Query 035836
Match_columns 380
No_of_seqs 175 out of 2662
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.6E-22 3.5E-27 209.2 18.7 257 101-374 166-424 (968)
2 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.8E-27 208.4 20.2 269 27-341 609-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-22 2.8E-27 209.9 16.5 206 2-229 160-367 (968)
4 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.7E-26 202.4 21.2 292 2-341 554-885 (1153)
5 KOG4194 Membrane glycoprotein 99.8 4E-21 8.7E-26 174.2 3.5 296 2-337 98-428 (873)
6 KOG4194 Membrane glycoprotein 99.8 8.7E-21 1.9E-25 172.0 3.0 298 6-332 125-446 (873)
7 KOG0444 Cytoskeletal regulator 99.7 5E-20 1.1E-24 168.6 -5.3 222 101-339 152-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 3.7E-17 8E-22 150.0 -3.7 203 100-318 174-378 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 6.1E-18 1.3E-22 147.3 -11.2 262 8-313 47-308 (565)
10 KOG0618 Serine/threonine phosp 99.6 3E-16 6.6E-21 149.8 -1.4 224 94-337 236-488 (1081)
11 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 133.9 16.5 253 8-336 203-456 (788)
12 KOG0472 Leucine-rich repeat pr 99.5 7.1E-17 1.5E-21 140.8 -9.9 263 30-337 46-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 3.7E-13 8E-18 131.8 14.3 237 6-316 222-458 (788)
14 KOG0618 Serine/threonine phosp 99.4 5.9E-15 1.3E-19 141.2 -2.4 243 28-315 218-489 (1081)
15 PRK15370 E3 ubiquitin-protein 99.4 7E-13 1.5E-17 130.4 11.1 242 7-311 179-424 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.3E-17 129.2 12.3 247 28-338 177-428 (754)
17 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.5E-19 126.8 -1.7 282 18-336 57-357 (498)
18 KOG4341 F-box protein containi 99.4 4.9E-15 1.1E-19 130.0 -4.7 300 30-361 139-456 (483)
19 KOG4341 F-box protein containi 99.3 2.9E-14 6.4E-19 125.2 -4.5 294 7-323 139-447 (483)
20 KOG0617 Ras suppressor protein 99.3 6.1E-14 1.3E-18 108.9 -5.1 155 100-264 34-189 (264)
21 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-12 3.5E-17 117.7 2.3 33 278-311 250-287 (319)
22 KOG0617 Ras suppressor protein 99.2 4.2E-13 9.2E-18 104.3 -4.1 159 121-320 31-190 (264)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.8E-11 1.1E-15 108.1 2.9 164 195-365 137-318 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.0 8.6E-11 1.9E-15 117.7 2.7 266 22-320 516-788 (889)
25 KOG4658 Apoptotic ATPase [Sign 99.0 4.5E-10 9.7E-15 112.6 6.4 254 7-296 524-788 (889)
26 KOG4237 Extracellular matrix p 98.9 3E-11 6.5E-16 105.8 -5.4 257 95-366 63-358 (498)
27 KOG3207 Beta-tubulin folding c 98.8 9.6E-10 2.1E-14 97.8 -0.2 207 100-316 122-339 (505)
28 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 91.1 0.6 57 100-156 198-255 (505)
29 PRK15386 type III secretion pr 98.6 5.8E-07 1.3E-11 81.7 10.8 94 119-227 48-141 (426)
30 KOG1259 Nischarin, modulator o 98.5 4.6E-08 9.9E-13 83.3 2.5 129 172-319 285-415 (490)
31 KOG2120 SCF ubiquitin ligase, 98.5 6.8E-09 1.5E-13 88.1 -3.3 181 123-313 185-374 (419)
32 KOG0532 Leucine-rich repeat (L 98.4 6.1E-09 1.3E-13 95.7 -5.0 100 102-206 78-177 (722)
33 COG4886 Leucine-rich repeat (L 98.4 2.3E-07 5E-12 86.7 5.0 170 122-311 115-286 (394)
34 KOG1259 Nischarin, modulator o 98.4 6.2E-08 1.3E-12 82.5 0.6 100 100-205 285-384 (490)
35 KOG2120 SCF ubiquitin ligase, 98.4 7.7E-09 1.7E-13 87.8 -4.9 28 29-56 234-261 (419)
36 PF14580 LRR_9: Leucine-rich r 98.3 3.1E-07 6.7E-12 74.3 3.1 35 277-312 87-123 (175)
37 PRK15386 type III secretion pr 98.3 4.6E-06 1E-10 75.9 9.7 166 143-340 48-215 (426)
38 COG4886 Leucine-rich repeat (L 98.2 5.5E-07 1.2E-11 84.1 2.9 174 95-288 113-287 (394)
39 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-06 2.8E-11 70.7 4.3 105 216-338 17-126 (175)
40 KOG1909 Ran GTPase-activating 98.2 1.5E-07 3.2E-12 81.8 -2.3 115 170-288 184-308 (382)
41 KOG1909 Ran GTPase-activating 98.1 6.8E-07 1.5E-11 77.8 0.9 231 100-337 31-310 (382)
42 PLN03150 hypothetical protein; 98.1 7.7E-06 1.7E-10 80.5 7.8 106 125-230 420-527 (623)
43 KOG0532 Leucine-rich repeat (L 98.1 1.5E-07 3.4E-12 86.7 -4.0 154 95-262 95-248 (722)
44 PF13855 LRR_8: Leucine rich r 98.0 5.3E-06 1.1E-10 54.9 3.8 58 246-312 1-59 (61)
45 PF13855 LRR_8: Leucine rich r 98.0 9.7E-06 2.1E-10 53.6 4.2 58 6-74 1-60 (61)
46 PLN03150 hypothetical protein; 97.8 4.3E-05 9.3E-10 75.3 7.6 111 149-263 420-531 (623)
47 KOG1947 Leucine rich repeat pr 97.8 1.9E-06 4.1E-11 82.7 -2.7 136 28-179 187-329 (482)
48 KOG1947 Leucine rich repeat pr 97.6 9.6E-06 2.1E-10 77.8 -1.5 41 302-342 401-444 (482)
49 KOG0531 Protein phosphatase 1, 97.6 9.7E-06 2.1E-10 76.1 -1.6 76 100-180 96-171 (414)
50 PF12799 LRR_4: Leucine Rich r 97.5 0.00015 3.3E-09 44.0 3.3 40 278-319 1-40 (44)
51 KOG2982 Uncharacterized conser 97.3 0.0004 8.7E-09 59.8 4.6 56 100-156 72-130 (418)
52 KOG3665 ZYG-1-like serine/thre 97.2 0.00028 6E-09 69.8 4.2 104 171-287 122-229 (699)
53 PF12799 LRR_4: Leucine Rich r 97.2 0.00058 1.3E-08 41.4 4.1 38 100-139 2-39 (44)
54 KOG1644 U2-associated snRNP A' 97.1 0.0016 3.4E-08 53.0 6.7 108 218-341 42-156 (233)
55 KOG0531 Protein phosphatase 1, 97.1 7.7E-05 1.7E-09 70.1 -0.9 196 100-320 73-272 (414)
56 KOG3665 ZYG-1-like serine/thre 97.1 0.00026 5.5E-09 70.0 2.3 135 28-183 121-262 (699)
57 KOG1859 Leucine-rich repeat pr 96.9 9.6E-06 2.1E-10 77.4 -8.7 104 215-336 184-290 (1096)
58 KOG1859 Leucine-rich repeat pr 96.6 2.8E-05 6E-10 74.4 -8.3 125 100-230 165-291 (1096)
59 KOG2982 Uncharacterized conser 96.6 0.00084 1.8E-08 57.8 1.2 82 276-361 197-283 (418)
60 COG5238 RNA1 Ran GTPase-activa 96.6 0.0021 4.5E-08 54.8 3.4 88 168-255 89-194 (388)
61 KOG1644 U2-associated snRNP A' 96.2 0.011 2.4E-07 48.3 5.2 83 144-228 61-150 (233)
62 KOG3864 Uncharacterized conser 95.8 0.0013 2.8E-08 53.5 -1.7 81 172-255 102-185 (221)
63 PF13306 LRR_5: Leucine rich r 95.4 0.2 4.3E-06 38.3 9.6 13 242-254 77-89 (129)
64 KOG2739 Leucine-rich acidic nu 95.3 0.0052 1.1E-07 52.1 0.1 36 277-313 90-127 (260)
65 KOG2123 Uncharacterized conser 95.0 0.0011 2.5E-08 56.5 -4.4 79 171-255 19-97 (388)
66 PF13306 LRR_5: Leucine rich r 94.4 0.23 5E-06 37.9 7.6 51 100-155 59-111 (129)
67 KOG2123 Uncharacterized conser 94.1 0.0071 1.5E-07 51.8 -1.7 55 194-255 18-72 (388)
68 KOG4579 Leucine-rich repeat (L 94.1 0.011 2.5E-07 45.1 -0.5 59 244-311 51-109 (177)
69 KOG4579 Leucine-rich repeat (L 93.9 0.0047 1E-07 47.2 -2.8 82 100-183 28-112 (177)
70 KOG2739 Leucine-rich acidic nu 93.9 0.027 5.9E-07 47.8 1.3 58 100-158 66-127 (260)
71 KOG3864 Uncharacterized conser 93.7 0.011 2.4E-07 48.2 -1.2 65 4-77 123-190 (221)
72 COG5238 RNA1 Ran GTPase-activa 93.7 0.046 1E-06 46.9 2.3 41 117-157 86-130 (388)
73 PF13504 LRR_7: Leucine rich r 92.3 0.091 2E-06 24.5 1.3 10 303-312 2-11 (17)
74 PF00560 LRR_1: Leucine Rich R 91.6 0.11 2.4E-06 26.0 1.2 8 125-132 2-9 (22)
75 smart00367 LRR_CC Leucine-rich 90.8 0.15 3.3E-06 26.7 1.3 17 301-317 1-17 (26)
76 smart00370 LRR Leucine-rich re 81.4 0.98 2.1E-05 23.4 1.3 19 302-321 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 81.4 0.98 2.1E-05 23.4 1.3 19 302-321 2-20 (26)
78 PF05725 FNIP: FNIP Repeat; I 59.4 18 0.00038 21.6 3.4 32 302-334 12-43 (44)
79 smart00364 LRR_BAC Leucine-ric 56.6 7.4 0.00016 20.4 1.1 18 302-320 2-19 (26)
80 PF13516 LRR_6: Leucine Rich r 54.0 9.7 0.00021 19.1 1.4 12 29-40 2-13 (24)
81 KOG3763 mRNA export factor TAP 37.1 11 0.00025 36.0 0.1 11 195-205 244-254 (585)
82 smart00365 LRR_SD22 Leucine-ri 34.9 31 0.00066 18.0 1.4 16 302-318 2-17 (26)
83 smart00368 LRR_RI Leucine rich 22.8 54 0.0012 17.2 1.1 10 7-16 3-12 (28)
84 KOG0473 Leucine-rich repeat pr 21.2 1.6 3.5E-05 36.9 -7.5 79 101-182 44-122 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.6e-22 Score=209.17 Aligned_cols=257 Identities=18% Similarity=0.117 Sum_probs=117.5
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD 180 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 180 (380)
|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|+++++.....+|..+..+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 55555544433334444444455555555544443344444444445555555544322223343444444555555554
Q ss_pred CCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCC
Q 035836 181 CERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDD 259 (380)
Q Consensus 181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 259 (380)
|.....+|..+.++++|+.|++++|......| ....+++|+.|++++|......+ .+ +..+++|+.|++++ |..
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~---~~~l~~L~~L~l~~-n~~ 320 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-EL---VIQLQNLEILHLFS-NNF 320 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hh---HcCCCCCcEEECCC-Ccc
Confidence 44333444444445555555555443322222 12334455555555443222111 11 33445555555554 322
Q ss_pred CcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhH
Q 035836 260 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLI 338 (380)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l 338 (380)
...++... ..+++|+.|+++++.-...+|..+..+++|+.|++++|.--..+|.. ...++|+.|++.+|...
T Consensus 321 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKIPVAL-------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred CCcCChhH-------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 22333222 34555666666554332344545555566666666553222222221 11235566666555432
Q ss_pred HHHhhccCCCCCccccCcCeeEECceeeecCCCCCC
Q 035836 339 EEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTED 374 (380)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (380)
. .....+..++.+..+.+.++.+...+|..+
T Consensus 394 ~-----~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 394 G-----EIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred c-----cCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 2 112233445667777777777766656543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.7e-22 Score=208.39 Aligned_cols=269 Identities=25% Similarity=0.406 Sum_probs=188.3
Q ss_pred CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
.+.+|++|++.++. +..++.+ +..+++ |+.|+++++..+..+ | .+..++ +|++|++
T Consensus 609 ~~~~L~~L~L~~s~-l~~L~~~--~~~l~~--------Lk~L~Ls~~~~l~~i------p------~ls~l~-~Le~L~L 664 (1153)
T PLN03210 609 RPENLVKLQMQGSK-LEKLWDG--VHSLTG--------LRNIDLRGSKNLKEI------P------DLSMAT-NLETLKL 664 (1153)
T ss_pred CccCCcEEECcCcc-ccccccc--cccCCC--------CCEEECCCCCCcCcC------C------ccccCC-cccEEEe
Confidence 34556666666554 5554433 344555 777887776655544 2 233445 6899999
Q ss_pred ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccc
Q 035836 107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA 186 (380)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 186 (380)
.+|..+..+|..+..+++|+.|++++|+.+..+|..+ ++++|+.|++++|..+..+|.. .++|+.|++.++. +..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEE 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccc
Confidence 8888888888888888899999998888888888655 6888888888888776666542 2356666666543 333
Q ss_pred ccccC------------------------------CCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhh
Q 035836 187 LPKGL------------------------------HNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKST 235 (380)
Q Consensus 187 ~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 235 (380)
+|..+ ...++|+.|++++|.....+|. ...+++|+.|++.+|..+..++
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 33211 1134677788887776666664 3678889999998888776655
Q ss_pred hhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCC
Q 035836 236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKL 315 (380)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 315 (380)
. ...+++|+.|++++ |..+..++. .+++|++|++++ +.++.+|..+..+++|+.|++.+|+++
T Consensus 820 ~-----~~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 820 T-----GINLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred C-----CCCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCc
Confidence 3 22578888899988 777777664 346788888888 678888888888888888888888888
Q ss_pred cccCCC-CCcccccEEEecCchhHHHH
Q 035836 316 KYFPEK-GLPSSLLELWIWDCPLIEEK 341 (380)
Q Consensus 316 ~~~~~~-~~~~~L~~L~l~~c~~l~~~ 341 (380)
+.++.. .-.++|+.+++++|+.++..
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CccCcccccccCCCeeecCCCcccccc
Confidence 887763 22457888888888877643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.3e-22 Score=209.92 Aligned_cols=206 Identities=19% Similarity=0.181 Sum_probs=127.8
Q ss_pred CCCCCCccEEEEecCCCCccccC-CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIF 80 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 80 (380)
++.+++|++|++++|.....+|. ...+++|++|++++|.-...+|. .+..++. |+.|+++++.....+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~--------L~~L~L~~n~l~~~~- 228 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR--ELGQMKS--------LKWIYLGYNNLSGEI- 228 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh--HHcCcCC--------ccEEECcCCccCCcC-
Confidence 45788999999998865555554 45688999999998873334444 3566666 888888876432211
Q ss_pred ccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccc
Q 035836 81 SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENL 160 (380)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 160 (380)
|. .+..++ +|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|++|++++|...
T Consensus 229 -----p~-----~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 229 -----PY-----EIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred -----Ch-----hHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 21 234445 5777777776544466666777777777777765555556666666677777777664333
Q ss_pred eeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCC
Q 035836 161 VSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 161 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 229 (380)
..+|..+..+++|+.|++.+|.....+|..+..+++|+.|++.+|......|. ...+++|+.|++++|.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 34454455566666666666655555555566666666666666544333332 2344555666655554
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.7e-21 Score=202.42 Aligned_cols=292 Identities=23% Similarity=0.322 Sum_probs=224.5
Q ss_pred CCCCCCccEEEEecCC--C---C-ccccC-C-CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC
Q 035836 2 CDTNSSLEILEIWVCH--S---L-TYIAG-V-QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC 73 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~--~---~-~~~~~-~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 73 (380)
|.+|++|+.|.+.... . . ..+|. + ..+++|+.|.+.+++ ++.+|.. + ...+ |+.|++.++
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~--f-~~~~--------L~~L~L~~s 621 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSN--F-RPEN--------LVKLQMQGS 621 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCc--C-CccC--------CcEEECcCc
Confidence 5678999999996542 1 1 11222 1 224679999999987 8888865 2 3455 999999886
Q ss_pred CCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEE
Q 035836 74 RSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIE 153 (380)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 153 (380)
. +..+ +. .+..++ +|+.|+++++..++.+|. +..+++|++|++++|..+..+|..+.++++|+.|+
T Consensus 622 ~-l~~L------~~-----~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 622 K-LEKL------WD-----GVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred c-cccc------cc-----ccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 4 4433 11 244566 699999999877887774 77899999999999999999999999999999999
Q ss_pred ccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC-------------------
Q 035836 154 IWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED------------------- 214 (380)
Q Consensus 154 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------------- 214 (380)
+++|..+..+|... .+++|+.|++++|..+..+|.. .++|+.|+++++. +..+|..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhc
Confidence 99999999998765 6789999999999887777653 3567888887764 2222211
Q ss_pred ------------CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcce
Q 035836 215 ------------GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTS 282 (380)
Q Consensus 215 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 282 (380)
..+++|+.|++++|.....++.. ++++++|+.|++++ |..++.+|... .+++|++
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~-C~~L~~LP~~~--------~L~sL~~ 829 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN-CINLETLPTGI--------NLESLES 829 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC-CCCcCeeCCCC--------CccccCE
Confidence 12467888899888766655432 66899999999999 89999988755 6789999
Q ss_pred EecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHHH
Q 035836 283 LWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEEK 341 (380)
Q Consensus 283 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~ 341 (380)
|++++|..+..+|.. .++|+.|++++ +.++.+|.. ...++|++|++.+|++++..
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 999999988887753 36899999998 788888763 23678999999999999864
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=4e-21 Score=174.19 Aligned_cols=296 Identities=19% Similarity=0.221 Sum_probs=176.4
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCC-CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPP-SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIF 80 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 80 (380)
|-.+|+|+.+.+..+ .++.+|.++... +|+.|+|.++. +..+..+ .+..++. |++|+++.+ .+..+
T Consensus 98 f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se-~L~~l~a--------lrslDLSrN-~is~i- 164 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSE-ELSALPA--------LRSLDLSRN-LISEI- 164 (873)
T ss_pred HhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHH-HHHhHhh--------hhhhhhhhc-hhhcc-
Confidence 345677777777663 666777655533 37777776665 5555544 3444444 666666643 22222
Q ss_pred ccCCCCccccccccCCCC--CCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcccc
Q 035836 81 SKNELPATLESLEVGNLP--PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWEC 157 (380)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 157 (380)
+.-.+| .++++|++.+|.....-...|..+.+|..|.++. +.++.+|.. +.+++.|+.|++..+
T Consensus 165 ------------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 165 ------------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred ------------cCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence 111222 1355555555432222222344444444455544 344444422 223444444444331
Q ss_pred -----------------------ccceeccCCC-ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-
Q 035836 158 -----------------------ENLVSFTEGG-LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE- 212 (380)
Q Consensus 158 -----------------------~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 212 (380)
+.+..+.++. ..|.++++|++..|.....-..++.+++.|+.|++++|.......
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 3344444433 236677777777654433333566788888888888875433322
Q ss_pred CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCc-
Q 035836 213 EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL- 291 (380)
Q Consensus 213 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l- 291 (380)
.+..+++|+.|+|+.|.... ..... |..+..|++|.+++ +.+..+.+.. +.++++|+.|++++ +.+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~-l~~~s---f~~L~~Le~LnLs~--Nsi~~l~e~a------f~~lssL~~LdLr~-N~ls 378 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITR-LDEGS---FRVLSQLEELNLSH--NSIDHLAEGA------FVGLSSLHKLDLRS-NELS 378 (873)
T ss_pred hhhhcccceeEecccccccc-CChhH---HHHHHHhhhhcccc--cchHHHHhhH------HHHhhhhhhhcCcC-CeEE
Confidence 33567888888888876433 22222 66778888888887 6777776533 46888999999988 444
Q ss_pred ---cchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchh
Q 035836 292 ---ERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPL 337 (380)
Q Consensus 292 ---~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~ 337 (380)
++-...+..+++|++|.+.+ ++++.|+..++ ...|+.|++.+++.
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred EEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence 33344788899999999998 88999988665 46899999998553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8.7e-21 Score=172.03 Aligned_cols=298 Identities=19% Similarity=0.282 Sum_probs=186.4
Q ss_pred CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc--
Q 035836 6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS-- 81 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-- 81 (380)
.+|+.|+|+++ .+.++.. .+.++.|+.|+|+.+. +.+++.. .|..-.+ +++|+++++. ++.+..
T Consensus 125 ghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~-is~i~~~-sfp~~~n--------i~~L~La~N~-It~l~~~~ 192 (873)
T KOG4194|consen 125 GHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNL-ISEIPKP-SFPAKVN--------IKKLNLASNR-ITTLETGH 192 (873)
T ss_pred cceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhch-hhcccCC-CCCCCCC--------ceEEeecccc-cccccccc
Confidence 35777777774 3333332 3346667777777665 6666554 3333334 6667666542 222200
Q ss_pred -------------cCCCCccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCccccc-ccCC
Q 035836 82 -------------KNELPATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSG-LHNL 146 (380)
Q Consensus 82 -------------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l 146 (380)
.|.. .+++.-.+..+| +|+.|++..|. ++.+ .-.|..+++|+.|.+.. +.+..+.++ +..+
T Consensus 193 F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~-~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRI-TTLPQRSFKRLP-KLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGL 268 (873)
T ss_pred ccccchheeeecccCcc-cccCHHHhhhcc-hhhhhhccccc-eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeee
Confidence 0000 011110222344 25555555442 2222 22344455555555554 344444444 4558
Q ss_pred CCCcEEEccccccceeccCCC-ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEE
Q 035836 147 RQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSL 223 (380)
Q Consensus 147 ~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L 223 (380)
.++++|++.. ++++.+..+. ..+++|+.|++++|.....-++++..+++|+.|++++|. ++.+++. ..+..|++|
T Consensus 269 ~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 269 EKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhh
Confidence 8899999987 6777776644 568999999999987666556777888999999999884 4555433 457899999
Q ss_pred EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCC
Q 035836 224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ 302 (380)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~ 302 (380)
+|+.|.. +.+.. .. |.++++|++|+++. +.+...-+. -..++..+++|+.|.+.+ +.++.++. .+.+++
T Consensus 347 nLs~Nsi-~~l~e-~a--f~~lssL~~LdLr~--N~ls~~IED---aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 347 NLSHNSI-DHLAE-GA--FVGLSSLHKLDLRS--NELSWCIED---AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLE 416 (873)
T ss_pred cccccch-HHHHh-hH--HHHhhhhhhhcCcC--CeEEEEEec---chhhhccchhhhheeecC-ceeeecchhhhccCc
Confidence 9999863 22222 22 77899999999998 343322221 123456789999999999 89999998 899999
Q ss_pred CCceEeeecCCCCcccCCCCC-cccccEEEe
Q 035836 303 NLTILQLIDCPKLKYFPEKGL-PSSLLELWI 332 (380)
Q Consensus 303 ~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l 332 (380)
+|++|++.+ +-+.+|...++ +-.|++|.+
T Consensus 417 ~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 417 ALEHLDLGD-NAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred ccceecCCC-Ccceeecccccccchhhhhhh
Confidence 999999998 66777766555 336666654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=5e-20 Score=168.61 Aligned_cols=222 Identities=19% Similarity=0.206 Sum_probs=145.4
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccc-ceeccCCCccCCCCCEEecc
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECEN-LVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~ 179 (380)
|-.|++++| .+..+|+.+..+..|+.|++++|....---.-+..+++|++|.+++.++ +..+|..+..+.+|..++++
T Consensus 152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 455555554 2555555555555566666655322111011122344455555554332 33455555556677777777
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
. ..+..+|+.++.+++|+.|++++|.. +.+.. .....+|++|+++.|... ..+.. +.+++.|+.|.+.++--
T Consensus 231 ~-N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt-~LP~a----vcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 231 E-NNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRNQLT-VLPDA----VCKLTKLTKLYANNNKL 303 (1255)
T ss_pred c-cCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccchhc-cchHH----HhhhHHHHHHHhccCcc
Confidence 4 45667777788888888888887743 33322 245668888888886533 33321 45788888888877333
Q ss_pred CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836 259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL 337 (380)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 337 (380)
..+.+|.++ +.+..|+.+..++ ++++-+|..+..|+.|+.|.+.+ +.+..+|.. .+.+-|+.||+.++|+
T Consensus 304 ~FeGiPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 TFEGIPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccCCccch-------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 467788777 4677899998888 78898999999999999999976 788888884 4578899999999987
Q ss_pred HH
Q 035836 338 IE 339 (380)
Q Consensus 338 l~ 339 (380)
+.
T Consensus 375 LV 376 (1255)
T KOG0444|consen 375 LV 376 (1255)
T ss_pred cc
Confidence 75
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=3.7e-17 Score=150.03 Aligned_cols=203 Identities=22% Similarity=0.250 Sum_probs=145.0
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCC-CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEec
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESL-KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDI 178 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 178 (380)
+|++|.+++|+..-.-...+-++++|++|++++.+.. ..+|..+..+.+|..++++. +++..+|+....+++|+.|++
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheecc
Confidence 6888999988743333344555778888888875443 46788888888888999887 678888888888888999999
Q ss_pred cCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCC
Q 035836 179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD 257 (380)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (380)
++| .++.+.-......+|++|+++.| .++.+|. ...++.|+.|.+.+|.. +-.... ++++++.+|+.+..++
T Consensus 253 S~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-~FeGiP--SGIGKL~~Levf~aan-- 325 (1255)
T KOG0444|consen 253 SGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-TFEGIP--SGIGKLIQLEVFHAAN-- 325 (1255)
T ss_pred CcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-cccCCc--cchhhhhhhHHHHhhc--
Confidence 885 34444444455668888888887 4455553 35677888887776642 211111 2267788888888876
Q ss_pred CCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCccc
Q 035836 258 DDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYF 318 (380)
Q Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 318 (380)
+.++-+|++. ..+..|+.|.++. +.+..+|..+.-++.|+.|++..++++.--
T Consensus 326 N~LElVPEgl-------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 326 NKLELVPEGL-------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccccCchhh-------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 6777777766 6778888888876 677778888888888888888887777553
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=6.1e-18 Score=147.33 Aligned_cols=262 Identities=25% Similarity=0.324 Sum_probs=170.6
Q ss_pred ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836 8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA 87 (380)
Q Consensus 8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (380)
|+.+.+++++.....+....+..|..|.+++.. +...|.. ...... ++.++++.+. +..+ |.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~a--ig~l~~--------l~~l~vs~n~-ls~l------p~ 108 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAA--IGELEA--------LKSLNVSHNK-LSEL------PE 108 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHH--HHHHHH--------HHHhhcccch-Hhhc------cH
Confidence 344555554332222334445666777777665 5555553 344444 6666665532 2222 22
Q ss_pred cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836 88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG 167 (380)
Q Consensus 88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 167 (380)
.++..+ ++..++.++|. +.+++..++.+..|+.++..+ +.+.++|.++.++.++..+++.+ +.+..+|+..
T Consensus 109 -----~i~s~~-~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~ 179 (565)
T KOG0472|consen 109 -----QIGSLI-SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENH 179 (565)
T ss_pred -----HHhhhh-hhhhhhccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHH
Confidence 234445 47777777763 556666777777777777766 55666677777777777777776 5667777666
Q ss_pred ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836 168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 247 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (380)
..++.|++++... ..+..+|+.++.+.+|.-|++..+ .+..+|.+..|+.|++|+++.|. +...+.+. ...+++
T Consensus 180 i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~---~~~L~~ 253 (565)
T KOG0472|consen 180 IAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH---LKHLNS 253 (565)
T ss_pred HHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHH---hccccc
Confidence 6677777777654 346677777777888888888877 44556677778888888877653 44444433 567778
Q ss_pred cceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCC
Q 035836 248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCP 313 (380)
Q Consensus 248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 313 (380)
|..|++.. +.++++|++. ..+.+|++|++++ +.+..+|..+.++ .|+.|.+.|+|
T Consensus 254 l~vLDLRd--Nklke~Pde~-------clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 254 LLVLDLRD--NKLKEVPDEI-------CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ceeeeccc--cccccCchHH-------HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 88888876 7788888777 5777788888887 6788888788887 78888888744
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=3e-16 Score=149.82 Aligned_cols=224 Identities=21% Similarity=0.230 Sum_probs=147.0
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
....|.+|++++++.+ .+..+|.+++.+.+|+.++... +.+..+|..+....+|+.+.+.. +.+..+|+...+..+|
T Consensus 236 ~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSL 312 (1081)
T ss_pred cccccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCccccccee
Confidence 4566778999999997 4778888899999999999988 55577777777777777777766 5677777776667778
Q ss_pred CEEeccCCCCcccccccC--------------------------CCCCCccEEEeccCCCCC-CCCCCCCCCCceEEEec
Q 035836 174 TRLDIYDCERLEALPKGL--------------------------HNLTSLQELTIGKGVELP-SLEEDGLPTNLHSLEID 226 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l--------------------------~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 226 (380)
++|++..|. +..+|+.+ ..++.|+.|++.+|.... .+|....+.+|+.|+|+
T Consensus 313 ~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 313 RTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 888877642 23333211 112335555555553222 23445566777777777
Q ss_pred CCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCce
Q 035836 227 GNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTI 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 306 (380)
+|.. ...+... +.++..|++|+++| +.++.++... ..+..|++|...+ +.+..+| .+..++.|+.
T Consensus 392 yNrL-~~fpas~---~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 392 YNRL-NSFPASK---LRKLEELEELNLSG--NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKV 456 (1081)
T ss_pred cccc-ccCCHHH---HhchHHhHHHhccc--chhhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceE
Confidence 7642 2222211 55666777777777 6777777655 3566677776665 5667777 6667777888
Q ss_pred EeeecCCCCcccCC-CCCc-ccccEEEecCchh
Q 035836 307 LQLIDCPKLKYFPE-KGLP-SSLLELWIWDCPL 337 (380)
Q Consensus 307 L~l~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~ 337 (380)
+|++. ++++.+.. ...+ ++|++||++++++
T Consensus 457 lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Eeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 88764 77766543 3345 6788888887765
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=1.8e-13 Score=133.91 Aligned_cols=253 Identities=26% Similarity=0.328 Sum_probs=139.6
Q ss_pred ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836 8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA 87 (380)
Q Consensus 8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (380)
-..|+++++ .++.+|. ...++|+.|.+.++. ++.+|.. .+. |++|+++++ .++.+
T Consensus 203 ~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~--------Lk~LdLs~N-~LtsL-------- 257 (788)
T PRK15387 203 NAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPE--------LRTLEVSGN-QLTSL-------- 257 (788)
T ss_pred CcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCC--------CcEEEecCC-ccCcc--------
Confidence 456777775 5666665 234678888888765 6666532 234 888888775 44433
Q ss_pred cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836 88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG 167 (380)
Q Consensus 88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 167 (380)
+ .+|++|+.|++.+|. +..+|... .+|+.|++++ +.+..+|.. +++|+.|++++ +.+..+|..
T Consensus 258 -----P--~lp~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~-N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l- 320 (788)
T PRK15387 258 -----P--VLPPGLLELSIFSNP-LTHLPALP---SGLCKLWIFG-NQLTSLPVL---PPGLQELSVSD-NQLASLPAL- 320 (788)
T ss_pred -----c--CcccccceeeccCCc-hhhhhhch---hhcCEEECcC-Ccccccccc---ccccceeECCC-CccccCCCC-
Confidence 1 123367777777764 55555432 4566777777 345555542 45677777776 355555432
Q ss_pred ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836 168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 247 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (380)
..+|+.|++.+| .++.+|.. ..+|+.|++++|. ++.+|. .+++|+.|++++|.. ..++. ...+
T Consensus 321 --p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~--lp~~L~~L~Ls~N~L-~~LP~-------l~~~ 383 (788)
T PRK15387 321 --PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNRL-TSLPA-------LPSG 383 (788)
T ss_pred --cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCC--CCcccceehhhcccc-ccCcc-------cccc
Confidence 125666666654 33344431 2356677776653 333432 245666666665542 22211 1235
Q ss_pred cceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCccc
Q 035836 248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSS 326 (380)
Q Consensus 248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~ 326 (380)
|+.|++++ +.+..++. .+++|+.|++++ +.+..+|.. ..+|+.|++++ ++++.+|.. .-.++
T Consensus 384 L~~LdLs~--N~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~ 446 (788)
T PRK15387 384 LKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSS 446 (788)
T ss_pred cceEEecC--CcccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccC
Confidence 66666665 34444443 234566666666 455555532 23455666665 556666542 11345
Q ss_pred ccEEEecCch
Q 035836 327 LLELWIWDCP 336 (380)
Q Consensus 327 L~~L~l~~c~ 336 (380)
|+.|++++|+
T Consensus 447 L~~LdLs~N~ 456 (788)
T PRK15387 447 ETTVNLEGNP 456 (788)
T ss_pred CCeEECCCCC
Confidence 6666666665
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=7.1e-17 Score=140.76 Aligned_cols=263 Identities=26% Similarity=0.349 Sum_probs=195.3
Q ss_pred CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836 30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC 109 (380)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 109 (380)
-|.++.++++. +..+..+ ...+.. +..+.++.... ... |.++ +.+- .++.+++++|
T Consensus 46 ~l~~lils~N~-l~~l~~d--l~nL~~--------l~vl~~~~n~l-~~l------p~ai-----g~l~-~l~~l~vs~n 101 (565)
T KOG0472|consen 46 DLQKLILSHND-LEVLRED--LKNLAC--------LTVLNVHDNKL-SQL------PAAI-----GELE-ALKSLNVSHN 101 (565)
T ss_pred chhhhhhccCc-hhhccHh--hhcccc--------eeEEEeccchh-hhC------CHHH-----HHHH-HHHHhhcccc
Confidence 35556666665 4444433 344444 66677766432 222 3332 2333 5788888887
Q ss_pred CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccc
Q 035836 110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPK 189 (380)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 189 (380)
.+..+|+.++++.+|..++.++ +....++++++.+..+..++..+ +.+..+|+++..+.++..+++.++ .++..|+
T Consensus 102 -~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~ 177 (565)
T KOG0472|consen 102 -KLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPE 177 (565)
T ss_pred -hHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCH
Confidence 4778888888888999999888 66777788888888888888877 678888888888888888888874 4555555
Q ss_pred cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836 190 GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR 269 (380)
Q Consensus 190 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~ 269 (380)
..-+++.|++|+...+.-.+..+..+.+.+|+-|++..|..... +. |.+|..|.+|+++. +.++.++++..
T Consensus 178 ~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pe-----f~gcs~L~Elh~g~--N~i~~lpae~~- 248 (565)
T KOG0472|consen 178 NHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL-PE-----FPGCSLLKELHVGE--NQIEMLPAEHL- 248 (565)
T ss_pred HHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC-CC-----CCccHHHHHHHhcc--cHHHhhHHHHh-
Confidence 55458899999888774433344568889999999999764433 32 78999999999987 78888888763
Q ss_pred ccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836 270 LGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL 337 (380)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 337 (380)
..++++..|++.+ ++++++|..+.-+.+|++|++++ +.++.+|.. +.. .|++|.+.|+|.
T Consensus 249 -----~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 249 -----KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred -----cccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 4789999999999 89999999999999999999998 788888772 223 688888888873
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=3.7e-13 Score=131.76 Aligned_cols=237 Identities=30% Similarity=0.398 Sum_probs=172.1
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836 6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
++|+.|.+.++ .++.+|. .+++|++|+++++. ++.+|.. .+. |+.|+++++. +..+
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~s--------L~~L~Ls~N~-L~~L------ 277 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPG--------LLELSIFSNP-LTHL------ 277 (788)
T ss_pred cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccc--------cceeeccCCc-hhhh------
Confidence 36899999885 6777775 46899999999985 8877632 234 9999998863 4433
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE 165 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 165 (380)
+ .+|.+|+.|++++|. +..+|. .+++|++|++++| .+..+|.. ..+|+.|++++ +.+..+|.
T Consensus 278 -------p--~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~ 339 (788)
T PRK15387 278 -------P--ALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYN-NQLTSLPT 339 (788)
T ss_pred -------h--hchhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC---ccccccccccc-Cccccccc
Confidence 1 234479999999984 666665 3578999999984 66666642 34688888887 46676664
Q ss_pred CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836 166 GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245 (380)
Q Consensus 166 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 245 (380)
. ..+|+.|++++| .++.+|.. .++|+.|++++|. +..+|. .+.+|+.|++++|... .++. ..
T Consensus 340 l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~--l~~~L~~LdLs~N~Lt-~LP~-------l~ 401 (788)
T PRK15387 340 L---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNRLT-SLPV-------LP 401 (788)
T ss_pred c---ccccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCcc--cccccceEEecCCccc-CCCC-------cc
Confidence 2 247999999985 45566653 3578888888774 444553 3468999999998633 2221 23
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK 316 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 316 (380)
++|+.|++++ +.+..+|. .+.+|+.|++++ +.++.+|..+.++++|+.|+++++ .++
T Consensus 402 s~L~~LdLS~--N~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 402 SELKELMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred cCCCEEEccC--CcCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC-CCC
Confidence 5799999998 56777774 345789999998 789999999999999999999984 454
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=5.9e-15 Score=141.18 Aligned_cols=243 Identities=23% Similarity=0.298 Sum_probs=164.7
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS 107 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 107 (380)
-++|+.|..++|. +..+... ..-.+ |++++++.+. ++.+ |. .+...+ +|+.++..
T Consensus 218 g~~l~~L~a~~n~-l~~~~~~---p~p~n--------l~~~dis~n~-l~~l------p~-----wi~~~~-nle~l~~n 272 (1081)
T KOG0618|consen 218 GPSLTALYADHNP-LTTLDVH---PVPLN--------LQYLDISHNN-LSNL------PE-----WIGACA-NLEALNAN 272 (1081)
T ss_pred CcchheeeeccCc-ceeeccc---ccccc--------ceeeecchhh-hhcc------hH-----HHHhcc-cceEeccc
Confidence 4678888888777 4433221 12223 7778877542 2222 22 244555 68888888
Q ss_pred cCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCcc------------------
Q 035836 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP------------------ 169 (380)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~------------------ 169 (380)
+|. +..+|..+....+|+.|.+.. +.+..+|+....+++|++|++.. +.+.++|+.+..
T Consensus 273 ~N~-l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 273 HNR-LVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred chh-HHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 874 577777777777888887776 67777777777777888888876 455555542211
Q ss_pred --------CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEEEecCCCCcchhhhhhc
Q 035836 170 --------CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWG 239 (380)
Q Consensus 170 --------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~ 239 (380)
.+.|+.|.+.+|.......+.+.++.+|++|+|++| .++.+|.. ..+..|++|+|+||. ++.++..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t-- 425 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDT-- 425 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHH--
Confidence 234555556655554444456788899999999998 45666644 567899999999986 4434422
Q ss_pred cccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCC
Q 035836 240 RGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKL 315 (380)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l 315 (380)
+..++.|+.|...+ +.+..+|+ . ..++.|+.+|++. +.+..+.. .....++|++|+++|++++
T Consensus 426 --va~~~~L~tL~ahs--N~l~~fPe-~-------~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 426 --VANLGRLHTLRAHS--NQLLSFPE-L-------AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred --HHhhhhhHHHhhcC--Cceeechh-h-------hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 45788999999987 78888884 3 3889999999996 78876543 2222289999999997753
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=7e-13 Score=130.43 Aligned_cols=242 Identities=23% Similarity=0.376 Sum_probs=123.3
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836 7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (380)
+...|++.+. .++.+|.. .++.|+.|+++++. ++.+|.. .+ .+ |+.|+++++. ++.+ |
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~-l~---~n--------L~~L~Ls~N~-LtsL------P 236 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPEN-LQ---GN--------IKTLYANSNQ-LTSI------P 236 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChh-hc---cC--------CCEEECCCCc-cccC------C
Confidence 4556666654 45555532 34567777777665 6666643 11 24 7777776642 3333 2
Q ss_pred ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC
Q 035836 87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG 166 (380)
Q Consensus 87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 166 (380)
. .++.+|+.|++++|. +..+|..+. .+|+.|++++ +.+..+|..+. ++|+.|++++ +.+..+|..
T Consensus 237 ~--------~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~ 301 (754)
T PRK15370 237 A--------TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYD-NSIRTLPAH 301 (754)
T ss_pred h--------hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCC-CccccCccc
Confidence 1 122357777777664 445555442 4667777765 44555555442 4677777766 355555543
Q ss_pred CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836 167 GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS 246 (380)
Q Consensus 167 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (380)
+. ++|+.|++++|. +..+|..+ .++|+.|.+++|. ++.+|. ..+++|+.|++++|... .++.. + .+
T Consensus 302 lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~L~-~LP~~----l--p~ 367 (754)
T PRK15370 302 LP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENA-LTSLPA-SLPPELQVLDVSKNQIT-VLPET----L--PP 367 (754)
T ss_pred ch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCc-cccCCh-hhcCcccEEECCCCCCC-cCChh----h--cC
Confidence 32 256666666543 33344322 2456666666653 233332 12356666666665422 22111 1 24
Q ss_pred ccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhh----ccCCCCceEeeec
Q 035836 247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSI----VDLQNLTILQLID 311 (380)
Q Consensus 247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~ 311 (380)
+|+.|++++ +.+..+|... +..|+.|++++ +.+..+|..+ ..++++..|++.+
T Consensus 368 ~L~~LdLs~--N~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 368 TITTLDVSR--NALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred CcCEEECCC--CcCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC
Confidence 566666665 2444554422 23466666665 3555544322 2235555666655
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.1e-12 Score=129.16 Aligned_cols=247 Identities=21% Similarity=0.336 Sum_probs=175.6
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS 107 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 107 (380)
..+..+|++++.. ++.+|.. . .+. |+.|+++++ .++.+ +...++ +|++|+++
T Consensus 177 ~~~~~~L~L~~~~-LtsLP~~-I---p~~--------L~~L~Ls~N-~LtsL-------------P~~l~~-nL~~L~Ls 228 (754)
T PRK15370 177 KNNKTELRLKILG-LTTIPAC-I---PEQ--------ITTLILDNN-ELKSL-------------PENLQG-NIKTLYAN 228 (754)
T ss_pred ccCceEEEeCCCC-cCcCCcc-c---ccC--------CcEEEecCC-CCCcC-------------Chhhcc-CCCEEECC
Confidence 3567889998876 7777753 1 134 899999886 45544 222223 79999999
Q ss_pred cCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccc
Q 035836 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEAL 187 (380)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 187 (380)
+|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++ +.+..+|..+. ++|+.|++++| .++.+
T Consensus 229 ~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~L 298 (754)
T PRK15370 229 SNQ-LTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTL 298 (754)
T ss_pred CCc-cccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccC
Confidence 884 677776553 58999999985 5667887653 5899999987 67778876553 48999999986 45566
Q ss_pred cccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836 188 PKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED 267 (380)
Q Consensus 188 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 267 (380)
|..+ .++|+.|++++|. ++.+|. ..+++|+.|++++|... .++.. + .++|+.|++++ +.+..++..
T Consensus 299 P~~l--p~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~Lt-~LP~~----l--~~sL~~L~Ls~--N~L~~LP~~- 364 (754)
T PRK15370 299 PAHL--PSGITHLNVQSNS-LTALPE-TLPPGLKTLEAGENALT-SLPAS----L--PPELQVLDVSK--NQITVLPET- 364 (754)
T ss_pred cccc--hhhHHHHHhcCCc-cccCCc-cccccceeccccCCccc-cCChh----h--cCcccEEECCC--CCCCcCChh-
Confidence 6544 2478889999874 344443 23578999999998633 33321 2 36899999998 456677753
Q ss_pred ccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-----CCcccccEEEecCchhH
Q 035836 268 KRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-----GLPSSLLELWIWDCPLI 338 (380)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~~l 338 (380)
.+++|++|++++ +.+..+|..+. .+|+.|++++ ++++.+|.. ...+.+..|++.+++.-
T Consensus 365 --------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 --------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 347899999999 57888887554 3699999998 678887762 11357889999998753
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.2e-14 Score=126.79 Aligned_cols=282 Identities=18% Similarity=0.238 Sum_probs=172.4
Q ss_pred CCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCC
Q 035836 18 SLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNL 97 (380)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~ 97 (380)
+++++|. ..++.-.+++|..+. |+.+|.+ .|..+++ |+.|+++.+ .++.+. |+ .+.++
T Consensus 57 GL~eVP~-~LP~~tveirLdqN~-I~~iP~~-aF~~l~~--------LRrLdLS~N-~Is~I~-----p~-----AF~GL 114 (498)
T KOG4237|consen 57 GLTEVPA-NLPPETVEIRLDQNQ-ISSIPPG-AFKTLHR--------LRRLDLSKN-NISFIA-----PD-----AFKGL 114 (498)
T ss_pred CcccCcc-cCCCcceEEEeccCC-cccCChh-hccchhh--------hceeccccc-chhhcC-----hH-----hhhhh
Confidence 3444442 345667778887776 8888877 7777777 888888764 344331 11 34555
Q ss_pred CCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCE
Q 035836 98 PPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTR 175 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 175 (380)
+ +|.+|-++++..++.+|. .|+.+..|+.|.+..|...-.....+..++++..|.+.+ +.++.+.. .+..+..+++
T Consensus 115 ~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 115 A-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred H-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccch
Confidence 5 577777777666777765 566777777777766333222334466677777777776 55666665 3445667777
Q ss_pred EeccCCCCccc--c----------cccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE--EecCCCCcchhhhhhccc
Q 035836 176 LDIYDCERLEA--L----------PKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL--EIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 176 L~l~~~~~~~~--~----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L--~l~~~~~~~~~~~~~~~~ 241 (380)
+++..+..+.. + |-.++.+.......+.+.. +.........-.++.+ .+.+......+.+.-.
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c-- 269 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKC-- 269 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHH--
Confidence 77776553221 1 1011111111111111110 0111111111112222 2222233333333333
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
|.++++|++|++++ +.++.+.+.+ +.....++.|++.. ++++.+.. .|.++..|+.|++++ ++++.+.+
T Consensus 270 f~~L~~L~~lnlsn--N~i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~ 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN--NKITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP 339 (498)
T ss_pred HhhcccceEeccCC--Cccchhhhhh------hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEec
Confidence 78999999999998 7888877655 36778999999999 79998877 899999999999999 89999988
Q ss_pred CCC--cccccEEEecCch
Q 035836 321 KGL--PSSLLELWIWDCP 336 (380)
Q Consensus 321 ~~~--~~~L~~L~l~~c~ 336 (380)
+.+ ..+|.+|.+-.+|
T Consensus 340 ~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccccccceeeeeehccCc
Confidence 766 3478888775443
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=4.9e-15 Score=130.03 Aligned_cols=300 Identities=18% Similarity=0.264 Sum_probs=150.6
Q ss_pred CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836 30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC 109 (380)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 109 (380)
.|++|++.+|....+-+...+...+++ ++.|.+.+|.++++. ++. .++.+..+|+.|++..|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~Cpn--------IehL~l~gc~~iTd~--------s~~--sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPN--------IEHLALYGCKKITDS--------SLL--SLARYCRKLRHLNLHSC 200 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCc--------hhhhhhhcceeccHH--------HHH--HHHHhcchhhhhhhccc
Confidence 355566666655444443323334444 666666666554432 111 22333334666666665
Q ss_pred CChhhh--HhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccce--eccCCCccCCCCCEEeccCCCC
Q 035836 110 SKLESI--AERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLV--SFTEGGLPCAKLTRLDIYDCER 183 (380)
Q Consensus 110 ~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~ 183 (380)
..++.. ......+++|++|++++|..+.. +......+..++.+...+|.... .+......++.+.++++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 555422 22334566666666666555433 11112234444444444443221 1111122234455555445544
Q ss_pred ccccc--ccCCCCCCccEEEeccCCCCCCCCC---CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 184 LEALP--KGLHNLTSLQELTIGKGVELPSLEE---DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 184 ~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
+++.. ..-..+..|+.|..++|..++..+. ...+.+|+.+-+++|..+++...... -.+++.|+.+++.+ |.
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~-~~ 357 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEE-CG 357 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccc-cc
Confidence 44321 1113455666666666665554332 14556777777777765554443222 33566777777766 43
Q ss_pred CCcccccccccccCCCCCCCCcceEecccCCCccch-----hhhhccCCCCceEeeecCCCCcccCCCC--CcccccEEE
Q 035836 259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-----SSSIVDLQNLTILQLIDCPKLKYFPEKG--LPSSLLELW 331 (380)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~ 331 (380)
....-. +.+.-..++.|+.|.+++|..+++- .....++..|+.+++++|+.+++-..+. ..++|+.++
T Consensus 358 ~~~d~t-----L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 358 LITDGT-----LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred eehhhh-----HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 332211 1111246677777777777666544 2234455667778888877776633322 245777888
Q ss_pred ecCchhHHHHhhccCCCCCccccCcCeeEE
Q 035836 332 IWDCPLIEEKCRKDGGQYWNLLTHIPYVSI 361 (380)
Q Consensus 332 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (380)
+.+|..+........ .+|.|.+++
T Consensus 433 l~~~q~vtk~~i~~~------~~~lp~i~v 456 (483)
T KOG4341|consen 433 LIDCQDVTKEAISRF------ATHLPNIKV 456 (483)
T ss_pred eechhhhhhhhhHHH------HhhCcccee
Confidence 888877765433322 235555555
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=2.9e-14 Score=125.22 Aligned_cols=294 Identities=17% Similarity=0.218 Sum_probs=206.5
Q ss_pred CccEEEEecCCCCccccC---CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 7 SLEILEIWVCHSLTYIAG---VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
.|+.|.++||..+..-+. ...||+++.|.+.+|.++++......-..+.+ |+.|++..|..+++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~--------l~~l~L~~c~~iT~~---- 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRK--------LRHLNLHSCSSITDV---- 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcch--------hhhhhhcccchhHHH----
Confidence 589999999987655333 34599999999999998877654445567777 999999999988876
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhh--hHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEcccccc
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLES--IAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECEN 159 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~ 159 (380)
.+.+ -..++| +|++|++++|+.+.. +......+..++.+..++|...+. +-..-..+.-+..+++..|..
T Consensus 207 ----~Lk~-la~gC~-kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 207 ----SLKY-LAEGCR-KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred ----HHHH-HHHhhh-hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 1111 134677 699999999987763 444555677788887788766542 211122345566777777766
Q ss_pred ceeccC--CCccCCCCCEEeccCCCCccccc--ccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcc
Q 035836 160 LVSFTE--GGLPCAKLTRLDIYDCERLEALP--KGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIW 232 (380)
Q Consensus 160 l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~ 232 (380)
++.... ....+..|+.+..++|..+++.+ .-..+.++|+.|-+..|..++..- ....++.|+.+++.+|....
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 654321 11236789999999887766433 223578899999999998766532 22578899999999998766
Q ss_pred hhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836 233 KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID 311 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 311 (380)
+-..... ..+++.|+.|.+++ |..+++. ++.++...-.....|+.+.+++|+.+++-.- .+..+++|+++++.+
T Consensus 361 d~tL~sl--s~~C~~lr~lslsh-ce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 361 DGTLASL--SRNCPRLRVLSLSH-CELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhhHhhh--ccCCchhccCChhh-hhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 5532222 56899999999999 7776554 1222222224667899999999998876543 778899999999999
Q ss_pred CCCCcccCCCCC
Q 035836 312 CPKLKYFPEKGL 323 (380)
Q Consensus 312 c~~l~~~~~~~~ 323 (380)
|..++.-+...+
T Consensus 436 ~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 436 CQDVTKEAISRF 447 (483)
T ss_pred hhhhhhhhhHHH
Confidence 988877554334
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=6.1e-14 Score=108.89 Aligned_cols=155 Identities=23% Similarity=0.321 Sum_probs=105.8
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
++..|.+++| .+..+|+.+..+.+|+.|++.+ +.++.+|..+..++.|++|+++- +++..+|.+++.+|.|+.|+++
T Consensus 34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence 5777888887 4777888888888888888886 67778888888888888888865 6777888888888888888888
Q ss_pred CCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 180 DCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 180 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
+|... ..+|..|..++.|+.|+++++...-..+..+..++|+.|.+.++..+.-... ++.+..|++|++.+ +
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-----ig~lt~lrelhiqg--n 183 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-----IGDLTRLRELHIQG--N 183 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-----HHHHHHHHHHhccc--c
Confidence 76543 3566666667778888888774433223345556666666666554432222 33455555666655 3
Q ss_pred CCcccc
Q 035836 259 DMVSFP 264 (380)
Q Consensus 259 ~l~~~~ 264 (380)
.+..+|
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 444443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.6e-12 Score=117.72 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=16.3
Q ss_pred CCcceEecccCCCcc-----chhhhhccCCCCceEeeec
Q 035836 278 ASLTSLWIEDFPNLE-----RLSSSIVDLQNLTILQLID 311 (380)
Q Consensus 278 ~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~ 311 (380)
+.|++|++++| .++ .+...+..+++|+++++++
T Consensus 250 ~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 250 ISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred CCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 45666666553 332 2222344445566666655
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=4.2e-13 Score=104.26 Aligned_cols=159 Identities=24% Similarity=0.392 Sum_probs=117.9
Q ss_pred CCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEE
Q 035836 121 NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL 200 (380)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 200 (380)
++.+++.|.+++ +.+..+|+.+..+.+|+.|++++ +.++++|..+.++++|+.|+++. ..+..+|.+|+.++.|++|
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 467788888988 67777888999999999999998 78999999999999999999986 5677789999999999999
Q ss_pred EeccCCC-CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836 201 TIGKGVE-LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279 (380)
Q Consensus 201 ~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (380)
++.++.- ...+| |+ |-.+..|+-|.++. +.++.+|.+. ..+++
T Consensus 108 dltynnl~e~~lp--------------gn-------------ff~m~tlralyl~d--ndfe~lp~dv-------g~lt~ 151 (264)
T KOG0617|consen 108 DLTYNNLNENSLP--------------GN-------------FFYMTTLRALYLGD--NDFEILPPDV-------GKLTN 151 (264)
T ss_pred hccccccccccCC--------------cc-------------hhHHHHHHHHHhcC--CCcccCChhh-------hhhcc
Confidence 9987632 11222 11 22345556666655 5556666655 36667
Q ss_pred cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
|+.|.+.+ +.+-++|..+..+..|+.|.|.+ +.++-+|.
T Consensus 152 lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 152 LQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 77777776 56666777777777777777777 66666655
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=4.8e-11 Score=108.07 Aligned_cols=164 Identities=18% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCccEEEeccCCCCCC----CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836 195 TSLQELTIGKGVELPS----LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR 269 (380)
Q Consensus 195 ~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~ 269 (380)
++|+.|++++|..... +. ....+++|++|++++|...........+.+..+++|+.|++++ | .+..... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n-~i~~~~~--~~ 212 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-N-GLTDEGA--SA 212 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-C-ccChHHH--HH
Confidence 5666666666542211 00 1123456777777776533211111111134556888888887 4 2321111 11
Q ss_pred ccCCCCCCCCcceEecccCCCccch--hhhhc----cCCCCceEeeecCCCCcc-----cCC-CCCcccccEEEecCchh
Q 035836 270 LGTALPLPASLTSLWIEDFPNLERL--SSSIV----DLQNLTILQLIDCPKLKY-----FPE-KGLPSSLLELWIWDCPL 337 (380)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~----~~~~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~c~~ 337 (380)
+...+..+++|++|++++| .+... ..... ..+.|++|++.+| .+++ +.. ....++|+++++++|.-
T Consensus 213 l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 213 LAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 1112246678999999885 45432 11122 2478999999986 4432 111 01125799999998765
Q ss_pred HHHHhhccCCCCCccc-cCcCeeEECcee
Q 035836 338 IEEKCRKDGGQYWNLL-THIPYVSIDYKW 365 (380)
Q Consensus 338 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 365 (380)
-.+.+.. ....+... .++..+.|++++
T Consensus 291 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 291 GEEGAQL-LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence 5442211 11122222 456666666544
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=8.6e-11 Score=117.67 Aligned_cols=266 Identities=24% Similarity=0.214 Sum_probs=148.5
Q ss_pred ccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCC-cccccccCCCCccccccccCCCCCC
Q 035836 22 IAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRS-LTCIFSKNELPATLESLEVGNLPPS 100 (380)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~ 100 (380)
++........++..+.+.. +..++.. ..++. |.+|-+.+... +... +.. .+..+| .
T Consensus 516 ~~~~~~~~~~rr~s~~~~~-~~~~~~~---~~~~~--------L~tLll~~n~~~l~~i------s~~----ff~~m~-~ 572 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNK-IEHIAGS---SENPK--------LRTLLLQRNSDWLLEI------SGE----FFRSLP-L 572 (889)
T ss_pred cccccchhheeEEEEeccc-hhhccCC---CCCCc--------cceEEEeecchhhhhc------CHH----HHhhCc-c
Confidence 4444445667777776655 4444432 33334 77777766432 2211 000 144566 5
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD 180 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 180 (380)
|+.|++++|..+..+|..++.+-+|++|++++ ..+..+|.++.++..|.+|++..+..+..++.....+++|++|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 88888888888888888888888888888888 67778888888888888888887666555544444478888888765
Q ss_pred CC-Ccc-cccccCCCCCCccEEEeccCCCCCCCCCCCCCCCce----EEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836 181 CE-RLE-ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLH----SLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS 254 (380)
Q Consensus 181 ~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 254 (380)
.. ..+ ..-..+..+.+|+.+....... ..+.....+..|. .+.+.++...+.... +..+.+|+.|.+.
T Consensus 652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~-----~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 652 SALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS-----LGSLGNLEELSIL 725 (889)
T ss_pred cccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecc-----cccccCcceEEEE
Confidence 33 111 1112234555666665544322 1111111222222 223222322222222 5567788888888
Q ss_pred cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
+ |...+.......... ....++++..+.+.+|...+.+. ...-.|+|++|.+.+|+.+.++.+
T Consensus 726 ~-~~~~e~~~~~~~~~~-~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 726 D-CGISEIVIEWEESLI-VLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred c-CCCchhhcccccccc-hhhhHHHHHHHHhhccccccccc-hhhccCcccEEEEecccccccCCC
Confidence 7 555432221100000 00013345555555555554432 233447788888888887777554
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=4.5e-10 Score=112.62 Aligned_cols=254 Identities=21% Similarity=0.214 Sum_probs=154.0
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEeecCCcC-ccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836 7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDN-IRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
..+.+.+-++ ....++....++.|++|-+.+... +..++.+ +|..++. |+.|++++|..+..+
T Consensus 524 ~~rr~s~~~~-~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~-ff~~m~~--------LrVLDLs~~~~l~~L------ 587 (889)
T KOG4658|consen 524 SVRRMSLMNN-KIEHIAGSSENPKLRTLLLQRNSDWLLEISGE-FFRSLPL--------LRVLDLSGNSSLSKL------ 587 (889)
T ss_pred heeEEEEecc-chhhccCCCCCCccceEEEeecchhhhhcCHH-HHhhCcc--------eEEEECCCCCccCcC------
Confidence 3455555442 444555556678899999988763 6666665 6888888 999999998776655
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceecc-
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFT- 164 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~- 164 (380)
|..+ +.+- +|++|+++++ .+..+|..+.++.+|.+|++..+..+..+|.....+.+|++|.+.... .....
T Consensus 588 P~~I-----~~Li-~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~ 659 (889)
T KOG4658|consen 588 PSSI-----GELV-HLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKL 659 (889)
T ss_pred ChHH-----hhhh-hhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchh
Confidence 5544 4445 7999999997 488999999999999999999877777776666669999999887632 11111
Q ss_pred --CCCccCCCCCEEeccCCCCcccccccCCCCCCcc----EEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhh
Q 035836 165 --EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQ----ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEW 238 (380)
Q Consensus 165 --~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (380)
.....+.+|+.+....... .+...+..++.|. .+.+..+...+.......+.+|+.|.+.+|........ +
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-~ 736 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-W 736 (889)
T ss_pred hHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc-c
Confidence 1122234444444432211 1111122222322 33333333333444556777888888888776432211 1
Q ss_pred ccc--cC-CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh
Q 035836 239 GRG--FH-RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS 296 (380)
Q Consensus 239 ~~~--~~-~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 296 (380)
... .. .++++..+.+.+ |.......... ++++|+.|++..|..++....
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~~--------f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILN-CHMLRDLTWLL--------FAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccchhhhHHHHHHHHhhc-cccccccchhh--------ccCcccEEEEecccccccCCC
Confidence 000 11 144555556655 55555544332 667788888887776665533
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=3e-11 Score=105.83 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=149.6
Q ss_pred CCCCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcc-cccccCCCCCcEEEccccccceeccCCCc-cCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKIL-PSGLHNLRQLQKIEIWECENLVSFTEGGL-PCA 171 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~ 171 (380)
..+|.+-.++++..|. ++.+| .+|+.+++|+.|+++.| .++.+ |..+..++++..|.+.+.++++.++.+.+ .+.
T Consensus 63 ~~LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred ccCCCcceEEEeccCC-cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 4455578899999885 66554 57889999999999984 44444 56677888988888888788999887543 466
Q ss_pred CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhc--------ccc
Q 035836 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWG--------RGF 242 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~ 242 (380)
+++.|.+..|...-...+.++.++++..|.+.++.....-. .......++++++..++.+-.....|. -.+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 77777776654433333567788888888888774322221 234566777777777663222111110 001
Q ss_pred CCCCccceeeee------------------------cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-h
Q 035836 243 HRFSSLRRLAIS------------------------GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-S 297 (380)
Q Consensus 243 ~~~~~L~~L~l~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 297 (380)
+++.......+. +.|.....-|.. .+..+++|+.|++++ +.++.+.. +
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~------cf~~L~~L~~lnlsn-N~i~~i~~~a 293 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK------CFKKLPNLRKLNLSN-NKITRIEDGA 293 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH------HHhhcccceEeccCC-Cccchhhhhh
Confidence 111111111111 101111111111 134567777777777 66666644 6
Q ss_pred hccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceee
Q 035836 298 IVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWV 366 (380)
Q Consensus 298 ~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (380)
|.....++.|.+.. +++..+..+.+ .+.|+.|+++++..-+ .....|+....+..+++-.+++
T Consensus 294 Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~-----~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITT-----VAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEE-----EecccccccceeeeeehccCcc
Confidence 77777777777777 66666655444 4567777777643322 1222344444455555544443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.6e-10 Score=97.77 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=135.3
Q ss_pred CccEEEEecCCChhhhH--hhccCCCCccEEeecCCCCCCcc---cccccCCCCCcEEEccccccceeccCCC--ccCCC
Q 035836 100 SLRSLYVSHCSKLESIA--ERLDNNTSLETIDISNCESLKIL---PSGLHNLRQLQKIEIWECENLVSFTEGG--LPCAK 172 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~~ 172 (380)
+|+++.+.++. +...+ .....|++++.|+++. +.+..+ -..+..+|+|+.|+++. +.+....... ..+++
T Consensus 122 kL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 122 KLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSH 198 (505)
T ss_pred hhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhh
Confidence 47788887764 44333 3556788888888888 444332 22345688888888887 4444332211 23568
Q ss_pred CCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCC-CCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836 173 LTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPS-LEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR 250 (380)
Q Consensus 173 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 250 (380)
|+.|.++.|-.. .++-.....+|+|+.|++..|..... ......+..|++|+|++|..+...-... .+.++.|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~---~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK---VGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc---cccccchhh
Confidence 889988887543 23333445688999999998853222 2233567889999999988765442211 667899999
Q ss_pred eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCc
Q 035836 251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLK 316 (380)
Q Consensus 251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~ 316 (380)
|.++. .++.++..-.+.-......+++|++|.+.. +.+..|+. .+..+++|+.|.+.. +.+.
T Consensus 276 Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~-n~ln 339 (505)
T KOG3207|consen 276 LNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL-NYLN 339 (505)
T ss_pred hhccc--cCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc-cccc
Confidence 99987 455554432222223345788999999998 78877776 677778888888775 4443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=91.14 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=26.4
Q ss_pred CccEEEEecCCCh-hhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccc
Q 035836 100 SLRSLYVSHCSKL-ESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWE 156 (380)
Q Consensus 100 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 156 (380)
.|+.|.++.|..- +.+...+..+|+|+.|.+.+|..+.........+..|+.|++++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 4666666665422 23444444556666666665432221111112244555555555
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=5.8e-07 Score=81.66 Aligned_cols=94 Identities=27% Similarity=0.527 Sum_probs=60.7
Q ss_pred ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCcc
Q 035836 119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQ 198 (380)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 198 (380)
+..+.+++.|++++| .+..+|. + ..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688899999986 6777772 2 3468889988888887777544 24788888888766665554 466
Q ss_pred EEEeccCCCCCCCCCCCCCCCceEEEecC
Q 035836 199 ELTIGKGVELPSLEEDGLPTNLHSLEIDG 227 (380)
Q Consensus 199 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (380)
.|.+..+.. ..+ ...+++|+.|.+.+
T Consensus 116 ~L~L~~n~~-~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSAT-DSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCCC-ccc--ccCcchHhheeccc
Confidence 666653221 111 12455677777654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=4.6e-08 Score=83.32 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL 251 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 251 (380)
.|+++++++| .++.+-+++.-.|.++.|+++.|.. ..+.....+++|..|++++|....... | -.++-|++.|
T Consensus 285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N~Ls~~~G--w---h~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGNLLAECVG--W---HLKLGNIKTL 357 (490)
T ss_pred hhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccchhHhhhh--h---HhhhcCEeee
Confidence 4556666653 3333334444455666666666532 223334555666666666654222111 2 2245567777
Q ss_pred eeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCcccC
Q 035836 252 AISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLKYFP 319 (380)
Q Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~ 319 (380)
.+++ +.++++..-. .+-+|.+|++++ +.++.+.. .+.++|.|+++.+.++| +..++
T Consensus 358 ~La~--N~iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 358 KLAQ--NKIETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ehhh--hhHhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 7776 4555555432 556777778777 67766654 77788888888888743 44433
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.8e-09 Score=88.13 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=110.0
Q ss_pred CCccEEeecCCCCCC--cccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc--ccCCCCCCcc
Q 035836 123 TSLETIDISNCESLK--ILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP--KGLHNLTSLQ 198 (380)
Q Consensus 123 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~ 198 (380)
..|++|+++. ..++ ++...+..+.+|+-|.+.+..--..+...+..-..|+.+++++|.+++... -.+.+++.|.
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3577777776 3322 222234456666666666532112222233344578888888877776532 1346788888
Q ss_pred EEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhh-hhccccCCCCccceeeeecCCCCCcccccccccccCCC
Q 035836 199 ELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTI-EWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTAL 274 (380)
Q Consensus 199 ~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~ 274 (380)
.|++++|...+..- ..+....|+.|+++|+...-.... +.. ...+|+|.+|+++. |..++.--. +.+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL--~~rcp~l~~LDLSD-~v~l~~~~~------~~~ 334 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL--VRRCPNLVHLDLSD-SVMLKNDCF------QEF 334 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH--HHhCCceeeecccc-ccccCchHH------HHH
Confidence 88888886544331 124456888888888864322221 111 35789999999998 666554211 112
Q ss_pred CCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 275 PLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 275 ~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
..++-|++|.++.|..+..-.. .+...|+|.+|++.+|-
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 4677899999999877653222 67778899999999873
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=6.1e-09 Score=95.72 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=63.3
Q ss_pred cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCC
Q 035836 102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDC 181 (380)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 181 (380)
...+++.|. ...+|..+..+..|+.+.++. +.+..+|..+.++..|+.++++. +.++.+|..++.| -|+.+.+++
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-
Confidence 344555553 556666666666677777766 55666666666777777777766 5666777666655 366666664
Q ss_pred CCcccccccCCCCCCccEEEeccCC
Q 035836 182 ERLEALPKGLHNLTSLQELTIGKGV 206 (380)
Q Consensus 182 ~~~~~~~~~l~~~~~L~~L~l~~~~ 206 (380)
..++.+|..++....|..|+.+.|.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhh
Confidence 4566666666656666666666553
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=2.3e-07 Score=86.66 Aligned_cols=170 Identities=23% Similarity=0.331 Sum_probs=95.4
Q ss_pred CCCccEEeecCCCCCCcccccccCCC-CCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEE
Q 035836 122 NTSLETIDISNCESLKILPSGLHNLR-QLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL 200 (380)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 200 (380)
.+.+..|.+.+ +.+..++....... +|+.|++++ +.+..++.....++.|+.|++++| .+.++|......++|+.|
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 45666666665 45555555444443 666666666 455565545555666666666653 334444433356666666
Q ss_pred EeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836 201 TIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279 (380)
Q Consensus 201 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (380)
+++++. +..++.. ..+..|+++.++++........ +..+.++..+.+.+ +.+..++... ..++.
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~--n~~~~~~~~~-------~~l~~ 256 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSN--NKLEDLPESI-------GNLSN 256 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchh-----hhhcccccccccCC--ceeeeccchh-------ccccc
Confidence 666653 3333333 3445567777766653333332 44555566665544 3444433322 35566
Q ss_pred cceEecccCCCccchhhhhccCCCCceEeeec
Q 035836 280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLID 311 (380)
Q Consensus 280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 311 (380)
++.|++++ +.+..++. +....+++.|++++
T Consensus 257 l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 257 LETLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred cceecccc-cccccccc-ccccCccCEEeccC
Confidence 77777776 56666664 66667777777766
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=6.2e-08 Score=82.53 Aligned_cols=100 Identities=23% Similarity=0.313 Sum_probs=65.4
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
.|+++++++| .++.+-++..-.|+++.|+++. +.+..+. .+..+++|+.|++++ +.+..+..--..+.++++|.++
T Consensus 285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~-N~i~~v~-nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQ-NRIRTVQ-NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhcccccc-chhhhhhhhhhccceeEEeccc-cceeeeh-hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence 4888899887 4777777888888999999988 4444433 366788888888887 4555443322345677777777
Q ss_pred CCCCcccccccCCCCCCccEEEeccC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 205 (380)
+|. +.++ .+++.+.+|..|++.+|
T Consensus 361 ~N~-iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 361 QNK-IETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhh-Hhhh-hhhHhhhhheecccccc
Confidence 642 2222 24455555666666655
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7.7e-09 Score=87.80 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=12.0
Q ss_pred CCCceEeecCCcCccccccccceecCCC
Q 035836 29 PSLKQLRISDCDNIRTLTVEEGIQSSSS 56 (380)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 56 (380)
.+|+.|++++|..+......-++.++..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhh
Confidence 4444444444444443333333444444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=3.1e-07 Score=74.26 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=11.2
Q ss_pred CCCcceEecccCCCccchhh--hhccCCCCceEeeecC
Q 035836 277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDC 312 (380)
Q Consensus 277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c 312 (380)
+++|++|++++ +.+.++.. .+..+++|+.|++.++
T Consensus 87 lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 87 LPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCC
Confidence 34555555554 44444332 3445555555555553
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=4.6e-06 Score=75.88 Aligned_cols=166 Identities=23% Similarity=0.373 Sum_probs=110.6
Q ss_pred ccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceE
Q 035836 143 LHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHS 222 (380)
Q Consensus 143 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 222 (380)
+..+.+++.|++++| .+..+|. . .++|++|.+.+|..+..+|..+ .++|+.|.+++|..+..+ +.+|+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--L-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--C-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence 445789999999997 7888872 2 2479999999999988888755 358999999998665543 567999
Q ss_pred EEecCCCCcchhhhhhccccCCC-CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccC
Q 035836 223 LEIDGNMEIWKSTIEWGRGFHRF-SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDL 301 (380)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 301 (380)
|++.++.. .. +..+ ++|+.|.+.+ +.......... ..+++|++|++++|..+. +|..+.
T Consensus 117 L~L~~n~~-~~--------L~~LPssLk~L~I~~-~n~~~~~~lp~-------~LPsSLk~L~Is~c~~i~-LP~~LP-- 176 (426)
T PRK15386 117 LEIKGSAT-DS--------IKNVPNGLTSLSINS-YNPENQARIDN-------LISPSLKTLSLTGCSNII-LPEKLP-- 176 (426)
T ss_pred EEeCCCCC-cc--------cccCcchHhheeccc-ccccccccccc-------ccCCcccEEEecCCCccc-Cccccc--
Confidence 99875432 11 2223 4688888864 22111111111 366899999999986543 443333
Q ss_pred CCCceEeeecCCCC-cccCCCCCcccccEEEecCchhHHH
Q 035836 302 QNLTILQLIDCPKL-KYFPEKGLPSSLLELWIWDCPLIEE 340 (380)
Q Consensus 302 ~~L~~L~l~~c~~l-~~~~~~~~~~~L~~L~l~~c~~l~~ 340 (380)
.+|+.|.++.+... ..++...+++++ .|++.+|-++..
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 68999999764211 123444567778 888888865544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=5.5e-07 Score=84.12 Aligned_cols=174 Identities=22% Similarity=0.266 Sum_probs=122.2
Q ss_pred CCCCCCccEEEEecCCChhhhHhhccCCC-CccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESIAERLDNNT-SLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
..+. .++.|.+.++ .+..++....... +|+.|++++ +.+..+|..+..+++|+.|++++ +.+.+++......+.|
T Consensus 113 ~~~~-~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L 188 (394)
T COG4886 113 LELT-NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNL 188 (394)
T ss_pred hccc-ceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhh
Confidence 3444 5888888876 4777777777674 899999988 67777766677888999999988 5777777765556788
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI 253 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 253 (380)
+.++++++ .+..+|..+.....|+.+.+.++..............+..+.+.++........ +..+++++.|++
T Consensus 189 ~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-----~~~l~~l~~L~~ 262 (394)
T COG4886 189 NNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-----IGNLSNLETLDL 262 (394)
T ss_pred hheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-----hccccccceecc
Confidence 88988874 555666554455568888888875444444455666777777666543321111 567788889998
Q ss_pred ecCCCCCcccccccccccCCCCCCCCcceEecccC
Q 035836 254 SGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 288 (380)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 288 (380)
++ +.+.+++. . ....++++|++++.
T Consensus 263 s~--n~i~~i~~-~-------~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SN--NQISSISS-L-------GSLTNLRELDLSGN 287 (394)
T ss_pred cc--cccccccc-c-------cccCccCEEeccCc
Confidence 87 67777766 3 36778899988873
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=1.3e-06 Score=70.68 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCCCceEEEecCCCCcchhhhhhccccC-CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836 216 LPTNLHSLEIDGNMEIWKSTIEWGRGFH-RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL 294 (380)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 294 (380)
.+.++++|+|+++....... ++ .+.+|+.|++++ +.+..+..- ..++.|+.|++++ +.++++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~--N~I~~l~~l--------~~L~~L~~L~L~~-N~I~~i 79 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSN--NQITKLEGL--------PGLPRLKTLDLSN-NRISSI 79 (175)
T ss_dssp -------------------S--------TT-TT--EEE-TT--S--S--TT------------TT--EEE--S-S---S-
T ss_pred cccccccccccccccccccc------hhhhhcCCCEEECCC--CCCccccCc--------cChhhhhhcccCC-CCCCcc
Confidence 34466777777765332211 33 467888888887 567766642 4778999999998 788888
Q ss_pred hhhh-ccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCchhH
Q 035836 295 SSSI-VDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPLI 338 (380)
Q Consensus 295 ~~~~-~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~l 338 (380)
...+ ..+|+|++|++++ ++++++.... -.++|+.|++.++|--
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6544 5799999999998 7888876621 2578999999998853
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=1.5e-07 Score=81.80 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=52.1
Q ss_pred CCCCCEEeccCCCC----cccccccCCCCCCccEEEeccCCCCCCC-----CCCCCCCCceEEEecCCCCcchhhhhhcc
Q 035836 170 CAKLTRLDIYDCER----LEALPKGLHNLTSLQELTIGKGVELPSL-----EEDGLPTNLHSLEIDGNMEIWKSTIEWGR 240 (380)
Q Consensus 170 ~~~L~~L~l~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 240 (380)
++.|+.+.+..|.. .+.+..++.++++|++|++.+|...... .....+++|+.+++++|..-..-...+..
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 44555655554322 1122234555666666666665322211 11234456666666666433221111111
Q ss_pred c-cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccC
Q 035836 241 G-FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 288 (380)
Q Consensus 241 ~-~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 288 (380)
+ -...|+|+.|.+.+ +.++.-... .+.....-.+.|+.|.+++|
T Consensus 264 al~~~~p~L~vl~l~g--NeIt~da~~--~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAG--NEITRDAAL--ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHhccCCCCceeccCc--chhHHHHHH--HHHHHHhcchhhHHhcCCcc
Confidence 1 23457777777777 222211100 00111123567777777774
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=6.8e-07 Score=77.80 Aligned_cols=231 Identities=17% Similarity=0.114 Sum_probs=111.8
Q ss_pred CccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCC----ccc-------ccccCCCCCcEEEccccccceecc
Q 035836 100 SLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLK----ILP-------SGLHNLRQLQKIEIWECENLVSFT 164 (380)
Q Consensus 100 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~~l~~l~ 164 (380)
.++++++++|+.-. .+-..+.+.++|+.-++++ -..+ .+| ..+..++.|++++++++..-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 58888888875322 3444556667777777765 2222 122 223345677777777643222222
Q ss_pred C----CCccCCCCCEEeccCCCCcc----c---------ccccCCCCCCccEEEeccCCCCCCCC-----CCCCCCCceE
Q 035836 165 E----GGLPCAKLTRLDIYDCERLE----A---------LPKGLHNLTSLQELTIGKGVELPSLE-----EDGLPTNLHS 222 (380)
Q Consensus 165 ~----~~~~~~~L~~L~l~~~~~~~----~---------~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~ 222 (380)
. .+.++..|++|.+.+|-.-. . .......-+.|+++....|.....-. .....+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2 22336667777776542211 0 11122334566666666553222110 1133456777
Q ss_pred EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccc-----hhh-
Q 035836 223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER-----LSS- 296 (380)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~- 296 (380)
+.+..|.....-.......+.++++|+.|++.. +.++.- ....+..+++..++|+.|++++|. ++. +..
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~e--gs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a 264 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLE--GSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA 264 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhH--HHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence 776666543321111112256677777777765 222111 111223334555667777777763 321 111
Q ss_pred hhccCCCCceEeeecCCCCcccCCC------CCcccccEEEecCchh
Q 035836 297 SIVDLQNLTILQLIDCPKLKYFPEK------GLPSSLLELWIWDCPL 337 (380)
Q Consensus 297 ~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~ 337 (380)
.-...|+|+.|.+.+ +.++.-... .--+.|..|++++|..
T Consensus 265 l~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 223456777777777 334331110 0134566677766543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=7.7e-06 Score=80.51 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=65.5
Q ss_pred ccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEecc
Q 035836 125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGK 204 (380)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 204 (380)
++.|+++++.....+|..+..+++|+.|+++++.....+|..+..+++|+.|++++|.....+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667766555556666666777777777776433335555566666777777777666666666677777777777777
Q ss_pred CCCCCCCCCC--CCCCCceEEEecCCCC
Q 035836 205 GVELPSLEED--GLPTNLHSLEIDGNME 230 (380)
Q Consensus 205 ~~~~~~~~~~--~~~~~L~~L~l~~~~~ 230 (380)
|.....+|.. ....++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 6544344432 1223455666776653
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.09 E-value=1.5e-07 Score=86.72 Aligned_cols=154 Identities=27% Similarity=0.350 Sum_probs=115.3
Q ss_pred CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLT 174 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 174 (380)
..|- .|+.+.++.|. +..+|..+.++..|.+|+++. +.+..+|..++.++ |+.|-+++ ++++.+|+.+.-.+.|.
T Consensus 95 ~~f~-~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 95 CAFV-SLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA 169 (722)
T ss_pred HHHH-HHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH
Confidence 3444 58888888874 778999999999999999998 78888898888877 88998888 78999999888778899
Q ss_pred EEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836 175 RLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS 254 (380)
Q Consensus 175 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 254 (380)
.++.+.| .+..+|..+.++.+|+.|.+..+.... +|..-..-.|..||++.|........ |..++.|++|-+.
T Consensus 170 ~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis~iPv~-----fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 170 HLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKISYLPVD-----FRKMRHLQVLQLE 242 (722)
T ss_pred Hhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCceeecchh-----hhhhhhheeeeec
Confidence 9998875 455677778888899999988874433 33322255677788877654443333 5577778888777
Q ss_pred cCCCCCcc
Q 035836 255 GCDDDMVS 262 (380)
Q Consensus 255 ~~~~~l~~ 262 (380)
+ +-+.+
T Consensus 243 n--NPLqS 248 (722)
T KOG0532|consen 243 N--NPLQS 248 (722)
T ss_pred c--CCCCC
Confidence 5 44443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=5.3e-06 Score=54.85 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=29.9
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC 312 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 312 (380)
|+|++|++++ +.+..++... +..+++|++|++++ +.++.++. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~--n~l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN--NKLTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS--STESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCC--CCCCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555 2444554322 23455555555554 45555544 5555555555555553
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=9.7e-06 Score=53.56 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=50.3
Q ss_pred CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCC
Q 035836 6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCR 74 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 74 (380)
|+|++|++++| .+..++. +..+++|++|+++++. +..++.+ .|..++. |++|+++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~-~f~~l~~--------L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD-AFSNLPN--------LRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETT-TTTTSTT--------ESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHH-HHcCCCC--------CCEEeCcCCc
Confidence 68999999997 7778876 4568999999999887 8999887 7889888 9999999874
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.84 E-value=4.3e-05 Score=75.32 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=82.1
Q ss_pred CcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecC
Q 035836 149 LQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDG 227 (380)
Q Consensus 149 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 227 (380)
++.|++.++.--..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888888544346677777889999999999877778888899999999999999866555654 47789999999999
Q ss_pred CCCcchhhhhhccccCCCCccceeeeecCCCCCccc
Q 035836 228 NMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF 263 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~ 263 (380)
|.....++... .....++..+++.+ +..+...
T Consensus 500 N~l~g~iP~~l---~~~~~~~~~l~~~~-N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAAL---GGRLLHRASFNFTD-NAGLCGI 531 (623)
T ss_pred CcccccCChHH---hhccccCceEEecC-CccccCC
Confidence 87554444322 12234667788887 5555443
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=1.9e-06 Score=82.69 Aligned_cols=136 Identities=26% Similarity=0.390 Sum_probs=69.7
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC-CCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC-RSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
++.|+.|.+.+|..+...........+++ |++|+++++ ...... +..... .....+ +|+.|++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~--------L~~L~l~~~~~~~~~~------~~~~~~-~~~~~~-~L~~l~l 250 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPN--------LEELDLSGCCLLITLS------PLLLLL-LLSICR-KLKSLDL 250 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCch--------hheecccCcccccccc------hhHhhh-hhhhcC-CcCccch
Confidence 67777777777766665332224556666 777777763 221111 000000 111223 5777777
Q ss_pred ecCCChhh--hHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEEecc
Q 035836 107 SHCSKLES--IAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 107 ~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~ 179 (380)
+++..+.. +......+++|++|.+.+|..++. +......+++|+.|+++.|..+.. +......|++++.+.+.
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 77654442 222223477777777666654332 223344577788888777665522 11122235555555443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=9.6e-06 Score=77.81 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCceEeeecCCCCcccCCCCC---cccccEEEecCchhHHHHh
Q 035836 302 QNLTILQLIDCPKLKYFPEKGL---PSSLLELWIWDCPLIEEKC 342 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~~~ 342 (380)
.+++.|.+..|..++...-... ...++.+++.+|+.+....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3367777777766655322111 3456667777777666543
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=9.7e-06 Score=76.09 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=32.5
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|+.|++++|. +..+...+..+++|++|++++ +.+..+. ++..++.|+.|++.+ +.+..+. .+..++.|+.++++
T Consensus 96 ~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccc-hhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheecc-Ccchhcc-CCccchhhhcccCC
Confidence 35555555542 333322244455555555555 3333332 233344455555554 2333322 12223445555555
Q ss_pred C
Q 035836 180 D 180 (380)
Q Consensus 180 ~ 180 (380)
+
T Consensus 171 ~ 171 (414)
T KOG0531|consen 171 Y 171 (414)
T ss_pred c
Confidence 4
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00015 Score=44.02 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccC
Q 035836 278 ASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP 319 (380)
Q Consensus 278 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 319 (380)
++|++|++++ +.+++++..+.++++|+.|++++| .+++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4678888888 688888876888888888888884 566654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0004 Score=59.75 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=26.8
Q ss_pred CccEEEEecCCC--hhhhHhhccCCCCccEEeecCCCCCCcccccc-cCCCCCcEEEccc
Q 035836 100 SLRSLYVSHCSK--LESIAERLDNNTSLETIDISNCESLKILPSGL-HNLRQLQKIEIWE 156 (380)
Q Consensus 100 ~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~ 156 (380)
.++++++.+|.. ..++-..+..+|.|+.|+++.| .+......+ -...+|+++.+.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcC
Confidence 466666666531 1234444556666666666653 222111111 1234566665554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00028 Score=69.82 Aligned_cols=104 Identities=26% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCCEEeccCCCCcccc-cccC-CCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836 171 AKLTRLDIYDCERLEAL-PKGL-HNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS 246 (380)
Q Consensus 171 ~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (380)
.+|++|++++...+..- +..+ ..+|+|+.|.+.+-..... +. ....+++|..||+++++. +.. ++ ++.++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl---~G--IS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL---SG--ISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc---HH--Hhccc
Confidence 47888888774333211 1112 3467777777776432211 11 224566777777766542 222 12 55666
Q ss_pred ccceeeeecCCCCCcccccccccccCCCCCCCCcceEeccc
Q 035836 247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 287 (380)
Q Consensus 247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 287 (380)
+|+.|.+.+ -.++....-. .+..+++|+.||++.
T Consensus 196 nLq~L~mrn--Le~e~~~~l~-----~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 196 NLQVLSMRN--LEFESYQDLI-----DLFNLKKLRVLDISR 229 (699)
T ss_pred cHHHHhccC--CCCCchhhHH-----HHhcccCCCeeeccc
Confidence 666666654 2222211100 012556666666665
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00058 Score=41.44 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=25.6
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKIL 139 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 139 (380)
+|++|++++| .+..+|..+.++++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 5788888777 46677777778888888888874 44443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.0016 Score=52.98 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=74.3
Q ss_pred CCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-
Q 035836 218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS- 296 (380)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 296 (380)
.....++|.+|....... |.+++.|..|.+.. +.+..+..... ..+++|+.|.+.+ +++..+..
T Consensus 42 d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~n--NrIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNN--NRITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred cccceecccccchhhccc------CCCccccceEEecC--Ccceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence 455666676665332221 66777888888876 77777776553 5778899999988 67777755
Q ss_pred -hhccCCCCceEeeecCCCCcccCCC-----CCcccccEEEecCchhHHHH
Q 035836 297 -SIVDLQNLTILQLIDCPKLKYFPEK-----GLPSSLLELWIWDCPLIEEK 341 (380)
Q Consensus 297 -~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~~l~~~ 341 (380)
.+..||.|++|.+-+ +.++..... ...++|+.||...-..-+..
T Consensus 107 ~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~ 156 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE 156 (233)
T ss_pred chhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence 678899999999998 556554441 12568999998876544443
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.13 E-value=7.7e-05 Score=70.07 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=109.5
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
.++.+.++.+ .+..+-..+..+.+|+.|++.+ +.+..+...+..+++|++|++++ +.+..+. ++..++.|+.|++.
T Consensus 73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheec
Confidence 4666666555 2444333456677788888877 45555443355677888888877 4555543 33344567777777
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD 257 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (380)
+|.. ..+ ..+..+++|+.+.++++.... +.. ...+..++.++++++....... +..+..+..+++..
T Consensus 149 ~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~~~~~l~~~~l~~-- 217 (414)
T KOG0531|consen 149 GNLI-SDI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG------LDLLKKLVLLSLLD-- 217 (414)
T ss_pred cCcc-hhc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc------hHHHHHHHHhhccc--
Confidence 7543 222 234456777777777764322 222 3556677777777765333221 11222333334433
Q ss_pred CCCcccccccccccCCCCCCCC--cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 258 DDMVSFPLEDKRLGTALPLPAS--LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
+.+..+.... .+.. |+.+++.+ +.+...+..+..+..+..|++.+ +.+..+..
T Consensus 218 n~i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~ 272 (414)
T KOG0531|consen 218 NKISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEG 272 (414)
T ss_pred ccceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-cccccccc
Confidence 3333333211 2222 78888887 56665545677777888888876 55555433
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00026 Score=70.05 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS 107 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 107 (380)
-.+|+.|+++|...+.. +++......+|+|++|.+++-..... .|.. -...|| +|..|+++
T Consensus 121 r~nL~~LdI~G~~~~s~--------~W~~kig~~LPsL~sL~i~~~~~~~~---------dF~~-lc~sFp-NL~sLDIS 181 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN--------GWPKKIGTMLPSLRSLVISGRQFDND---------DFSQ-LCASFP-NLRSLDIS 181 (699)
T ss_pred HHhhhhcCccccchhhc--------cHHHHHhhhCcccceEEecCceecch---------hHHH-HhhccC-ccceeecC
Confidence 35677777777543321 22222222344488888776321111 1111 234677 68888888
Q ss_pred cCCChhhhHhhccCCCCccEEeecCCCCCC-cccccccCCCCCcEEEccccccce------eccCCCccCCCCCEEeccC
Q 035836 108 HCSKLESIAERLDNNTSLETIDISNCESLK-ILPSGLHNLRQLQKIEIWECENLV------SFTEGGLPCAKLTRLDIYD 180 (380)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~------~l~~~~~~~~~L~~L~l~~ 180 (380)
++. ++.+ ..++++++|+.|.+.+-.... ..-..+.++++|++||++.-.... ...+....+|+|+.||.++
T Consensus 182 ~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 182 GTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred CCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 763 5544 556777888888776532222 111346678888888887532211 1112233377888888876
Q ss_pred CCC
Q 035836 181 CER 183 (380)
Q Consensus 181 ~~~ 183 (380)
...
T Consensus 260 Tdi 262 (699)
T KOG3665|consen 260 TDI 262 (699)
T ss_pred cch
Confidence 443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.94 E-value=9.6e-06 Score=77.38 Aligned_cols=104 Identities=26% Similarity=0.259 Sum_probs=64.7
Q ss_pred CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836 215 GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL 294 (380)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 294 (380)
...+.++.|+|+.|....... +..++.|++|++++ +.+..++.-. ...+ .|+.|.+++ +.++.+
T Consensus 184 qll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsy--N~L~~vp~l~------~~gc-~L~~L~lrn-N~l~tL 247 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSY--NCLRHVPQLS------MVGC-KLQLLNLRN-NALTTL 247 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHH------HHhccccccccccc--chhccccccc------hhhh-hheeeeecc-cHHHhh
Confidence 456777888888776544332 55678888888887 4455555422 1222 378888877 666666
Q ss_pred hhhhccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCch
Q 035836 295 SSSIVDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCP 336 (380)
Q Consensus 295 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~ 336 (380)
. .+.++.+|+.|++++ +-+.....-. ....|+.|++.++|
T Consensus 248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5 577778888888887 4444433211 13467777777765
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=2.8e-05 Score=74.38 Aligned_cols=125 Identities=24% Similarity=0.261 Sum_probs=87.4
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
.|...+.++|. +..+-..+.-++.|+.|+++.|.... +. .+..++.|++||++. +.+..+|.....--+|..|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhccccccccccc-chhccccccchhhhhheeeeec
Confidence 47777777764 66666677778899999999955443 32 567799999999998 6777776643222258999988
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCC--CCCCCCCCCCceEEEecCCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELP--SLEEDGLPTNLHSLEIDGNME 230 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 230 (380)
+| .++.+ .++.++.+|+.|++++|-... .+...+.+..|+.|+|.||+.
T Consensus 241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 75 34433 357788899999999873222 122345667888999999864
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00084 Score=57.83 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCcccCC---CCCcccccEEEecCchhHHHHhhccCCCCC
Q 035836 276 LPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLKYFPE---KGLPSSLLELWIWDCPLIEEKCRKDGGQYW 350 (380)
Q Consensus 276 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 350 (380)
.+|++..+.+..|+ ++.... .+..+|.+--|.++. +++.+... -.-.++|.-|-+.+.|..+..-. +...+
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~ 272 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRF 272 (418)
T ss_pred hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC--CcceE
Confidence 45566666666542 333322 455556666666665 45544333 11145677777777776664311 22233
Q ss_pred ccccCcCeeEE
Q 035836 351 NLLTHIPYVSI 361 (380)
Q Consensus 351 ~~~~~~~~~~~ 361 (380)
--++.++.+.+
T Consensus 273 llIaRL~~v~v 283 (418)
T KOG2982|consen 273 LLIARLTKVQV 283 (418)
T ss_pred EEEeeccceEE
Confidence 34555555554
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.58 E-value=0.0021 Score=54.79 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=40.3
Q ss_pred ccCCCCCEEeccCCCCcccccc----cCCCCCCccEEEeccCCCCCCC--------------CCCCCCCCceEEEecCCC
Q 035836 168 LPCAKLTRLDIYDCERLEALPK----GLHNLTSLQELTIGKGVELPSL--------------EEDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~ 229 (380)
..||.|+.+++++|..-...|+ .+.+-+.|.+|.+++|.--... .....-|.|+.+..+.|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3456666666666554333332 3344555666666655321110 011233566666666655
Q ss_pred CcchhhhhhccccCCCCccceeeeec
Q 035836 230 EIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
........|...+..-.+|+.+.+..
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeee
Confidence 43333222221133334555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.17 E-value=0.011 Score=48.27 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=35.9
Q ss_pred cCCCCCcEEEccccccceeccCCCcc-CCCCCEEeccCCCC--cccccccCCCCCCccEEEeccCCCCCCC----CCCCC
Q 035836 144 HNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCER--LEALPKGLHNLTSLQELTIGKGVELPSL----EEDGL 216 (380)
Q Consensus 144 ~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~ 216 (380)
..++.|+.|.+.+ +++..+.+.+.. +++|+.|.+.+|.. +.++ .-+..++.|+.|.+-+++....- -....
T Consensus 61 p~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEe
Confidence 3344455555544 344444443332 33455555544321 1111 12334555555555554321110 01234
Q ss_pred CCCceEEEecCC
Q 035836 217 PTNLHSLEIDGN 228 (380)
Q Consensus 217 ~~~L~~L~l~~~ 228 (380)
.++|+.||+.+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 566676666654
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0013 Score=53.48 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhhhhccccCCCCcc
Q 035836 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 248 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 248 (380)
.++.++.+++.....-.+.+.++++++.|.+.+|..+.+.- ..+..++|+.|++++|+.++.....+ +..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC---LLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---HHHhhhh
Confidence 45666666544333333445667777778888776655431 12356778888888887777666555 5667777
Q ss_pred ceeeeec
Q 035836 249 RRLAISG 255 (380)
Q Consensus 249 ~~L~l~~ 255 (380)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777765
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.44 E-value=0.2 Score=38.27 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=6.0
Q ss_pred cCCCCccceeeee
Q 035836 242 FHRFSSLRRLAIS 254 (380)
Q Consensus 242 ~~~~~~L~~L~l~ 254 (380)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 4445555555553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.26 E-value=0.0052 Score=52.09 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=20.7
Q ss_pred CCCcceEecccCCCccchhh--hhccCCCCceEeeecCC
Q 035836 277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~ 313 (380)
+|+|+++.++. +.++.+.. .++.+.+|..|++.+|.
T Consensus 90 ~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 36666666666 45554332 45555666666666654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0011 Score=56.49 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836 171 AKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR 250 (380)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 250 (380)
.+.+.|+.++| .+.++ .....++.|++|.|+-| .+..+.....|++|++|+|..|..-....... +.++|+|+.
T Consensus 19 ~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~Y---LknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEY---LKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCC-CccHH-HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHH---HhcCchhhh
Confidence 35677777764 34444 23456888888888876 44555556677788888877765433333222 667777787
Q ss_pred eeeec
Q 035836 251 LAISG 255 (380)
Q Consensus 251 L~l~~ 255 (380)
|++..
T Consensus 93 LWL~E 97 (388)
T KOG2123|consen 93 LWLDE 97 (388)
T ss_pred Hhhcc
Confidence 77765
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.44 E-value=0.23 Score=37.86 Aligned_cols=51 Identities=33% Similarity=0.473 Sum_probs=20.0
Q ss_pred CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcc
Q 035836 100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIW 155 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~ 155 (380)
+++.+.+.. .+..++ ..+..+++|+.+.+.. + +..++.. +.+. +|+.+.+.
T Consensus 59 ~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 59 SLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-EEEEETS--TT-EE-TTTTTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccc--cccccccccccccccccccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence 366666643 222222 2344566666666654 2 3333322 3334 66666554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.0071 Score=51.82 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 194 LTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 194 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
+.+.++|+..+| .++++.....++.|+.|.|+=|...+ +.+ +..|++|++|.+..
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~p-----l~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAP-----LQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chh-----HHHHHHHHHHHHHh
Confidence 345556666665 33444444455566666655543222 222 44555566665555
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.11 E-value=0.011 Score=45.12 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=33.3
Q ss_pred CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID 311 (380)
Q Consensus 244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 311 (380)
....|...++++ +.+++++.... ..++.++.|.+.+ +.+.++|..+..++.|+.|++++
T Consensus 51 ~~~el~~i~ls~--N~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 51 KGYELTKISLSD--NGFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred CCceEEEEeccc--chhhhCCHHHh------hccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 334455555555 55555555431 2444556666665 56666666666666666666666
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.92 E-value=0.0047 Score=47.16 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=46.4
Q ss_pred CccEEEEecCCC--hhhhHhhccCCCCccEEeecCCCCCCcccccccC-CCCCcEEEccccccceeccCCCccCCCCCEE
Q 035836 100 SLRSLYVSHCSK--LESIAERLDNNTSLETIDISNCESLKILPSGLHN-LRQLQKIEIWECENLVSFTEGGLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 176 (380)
.+..++++.|.. +...+..+.....|+..++++ +.+..+|..+.. ++.++.+++.+ +.+.++|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 355566666542 123334444455566666666 555556655432 44666666666 5666666666666667777
Q ss_pred eccCCCC
Q 035836 177 DIYDCER 183 (380)
Q Consensus 177 ~l~~~~~ 183 (380)
++..|+.
T Consensus 106 Nl~~N~l 112 (177)
T KOG4579|consen 106 NLRFNPL 112 (177)
T ss_pred ccccCcc
Confidence 6666443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.87 E-value=0.027 Score=47.84 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=33.4
Q ss_pred CccEEEEecC--CChhhhHhhccCCCCccEEeecCCCCC--CcccccccCCCCCcEEEccccc
Q 035836 100 SLRSLYVSHC--SKLESIAERLDNNTSLETIDISNCESL--KILPSGLHNLRQLQKIEIWECE 158 (380)
Q Consensus 100 ~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 158 (380)
+|++|.++.| .....++.....+|+|++|++++|..- .+++ .+..+.+|..|++.+|.
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence 5788888777 333344444455678888888774322 2222 23446666677776653
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.011 Score=48.21 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCCccEEEEecCCCCccccC---CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcc
Q 035836 4 TNSSLEILEIWVCHSLTYIAG---VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLT 77 (380)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 77 (380)
.++.++.|.+.+|..+.+.-- ....++|+.|+|++|+.|++-... .+..+++ |+.|.+.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn--------Lr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN--------LRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh--------hHHHHhcCchhhh
Confidence 344455555555544433211 223556666666666655554433 3334444 5555555544433
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.71 E-value=0.046 Score=46.86 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=25.9
Q ss_pred hhccCCCCccEEeecCCCCCCccccc----ccCCCCCcEEEcccc
Q 035836 117 ERLDNNTSLETIDISNCESLKILPSG----LHNLRQLQKIEIWEC 157 (380)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~ 157 (380)
..+..||+|+..+++.|.+-...|.. +..-+.|.+|.+++|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34556778888888776555444432 344567777777764
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.31 E-value=0.091 Score=24.45 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=4.2
Q ss_pred CCceEeeecC
Q 035836 303 NLTILQLIDC 312 (380)
Q Consensus 303 ~L~~L~l~~c 312 (380)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444455443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.55 E-value=0.11 Score=26.00 Aligned_cols=8 Identities=50% Similarity=0.775 Sum_probs=3.3
Q ss_pred ccEEeecC
Q 035836 125 LETIDISN 132 (380)
Q Consensus 125 L~~L~l~~ 132 (380)
|++|++++
T Consensus 2 L~~Ldls~ 9 (22)
T PF00560_consen 2 LEYLDLSG 9 (22)
T ss_dssp ESEEEETS
T ss_pred ccEEECCC
Confidence 34444444
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.82 E-value=0.15 Score=26.66 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=10.9
Q ss_pred CCCCceEeeecCCCCcc
Q 035836 301 LQNLTILQLIDCPKLKY 317 (380)
Q Consensus 301 ~~~L~~L~l~~c~~l~~ 317 (380)
+++|++|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35666677777666655
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.42 E-value=0.98 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=11.9
Q ss_pred CCCceEeeecCCCCcccCCC
Q 035836 302 QNLTILQLIDCPKLKYFPEK 321 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~~~~ 321 (380)
++|++|++++ +.++.+|..
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4566777766 566666553
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.42 E-value=0.98 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=11.9
Q ss_pred CCCceEeeecCCCCcccCCC
Q 035836 302 QNLTILQLIDCPKLKYFPEK 321 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~~~~ 321 (380)
++|++|++++ +.++.+|..
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4566777766 566666553
No 78
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=59.42 E-value=18 Score=21.61 Aligned_cols=32 Identities=22% Similarity=0.075 Sum_probs=16.3
Q ss_pred CCCceEeeecCCCCcccCCCCCcccccEEEecC
Q 035836 302 QNLTILQLIDCPKLKYFPEKGLPSSLLELWIWD 334 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 334 (380)
+++++|.+.+ ..-+.+..+.+|+++++|.+.+
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 3455555533 2222333445666777776653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.64 E-value=7.4 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=11.8
Q ss_pred CCCceEeeecCCCCcccCC
Q 035836 302 QNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~~~ 320 (380)
++|+.|.+++ ++++.+|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4566777766 66777665
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.01 E-value=9.7 Score=19.08 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=6.1
Q ss_pred CCCceEeecCCc
Q 035836 29 PSLKQLRISDCD 40 (380)
Q Consensus 29 ~~L~~L~l~~~~ 40 (380)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 456666666665
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.14 E-value=11 Score=36.03 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=4.8
Q ss_pred CCccEEEeccC
Q 035836 195 TSLQELTIGKG 205 (380)
Q Consensus 195 ~~L~~L~l~~~ 205 (380)
|+|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 34444444443
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.86 E-value=31 Score=18.04 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=8.4
Q ss_pred CCCceEeeecCCCCccc
Q 035836 302 QNLTILQLIDCPKLKYF 318 (380)
Q Consensus 302 ~~L~~L~l~~c~~l~~~ 318 (380)
.+|+.|++++ +.++.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 3556666665 444443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.76 E-value=54 Score=17.21 Aligned_cols=10 Identities=30% Similarity=0.205 Sum_probs=4.8
Q ss_pred CccEEEEecC
Q 035836 7 SLEILEIWVC 16 (380)
Q Consensus 7 ~L~~L~l~~~ 16 (380)
+|++|+|+++
T Consensus 3 ~L~~LdL~~N 12 (28)
T smart00368 3 SLRELDLSNN 12 (28)
T ss_pred ccCEEECCCC
Confidence 4455555443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=21.17 E-value=1.6 Score=36.92 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=39.6
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD 180 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 180 (380)
.+.|+++.+. +..+...+.-++.+..|+++. +.+..+|.++.....+..++... +..+..|-+....+.++.++..+
T Consensus 44 ~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNR-LVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhH-HHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 5566666553 222222333344555555554 44444555555444555555544 34455555555555666666555
Q ss_pred CC
Q 035836 181 CE 182 (380)
Q Consensus 181 ~~ 182 (380)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 44
Done!