------~~~~~~~~v~Q~~------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--------VFKHKKSIVNQRE------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--------CCCCSSSEEEEEE------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--------hhccCceEEEeee------
Confidence 455554 7899999999999999999999999999997 8999877654321 1245677888741
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
+|++ +..+ +.+|+++|..+|+++++|||+ |
T Consensus 191 ----------------------------------~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d 220 (372)
T 2ewv_A 191 ----------------------------------VGED-------TKSF------ADALRAALREDPDVIFVGEMR---D 220 (372)
T ss_dssp ----------------------------------BTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---S
T ss_pred ----------------------------------cCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---C
Confidence 1111 1123 469999999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
++.... .++....+.+++.++|+.+ +...+||++.|
T Consensus 221 ~e~~~~---~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 221 LETVET---ALRAAETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHH---HHHHHTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHH---HHHHHhcCCEEEEEECcch-HHHHHHHHHHh
Confidence 766443 4444445689999999966 66778887544
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.75 E-value=3.4e-22 Score=177.51 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=121.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++++++.|+. ..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++............+
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 5888999998853 46899999999999999999999999999999999999999999999998774322100011235
Q ss_pred CcEEEEecCCCCCCCcc------------cHHHHHH-h---cCC--------------------------CCCCchhHHH
Q 035832 97 EKVGIVFQFPERYFVAD------------NVLDEVI-F---GWP--------------------------RQSGSIQLKE 134 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~------------tv~e~l~-~---~~~--------------------------~~~~~~~~~~ 134 (245)
.+++++||++. .|... ++.|.+. + +.. ..........
T Consensus 107 ~~i~~v~q~~~-~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 107 TRMARLAIDRN-AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGSTTGGGCTT-EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhheeeccCcc-cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 67999999975 33321 1222221 0 000 0000000000
Q ss_pred HHHHHHHHHHHHcCCCCccCCC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 135 YLALNLQRAINWVGLDGTSLDK-DPHSLSGGYKRRLALAIQLVQ------VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgGqkqrv~iAral~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
.....+.+....+.++ . .|. ....+|+|++|++..|++++. .|+++. +|++|..+.+++++.|.++.
T Consensus 186 ~i~~~i~~~~~ivvlN-K-~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 186 GIKKGIFELADMIAVN-K-ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -CCTTHHHHCSEEEEE-C-CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEEE-c-hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111222233332 2 353 345689999999999999987 688887 99999999999999998864
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.74 E-value=1.1e-22 Score=179.26 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCcceEEEcCccCCCCCCCC-----------CCCCCCCcEEEE---e
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS--------KPTSGSINIRGYNNDGEPNNS-----------PEPLPPEKVGIV---F 103 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~~~~~~~~~~-----------~~~~~~~~i~~v---~ 103 (245)
++++|+|+||||||||+|.|+|+. .|+.|+|.++|.++....... .....++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999998875421100 011223457777 6
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhH-H-HHH--HHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQL-K-EYL--ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~-~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
|++. .++..++.|+..++.+.... ... . ... ...+..++..+++.+. .++. .+||+||+||+..+++++.+|
T Consensus 85 q~~~-~~~~~~v~E~~~l~~p~~~~-~~~~~~~~~~~~~~l~~~l~~vd~~~~-~~~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 85 DKGN-IQFDRLVIECTGMADPGPII-QTFFSHEVLCQRYLLDGVIALVDAVHA-DEQM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHTS-CCCSEEEEEEETTCCHHHHH-HHHHHSHHHHHHEEEEEEEEEEETTTH-HHHH-HHCHHHHHHHHTCSEEEEECT
T ss_pred hcCC-CCCCEEEEeCCCCCCHHHHH-HHHhcCccccCeEEECCEEEEEEHHHH-HHHH-hhchHHHHHHHhCCEEEEECc
Confidence 7764 34566777776654210000 000 0 000 0011122344455543 2332 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhh
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAAL 225 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~ 225 (245)
+++ ||| +++.+.|++++.+.+|+++||+...+..+
T Consensus 161 dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 161 DVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp TTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred ccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 987 999 77888888887678999999965444433
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.73 E-value=9.3e-18 Score=138.51 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=97.9
Q ss_pred ceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++ +..+. .+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~------------------------i~~~~--~~~ 58 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAY------------------------VDTEG--GFS 58 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEE------------------------EESSC--CCC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEE------------------------EECCC--CCC
Confidence 45777765 789999999999999999999999999 22222222 22221 111
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY--KRRLALAIQLVQV-PDLLILDEPL 188 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqrv~iAral~~~-p~llllDEPt 188 (245)
...+.+..... .. .. +++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||
T Consensus 59 ~~~~~~~~~~~-----~~-~~--------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 59 PERLVQMAETR-----GL-NP--------EEALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHTT-----TC-CH--------HHHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhc-----CC-Ch--------HHHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 11122211100 00 00 1112221 122344553 5788888999986 9999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHhhc--CceEEEEecChh-------------HHHhhccEEEEEeCC
Q 035832 189 AGLDWKA--------RADVVKLLKHLKK--ELTILVVSHDLK-------------EMAALVDHSWRMDMG 235 (245)
Q Consensus 189 s~LD~~~--------~~~i~~~l~~l~~--~~tiii~tHd~~-------------~~~~~~d~v~~l~~G 235 (245)
+.+|+.. ..++++.|+++.+ +.|||+++|... .+...||++++|+..
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999743 3445555777643 689999999865 567899999999754
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.73 E-value=5.1e-23 Score=167.39 Aligned_cols=167 Identities=15% Similarity=0.060 Sum_probs=108.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|++++|+||||||||||+++|++ |.+|.++++|.++... ...++++|... .....++++++.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~----------~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM----------VVGGYRPPWES-DELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT----------CCTTCCCGGGC-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh----------hccccccCccc-hhHHHHHHHHHHHHHH
Confidence 68999999999999999999997 6789999998765321 12356666541 2234567776654200
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL--SGGYKRRLALAI------QLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGqkqrv~iAr------al~~~p~llllDEPts~LD~~~~ 196 (245)
.........+++.+. ... ..+...++ |+||+|++.++. +++.+|+...+|+ +||+...
T Consensus 68 ---------~~~~~~~~~ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 68 ---------NFLLAQNDVVLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------HHHHTTCEEEEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------HHHhcCCcEEEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 000000000000000 000 00111234 888888888888 8999998888884 8999988
Q ss_pred HHHHHHHHHhhc-CceEEEEecC-hhHHHhhccEEEEEeCCeEEEecc
Q 035832 197 ADVVKLLKHLKK-ELTILVVSHD-LKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 197 ~~i~~~l~~l~~-~~tiii~tHd-~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
.. ++.+..+.+ +.++|.+||. ++.+..+||+|+ ++|+++.++.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~ 178 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMA 178 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeec
Confidence 88 888888754 4799999999 999999999998 9999887653
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.72 E-value=3e-17 Score=147.32 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=69.8
Q ss_pred CCCCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 156 KDPHSLSGGYKRRL------ALAIQLVQV-PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 156 ~~~~~LSgGqkqrv------~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++.++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56689999999988 567899999 999999999999999999999999999865578999999987 5789999
Q ss_pred EEEEe
Q 035832 229 SWRMD 233 (245)
Q Consensus 229 v~~l~ 233 (245)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.71 E-value=6.8e-18 Score=150.55 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEc-CccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIR-GYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~-g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
-++++++.+ +|++++|+||||||||||+|+|+|+.+ |++|+|.++ |..... .....+++++|++. ++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t--------t~~~~i~~v~q~~~-l~d 274 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT--------TTAARLYHFPHGGD-VID 274 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------CCCEEEECTTSCE-EEE
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc--------eEEEEEEEECCCCE-ecC
Confidence 467777754 799999999999999999999999999 999999986 644210 12467999999874 555
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..++.++ ++.. . ........+.++++.+++..+ .++++.+|| ||+||++||+++ +
T Consensus 275 tpgv~e~---~l~~--l---~~~e~~~~~~e~l~~~gl~~f-~~~~~~~lS-G~~~r~ala~gl---------------i 329 (358)
T 2rcn_A 275 SPGVREF---GLWH--L---EPEQITQGFVEFHDYLGHCKY-RDCKHDADP-GCAIREAVENGA---------------I 329 (358)
T ss_dssp CHHHHTC---CCCC--C---CHHHHHHTSGGGGGGTTCSSS-TTCCSSSCT-TCHHHHHHHHTS---------------S
T ss_pred cccHHHh---hhcC--C---CHHHHHHHHHHHHHHcCCchh-cCCCcccCC-HHHHHHHHHhcC---------------C
Confidence 6677773 2111 1 122334556788899999876 699999999 999999999875 3
Q ss_pred CHHHHHHHHHHHHHhh
Q 035832 192 DWKARADVVKLLKHLK 207 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~ 207 (245)
++.-.+...+++.++.
T Consensus 330 ~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 330 AETRFENYHRILESMA 345 (358)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4555555555666654
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.70 E-value=6.8e-21 Score=161.41 Aligned_cols=144 Identities=21% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+... .....+++++|++. .++..++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~--------~~~~~i~~~~~~~~-~~~~~~v~~~l~ 96 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST--------EVGEMAKQYIEKSL-LVPDHVITRLMM 96 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC--------HHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC--------hHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 47999999999999999999999 9999999999887754210 01234556677764 566778888886
Q ss_pred hcCCC-------CCCchhHHHHHHHHHHHHHH--HcC------------CCCccCCCCCCCCChHHHHHHHHHHHH-hhC
Q 035832 121 FGWPR-------QSGSIQLKEYLALNLQRAIN--WVG------------LDGTSLDKDPHSLSGGYKRRLALAIQL-VQV 178 (245)
Q Consensus 121 ~~~~~-------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~~LSgGqkqrv~iAral-~~~ 178 (245)
..+.. ..+...... .+..+.. .++ +... .++++.+||| |+ +|+ +.+
T Consensus 97 ~~l~~~~~~~~il~g~~~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~-~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 97 SELENRRGQHWLLDGFPRTLG----QAEALDKICEVDLVISLNIPFETLKDRL-SRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp HHHHTCTTSCEEEESCCCSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHH-HTEEEETTTT----EE---EETTTSC
T ss_pred HHHHhcCCCeEEEECCCCCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHH-HcCCCcCCCC----Cc---cccccCC
Confidence 52100 000000011 1112211 122 2222 4677889999 66 788 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHhhc
Q 035832 179 PDLLILD----EPLAGLDWKARADVVKLLKHLKK 208 (245)
Q Consensus 179 p~llllD----EPts~LD~~~~~~i~~~l~~l~~ 208 (245)
|++++|| |||++||+.+.+.+.+.++.+.+
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999999 99999999999999999988753
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.70 E-value=1.9e-19 Score=159.27 Aligned_cols=170 Identities=14% Similarity=0.008 Sum_probs=111.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC--CCCcEEEEecCCCCCCCcccHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL--PPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~--~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
..++|++++|+||||||||||++.|+|+++|++|+|.+.|.++........... .+..+.+++|... .++..++++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~-~~p~~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG-ADPAAVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT-CCHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc-CCHHHHHHHH
Confidence 347899999999999999999999999999999999999988743211000000 0124669999874 5677899999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~ 198 (245)
+.++...... . -+++..|+.+. ....+.+| -.++|++..++++++||.++. ..
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~-~~~l~~eL-------~~i~ral~~de~llvLDa~t~-------~~ 256 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSET-NRNLMDEM-------KKIARVTKPNLVIFVGDALAG-------NA 256 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCT-TTCHHHHH-------HHHHHHHCCSEEEEEEEGGGT-------TH
T ss_pred HHHHHhccch----------h--hHHhhccchhH-HHHHHHHH-------HHHHHHhcCCCCEEEEecHHH-------HH
Confidence 9765110000 0 01222343321 12233333 348999998888888886654 35
Q ss_pred HHHHHHHhhc--CceEEEEecChh---------HHHhhccEEEEEeCCeEE
Q 035832 199 VVKLLKHLKK--ELTILVVSHDLK---------EMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 199 i~~~l~~l~~--~~tiii~tHd~~---------~~~~~~d~v~~l~~G~i~ 238 (245)
+.+.++.+.+ +.|+|++||.-. .+....-.|.++..|+.+
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 5555666652 589999999532 233445678888888765
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.69 E-value=3.4e-20 Score=147.70 Aligned_cols=89 Identities=15% Similarity=-0.007 Sum_probs=71.4
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+.+++++.|++ +.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... .. .+
T Consensus 9 ~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~------~~-~~ 78 (158)
T 1htw_A 9 PDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY------NI-AG 78 (158)
T ss_dssp CSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE------EE-TT
T ss_pred CCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec------cC-CC
Confidence 34456777853 56899999999999999999999999999999999999 99999999988763210 01 12
Q ss_pred EEEEecCCCCCCCcccHHHHHHh
Q 035832 99 VGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
++||++. ++ .+|+.||+.+
T Consensus 79 --~~~q~~~-l~-~ltv~e~l~~ 97 (158)
T 1htw_A 79 --KMIYHFD-LY-RLADPEELEF 97 (158)
T ss_dssp --EEEEEEE-CT-TCSCTTHHHH
T ss_pred --cceeccc-cc-cCCcHHHHHH
Confidence 7999874 55 7899999854
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=3.2e-17 Score=137.25 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=80.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKP-----TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p-----~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+. +...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~--------------------------~~~~ 73 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT--------------------------FRPE 73 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--------------------------CCHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC--------------------------cCHH
Confidence 478999999999999999999999999 5665 455666654321 0000
Q ss_pred cHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 035832 114 NVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR-LALAIQLV--QVPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~iAral~--~~p~llllDEPts 189 (245)
.+.+... +++ . . +++++.+.+ ....+..+... +.-+..++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g~-----~--~--------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYGL-----S--G--------SDVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTTC-----C--H--------HHHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcCC-----C--H--------HHHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 0111000 110 0 0 001111100 11234443322 22222333 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHhh-c-CceEEEEecChhHHHh-------------------hccEEEEEeCC
Q 035832 190 GLDWK-------A-----RADVVKLLKHLK-K-ELTILVVSHDLKEMAA-------------------LVDHSWRMDMG 235 (245)
Q Consensus 190 ~LD~~-------~-----~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~-------------------~~d~v~~l~~G 235 (245)
.+|+. . ...++..|.++. + ++|||+++|....... +||.+++|+.+
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 344555555554 2 6899999997665433 89999999865
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.68 E-value=2.5e-21 Score=176.35 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=101.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++..............
T Consensus 144 ~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 45555655553 23467777 53 7999999999999999999999999999999999999877632111000011234
Q ss_pred cEEEEe---------cCCCCCC-Cc----ccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC
Q 035832 98 KVGIVF---------QFPERYF-VA----DNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162 (245)
Q Consensus 98 ~i~~v~---------Q~~~~~~-~~----~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 162 (245)
++++.| |+|...+ .. .|+.+++.++..... .......... .+.+.+..+++... ..+.+||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~---~~~~~LS 295 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPF---LISSSLL 295 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHH---HHHHHEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHH---HHHHHHH
Confidence 566655 9886321 22 588888876411000 0000000001 12234667788753 2678999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEE
Q 035832 163 GGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llll 184 (245)
|||+|| |||+|+.+|++..-
T Consensus 296 gg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 296 GVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHH--hhhhhcCCCCccCC
Confidence 999999 99999999999763
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.67 E-value=1.6e-18 Score=159.92 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=111.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~ 112 (245)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... .....+ .+++++|++|++. .++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~-~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG-ADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT-CCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC-cCHH
Confidence 478999999999999999999999999999999999999999998776532100 000000 1356999999874 5567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-hCC-CEEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-QVP-DLLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-~~p-~llllDEPts~ 190 (245)
.++++|+.++...... .+ +++..|..+. .. .|-.-.+|++.+++++. ..| .+||...|++|
T Consensus 362 ~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~-~~----~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 362 SVIFDAIQAAKARNID----------VL--IADTAGRLQN-KS----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHHHTTCS----------EE--EECCCCSCCC-HH----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHHHhcCCC----------EE--EEeCCCccch-hh----hHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 8999999875211000 00 0111222111 01 11112347888888764 456 35555558888
Q ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEecChhH----------HHhhccEEEEEeCCeEE
Q 035832 191 LDWKARADVVKLLKHLKK--ELTILVVSHDLKE----------MAALVDHSWRMDMGGFL 238 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~----------~~~~~d~v~~l~~G~i~ 238 (245)
.|.. +.++.+.+ +.|.+++|| ++. +..+.-.|.++..|+-+
T Consensus 425 q~al------~~ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 425 QNAV------SQAKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHH------HHHHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHH------HHHHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 6544 33344432 578999999 443 22334466777666543
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.6e-16 Score=140.46 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=77.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG-LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
..+.|.||||+|||||++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+. . .... .
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~------~~~~~~~~~~~~~~-~--~~~~--------~ 99 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS------NRKLELNVVSSPYH-L--EITP--------S 99 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------CCEECSSE-E--EECC--------C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc------cccceeeeecccce-E--EecH--------h
Confidence 3489999999999999999999 88999999999987653211 11456888888752 1 1100 0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 204 (245)
. .... .....++.+.++.+..++.. .. +||| +..+|+++|+|||++ ||+..+..+++.+.
T Consensus 100 ~-~~~~-~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 100 D-MGNN-DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp -----C-CHHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred h-cCCc-chHHHHHHHHHHHHhccccc-----cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 0 0000 01111222222222223322 12 5676 788999999999999 99999999999999
Q ss_pred HhhcCceEEEEecChhH
Q 035832 205 HLKKELTILVVSHDLKE 221 (245)
Q Consensus 205 ~l~~~~tiii~tHd~~~ 221 (245)
+...+.++|++||+++.
T Consensus 160 ~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HSTTTEEEEEEESCSCS
T ss_pred hhcCCCEEEEEeCCHHH
Confidence 87767899999999753
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.64 E-value=3.7e-19 Score=165.86 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.++++++|.+++|++++|+||||||||||+++|+|+++|++|.|+++|....... ....+++..|... ....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-------~~~~v~~~~r~~~-~~~~ 319 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-------HENWIAEVTRTGM-GEGE 319 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-------CSSEEEEECBCCS-SSCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-------CCCeEEEEeeccc-ccCC
Confidence 4788999999999999999999999999999999999999999999876421110 1234666665532 1112
Q ss_pred ccHHHHHHhcCCC--------CCCchhHHHHHH--------------HHHHHHHHHcCC-----CCc---cCC---CCCC
Q 035832 113 DNVLDEVIFGWPR--------QSGSIQLKEYLA--------------LNLQRAINWVGL-----DGT---SLD---KDPH 159 (245)
Q Consensus 113 ~tv~e~l~~~~~~--------~~~~~~~~~~~~--------------~~~~~~l~~~~l-----~~~---~~~---~~~~ 159 (245)
.+..+.+...+.. ............ ..+.++++++.. ... .++ ....
T Consensus 320 ~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 320 IDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp BCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred cCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 3444444322100 000000000000 012233333322 111 011 2334
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE--EecChhHHHhhccE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV--VSHDLKEMAALVDH 228 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii--~tHd~~~~~~~~d~ 228 (245)
.+|+||+||+++|. + | |+|||+.....+++.+.++.. +.|+++ +||+++++...|+.
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 68999999987752 1 7 999999988888887777754 578875 99999999888753
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.62 E-value=2.7e-17 Score=132.47 Aligned_cols=112 Identities=15% Similarity=0.041 Sum_probs=75.6
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
+|++++|+.++|+||||||||||+++|++.+.|.+|.. +.| .+..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~----------------------~~~-----------~~~~~~ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR----------------------GYF-----------FDTKDL 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC----------------------CCE-----------EEHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe----------------------EEE-----------EEHHHH
Confidence 56778899999999999999999999999886654411 001 111111
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARA 197 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~ 197 (245)
+.. +......-. .. -+...+.+|++|+||||++ ++|+..+.
T Consensus 79 ~~~------------------~~~~~~~~~-----~~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~ 120 (180)
T 3ec2_A 79 IFR------------------LKHLMDEGK-----DT---------------KFLKTVLNSPVLVLDDLGSERLSDWQRE 120 (180)
T ss_dssp HHH------------------HHHHHHHTC-----CS---------------HHHHHHHTCSEEEEETCSSSCCCHHHHH
T ss_pred HHH------------------HHHHhcCch-----HH---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHH
Confidence 110 001111000 00 1122345999999999985 99999999
Q ss_pred HHHHHHHHhh-cCceEEEEecChhH
Q 035832 198 DVVKLLKHLK-KELTILVVSHDLKE 221 (245)
Q Consensus 198 ~i~~~l~~l~-~~~tiii~tHd~~~ 221 (245)
.+.+++.... +++++|++||....
T Consensus 121 ~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 121 LISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChh
Confidence 9999998875 56899999997643
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.62 E-value=2.3e-18 Score=150.58 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=84.8
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCC----CCc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERY----FVA 112 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~----~~~ 112 (245)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++..... ......+||++|.|... ++.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~----~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR----LIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE----EEEETTTEEEESSCCCSSCCGGGT
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE----EEEcCCCcEEEECcCcCcCccccc
Confidence 345679999999999999999999999 99999999999 8877643211 01113589999998532 245
Q ss_pred ccHHHHHHhcCCC-------CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 113 DNVLDEVIFGWPR-------QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 113 ~tv~e~l~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+|+ +|+...++. ..... ...+...++.++++.++|.+...++++..|||.++|++.|||
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~~~-~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPDCT-HTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTTCC-SSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCH-HHHHHHHHHHHHccCCCCCCC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788 888322210 00000 001123457889999999852368899999999999999986
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.59 E-value=4.7e-17 Score=148.07 Aligned_cols=160 Identities=20% Similarity=0.153 Sum_probs=97.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... ....+|+++++.. ...+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT---------l~p~~G~V~~~~~---~~~~ 208 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT---------LSPNLGVVEVSEE---ERFT 208 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS---------SCCEEEEEECSSS---CEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce---------ecceeeEEEecCc---ceEE
Confidence 479999999999999999999999999999999853 333333211 1235777776531 1112
Q ss_pred HHHHHHhcC--CCCCCchhHHHHH--HHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGW--PRQSGSIQLKEYL--ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~--~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
+.|..-+.. ...... . .... .+++..++..+++. ++++.+||+||+|++.+|++|+..|.++++ +.
T Consensus 209 l~DtpGli~~a~~~~~L-~-~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 209 LADIPGIIEGASEGKGL-G-LEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp EEECCCCCCCGGGSCCS-C-HHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred EEeccccccchhhhhhh-h-HHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 222111100 000000 0 0111 01122223333442 456778999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHH-hhc-CceEEEEe-cChhHHH
Q 035832 191 LDWKARADVVKLLKH-LKK-ELTILVVS-HDLKEMA 223 (245)
Q Consensus 191 LD~~~~~~i~~~l~~-l~~-~~tiii~t-Hd~~~~~ 223 (245)
+|+... ..++.+.+ +.+ +.+++++| |.-+-+.
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999876 44444443 443 45666555 5433333
No 138
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.59 E-value=2.6e-17 Score=143.84 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=73.9
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCC--------
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPER-------- 108 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~-------- 108 (245)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++..... ....+.+||++|.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~----~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ----LLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC----EEECTTSCEEESSCSSTTCCCCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE----EEEcCCCCEEEECcCCCccCCCcC
Confidence 456789999999999999999999999999999999999 8887754321 1112468999999852
Q ss_pred -------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 109 -------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 109 -------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
+|+.+|+ +|+.|+... .. .+...++.++++.++|.....++++++||+
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~~~-~~-----~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSDCN-HV-----DEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTTCC-SS-----SCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCCCc-CC-----CCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3667778 888775211 11 112235778899999962236888888885
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.58 E-value=1.7e-15 Score=119.22 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=35.1
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-Cce-EEEEecC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELT-ILVVSHD 218 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~t-iii~tHd 218 (245)
++.+|++|++|||++ +|+..++.+++++..+.+ +++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999998 666668899999998764 577 8888884
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.57 E-value=1.2e-18 Score=140.46 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=80.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCC-CcEE----EEecCCCCCCCcccHHH
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPP-EKVG----IVFQFPERYFVADNVLD 117 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~-~~i~----~v~Q~~~~~~~~~tv~e 117 (245)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++....... ...++ +.+| +++|++. .|.. +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~-~d~~r~~~ig~~~~~~~~~~~-~~i~----~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEG-KDSWKIYNSGADVVIASPVKL-AFIR----R 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEE-EEEE----E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccc-hhHHHHHhcCCceEEECCCcE-EEEe----c
Confidence 589999999999999999999999998 899999998754321000 01112 2456 7888763 2200 0
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHH-c-CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEE-------EEeCCC
Q 035832 118 EVIFGWPRQSGSIQLKEYLALNLQRAINW-V-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL-------ILDEPL 188 (245)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~ll-------llDEPt 188 (245)
+ .. .. ...+.++++. + +++.. . ...|||||+||++||||++.+|++. +-|.|.
T Consensus 77 ----~------~~--~~--~a~l~~~i~~~l~g~dt~-i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 ----V------SE--EE--GNDLDWIYERYLSDYDLV-I---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp ----C------CH--HH--HTCHHHHHHHHTTTCSEE-E---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred ----C------Ch--hh--hhCHHHHHHhhCCCCCEE-E---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 0 00 00 1123444444 3 44432 2 2249999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHh
Q 035832 189 AG---LDWKARADVVKLLKHL 206 (245)
Q Consensus 189 s~---LD~~~~~~i~~~l~~l 206 (245)
.+ +|....+.+.+++.+.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHH
T ss_pred ccCcccCcccHHHHHHHHHHH
Confidence 22 3344556777777554
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.55 E-value=3.8e-17 Score=142.18 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=85.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
.++.+++|+||+|||||||.+.|++++.+. | .. ++.+.+|+|+.. +.+.+..+|+.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~-------------~~~~~iv~~D~f--~~~~~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG-------------EKSIGYASIDDF--YLTHEDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG-------------GSCEEEEEGGGG--BCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC-------------CceEEEeccccc--cCChHHHHHHhcc
Confidence 568899999999999999999999998763 2 00 133566699973 3456888898765
Q ss_pred CCC---C--CCchhHHHHHHHHHHHHHHHcCCC-------CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 123 WPR---Q--SGSIQLKEYLALNLQRAINWVGLD-------GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 123 ~~~---~--~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
.+. . .+.. .......+.+.++.+.-. ......+...+||||+||+.+|++...+|+|+|+||||++
T Consensus 87 ~~~~~l~~~~g~p--~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ 164 (290)
T 1odf_A 87 FKNNKLLQGRGLP--GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLG 164 (290)
T ss_dssp TTTCGGGSSSCST--TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTT
T ss_pred ccccchhhhccCc--chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCcccc
Confidence 211 0 0000 000112344455554322 1113455678999999999998433339999999999999
Q ss_pred CCHH
Q 035832 191 LDWK 194 (245)
Q Consensus 191 LD~~ 194 (245)
+|+.
T Consensus 165 ld~~ 168 (290)
T 1odf_A 165 FNPI 168 (290)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9985
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.54 E-value=3.8e-14 Score=128.33 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=86.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHH--HHhCCCCCCcc-----eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQ--LLAGLSKPTSG-----SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~--~l~Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-|++|++++|+||||||||||++ +++++.+++.| .+++++++..... ....+++++|+ ...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~---rl~~~a~~~gl---------~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV---RLVSIAQRFGL---------DPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH---HHHHHHHHTTC---------CHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH---HHHHHHHHcCC---------ChH
Confidence 57899999999999999999999 55688777554 6666654310000 00000011111 111
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH--HHHHHHHHH--hhCCCEEEEeCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK--RRLALAIQL--VQVPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk--qrv~iAral--~~~p~llllDEPts 189 (245)
++.+|+.+.. ...++. +.+.-++.+ ..+|+++++|||++
T Consensus 242 ~vleni~~~~-------------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 DALNNVAYAR-------------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHTEEEEE-------------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hHhhcEEEec-------------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2333332210 111222 222222222 25799999999999
Q ss_pred CCCHHHH------------HHHHHHHHHhhc--CceEEEEecCh-------------------hHHHhhccEEEEEeCC
Q 035832 190 GLDWKAR------------ADVVKLLKHLKK--ELTILVVSHDL-------------------KEMAALVDHSWRMDMG 235 (245)
Q Consensus 190 ~LD~~~~------------~~i~~~l~~l~~--~~tiii~tHd~-------------------~~~~~~~d~v~~l~~G 235 (245)
.+|+... .++++.|+++.+ +.|||+++|.. ..+...+|.+++|+.+
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9997532 567777887753 68999999982 2346789999999875
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.51 E-value=7.4e-19 Score=151.72 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=103.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..++++++|++++| ++|+||||||||||+++|+|...+ |.|.++|.++...... ...+.++++||......+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~----~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVG----ESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTH----HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhh----HHHHHHHHHHHHHHhcCC
Confidence 35789999999999 999999999999999999999877 7999998776432110 112468889987522345
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-- 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-- 189 (245)
..++.|++....... . .. ... ..... .++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 105 ~i~~~Deid~~~~~r--~---~~----~~~------~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~ 166 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR--S---DR----ETG------ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRP 166 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred CeEeeehhhhhhccc--C---CC----cch------HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence 566777776532110 0 00 000 12222 35667789999999999999999999975 99864
Q ss_pred ----------CCCHHHHHHHHHHHH
Q 035832 190 ----------GLDWKARADVVKLLK 204 (245)
Q Consensus 190 ----------~LD~~~~~~i~~~l~ 204 (245)
--|...+.++++.+.
T Consensus 167 gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 167 GRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 347777877777654
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.50 E-value=1.8e-17 Score=145.17 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=94.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEE-------------------cCCCEEEEECCCCCcHHHHHHHHhCCCC--CCcce
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSL-------------------PEKSFGLIFGRSGSGKTTLLQLLAGLSK--PTSGS 75 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i-------------------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~ 75 (245)
+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 589999999992 5899999988 8999999999999999999999999988 99999
Q ss_pred EEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc
Q 035832 76 INI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 76 i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (245)
|.+ +|..... ..++.+|++ |.+. .+..+++.+++.+.... .+-...
T Consensus 113 i~vi~~d~~~~~~--------~~~~~~~~v-q~~~-~~~~~~~~~~~~~~~~l---------------------~~~~~~ 161 (308)
T 1sq5_A 113 VELITTDGFLHPN--------QVLKERGLM-KKKG-FPESYDMHRLVKFVSDL---------------------KSGVPN 161 (308)
T ss_dssp EEEEEGGGGBCCH--------HHHHHHTCT-TCTT-SGGGBCHHHHHHHHHHH---------------------TTTCSC
T ss_pred EEEEecCCccCcH--------HHHHhCCEe-ecCC-CCCCccHHHHHHHHHHH---------------------hCCCCc
Confidence 999 8765311 012457787 7653 44566787777653100 000000
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
...+....+.+ +|+..+.+.+.+|+++|+|.|....+
T Consensus 162 -i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 162 -VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp -EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred -eeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 11122222222 33332334456789999999998876
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.50 E-value=4e-19 Score=146.14 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=41.1
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 171 LAI-QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 171 iAr-al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
.|+ +++.+|++++|||||+++|..+.+.+.+.|....++ +.++|.. ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~~~----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSKEP----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGGST----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhhcc----CCceEEEECC
Confidence 456 788889999999999999999999998888776533 1234511 4567777665
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=2.4e-18 Score=152.31 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=115.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCccCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEK-------SFGLIFGRSGSGKTTLLQLLAGLS----KPTSGSINIRGYNNDG 85 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~ 85 (245)
+++.++++..|++ ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++..
T Consensus 18 ~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 18 FLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred HcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 3566777777754 45899999999877 899999999999999999999998 6778877766654421
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
... ...+..|.|++|... +.. ++.+++.......... ..........+...+..+++.. ...++..||+|
T Consensus 96 ~~~----~~~~~~v~~iDE~~~--l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILT----SLERGDVLFIDEIHR--LNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSP 166 (334)
T ss_dssp HHH----HCCTTCEEEEETGGG--CCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHH
T ss_pred HHH----HccCCCEEEEcchhh--cCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHH
Confidence 100 012356999998753 333 6777764321110000 0000111223444455566643 46678899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
++||+.++ .+||+.+.+++.++|++..+... ++|+.+.+..++++
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKR 211 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHT
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHh
Confidence 99998655 78888889999999988753211 36777766666553
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.49 E-value=6.5e-17 Score=133.56 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=66.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+ ..+..+++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g----------------------~~~g~v~~d~~-~~-~~~~~~~~~~ 73 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G----------------------LPAEVVPMDGF-HL-DNRLLEPRGL 73 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T----------------------CCEEEEESGGG-BC-CHHHHGGGTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C----------------------CceEEEecCCC-cC-CHHHHHHhcc
Confidence 5789999999999999999999999999864 2 01445554431 11 1122222210
Q ss_pred -cCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 035832 122 -GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA-IQLVQVPDLLILDEPL 188 (245)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA-ral~~~p~llllDEPt 188 (245)
.......... .......+..+-..-.+.-. .......+|+||+||+++| ++++.++.++++|||.
T Consensus 74 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~i~~p-~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 74 LPRKGAPETFD-FEGFQRLCHALKHQERVIYP-LFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGTTSGGGBC-HHHHHHHHHHHHHCSCEEEE-EEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cccCCCCchhh-HHHHHHHHHHHhcCCceecc-cCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0000000000 11111111111111011100 1123345799999999998 8888898888899984
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.47 E-value=3.3e-14 Score=131.19 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=49.6
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 85 (245)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 479999999999 9999999999999999999999999999999999998864
No 149
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.42 E-value=1.1e-15 Score=133.80 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC---cc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV---AD 113 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~---~~ 113 (245)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.++... ...+..+||++|.|....+ .+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-----~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-----ELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-----CEEEETTEEEESSCSCSSCCCTTC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-----HHhhcCCEEEecCCCccccccccC
Confidence 677899999999999999999999999999999999998 777654321 1111127999999863321 46
Q ss_pred cHHHHHHhcCCCC---------CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 114 NVLDEVIFGWPRQ---------SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 114 tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
|+ +++...++.. .... ...+....+.++++.++|.+. ..+....|+.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~-h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCL-HLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCC-SSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCC-CccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhhc
Confidence 78 8884222100 0000 001112357788999999763 234455666777763
No 150
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=2.4e-17 Score=148.81 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=108.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCcceEEEcCccCCCCCCCCCCCCCCCcE---EEEecC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG------------LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV---GIVFQF 105 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i---~~v~Q~ 105 (245)
.+++|..++|+|+||||||||+|+|+| ...|+.|.+.+.|..+...... ...++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~---~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA---YKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH---HCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh---cccccccCcceEEEec
Confidence 457899999999999999999999999 5678999999987432100000 0001223 355565
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEE
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLI 183 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~lll 183 (245)
|. +....+..+++ .. ...... ..++.++..++.. .+..+..+|++. +| ++++
T Consensus 93 pG-l~~~~s~~e~L--------~~-~fl~~i-r~~d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 93 AG-LTKGASTGVGL--------GN-AFLSHV-RAVDAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp GG-GCCCCCSSSSS--------CH-HHHHHH-TTCSEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHH
T ss_pred cc-cccCCcHHHHH--------HH-HHHHHH-HHHHHHHHHHhcc---ccceeeeecccc------------Ccchhhhh
Confidence 53 22222221111 00 000000 0011112222222 144555577763 89 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHh-hc-CceEEEEecChhHHHhhccEEE-EEeCC-eEEEe
Q 035832 184 LDEPLAGLDWKARADVVKLLKHL-KK-ELTILVVSHDLKEMAALVDHSW-RMDMG-GFLVE 240 (245)
Q Consensus 184 lDEPts~LD~~~~~~i~~~l~~l-~~-~~tiii~tHd~~~~~~~~d~v~-~l~~G-~i~~~ 240 (245)
+|||+.++|+...+..++.+... .+ +.|++ +|++..+..+|+++. +|++| +++..
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 99999999999999999999988 54 46653 999999999999999 89999 77643
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.39 E-value=1.6e-12 Score=113.18 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=98.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~------------ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR------------ 138 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC------------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc------------
Confidence 4566777888532 2 788888 999999999999999999999999999888888886544310
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+ ... +. ...+.+..++.-..... ..+..+.+|.+|+++...
T Consensus 139 --------~------~~~-~q---------------------l~~~~~~~~l~~~~~~~---~~~p~~l~~~~l~~~~~~ 179 (295)
T 1ls1_A 139 --------P------AAR-EQ---------------------LRLLGEKVGVPVLEVMD---GESPESIRRRVEEKARLE 179 (295)
T ss_dssp --------H------HHH-HH---------------------HHHHHHHHTCCEEECCT---TCCHHHHHHHHHHHHHHH
T ss_pred --------H------hHH-HH---------------------HHHhcccCCeEEEEcCC---CCCHHHHHHHHHHHHHhC
Confidence 0 000 00 00112233554221011 233445678999999889
Q ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHHHhhcCceEEEEe
Q 035832 178 VPDLLILDEP-LAGLDWKARADVVKLLKHLKKELTILVVS 216 (245)
Q Consensus 178 ~p~llllDEP-ts~LD~~~~~~i~~~l~~l~~~~tiii~t 216 (245)
+++++|+||| +.++|.....++.++...+....+++++.
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999999 99999998888888877765444555444
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.39 E-value=5.9e-13 Score=115.95 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=90.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
.+|++++++|||||||||+++.|++.+.+++| +++.++.+++. ..++.+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G----------------------~~V~lv~~D~~----r~~a~eqL~-- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH----------------------KKIAFITTDTY----RIAAVEQLK-- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------------------CCEEEEECCCS----STTHHHHHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------------CEEEEEecCcc----cchHHHHHH--
Confidence 47999999999999999999999999987666 13566666652 122222222
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 035832 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202 (245)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 202 (245)
.+.+..|+.-. .. .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++
T Consensus 155 -------------------~~~~~~gl~~~-~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 155 -------------------TYAELLQAPLE-VC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp -------------------HHHTTTTCCCC-BC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred -------------------HHHHhcCCCeE-ec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHH
Confidence 12222344321 11 12 2334556664 4999999999 999998776655555
Q ss_pred HHHhh---cC-ceEEE-EecChhHHHhhccEEEEEeCCeEEE
Q 035832 203 LKHLK---KE-LTILV-VSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 203 l~~l~---~~-~tiii-~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+-+. .. ..+++ +||+.+.+..+++++..+..++++.
T Consensus 205 ~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 205 KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 44433 12 23444 4999888888888876666677665
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.39 E-value=9.2e-14 Score=121.61 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=74.3
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
.++|+.++|++++|+|||||||||+++.|++.+++..|+|.+.+.|.. + . ...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~-----------r---------------~-~a~ 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-----------R---------------A-AAI 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-----------C---------------H-HHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc-----------c---------------H-HHH
Confidence 456677899999999999999999999999999988888877554320 0 0 000
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCC
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL---ALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~iAral~~~p~llllDEPts 189 (245)
+.+..+.+.++++- ...+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 ---------------------eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ---------------------EQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------------------HHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------------------HHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11223445556642 225689999999 99999999999999999974
No 154
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.34 E-value=1.4e-14 Score=121.57 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=51.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC----CCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN----SPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~----~~~ 92 (245)
.|+++|++..|+ . +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 588888865542 1 566666 89999999999999999999999999999999999887432211 011
Q ss_pred CCCCCcEEEEecC
Q 035832 93 PLPPEKVGIVFQF 105 (245)
Q Consensus 93 ~~~~~~i~~v~Q~ 105 (245)
...+..++|+||.
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 1124679999975
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.32 E-value=1.2e-13 Score=112.67 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=52.7
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+...... ..+..++|+||++. .|..+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRP----GDQEGVDYFFIDET-RFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCT----TCCBTTTBEECCHH-HHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCch----hHhcCceEEeccHH-HHHHHHhcCc
Confidence 67889999999999999999999999999974 578877665443211 12457899999974 5556666666
Q ss_pred HHh
Q 035832 119 VIF 121 (245)
Q Consensus 119 l~~ 121 (245)
+..
T Consensus 72 ~~~ 74 (205)
T 3tr0_A 72 FLE 74 (205)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.28 E-value=5.3e-16 Score=133.48 Aligned_cols=158 Identities=21% Similarity=0.247 Sum_probs=100.2
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++++.+.|.. ..++++++|++++| ++|+||||||||||+++|++... .|.|.+++.++...... ...+.
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~----~~~~~ 120 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAAR 120 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTT----HHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhh----HHHHH
Confidence 34455555532 35789999999999 88999999999999999999885 78999988765322110 11245
Q ss_pred EEEEecCCCCCCCcccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 99 VGIVFQFPERYFVADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
++++||......+..++.|++. ++.................+.++ ..+|||||+||+.+++|+..
T Consensus 121 i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l--------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL--------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH--------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH--------------HHHHhCCCCCCCEEEEEecC
Confidence 7788887533345567777773 43211100000001111122222 23589999999999999999
Q ss_pred CCCEEEEeCCCC------------CCCHHHHHHHHHH
Q 035832 178 VPDLLILDEPLA------------GLDWKARADVVKL 202 (245)
Q Consensus 178 ~p~llllDEPts------------~LD~~~~~~i~~~ 202 (245)
+|++ +|++.. -.|...+.++++.
T Consensus 187 ~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 221 (278)
T 1iy2_A 187 RPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRI 221 (278)
T ss_dssp CTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred Cchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 9987 676532 2356666666553
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.28 E-value=8.2e-14 Score=129.42 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=106.3
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC--
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV-- 111 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~-- 111 (245)
+.+++++.++..++|.|++||||||++++|.. +.+++.|++.+.+.|........ + .. -|. .+.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~--~~------lPh-l~~~V 225 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---Y--EG------IPH-LLTEV 225 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---G--TT------CTT-BSSSC
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---h--cc------CCc-cccee
Confidence 35788999999999999999999999999876 66777788888776643211000 0 00 010 100
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC-C-CCCCCCChHHHHHH----------HHHHHHhhCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL-D-KDPHSLSGGYKRRL----------ALAIQLVQVP 179 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~LSgGqkqrv----------~iAral~~~p 179 (245)
-....+-... ......+++++. ++++.+|+.+... + +....+|+||+|+. .+|+++...|
T Consensus 226 vtd~~~a~~~-------L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP 297 (512)
T 2ius_A 226 VTDMKDAANA-------LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEP 297 (512)
T ss_dssp BCSHHHHHHH-------HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred ecCHHHHHHH-------HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCC
Confidence 0111110000 001123344443 6778888765310 1 12245788887752 3566777889
Q ss_pred C-EEEEeCCCCCCCHHHHHHHHHHHHHhh----c-CceEEEEecChh-------HHHhhccEEEE
Q 035832 180 D-LLILDEPLAGLDWKARADVVKLLKHLK----K-ELTILVVSHDLK-------EMAALVDHSWR 231 (245)
Q Consensus 180 ~-llllDEPts~LD~~~~~~i~~~l~~l~----~-~~tiii~tHd~~-------~~~~~~d~v~~ 231 (245)
. ++++||+++-+|.. ...+.+.|.++. . +.++|++||++. ....+..|+.+
T Consensus 298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8 89999999988843 345555555542 2 579999999987 34566677665
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.27 E-value=4.2e-16 Score=132.10 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=102.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.++...... ...+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~----~~~~ 95 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAA 95 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTT----HHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhh----HHHH
Confidence 455666666643 35799999999999 88999999999999999999885 78999988765322110 1124
Q ss_pred cEEEEecCCCCCCCcccHHHHH-HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++++||......+..++.|++ .++.................+.+++ ..|||||+||+.+++|+.
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll--------------~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL--------------VEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH--------------HHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH--------------HHHhCCCCCCCEEEEEcc
Confidence 5778888753334556777777 3432111000000011111222222 357899999999999999
Q ss_pred hCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q 035832 177 QVPDLLILDEPLA------------GLDWKARADVVKLL 203 (245)
Q Consensus 177 ~~p~llllDEPts------------~LD~~~~~~i~~~l 203 (245)
.+|++ +|++.. -.|...+.++++..
T Consensus 162 ~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 162 NRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 99987 677654 23666666666543
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.24 E-value=2.1e-13 Score=129.57 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=105.7
Q ss_pred eEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCCCCCCcEE
Q 035832 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEPLPPEKVG 100 (245)
Q Consensus 22 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~i~ 100 (245)
+++..|+. ..+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++..... ....++
T Consensus 39 ~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~---------~~p~i~ 107 (604)
T 3k1j_A 39 LIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE---------NMPRIK 107 (604)
T ss_dssp HHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT---------TSCEEE
T ss_pred ccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc---------cCCcEE
Confidence 33334542 468999999999999999999999999999999999999887 788887654421 134588
Q ss_pred EEecCCCC---------------------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC
Q 035832 101 IVFQFPER---------------------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH 159 (245)
Q Consensus 101 ~v~Q~~~~---------------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (245)
++|+.... .+...++.+|+.............. . ......+.+|.-+. ......
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~---~~~~~~~L~G~~~~-~~~~~g 182 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-A---TGAHAGALLGDVRH-DPFQSG 182 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-C---TTCCHHHHHCEECC-CCC---
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-c---CCCCHHhcCceEEe-chhhcC
Confidence 88765310 1111222222222100000000000 0 00011122332221 123346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.+|+|++|++..++....++.+|++||... |++..+..+++.|.+-
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 799999999999999999999999999988 8999999999999853
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.24 E-value=7.5e-11 Score=98.37 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHh-hc-CceEEEEecChhH--------HHhhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGL--DWKARADVVKLLKHL-KK-ELTILVVSHDLKE--------MAALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~L--D~~~~~~i~~~l~~l-~~-~~tiii~tHd~~~--------~~~~~d~v~~l~~ 234 (245)
.+|+++++|+|++.+ |+....+++..|.++ ++ ++|||+++|.... +..+||.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 689999999999988 664455555555554 33 5899999998765 4678999999964
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.21 E-value=4e-12 Score=116.76 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=108.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCc-EEEEecCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEK-VGIVFQFPERY 109 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~-i~~v~Q~~~~~ 109 (245)
.+.|+++..-+.+|+++.|.|++|+|||||+..+++...+..| .|.+.+..... . ....+ ++....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~---~----~l~~r~~~~~~~----- 257 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA---Q----QLVMRMLCAEGN----- 257 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH---H----HHHHHHHHHHHT-----
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH---H----HHHHHHHHHHcC-----
Confidence 3568888888999999999999999999999999987655434 44443221100 0 00000 000000
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCC
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV--QVPDLLILDEP 187 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~--~~p~llllDEP 187 (245)
+ . .+.+..+ ... .....++.++++.++..+...+ ....+|.++.+ +.|+.++ .+|+++++|++
T Consensus 258 ~---~-~~~l~~g------~l~--~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l 322 (454)
T 2r6a_A 258 I---N-AQNLRTG------KLT--PEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYL 322 (454)
T ss_dssp C---C-HHHHHTS------CCC--HHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECG
T ss_pred C---C-HHHHhcC------CCC--HHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccH
Confidence 0 0 0111111 000 1111234445555544333223 35689999887 5666665 78999999999
Q ss_pred CCCCC--------HHHHHHHHHHHHHhhc--CceEEEEec---------C--hh--------HHHhhccEEEEEeCCeE
Q 035832 188 LAGLD--------WKARADVVKLLKHLKK--ELTILVVSH---------D--LK--------EMAALVDHSWRMDMGGF 237 (245)
Q Consensus 188 ts~LD--------~~~~~~i~~~l~~l~~--~~tiii~tH---------d--~~--------~~~~~~d~v~~l~~G~i 237 (245)
+.-.+ .....++.+.|+.+++ +++||+++| + +. .+...||.|++|..++.
T Consensus 323 ~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 323 QLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 98774 2344566677777753 689999999 3 22 46778999999986543
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.20 E-value=5.3e-13 Score=108.14 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
.+.+|++++.+|+++++| ||++|..+.+++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999998865
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.18 E-value=1.4e-11 Score=109.65 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHh----hc-CceEEEEecChh------
Q 035832 167 RRLALAIQLVQV--PDLLILDEPLAGL----------DW---KARADVVKLLKHL----KK-ELTILVVSHDLK------ 220 (245)
Q Consensus 167 qrv~iAral~~~--p~llllDEPts~L----------D~---~~~~~i~~~l~~l----~~-~~tiii~tHd~~------ 220 (245)
|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ ++ ++|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888755 9999999999998 33 1222444555544 33 689999999643
Q ss_pred ----------HHHhhccEEEEEeCCeEEE
Q 035832 221 ----------EMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 221 ----------~~~~~~d~v~~l~~G~i~~ 239 (245)
.+..+||.++.++.++.+.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeee
Confidence 2567899999998765543
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.16 E-value=8.3e-12 Score=104.21 Aligned_cols=184 Identities=17% Similarity=0.074 Sum_probs=75.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+..+++||++++|++++|+||||||||||+++|+ |++++ + ..+.+........ .....++|.|+++. .|.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~---g~~~g~~~~~~~~~-~~~ 85 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARK---GEKEGKDYYFVDRE-EFL 85 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCT---TCCBTTTBEECCHH-HHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCc---cccCCCeEEEecHH-Hhh
Confidence 4579999999999999999999999999999999 99865 2 3333322211110 01123557777653 333
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH-HHH-HHHhhCCCEEEEeCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL-ALA-IQLVQVPDLLILDEPLA 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv-~iA-ral~~~p~llllDEPts 189 (245)
.++..+++.............. ...+.++++.-.. ...+-.+. -...-++++ .-+ ..++..|+..+++|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~ 159 (231)
T 3lnc_A 86 RLCSNGEIIEHAEVFGNFYGVP---RKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLC 159 (231)
T ss_dssp HHHHTTCEEEEEEETTEEEEEE---CTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC--
T ss_pred hhhhcCceehhhhhccccCCCC---HHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHH
Confidence 3333333331100000000000 0012222322111 01111000 011113332 111 23456777888899999
Q ss_pred CCCHHHHHHHHHHHHHhh----c--CceEEEEecChhHHHhhccEEEE
Q 035832 190 GLDWKARADVVKLLKHLK----K--ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~----~--~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
+.|..+.+.+.+.|.... . ...+++++|+++.+...+++++.
T Consensus 160 ~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~ 207 (231)
T 3lnc_A 160 GRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILR 207 (231)
T ss_dssp ------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHH
Confidence 999888888777665532 1 25788899999887766665543
No 165
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.11 E-value=6.4e-11 Score=94.86 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=80.7
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc--cCCCCCCCCCCCCCCCcEEEEecCCCCCCCc-
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY--NNDGEPNNSPEPLPPEKVGIVFQFPERYFVA- 112 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~- 112 (245)
++++|++.+| +++|+||||||||||+++|++++.+..|.....+. ++-..............|.++||++...++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999999887765432221 1100000000001245799999997533321
Q ss_pred ---ccHHHHHHh-cCCC-CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 113 ---DNVLDEVIF-GWPR-QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 113 ---~tv~e~l~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEP 187 (245)
.++...+.- +... ...... .....+.++++.+++... + +.-++.||.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~---~~~~~~~~~l~~~~l~~~--~--~~~~~qg~~~~l~----------------- 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRR---ATRSEILDILTAAMISPD--G--YNIVLQGDITKFI----------------- 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEE---ECHHHHHHHHHHTTCCTT--C--TTEECTTCTTHHH-----------------
T ss_pred CcEEEEEEEEEeCCcEEEEECCeE---cCHHHHHHHHHHcCCCCC--C--CEEEEcccHHHHH-----------------
Confidence 222211100 0000 000000 012356778888898642 1 2356777777764
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 035832 188 LAGLDWKARADVVKLLKH 205 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~ 205 (245)
-++|..++++++.+..
T Consensus 153 --~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 153 --KMSPLERRLLIDDISG 168 (182)
T ss_dssp --HSCHHHHHHHHHHHHT
T ss_pred --hCCHHHHHHHHHHHHC
Confidence 2456666666665543
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=5.4e-11 Score=106.40 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 44 EKSF-GLIFGRSGSGKTTLLQLLAGLSK-----------PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 44 ~Ge~-~~liG~nGsGKSTLl~~l~Gl~~-----------p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.|-. ++|+|++|||||||++.|+|... |+.|.+.++|.++. .....|++.+.|.....
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~----------l~DT~G~i~~lp~~lve 246 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM----------LVDTVGFIRGIPPQIVD 246 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE----------EEECCCBCSSCCGGGHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE----------EEeCCCchhcCCHHHHH
Confidence 3444 99999999999999999999876 56788888775431 11234555554421111
Q ss_pred c-ccHHHHHHhc-----CCCCCCchhHHHHHHHHHHHHHHHcCCCCcc---CCCCCCCCChHHHHHHHHH----HHH-hh
Q 035832 112 A-DNVLDEVIFG-----WPRQSGSIQLKEYLALNLQRAINWVGLDGTS---LDKDPHSLSGGYKRRLALA----IQL-VQ 177 (245)
Q Consensus 112 ~-~tv~e~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~iA----ral-~~ 177 (245)
. .+..+.+... .................+.++++.+++.+.. ...++..+|++++|++.++ +++ ..
T Consensus 247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 0 1122222111 0000111000112223355677777765421 1345777898999988887 555 43
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
+|++ +|+|++|..+.+.+++.|.++.
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 4454 8999999999999999998753
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.03 E-value=1.3e-11 Score=104.96 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=35.7
Q ss_pred cceEEEEeE-EEECCCCccceeeeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 15 YSCLEVRDV-SYRPPGTQVDILNGVSFSLPE---KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 15 ~~~l~~~~l-~~~y~~~~~~il~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+++|+ +++|++ ..++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 999932 35799999999999 9999999999999999999999854
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.01 E-value=2.5e-13 Score=122.03 Aligned_cols=138 Identities=21% Similarity=0.132 Sum_probs=82.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+..-. .. .. .....+|++||.+..++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~----~~~~~lg~~~q~~~~l~-- 222 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LD----RLNFELGVAIDQFLVVF-- 222 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TT----THHHHHGGGTTCSCEEE--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---ch----hHHHHHHHhcchhHHHH--
Confidence 578999999999999999999999999999999985 467775511 10 00 00113666777652111
Q ss_pred ccHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHH---HcC------------CCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 113 DNVLDEVIFGWP--RQSGSIQLKEYLALNLQRAIN---WVG------------LDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 113 ~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~---~~~------------l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++..... +........ .....+.+.++ .+. +....++.....+++|++||+..+.++
T Consensus 223 ----dd~~~~~~~~r~l~~~~~~-~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l 297 (377)
T 1svm_A 223 ----EDVKGTGGESRDLPSGQGI-NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDF 297 (377)
T ss_dssp ----TTCCCSTTTTTTCCCCSHH-HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEEC
T ss_pred ----HHHHHHHHHHhhccccCcc-hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhcc
Confidence 11111100 000000000 00112223332 000 111123556778999999999998888
Q ss_pred hhCCCEEE-EeCCCC
Q 035832 176 VQVPDLLI-LDEPLA 189 (245)
Q Consensus 176 ~~~p~lll-lDEPts 189 (245)
+..|++++ ||+|+.
T Consensus 298 ~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 298 RPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCHHHHHHHHTCTH
T ss_pred CCCCCeEEEEeCCHH
Confidence 88998888 888875
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.97 E-value=4.1e-11 Score=97.29 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
...|++++.+|.++++| ||++|..+.+++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999 9999999999999988764
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.94 E-value=5e-12 Score=117.37 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=86.4
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...... ...+++..+||......+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g----~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTT----HHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhh----hHHHHHHHHHHHHHhcCCC
Confidence 4688999999999 89999999999999999999875 78999998776432110 1123567788876433445
Q ss_pred ccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 113 DNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 113 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
..+.|++. ++............+....+.+++. .||||++|+..+++|...+|++ |||+..
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~--------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV--------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH--------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH--------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 56667773 3321111000001111223333332 3677888888888888888877 788765
No 171
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.93 E-value=2.8e-10 Score=92.52 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=30.1
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
+++.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 172
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.91 E-value=1.2e-09 Score=106.37 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcC-ceEEE-EecChhHHHhhccE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARADVVKLLKHLKKE-LTILV-VSHDLKEMAALVDH 228 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~-~tiii-~tHd~~~~~~~~d~ 228 (245)
+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.....+ .+|++ +||+.+.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34566789999999999999999999999999996 99988777777666655444 57777 49999888887764
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.88 E-value=4.5e-10 Score=90.66 Aligned_cols=33 Identities=33% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 77 (245)
|++++|+||||||||||+++|+|++++..|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 678999999999999999999999976555443
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.87 E-value=6.1e-09 Score=92.57 Aligned_cols=125 Identities=22% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~ 123 (245)
..-.++++|++|+|||||++.++|... . ..+.+... ....++.+.+... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t---------~~~~~~~~~~~~~-~-------------- 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT---------RGINVGQFEDGYF-R-------------- 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS---------SCEEEEEEEETTE-E--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee---------eceeEEEEEecCc-e--------------
Confidence 445799999999999999999998752 1 11111100 0122444443310 0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHH
Q 035832 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD-EPLAGLDWKARADVVKL 202 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD-EPts~LD~~~~~~i~~~ 202 (245)
+..++.... .+.++..+|+|++|++. +.+...++-++++| +|.+++|......+++.
T Consensus 216 --------------------~~l~Dt~G~-~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~ 273 (357)
T 2e87_A 216 --------------------YQIIDTPGL-LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273 (357)
T ss_dssp --------------------EEEEECTTT-SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHH
T ss_pred --------------------EEEEeCCCc-cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHH
Confidence 000111222 24466789999998876 66666777889999 99999999998888887
Q ss_pred HHHhhcCceEEEEe--cChh
Q 035832 203 LKHLKKELTILVVS--HDLK 220 (245)
Q Consensus 203 l~~l~~~~tiii~t--Hd~~ 220 (245)
+.....+..+|++. ||+.
T Consensus 274 i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 274 VHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHTTTSCEEEEECCTTTC
T ss_pred HHHhcCCCCEEEEEECcccC
Confidence 77754467777877 8874
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.86 E-value=6.5e-10 Score=98.97 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-NIRG 80 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g 80 (245)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999999999999998877766765 4443
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.86 E-value=6.8e-11 Score=96.52 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=46.4
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE--EEcCccC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI--NIRGYNN 83 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~ 83 (245)
+|++..++. ..+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 466666543 456788899899999999999999999999999999987 67988 8888765
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.84 E-value=4.6e-10 Score=91.67 Aligned_cols=127 Identities=24% Similarity=0.157 Sum_probs=76.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
+++|+|||||||||+.++|+++ |...+++-++. ..+.. +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~--------------------------------~~~~~--~-- 42 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA--------------------------------REVVA--K-- 42 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH--------------------------------HHTTC--S--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH--------------------------------HHHcc--C--
Confidence 6899999999999999999983 54445432210 00000 0
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.. ..+.++.+.+|.... .|.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+...
T Consensus 43 -~~--------~~~~~i~~~~g~~~~--------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~ 103 (206)
T 1jjv_A 43 -DS--------PLLSKIVEHFGAQIL--------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ 103 (206)
T ss_dssp -SC--------HHHHHHHHHHCTTCC--------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred -Ch--------HHHHHHHHHhCHHHh--------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc
Confidence 00 012334445564321 3678889999998888887644333 3456777777766665543
Q ss_pred hcCceEEEEecChhHH--HhhccEEEEEeC
Q 035832 207 KKELTILVVSHDLKEM--AALVDHSWRMDM 234 (245)
Q Consensus 207 ~~~~tiii~tHd~~~~--~~~~d~v~~l~~ 234 (245)
. +.++|+.+|.+.+. ...||.+++++-
T Consensus 104 ~-~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 T-APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp C-SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred C-CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 2 45788889987765 678999999863
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.84 E-value=1.2e-10 Score=98.72 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=48.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceEE--------EcCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSIN--------IRGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~--------~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++..... ....++.++++||.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEA---LVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTT---HHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHH---HHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 88877632110 111245688999764
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.83 E-value=1.6e-08 Score=89.82 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=88.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+.-..... .....+..++.+...+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~----~~~~~~~~~~~~~~~~ 97 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD----GTREYAEFLHLPRKKF 97 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS----CSCCEEEETTSTTCCB
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC----cccceeeeecCCCccc
Confidence 58999999998 899999999999999999999 56777776643322211000000 0122344443332222
Q ss_pred Ccc-cHHHHH-----HhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 035832 111 VAD-NVLDEV-----IFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183 (245)
Q Consensus 111 ~~~-tv~e~l-----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~lll 183 (245)
... .+.+.+ ........ ......-.....-..-+..+++..........+.++.++|+..++++.+.+|+++|
T Consensus 98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii 177 (360)
T 3t34_A 98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII 177 (360)
T ss_dssp SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence 111 111111 11000000 00000000000000001112333221112234577899999999999999999888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEec
Q 035832 184 LDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSH 217 (245)
Q Consensus 184 lDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tH 217 (245)
+.-..+..|... ...+++++.+.. + .+|+++|.
T Consensus 178 lvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 178 LAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred EEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 874444455443 455667777653 4 57888776
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.82 E-value=4.9e-09 Score=96.76 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHhh-----cCceEEEEecChhHH
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEP----------LAGLDWKARADVVKLLKHLK-----KELTILVVSHDLKEM 222 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEP----------ts~LD~~~~~~i~~~l~~l~-----~~~tiii~tHd~~~~ 222 (245)
+++++|..+++|....|.+|++||+ ++|.|+...+.+.+++..+. .+..||.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6778888999999999999999999 44777777777777776663 246899999998653
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.74 E-value=2.9e-09 Score=86.79 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=48.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
+-+-.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.... ...+..+|++||++. .+..++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-----~~~~~~~g~~~~~~~-~~~~~~ 88 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-----NIATMQRGIPLTDED-RWPWLR 88 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-----HHHHHHTTCCCCHHH-HHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-----HHHHHhcCCCCCCcc-cccHHH
Confidence 33334667899999999999999999999999987 89999987753210 001124577888753 334456
Q ss_pred HHHHHHh
Q 035832 115 VLDEVIF 121 (245)
Q Consensus 115 v~e~l~~ 121 (245)
+.+++..
T Consensus 89 ~~~~~~~ 95 (200)
T 4eun_A 89 SLAEWMD 95 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.73 E-value=1e-09 Score=96.45 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=59.6
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC----CCC-CCCCCCcEEEE-ecCCCC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----NSP-EPLPPEKVGIV-FQFPER 108 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~-~~~~~~~i~~v-~Q~~~~ 108 (245)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ... ....+..++++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~- 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN- 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT-
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC-
Confidence 378999999999999999999999999999999999999999998877632110 000 00014568999 66542
Q ss_pred CCCcccHHHHHH
Q 035832 109 YFVADNVLDEVI 120 (245)
Q Consensus 109 ~~~~~tv~e~l~ 120 (245)
..+..++++++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333334455543
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=4.7e-08 Score=86.50 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=37.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc----CceEEEEecChhHHHhh
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK----ELTILVVSHDLKEMAAL 225 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~----~~tiii~tHd~~~~~~~ 225 (245)
..|.+|++||+... |+.....+.+++.++.. +.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 98888888888876653 57899999998654433
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1.1e-08 Score=83.15 Aligned_cols=39 Identities=23% Similarity=0.077 Sum_probs=24.7
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
...+++|+||++.+|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.65 E-value=6.7e-09 Score=83.29 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 78 (245)
+|++++|+||||||||||++.|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6999999999999999999999999874 5666654
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.61 E-value=1.2e-08 Score=85.03 Aligned_cols=42 Identities=26% Similarity=0.131 Sum_probs=36.7
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445689999999999999999999999998 78999988764
No 187
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.58 E-value=7.6e-09 Score=84.44 Aligned_cols=43 Identities=26% Similarity=0.151 Sum_probs=38.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
..++|++++|+|+||||||||++.|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999988889998876654
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.55 E-value=2.7e-07 Score=81.54 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+-|+.+.--+.+|+++.|.|++|+|||||+..++....... ..+.|+.-+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-----------------------~~Vl~fSlE------- 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD-----------------------RGVAVFSLE------- 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-----------------------CEEEEEESS-------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------------------CeEEEEeCC-------
Confidence 35777666799999999999999999999988875432111 123332211
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
++. .....++......+++... . -..||.++++|+..|...+.+++++|.|+|...++
T Consensus 84 ms~------------------~ql~~Rlls~~~~v~~~~l-~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 MSA------------------EQLALRALSDLTSINMHDL-E---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp SCH------------------HHHHHHHHHHHHCCCHHHH-H---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred CCH------------------HHHHHHHHHHhhCCCHHHH-h---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 111 1111122222222232221 1 13699999999999999999999999999865432
Q ss_pred HHHHHHHHHHHHHhh--c-CceEEEEec
Q 035832 193 WKARADVVKLLKHLK--K-ELTILVVSH 217 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~--~-~~tiii~tH 217 (245)
++...+++++ . +..+|+|-|
T Consensus 142 -----~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -----QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -----HHHHHHHHHHHhcCCCCEEEEec
Confidence 4444444443 2 356666653
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.52 E-value=3.4e-08 Score=80.81 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.9
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.52 E-value=8.5e-09 Score=98.90 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=75.5
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
|+++++|..++|+|++|||||||++.|++...+ ..|+| .+|..+..... ..+++.+++.+|... +...++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~----~e~~~giti~~~~~~--~~~~~~~ 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP----EAKLHRTTVRTGVAP--LLFRGHR 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH----HHHHTTSCCSCEEEE--EEETTEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH----HHHhcCCeEEecceE--EeeCCEE
Confidence 467789999999999999999999999976654 67887 55544322110 011234555555432 1111111
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
.|+ +|.+.+ .++ ......+-..+..++++| |+.|+++.+
T Consensus 76 ~nl----------------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt 115 (665)
T 2dy1_A 76 VFL----------------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGT 115 (665)
T ss_dssp EEE----------------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHH
T ss_pred EEE----------------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhH
Confidence 111 111110 010 112222235677788999 999999887
Q ss_pred HHHHHHHHHHhhcCceEEEEecChhHH
Q 035832 196 RADVVKLLKHLKKELTILVVSHDLKEM 222 (245)
Q Consensus 196 ~~~i~~~l~~l~~~~tiii~tHd~~~~ 222 (245)
.+ +++.+.. .+.++|++.|.++..
T Consensus 116 ~~-~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ER-AWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-HHHHHHH--TTCCEEEEEECGGGC
T ss_pred HH-HHHHHHH--ccCCEEEEecCCchh
Confidence 63 3333332 357788889988753
No 191
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.51 E-value=8.7e-09 Score=90.48 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=35.3
Q ss_pred cceeeeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 32 VDILNGVSFSLPEKS------FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge------~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
...|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457888888888877 999999999999999999999987
No 192
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.51 E-value=1.4e-08 Score=88.24 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhhc--C--ceEEEEecChhHHHhhccEE
Q 035832 161 LSGGYKRRLALAIQLV--QVPDLLILDEPLAGLDWKA-RADVVKLLKHLKK--E--LTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 161 LSgGqkqrv~iAral~--~~p~llllDEPts~LD~~~-~~~i~~~l~~l~~--~--~tiii~tHd~~~~~~~~d~v 229 (245)
+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++.+ + ..+.+++|+-+.+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 5566666 78889998 7899876 6778888887764 3 25666777766666655554
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=4.8e-08 Score=80.12 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=30.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEE
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSIN 77 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~ 77 (245)
++|++++|+||||||||||++.|++.+++ ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999987 444443
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.50 E-value=3.2e-08 Score=78.40 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=32.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999875 8888887654
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.49 E-value=1.7e-08 Score=94.67 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=38.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEE-EcCccC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SIN-IRGYNN 83 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~-~~g~~~ 83 (245)
.+++|++++|+|+||||||||+++|+|++.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 785 888664
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.47 E-value=3.5e-07 Score=83.35 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
++.+++++|||||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 58899999999999999999999998776666655
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.31 E-value=9.1e-07 Score=77.22 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=74.4
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.-+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g----------------------~~vl~~slE------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND----------------------DVVNLHSLE------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT----------------------CEEEEEESS-------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC----------------------CeEEEEECC-------
Confidence 457777767999999999999999999999887742100 00 123333211
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
++.. ....++......+++... .+.. ..||.++++|+..|...+.++++++.|+|...
T Consensus 106 ~s~~------------------~l~~R~~~~~~~i~~~~l-~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-- 163 (315)
T 3bh0_A 106 MGKK------------------ENIKRLIVTAGSINAQKI-KAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-- 163 (315)
T ss_dssp SCHH------------------HHHHHHHHHHTTCCHHHH-HSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--
T ss_pred CCHH------------------HHHHHHHHHHcCCCHHHH-hcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--
Confidence 1111 111111111111222111 1110 13888888888888888888888888888643
Q ss_pred HHHHHHHHHHHHHhhc--Cce--EEEEec
Q 035832 193 WKARADVVKLLKHLKK--ELT--ILVVSH 217 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~--~~t--iii~tH 217 (245)
..++...++++.+ +.. +|+|-|
T Consensus 164 ---~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 ---VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred ---HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2345555555532 345 777755
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=4.5e-08 Score=86.48 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=53.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+++.+++.+.|. ...+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~--~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQAL--STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHH--HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhH--HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 355566666663 24578999999999999999999999999999999999888888887766554
No 199
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.28 E-value=2.5e-07 Score=72.92 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.26 E-value=6.8e-06 Score=72.53 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988864
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.26 E-value=4.8e-07 Score=70.49 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=25.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4456666655 899999999999999999873
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=1.8e-07 Score=82.40 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
..+..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.21 E-value=1.5e-07 Score=88.19 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=43.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34678888888 89999999999999999999999999988899887764
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.20 E-value=8.7e-08 Score=78.89 Aligned_cols=60 Identities=23% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEE--------cCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS---KPTSGSINI--------RGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~--------~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
.+.+++|+||+||||||+.++|++.+ .+++|++.. .|.++.... .....++++++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASED---ALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHH---HHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHH---HHHHHHHhCceeeecc
Confidence 35789999999999999999998765 678898877 555432100 0001234678888864
No 205
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.19 E-value=1.9e-07 Score=83.69 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEEEeEEEECCCCccceee--------------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 18 LEVRDVSYRPPGTQVDILN--------------GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~--------------~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.++|+++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 134 i~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 6788999999864 56888 999999999999999999999999999998865
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.18 E-value=2.3e-05 Score=66.98 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHhhc-----CceEEEEecChhH----HH
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDW----------KARADVVKLLKHLKK-----ELTILVVSHDLKE----MA 223 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~-----~~tiii~tHd~~~----~~ 223 (245)
++++.|..++.+...+|.+|++||+.+-++. .....++..+..... ...||.+|++.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 5667777788888889999999999776553 233345555554421 2467778887532 22
Q ss_pred hhccEEEEE
Q 035832 224 ALVDHSWRM 232 (245)
Q Consensus 224 ~~~d~v~~l 232 (245)
+-+++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 345555554
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.17 E-value=2.7e-07 Score=73.42 Aligned_cols=40 Identities=28% Similarity=0.234 Sum_probs=33.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
.+|++++|+|++||||||+.+.|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998765 56 667776654
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.16 E-value=1.1e-05 Score=70.55 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888754
No 209
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.16 E-value=3.7e-07 Score=80.95 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 347899999999999999999999999888899988776653
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.16 E-value=8.2e-07 Score=72.22 Aligned_cols=34 Identities=29% Similarity=0.140 Sum_probs=29.2
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++-=++++|++++|+|++|||||||++.|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445678899999999999999999999999864
No 211
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.15 E-value=7.4e-07 Score=74.33 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.2
Q ss_pred eeeeeeEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 34 ILNGVSFSLP---EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 34 il~~vsl~i~---~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 3778888877 8999999999999999999999999887 666654
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.04 E-value=1e-06 Score=80.06 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=47.7
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+++++.|++. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|.
T Consensus 79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 34566677542 1 678888 8999999999999999999999999999889998876554
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.04 E-value=4.3e-07 Score=74.37 Aligned_cols=44 Identities=23% Similarity=0.106 Sum_probs=38.4
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999887788 888876554
No 214
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.03 E-value=6.5e-06 Score=75.08 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=35.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 177 QVPDLLILDEPLAGLDW-KARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 177 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.+|++|++||+..-.+. ..++.++..+..+.+ ++.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999876654 678889999988764 58899999973
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.01 E-value=3e-06 Score=69.27 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=25.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556666654 99999999999999999885
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.97 E-value=1.4e-06 Score=70.26 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=31.1
Q ss_pred EEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 24 SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 24 ~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
++.|++- ..+++++||..++++ ++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 3456543 468999999988885 67999999999999999987
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.94 E-value=9.3e-07 Score=76.69 Aligned_cols=59 Identities=22% Similarity=0.137 Sum_probs=47.2
Q ss_pred EEeEEEECCCCccceeee-eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNG-VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+++.+.|++. .++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|.
T Consensus 77 ~~~l~~~~~~~----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFGGD----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTTCS----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhccc----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 44556667542 156 888876 999999999999999999999999988888888866553
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.93 E-value=3.9e-05 Score=69.86 Aligned_cols=172 Identities=19% Similarity=0.077 Sum_probs=90.5
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.....| ..+.|+.-+- ..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g----------------------~~vl~~slE~----~~ 241 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG----------------------VGVGIYSLEM----PA 241 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------------------CCEEEEESSS----CH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC----------------------CeEEEEECCC----CH
Confidence 356666656899999999999999999999888764322112 1123322110 01
Q ss_pred ccHHHHHH---hcCCCC-CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeC
Q 035832 113 DNVLDEVI---FGWPRQ-SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV--QVPDLLILDE 186 (245)
Q Consensus 113 ~tv~e~l~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~--~~p~llllDE 186 (245)
..+...+. .+.... ............++.++++.+.-.....+. ...+|..+- .+.++.+. .+|+++++|.
T Consensus 242 ~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 242 AQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 11111111 111100 000000011112233333333222222222 345676654 34555555 5899999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHhhc--CceEEEEecChh-------------------HHHhhccEEEEEe
Q 035832 187 PLAGLDW----------KARADVVKLLKHLKK--ELTILVVSHDLK-------------------EMAALVDHSWRMD 233 (245)
Q Consensus 187 Pts~LD~----------~~~~~i~~~l~~l~~--~~tiii~tHd~~-------------------~~~~~~d~v~~l~ 233 (245)
.+.-... ....++...|+.+++ +++||+++|--. .+...||.|++|.
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 8754432 122355566666653 589999998211 2466799999985
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.92 E-value=6.4e-06 Score=74.99 Aligned_cols=161 Identities=14% Similarity=0.055 Sum_probs=77.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK------------PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
.++|+|+||||||||++.|+|... |.+|.+.++|.++.-... . -.++..++.+|... .+...+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt---~-G~~~~~~~~~~~~e-~~~~~~ 256 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT---A-GLRRKSRVEPRTVE-KYSNYR 256 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC---S-CC-----------C-CSCCHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEEC---C-CCccccccchhhHH-HHHHHH
Confidence 689999999999999999999864 668999999875421110 0 01233444555543 333344
Q ss_pred HHHHHHhc------CCCCCCchhHHHHHHHHHHHHHHHcCCCCc----cCCCCC-CCCChHHHHHHHHHHHHh--hCCCE
Q 035832 115 VLDEVIFG------WPRQSGSIQLKEYLALNLQRAINWVGLDGT----SLDKDP-HSLSGGYKRRLALAIQLV--QVPDL 181 (245)
Q Consensus 115 v~e~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~-~~LSgGqkqrv~iAral~--~~p~l 181 (245)
..+++..+ ....... . . ....+.+.+...+..-. ..|... ..-+.-+- .-.+++.+. ...++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~-~-~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGI-T-R--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCC-C-H--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCC-C-H--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcE
Confidence 45554432 0100011 1 1 11234445555543210 012110 01111111 113444443 34455
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
+ ++|++.-.+..++++.+.+.....+.-+.|+.++.
T Consensus 332 ~----~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 367 (439)
T 1mky_A 332 I----FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINS 367 (439)
T ss_dssp E----ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred E----EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 4 49999999999998888765432222335565544
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.91 E-value=3.8e-06 Score=69.86 Aligned_cols=152 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
.+.+|+.+++.||+||||||++.++........| ....++++++.|. .....++.+++.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~--------------------~~~~~~~l~~~p~-~~la~q~~~~~~ 130 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND--------------------RAAECNIVVTQPR-RISAVSVAERVA 130 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------CGGGCEEEEEESS-HHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------CCCceEEEEeccc-hHHHHHHHHHHH
Confidence 3467999999999999999998876421110000 0134677888774 233445666665
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc--CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHH
Q 035832 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARA 197 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~ 197 (245)
..+........ .. ........ .+..+--.+.|.-.+.. ...+.+.+++++||.-. ++|.....
T Consensus 131 ~~~~~~~~~~~-g~-----------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 131 FERGEEPGKSC-GY-----------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HTTTCCTTSSE-EE-----------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHhccccCceE-EE-----------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 43211100000 00 00000000 00111123456655553 34688999999999976 67776664
Q ss_pred HHHHHHHHhhcC-ceEEE-EecChhHHHhhcc
Q 035832 198 DVVKLLKHLKKE-LTILV-VSHDLKEMAALVD 227 (245)
Q Consensus 198 ~i~~~l~~l~~~-~tiii-~tHd~~~~~~~~d 227 (245)
..++.+.....+ .++++ +|.+.+...++.+
T Consensus 197 ~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 444444433333 34433 4566665555544
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.91 E-value=7e-06 Score=64.63 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|..++|+|++|+|||||++.++|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999998753
No 222
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=9.6e-07 Score=78.60 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=36.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
.+.+.|++..|+. +.++++++|+| +|+|++|+|||||++.|.|...+..+.+..
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~ 70 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG 70 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence 4888888888853 45789999987 899999999999999999887665555433
No 223
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.89 E-value=5.8e-06 Score=66.10 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=26.5
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999865
No 224
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.87 E-value=2.6e-06 Score=68.02 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=33.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcCc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-NIRGY 81 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~ 81 (245)
...+|.+++|+|++||||||+.+.|+..+.+..+.+ .+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345799999999999999999999999887766666 44443
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.86 E-value=8.8e-06 Score=65.03 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3689999998877 567999999999999999987
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.83 E-value=7.8e-06 Score=66.36 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988764
No 227
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.82 E-value=2e-05 Score=70.06 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=32.7
Q ss_pred EEEEeEEEE-CCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 18 l~~~~l~~~-y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
..+..|+.. |. .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nFr-----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK-----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc-----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345566543 32 257788888775 89999999999999999986
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.78 E-value=0.00026 Score=62.79 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+++.|.||+|+|||||...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999877653
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=71.92 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCcceEEEcCc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL-----------SKPTSGSINIRGY 81 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 81 (245)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6677888877653
No 230
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.77 E-value=8.6e-06 Score=65.78 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.75 E-value=2.7e-05 Score=60.52 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=8.1e-07 Score=77.96 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=40.3
Q ss_pred cceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 32 VDILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 4588999999999999 9999999999999999999988766654433
No 233
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.72 E-value=1.7e-05 Score=62.60 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.71 E-value=8.4e-06 Score=65.89 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999998765 45556543
No 235
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.70 E-value=2.1e-05 Score=63.82 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
.+|.++++||.-. +|+.....+.+.+.+......+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999755 788888888777765444567888888765
No 236
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.67 E-value=2.2e-05 Score=62.16 Aligned_cols=26 Identities=50% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPT 72 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 72 (245)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 37899999999999999999975443
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.66 E-value=5.2e-06 Score=73.61 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred ceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 035832 33 DILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
No 238
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.61 E-value=1.2e-05 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC---CCCCCcceEE
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG---LSKPTSGSIN 77 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G---l~~p~~G~i~ 77 (245)
.+|.+++|+|++||||||+.+.|++ +..++.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 5789999999999999999999985 4445556554
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.60 E-value=1.3e-05 Score=67.52 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=35.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+++.+ ...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33333 567789999999999999999999998764 35677776544
No 240
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.59 E-value=1.9e-05 Score=63.13 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCcc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYN 82 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~ 82 (245)
-.+++|+|++|||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 4677765543
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.59 E-value=2.8e-05 Score=61.62 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999983
No 242
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.53 E-value=2.9e-05 Score=69.42 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhc-CceEEEEecChhHHH------------hhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGLD---WKARADVVKLLKHLKK-ELTILVVSHDLKEMA------------ALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~------------~~~d~v~~l~~ 234 (245)
..|.++++||-=.-++ +.....+.+++++.++ +..++++||++..+. ..|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3588999999988884 6777888888888865 689999999987653 34566666653
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.52 E-value=1.7e-05 Score=66.33 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSI 76 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i 76 (245)
..-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999999 6655666665
No 244
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=3.3e-05 Score=64.73 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=31.1
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.++++++.+++| +.|.||+|+|||||+++|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 355666666666 8899999999999999999876422 466665544
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.48 E-value=6.6e-05 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.46 E-value=5.8e-05 Score=58.72 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 247
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.45 E-value=7.7e-05 Score=61.79 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 75 (245)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 37899999999999999999987765553
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.42 E-value=4.8e-05 Score=74.39 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=29.1
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
|.+++|+.++|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998754
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.38 E-value=9.5e-05 Score=58.49 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997643
No 250
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.37 E-value=0.0028 Score=57.65 Aligned_cols=27 Identities=37% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987664
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.35 E-value=8.9e-05 Score=58.86 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999753
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00011 Score=56.94 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 035832 47 FGLIFGRSGSGKTTLLQLL 65 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l 65 (245)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 253
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.33 E-value=7.1e-05 Score=59.12 Aligned_cols=24 Identities=42% Similarity=0.307 Sum_probs=22.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.++.++.|+|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999999998
No 254
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.32 E-value=0.00012 Score=59.69 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
.+-+++|.|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999973 4455543
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.27 E-value=0.00013 Score=58.94 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987544
No 256
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.27 E-value=0.00016 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=24.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 257
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.26 E-value=2.8e-05 Score=62.98 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 76 (245)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.26 E-value=0.00014 Score=58.08 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999744
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.26 E-value=0.00013 Score=61.42 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
No 260
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00013 Score=57.45 Aligned_cols=23 Identities=39% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00017 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999754
No 262
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.24 E-value=0.00012 Score=58.53 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
..+++|+|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999975 6556654
No 263
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.22 E-value=0.0003 Score=55.69 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHH-hCC----CCCCcc----eEEEcC
Q 035832 47 FGLIFGRSGSGKTTLLQLL-AGL----SKPTSG----SINIRG 80 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l-~Gl----~~p~~G----~i~~~g 80 (245)
.++|+|++|+|||||++.+ .+. ..|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 3789999999999999655 444 456655 444544
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.21 E-value=0.00018 Score=56.30 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G 67 (245)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 265
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.00011 Score=63.29 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=31.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
+.+.++..+.|.||+|+|||||+++|++... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4567899999999999999999999998763 34555543
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.17 E-value=0.00021 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999853
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.17 E-value=0.00018 Score=61.83 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=28.9
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
-..+.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986442 35566654
No 268
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.17 E-value=0.00021 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 269
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.17 E-value=0.00021 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 270
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.16 E-value=0.00028 Score=62.76 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC-----------CCCCCcceEEEcC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG-----------LSKPTSGSINIRG 80 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g 80 (245)
|-.++|+|.+|+|||||++.|+| -..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3356678777765
No 271
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00022 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.14 E-value=0.011 Score=54.32 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=26.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
|+.+---+.+|+++.|.|++|+|||||+.-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433588999999999999999999866653
No 273
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.13 E-value=0.0002 Score=60.58 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEE
Q 035832 187 PLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v 229 (245)
|||+++..+..++++.+.+... . .+..+.+|..+.+...++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 8999999999999999988753 2 45566778888777777664
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00027 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+.+++|.|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00026 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998654
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.06 E-value=9.5e-05 Score=58.99 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..+.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999997643
No 277
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.04 E-value=0.00019 Score=61.44 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=34.2
Q ss_pred ceeeeeeEEEcCC-----------CEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 035832 33 DILNGVSFSLPEK-----------SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77 (245)
Q Consensus 33 ~il~~vsl~i~~G-----------e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 77 (245)
.+++.+...+..+ ..+.|.||+|+|||||.++|++...+..+.+.
T Consensus 24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 3555555555543 58999999999999999999998877666443
No 278
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.02 E-value=0.00034 Score=55.60 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 279
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.01 E-value=0.00034 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 280
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00025 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999743
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.00 E-value=0.00038 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999887653
No 282
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.0005 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997543
No 283
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.94 E-value=0.00044 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.93 E-value=0.00045 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.+++|+|+.||||||+.+.|+.-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999843
No 285
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.92 E-value=0.0004 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 78999999999999999998653
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.91 E-value=0.00041 Score=54.61 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999863
No 287
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00037 Score=55.06 Aligned_cols=25 Identities=44% Similarity=0.426 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
=.++|+|+.|||||||++.+++-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
No 288
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.0005 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 289
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.00049 Score=55.76 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 290
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00052 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.251 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
No 291
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.88 E-value=0.00046 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.88 E-value=0.00058 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
=++++|+|+.||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00054 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.86 E-value=0.00066 Score=54.47 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 295
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00048 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+-++.|+|++||||||+.+.|+--
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999743
No 296
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.86 E-value=0.00054 Score=53.05 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.86 E-value=0.00057 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 298
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.85 E-value=0.00077 Score=58.69 Aligned_cols=46 Identities=28% Similarity=0.182 Sum_probs=35.8
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC----CCCCCcceEEEc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG----LSKPTSGSINIR 79 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G----l~~p~~G~i~~~ 79 (245)
..+++..+.+ .|.-++|+|+||+|||||...+.+ ++..+...|...
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 4688888888 788999999999999999998887 444444444443
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.00061 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+..+++|.|+.||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999743
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.84 E-value=0.00062 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 301
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.84 E-value=0.00044 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 302
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.83 E-value=0.00043 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+.|.||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
No 303
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00055 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 304
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.0006 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.82 E-value=0.0005 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 306
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00063 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 307
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.82 E-value=0.0021 Score=59.14 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=57.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHH--hh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEe
Q 035832 154 LDKDPHSLSGGYKRRLALAIQL--VQ---------------VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVS 216 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral--~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~t 216 (245)
+++....+||||+|-.-+|.+. +. .-.++++||. +-+|.+..+..+++++++ +.-+|++|
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 3455788999999965444433 22 2268999999 999999999999999977 45678888
Q ss_pred cChhHHHhhccEEEEEe
Q 035832 217 HDLKEMAALVDHSWRMD 233 (245)
Q Consensus 217 Hd~~~~~~~~d~v~~l~ 233 (245)
=+ .+..++|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 5667889888775
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.81 E-value=0.00085 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999874
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.80 E-value=0.00052 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 310
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.80 E-value=0.00062 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 311
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.79 E-value=0.00053 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988754
No 312
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.79 E-value=0.00077 Score=54.81 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999986543
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.78 E-value=0.00047 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998653
No 314
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.78 E-value=0.00057 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
=.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999853
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.77 E-value=0.00055 Score=52.19 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.76 E-value=0.00057 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998764
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.76 E-value=0.0007 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 318
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.75 E-value=0.0006 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998864
No 319
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.75 E-value=0.00044 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.450 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999999985
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.75 E-value=0.00058 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999865
No 321
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.75 E-value=0.0004 Score=59.75 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.75 E-value=0.00058 Score=52.24 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999987653
No 323
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.00078 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999854
No 324
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.74 E-value=0.0018 Score=59.04 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.6
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555544589999999999999999999876654
No 325
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.74 E-value=0.0006 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999887654
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.73 E-value=0.00061 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 327
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.73 E-value=0.00065 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.72 E-value=0.00055 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998654
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.72 E-value=0.00063 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 330
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.70 E-value=0.00085 Score=57.92 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.+.|-.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 331
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.69 E-value=0.00062 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 332
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.00093 Score=54.79 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999743
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.66 E-value=0.00087 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
No 334
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.001 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.++-+++|+||.||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 335
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.65 E-value=0.00075 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998643
No 336
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.65 E-value=0.00075 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 337
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.65 E-value=0.00077 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998753
No 338
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.64 E-value=0.00081 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|++|+|||||++.|.+-..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 78999999999999999987643
No 339
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.64 E-value=0.00075 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.64 E-value=0.0008 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
++|+|+.|+|||||++.+.|....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 689999999999999999987643
No 341
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.64 E-value=0.00076 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998763
No 342
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.63 E-value=0.00094 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 343
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.63 E-value=0.0009 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 344
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.63 E-value=0.00079 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999753
No 345
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.63 E-value=0.00078 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 346
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.63 E-value=0.001 Score=57.49 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|+.|+|||||++.|.|-.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999863
No 347
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.0013 Score=51.12 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 348
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.60 E-value=0.00085 Score=51.22 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 349
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.60 E-value=0.001 Score=55.28 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=22.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+|-++.+.|+.||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999986653
No 350
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.58 E-value=0.0012 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.=.++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357899999999999999998754
No 351
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.57 E-value=0.00091 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
No 352
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.57 E-value=0.0009 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.56 E-value=0.00082 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999854
No 354
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.00092 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998644
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.56 E-value=0.00093 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 356
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.55 E-value=0.00087 Score=59.66 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 357
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.54 E-value=0.0012 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 358
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.53 E-value=0.0012 Score=55.53 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999964
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.53 E-value=0.001 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 360
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.53 E-value=0.0012 Score=55.05 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0013 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997543
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.001 Score=53.69 Aligned_cols=23 Identities=48% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 363
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.51 E-value=0.00081 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.51 E-value=0.0012 Score=53.50 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
No 365
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.50 E-value=0.0013 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 366
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.50 E-value=0.0014 Score=52.16 Aligned_cols=22 Identities=45% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 367
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.49 E-value=0.00096 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997643
No 368
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.49 E-value=0.0014 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G 67 (245)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 369
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.49 E-value=0.0011 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999754
No 370
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.49 E-value=0.0015 Score=58.83 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.-.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999753
No 371
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.48 E-value=0.0015 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+|-++++.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999976554
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.48 E-value=0.0011 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 373
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.48 E-value=0.0011 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998654
No 374
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998865
No 375
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.47 E-value=0.0016 Score=55.14 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 75 (245)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 478999999999999999999987654443
No 376
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.47 E-value=0.0015 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.46 E-value=0.0024 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999983
No 378
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.46 E-value=0.0011 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8899999999999999998754
No 379
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.46 E-value=0.001 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999865
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.46 E-value=0.0015 Score=53.37 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0011 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4889999999999999999873
No 382
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.44 E-value=0.0015 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 384
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.44 E-value=0.0017 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.++++.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.43 E-value=0.0019 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+-.+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 386
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0011 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999997643
No 387
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.43 E-value=0.0014 Score=56.56 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 176 VQVPDLLILDEPLA-GLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 176 ~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
..+|++|++||+-. .-+...++.++..+..+.+ +..+|++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 35699999999855 2344778888988887654 556666665
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.43 E-value=0.0012 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988743
No 389
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.0018 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567779999999999999999998754
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0015 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.42 E-value=0.0013 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999986
No 392
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.40 E-value=0.0017 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998854
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0013 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988653
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.40 E-value=0.0013 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.39 E-value=0.0016 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 396
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.38 E-value=0.0018 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|+|||||++.+.+-..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 397
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.38 E-value=0.0014 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998653
No 398
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.38 E-value=0.0017 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.37 E-value=0.0012 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 400
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.37 E-value=0.0014 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.37 E-value=0.0031 Score=50.24 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=27.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4566666666 588899999999999999887753
No 402
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.37 E-value=0.002 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.36 E-value=0.0019 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999866
No 404
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.35 E-value=0.0019 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.35 E-value=0.002 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 406
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.35 E-value=0.0019 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998643
No 407
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998653
No 408
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.35 E-value=0.0019 Score=59.25 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.0
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+++.+ +.+-+|+..+|+|++|+|||||++.|+.-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45555 6677899999999999999999999986544
No 409
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0013 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 410
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.34 E-value=0.0015 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 411
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0013 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 412
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0016 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.33 E-value=0.0015 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0017 Score=53.47 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+-.+.+..++.|+||.||||+|..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456778999999999999999999984
No 415
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.32 E-value=0.0018 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 416
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.32 E-value=0.0028 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=29.8
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..++..-+.+ .|..++|+||+|||||||...|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4577777776 58889999999999999999987643
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.002 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0016 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0016 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998643
No 420
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.30 E-value=0.0014 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.30 E-value=0.0016 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998654
No 422
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.30 E-value=0.0023 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=26.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.+|.++.+-|+.||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887765
No 423
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.00071 Score=66.16 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=35.2
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.++.+.+++.++|.||+|+|||||.++|++... .+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 366778999999999999999999999999874 34555555444
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.28 E-value=0.0013 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
No 425
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0021 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999987653
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.27 E-value=0.0013 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=8.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998654
No 427
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.27 E-value=0.0022 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.27 E-value=0.0019 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
=.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC
Confidence 348999999999999999997643
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.26 E-value=0.0024 Score=52.78 Aligned_cols=28 Identities=43% Similarity=0.444 Sum_probs=24.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+|-++++.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999986553
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.24 E-value=0.0028 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998743
No 431
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0017 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.23 E-value=0.0019 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888654
No 433
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.23 E-value=0.0019 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 588999999999999999998753
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.22 E-value=0.0024 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 435
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.22 E-value=0.0017 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 436
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.21 E-value=0.0024 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.20 E-value=0.033 Score=58.32 Aligned_cols=145 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
+++|+++.|.||+|+|||||...++.......+.+.| +-+..+...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vly----------------------is~E~s~~~------------ 425 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF----------------------IDAEHALDP------------ 425 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE----------------------ECTTSCCCH------------
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE----------------------EEccCchHH------------
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH--------
Q 035832 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW-------- 193 (245)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~-------- 193 (245)
...+.+|++.. .=.....-+..|-....-..+--.+|+++++|..++=...
T Consensus 426 --------------------~~a~~lGvd~~-~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g 484 (1706)
T 3cmw_A 426 --------------------IYARKLGVDID-NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 484 (1706)
T ss_dssp --------------------HHHHHTTCCGG-GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTT
T ss_pred --------------------HHHHHcCCCHH-HeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccc
Q ss_pred -----HHHHHHHHHHHHh----hc-CceEEEEecChhH----------------HHhhccEEEEEeCCeEEEec
Q 035832 194 -----KARADVVKLLKHL----KK-ELTILVVSHDLKE----------------MAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 194 -----~~~~~i~~~l~~l----~~-~~tiii~tHd~~~----------------~~~~~d~v~~l~~G~i~~~~ 241 (245)
...+.+.+.++.+ ++ +++||+++|-... +..++|-++.+.....+.++
T Consensus 485 ~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 485 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccC
No 438
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0027 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 439
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.18 E-value=0.0024 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 440
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.18 E-value=0.00069 Score=56.76 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=23.4
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.+....| +.|.||+|+|||||++.++..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 779999999999999999864
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.17 E-value=0.0028 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0035 Score=51.37 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=38.2
Q ss_pred HHHhhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhhc--CceEEEEecChhH----------HHhhccEEEEEe
Q 035832 173 IQLVQVPDLLILDEPLA----GLDWKARADVVKLLKHLKK--ELTILVVSHDLKE----------MAALVDHSWRMD 233 (245)
Q Consensus 173 ral~~~p~llllDEPts----~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~----------~~~~~d~v~~l~ 233 (245)
.+--.+|+++++|--+. .-|.....++...|..+.+ +.++++++|-... ....||-|+.|.
T Consensus 130 ~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 33456889999995431 1134445566666666643 6899999885321 245789888875
No 443
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.14 E-value=0.0035 Score=47.67 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=27.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecC
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHD 218 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd 218 (245)
.+|++||. ..|++..+..+++.+.....+..+|++|+.
T Consensus 78 g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 57899997 478888888888888544444566777663
No 444
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.13 E-value=0.0022 Score=58.43 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999883
No 445
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.13 E-value=0.002 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998743
No 446
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.001 Score=57.63 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
++.++++|| ...|++.....+.+.+.+......+|+++++.+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 788999999999988887765556777776654
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.13 E-value=0.0018 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998766
No 448
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.12 E-value=0.0012 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+++-.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 449
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0022 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 450
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.08 E-value=0.0019 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 451
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.06 E-value=0.00081 Score=61.12 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=30.9
Q ss_pred EEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 40 FSLPEK--SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 40 l~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
|.+.++ .+++++|++|+||||++..|++.+......|.+-.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 444444 58999999999999999999998764444565533
No 452
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.06 E-value=0.0013 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=4.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998876
No 453
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.05 E-value=0.0037 Score=49.88 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChh----------HHHhhccEEEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLK----------EMAALVDHSWRMD 233 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~----------~~~~~~d~v~~l~ 233 (245)
+++++++||--. +++. +.+.|..+. .+..|+++.++.+ .+..++|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 5543 344444443 3678888888544 2345689987775
No 454
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.04 E-value=0.0031 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999998887653
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.04 E-value=0.0036 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.003 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.95 E-value=0.0028 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37899999999999999997643
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.91 E-value=0.0044 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.87 E-value=0.0034 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 460
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.0039 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.83 E-value=0.0041 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999988874
No 462
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.80 E-value=0.0052 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|.++++=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987653
No 463
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.0048 Score=48.98 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
++.++++||. ..+++.....+.+++.+...+..+|++|+..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 6789999995 56778877788887776544566777777653
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0036 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998754
No 465
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.74 E-value=0.0048 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.73 E-value=0.0058 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888765
No 467
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.69 E-value=0.007 Score=51.65 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
-.++++|.+|+|||||+|.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 36899999999999999999997644333
No 468
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.58 E-value=0.0057 Score=54.84 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llll 184 (245)
.+.++++.++... +...+|..+..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 3556666666542 1347899998888777667778988887
No 469
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.55 E-value=0.0054 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 470
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.55 E-value=0.0082 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 471
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.55 E-value=0.0035 Score=57.08 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=28.5
Q ss_pred eeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q 035832 36 NGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 36 ~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+.+.-.+..|.+ +.|.||+|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444555566665 889999999999999999987654
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.53 E-value=0.008 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 473
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.52 E-value=0.0067 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+...+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999874
No 474
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.49 E-value=0.0023 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4889999999999999888753
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.50 E-value=0.0076 Score=50.99 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.-+.|.||.|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.0082 Score=52.05 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.45 E-value=0.0078 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998664
No 478
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.44 E-value=0.0079 Score=52.45 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
+|..+.|.||.|+|||||.+.++..+......+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~ 103 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI 103 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc
Confidence 46689999999999999999999876533233333
No 479
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.44 E-value=0.0014 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.+.+-..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987543
No 480
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.40 E-value=0.0081 Score=52.69 Aligned_cols=26 Identities=50% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++..+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999765
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.40 E-value=0.0087 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
....+.|.||.|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567888999999999999998654
No 482
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.37 E-value=0.0057 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999965
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.37 E-value=0.012 Score=49.08 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=23.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||+|.+.|+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3456788999999999999999987654
No 484
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.0094 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998654
No 485
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.34 E-value=0.01 Score=52.08 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..-+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999998654
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.33 E-value=0.0084 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577888899999999999999999875
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.30 E-value=0.0045 Score=50.00 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhh
Q 035832 168 RLALAIQLVQVPDLLILDEPLA-----GLDWKARADVVKLLKHLK 207 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~ 207 (245)
.-.|++.+..+|.+...++|+. .+|+..++++.+.++...
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 4478888999999888888776 788888888887776654
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.011 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+..-+.|.||.|+|||||.+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999865
No 489
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.29 E-value=0.0075 Score=53.12 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 035832 159 HSLSGGYKRRLALAIQL---VQ--VPDLLILDEPL 188 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral---~~--~p~llllDEPt 188 (245)
..+|+||+||..++++| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 77 89999999997
No 490
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.27 E-value=0.0077 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999986
No 491
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.22 E-value=0.01 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|-++.|.|.+||||||+.+.|+-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 492
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.21 E-value=0.011 Score=51.95 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=25.6
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
..+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345555554445889999999999999999874
No 493
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.21 E-value=0.0099 Score=56.38 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
+|.++.|+|.+||||||+.+.|+-.+.. .| .+.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHh
Confidence 5678999999999999999999865421 12 455555443
No 494
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.20 E-value=0.011 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 468999999999999999999876653
No 495
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.20 E-value=0.0062 Score=46.20 Aligned_cols=38 Identities=5% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
..+|++||. ..|++..+..+++.+.+... +..+|++|+
T Consensus 76 ~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 467999996 46888888888888877642 456676665
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.19 E-value=0.01 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
..||+|+.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999998864
No 497
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.19 E-value=0.0087 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|..|+|||||++.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 498
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.18 E-value=0.012 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.|.++.|.||.|+|||||++.++..
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 4689999999999999999998754
No 499
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.15 E-value=0.01 Score=54.96 Aligned_cols=29 Identities=7% Similarity=-0.182 Sum_probs=25.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+.|-++.|+|.+||||||+-+.|+..+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57788999999999999999999887653
No 500
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.14 E-value=0.014 Score=47.27 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhhcCceEEEEecCh-hHHHhhccEEEEEeCCeEEEe
Q 035832 166 KRRLALAIQLV--QVPDLLILDEPLA--GLDWKARADVVKLLKHLKKELTILVVSHDL-KEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 166 kqrv~iAral~--~~p~llllDEPts--~LD~~~~~~i~~~l~~l~~~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+..+.-|+..+ .+.+++||||.+. .++.....+++++|.+..+...||+++.+. +++..+||.|-.|..-+--.+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH~~~ 185 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVKHAFD 185 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSCCC--
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecceeCchh
Confidence 44455566666 5689999999976 344455567888887655567899999864 557789999999986554333
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
.
T Consensus 186 ~ 186 (196)
T 1g5t_A 186 A 186 (196)
T ss_dssp -
T ss_pred c
Confidence 3
Done!