BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035836
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC--SKLESIAERLDNN 122
L EL I +C LT ELP L S + L +L + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 123 TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE--GGLPCAKLTRLDIYD 180
+L+++ I N L L +H+L +L+++++ C L ++ GG A L RL + D
Sbjct: 206 QNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 181 CERLEALPKGLHNLTSLQELTIGKGV---ELPSLEEDGLPTN 219
C L LP +H LT L++L + V LPSL LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 179 YDCERLEALPKGLHNLTSLQELTIGK-GVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIE 237
Y ERL AL K + +L IG+ E P +D L + HSL I +S
Sbjct: 7 YPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRA 66
Query: 238 WGRGFHRFSSLRRLAISGCDDDMVS 262
RGF + RR I +++++S
Sbjct: 67 AQRGFFK----RRFKIELKENELIS 87
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 118 RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK 172
+ D T L+T+ C S+ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 118 RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK 172
+ D T L+T+ C S+ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 128 IDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP-----CAKLTRLDIYDCE 182
+DIS+ + ++ +G+ N L +E+ + SF E LP LT LD+ C+
Sbjct: 426 LDISHTHT-RVAFNGIFN--GLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 183 RLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEW 238
+ P ++L+SLQ L + +L S+ DG+ L SL+ +IW T W
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASN-QLKSV-PDGIFDRLTSLQ-----KIWLHTNPW 530
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 118 RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK 172
+ D T L+T+ C ++ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
pdb|4FU0|B Chain B, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
Length = 357
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQXXXXXXXXX 61
CDT SS ++ H L +AG+ +P S+ R + EE
Sbjct: 129 CDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFN----------EEAAMKEIEANLTY 178
Query: 62 XXLLEELRICSCRSLTCIFSKNELPATLE 90
++ +R S +T + K EL A +E
Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIE 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,850,230
Number of Sequences: 62578
Number of extensions: 438195
Number of successful extensions: 880
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 19
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)