Query 035836
Match_columns 380
No_of_seqs 175 out of 2662
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 3E-24 1E-28 195.6 23.7 302 4-366 42-345 (347)
2 3rgz_A Protein brassinosteroid 99.9 9.3E-25 3.2E-29 219.1 20.5 263 100-373 395-723 (768)
3 3rgz_A Protein brassinosteroid 99.9 3.9E-25 1.3E-29 221.8 17.5 253 94-359 438-765 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 4.3E-24 1.5E-28 214.0 23.6 342 2-374 444-825 (876)
5 4eco_A Uncharacterized protein 99.9 2.1E-24 7.2E-29 211.8 19.7 341 2-373 202-584 (636)
6 4fmz_A Internalin; leucine ric 99.9 9.7E-24 3.3E-28 192.2 20.4 282 2-336 62-344 (347)
7 3t6q_A CD180 antigen; protein- 99.9 2.7E-23 9.2E-28 203.4 24.5 222 100-336 279-511 (606)
8 2id5_A Lingo-1, leucine rich r 99.9 4.1E-23 1.4E-27 196.2 22.4 294 6-337 32-332 (477)
9 3t6q_A CD180 antigen; protein- 99.9 2E-22 6.7E-27 197.3 27.3 181 143-336 274-460 (606)
10 3v47_A TOLL-like receptor 5B a 99.9 8.6E-23 3E-27 192.8 22.1 130 6-157 30-164 (455)
11 1o6v_A Internalin A; bacterial 99.9 1.7E-22 5.7E-27 191.4 22.4 304 4-368 66-389 (466)
12 4eco_A Uncharacterized protein 99.9 5.2E-23 1.8E-27 202.0 19.2 305 22-374 198-562 (636)
13 2z63_A TOLL-like receptor 4, v 99.9 6.6E-23 2.3E-27 199.1 19.0 115 242-371 417-535 (570)
14 3o6n_A APL1; leucine-rich repe 99.9 3.1E-22 1.1E-26 185.3 21.2 290 5-340 44-354 (390)
15 3v47_A TOLL-like receptor 5B a 99.9 5E-22 1.7E-26 187.6 22.7 318 10-371 14-412 (455)
16 2z81_A CD282 antigen, TOLL-lik 99.9 5E-23 1.7E-27 199.1 16.1 62 300-367 449-510 (549)
17 2z7x_B TOLL-like receptor 1, v 99.9 4.7E-22 1.6E-26 191.0 22.5 154 169-337 322-480 (520)
18 2id5_A Lingo-1, leucine rich r 99.9 6.1E-22 2.1E-26 188.2 22.8 273 2-313 52-331 (477)
19 1o6v_A Internalin A; bacterial 99.9 2.2E-21 7.4E-26 183.7 25.9 292 2-339 86-389 (466)
20 4ecn_A Leucine-rich repeat pro 99.9 4.3E-22 1.5E-26 199.6 21.6 302 3-337 488-839 (876)
21 1ziw_A TOLL-like receptor 3; i 99.9 6.8E-22 2.3E-26 196.0 22.4 230 100-340 382-624 (680)
22 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-22 2.9E-26 192.8 21.8 290 7-339 262-559 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-21 4.5E-26 191.4 22.5 267 2-313 281-556 (606)
24 3bz5_A Internalin-J, INLJ; leu 99.9 9.5E-22 3.3E-26 185.2 19.5 273 4-336 40-350 (457)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.9E-21 2.7E-25 184.2 26.0 152 170-337 352-509 (562)
26 3oja_B Anopheles plasmodium-re 99.9 2.5E-21 8.6E-26 188.8 22.6 289 5-340 50-360 (597)
27 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-20 7.1E-25 189.4 28.9 250 100-368 267-561 (844)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-20 3.7E-25 191.5 25.7 124 195-335 266-391 (844)
29 2z7x_B TOLL-like receptor 1, v 99.9 5.4E-21 1.9E-25 183.6 22.2 57 6-73 21-79 (520)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-20 4E-25 183.0 23.3 157 192-367 350-510 (562)
31 3oja_B Anopheles plasmodium-re 99.9 5.7E-21 1.9E-25 186.3 21.1 287 28-367 50-358 (597)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-20 6.3E-25 176.4 23.4 265 2-320 60-356 (457)
33 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-20 7.4E-25 185.2 24.8 264 94-371 325-626 (680)
34 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-21 1.1E-25 186.6 17.8 60 275-337 448-509 (549)
35 1xku_A Decorin; proteoglycan, 99.9 2.5E-20 8.7E-25 168.4 22.6 287 30-364 32-329 (330)
36 4fcg_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 174.0 15.1 217 100-333 82-309 (328)
37 3o6n_A APL1; leucine-rich repe 99.9 3.1E-20 1.1E-24 171.8 21.6 288 27-367 43-352 (390)
38 4fcg_A Uncharacterized protein 99.9 9.5E-21 3.2E-25 170.8 16.9 219 65-311 83-310 (328)
39 2ft3_A Biglycan; proteoglycan, 99.9 5.2E-20 1.8E-24 166.5 21.2 286 30-364 34-330 (332)
40 2z63_A TOLL-like receptor 4, v 99.9 3.2E-20 1.1E-24 180.2 21.2 89 275-369 418-509 (570)
41 1xku_A Decorin; proteoglycan, 99.9 1.4E-19 4.6E-24 163.6 23.6 282 7-335 32-329 (330)
42 2ft3_A Biglycan; proteoglycan, 99.8 1E-19 3.6E-24 164.5 20.1 282 7-336 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 99.8 9.7E-21 3.3E-25 169.7 12.7 249 65-339 52-305 (313)
44 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 7.9E-25 167.3 14.4 251 29-318 50-307 (313)
45 4g8a_A TOLL-like receptor 4; l 99.8 6.4E-19 2.2E-23 173.1 24.0 135 191-338 441-580 (635)
46 2z80_A TOLL-like receptor 2, v 99.8 4.2E-19 1.4E-23 161.9 20.5 272 28-336 30-312 (353)
47 3zyj_A Leucine-rich repeat-con 99.8 2.6E-18 8.8E-23 161.4 23.8 242 31-313 45-290 (440)
48 1jl5_A Outer protein YOPM; leu 99.8 3.7E-18 1.3E-22 160.6 23.7 264 6-336 91-368 (454)
49 3zyi_A Leucine-rich repeat-con 99.8 1.6E-18 5.5E-23 163.4 20.5 222 98-336 74-301 (452)
50 3zyi_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 160.2 23.3 242 31-313 56-301 (452)
51 3zyj_A Leucine-rich repeat-con 99.8 2.1E-18 7.2E-23 162.0 20.0 222 97-336 62-290 (440)
52 4g8a_A TOLL-like receptor 4; l 99.8 3.1E-18 1.1E-22 168.2 22.1 111 243-367 466-580 (635)
53 1jl5_A Outer protein YOPM; leu 99.8 3.4E-17 1.2E-21 154.0 26.4 293 8-373 73-378 (454)
54 2z66_A Variable lymphocyte rec 99.8 2.3E-18 8E-23 153.8 17.6 171 10-205 11-185 (306)
55 2z66_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 152.4 17.9 223 98-337 27-260 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-17 9.4E-22 159.6 24.4 257 7-339 41-298 (622)
57 1ozn_A Reticulon 4 receptor; N 99.8 4.5E-18 1.5E-22 150.4 16.3 193 10-228 15-211 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.5E-24 161.7 6.2 242 27-317 32-277 (317)
59 1ozn_A Reticulon 4 receptor; N 99.8 2.9E-17 9.8E-22 145.1 19.9 201 98-313 31-236 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-17 1.5E-21 158.2 22.3 259 29-368 40-298 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.8 6.5E-18 2.2E-22 151.6 15.0 214 100-338 35-250 (317)
62 2z80_A TOLL-like receptor 2, v 99.8 6E-18 2.1E-22 154.2 14.3 270 6-313 31-312 (353)
63 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5.2E-22 157.8 15.9 215 100-339 35-251 (487)
64 1z7x_W Ribonuclease inhibitor; 99.7 2.1E-20 7.2E-25 176.7 -4.7 313 4-336 26-381 (461)
65 3ogk_B Coronatine-insensitive 99.7 3.3E-19 1.1E-23 173.8 3.0 301 3-337 70-448 (592)
66 2xwt_C Thyrotropin receptor; s 99.7 3.7E-17 1.3E-21 140.6 15.5 204 97-337 29-238 (239)
67 3oja_A Leucine-rich immune mol 99.7 9.2E-18 3.1E-22 159.3 11.3 235 27-310 32-270 (487)
68 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5.2E-23 155.4 5.2 200 121-336 93-307 (312)
69 2xwt_C Thyrotropin receptor; s 99.7 1.2E-16 4.2E-21 137.3 16.4 160 96-264 53-221 (239)
70 2p1m_B Transport inhibitor res 99.7 1.9E-18 6.5E-23 168.5 1.8 61 277-339 455-520 (594)
71 2p1m_B Transport inhibitor res 99.7 4.4E-18 1.5E-22 165.9 1.4 59 276-337 430-493 (594)
72 1p9a_G Platelet glycoprotein I 99.7 1.7E-15 5.9E-20 133.9 17.9 197 2-229 6-206 (290)
73 3ogk_B Coronatine-insensitive 99.7 5.8E-17 2E-21 158.0 8.6 227 95-336 267-524 (592)
74 1p9a_G Platelet glycoprotein I 99.7 3E-15 1E-19 132.3 18.7 191 65-287 12-204 (290)
75 2z62_A TOLL-like receptor 4, v 99.7 1.2E-15 4E-20 134.1 15.7 199 97-312 26-234 (276)
76 4ay9_X Follicle-stimulating ho 99.7 2.8E-15 9.5E-20 136.3 18.5 238 10-310 13-254 (350)
77 4ay9_X Follicle-stimulating ho 99.7 8E-15 2.7E-19 133.3 21.3 222 97-335 28-256 (350)
78 2ast_B S-phase kinase-associat 99.7 5.2E-17 1.8E-21 146.9 6.1 220 101-335 49-282 (336)
79 1h6u_A Internalin H; cell adhe 99.7 1.9E-15 6.6E-20 134.8 16.0 198 94-320 37-234 (308)
80 2o6q_A Variable lymphocyte rec 99.7 5E-15 1.7E-19 129.6 18.1 62 242-312 153-215 (270)
81 1h6u_A Internalin H; cell adhe 99.7 1.3E-15 4.3E-20 136.0 14.1 196 26-264 38-233 (308)
82 1wwl_A Monocyte differentiatio 99.6 2.1E-16 7.3E-21 141.4 8.7 201 96-317 93-310 (312)
83 2z62_A TOLL-like receptor 4, v 99.6 5.4E-15 1.9E-19 129.8 16.9 207 112-335 19-234 (276)
84 1z7x_W Ribonuclease inhibitor; 99.6 2.4E-17 8.1E-22 155.8 1.8 308 3-336 53-409 (461)
85 2ast_B S-phase kinase-associat 99.6 2.2E-17 7.6E-22 149.4 1.3 106 100-205 94-205 (336)
86 2o6q_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 125.3 19.5 147 101-255 63-214 (270)
87 3rfs_A Internalin B, repeat mo 99.6 1E-14 3.6E-19 127.7 15.4 147 100-255 64-214 (272)
88 3rfs_A Internalin B, repeat mo 99.6 4E-15 1.4E-19 130.3 11.9 203 25-267 37-242 (272)
89 4glp_A Monocyte differentiatio 99.6 5.5E-15 1.9E-19 132.1 12.7 223 100-336 65-305 (310)
90 4glp_A Monocyte differentiatio 99.6 5.6E-15 1.9E-19 132.0 10.0 200 100-316 92-307 (310)
91 2ca6_A RAN GTPase-activating p 99.5 1.4E-15 4.7E-20 140.3 3.5 209 94-317 56-317 (386)
92 3m19_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 115.7 17.0 61 242-311 127-188 (251)
93 3m19_A Variable lymphocyte rec 99.5 5.5E-13 1.9E-17 115.3 15.7 133 94-230 55-191 (251)
94 4ezg_A Putative uncharacterize 99.5 4.4E-13 1.5E-17 111.4 13.4 151 27-206 42-192 (197)
95 1h6t_A Internalin B; cell adhe 99.5 4.6E-13 1.6E-17 118.4 13.9 163 100-311 47-209 (291)
96 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4.3E-19 133.9 3.5 229 95-336 29-314 (386)
97 4ezg_A Putative uncharacterize 99.5 4E-13 1.4E-17 111.6 12.0 149 95-255 41-190 (197)
98 1h6t_A Internalin B; cell adhe 99.5 8.2E-13 2.8E-17 116.7 13.8 146 170-337 67-212 (291)
99 3goz_A Leucine-rich repeat-con 99.4 3.4E-14 1.2E-18 129.7 4.4 231 94-336 17-295 (362)
100 3goz_A Leucine-rich repeat-con 99.4 8.5E-15 2.9E-19 133.8 0.2 227 11-255 3-262 (362)
101 3cvr_A Invasion plasmid antige 99.4 4.5E-12 1.5E-16 121.7 16.2 110 100-228 81-190 (571)
102 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.4E-17 126.6 11.7 121 100-229 88-208 (605)
103 1m9s_A Internalin B; cell inva 99.4 2.9E-12 9.9E-17 124.2 13.6 175 120-320 40-214 (605)
104 3cvr_A Invasion plasmid antige 99.4 9.3E-12 3.2E-16 119.4 16.0 141 100-265 101-248 (571)
105 1xeu_A Internalin C; cellular 99.4 1.6E-12 5.4E-17 113.1 9.3 119 101-229 21-139 (263)
106 2o6s_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 102.5 14.1 142 99-255 28-174 (208)
107 3e6j_A Variable lymphocyte rec 99.3 4.9E-11 1.7E-15 101.4 14.2 125 172-311 41-168 (229)
108 2o6s_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 102.5 10.3 170 9-212 10-182 (208)
109 1xeu_A Internalin C; cellular 99.3 8.7E-12 3E-16 108.4 8.5 171 122-319 18-188 (263)
110 2v9t_B SLIT homolog 2 protein 99.3 1.2E-10 4.2E-15 98.3 15.3 75 127-205 15-90 (220)
111 2v9t_B SLIT homolog 2 protein 99.3 9.3E-11 3.2E-15 99.0 14.3 131 98-230 31-164 (220)
112 2xot_A Amphoterin-induced prot 99.3 8E-11 2.7E-15 107.3 14.8 156 101-264 20-179 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.3 1.1E-10 3.7E-15 98.6 14.1 108 95-206 54-164 (220)
114 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 99.0 14.3 126 100-229 41-170 (229)
115 3sb4_A Hypothetical leucine ri 99.2 8.6E-12 3E-16 112.2 7.5 215 97-331 100-327 (329)
116 2xot_A Amphoterin-induced prot 99.2 4.4E-11 1.5E-15 109.0 10.7 102 100-205 65-173 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 2.2E-10 7.7E-15 96.6 13.8 131 98-231 31-166 (220)
118 1dce_A Protein (RAB geranylger 99.2 2.9E-13 1E-17 130.3 -4.6 192 95-331 346-566 (567)
119 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.2E-15 104.7 11.8 100 244-360 224-327 (329)
120 2ell_A Acidic leucine-rich nuc 99.2 1.7E-10 5.9E-15 92.9 11.4 134 171-320 24-164 (168)
121 2ell_A Acidic leucine-rich nuc 99.1 1.4E-10 4.8E-15 93.5 9.4 128 123-255 24-156 (168)
122 4fdw_A Leucine rich hypothetic 99.1 7.7E-09 2.6E-13 95.2 21.8 210 100-335 158-380 (401)
123 2je0_A Acidic leucine-rich nuc 99.1 3.6E-10 1.2E-14 89.1 9.5 125 171-310 17-148 (149)
124 4fdw_A Leucine rich hypothetic 99.1 7.2E-09 2.5E-13 95.4 19.6 256 6-311 113-379 (401)
125 2je0_A Acidic leucine-rich nuc 99.1 2.7E-10 9.4E-15 89.8 7.7 83 94-179 60-148 (149)
126 1w8a_A SLIT protein; signaling 99.0 2.4E-09 8.3E-14 88.2 11.4 104 100-205 30-136 (192)
127 4fs7_A Uncharacterized protein 99.0 4.5E-08 1.5E-12 90.1 20.4 289 2-334 67-375 (394)
128 2wfh_A SLIT homolog 2 protein 99.0 7E-09 2.4E-13 85.5 12.1 102 100-205 32-136 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.0 8.2E-10 2.8E-14 89.7 6.3 129 26-182 16-151 (176)
130 1w8a_A SLIT protein; signaling 98.9 7.4E-09 2.5E-13 85.3 11.8 125 101-230 10-138 (192)
131 1a9n_A U2A', U2A'; complex (nu 98.9 2.7E-09 9.4E-14 86.5 8.4 34 277-311 87-122 (176)
132 4b8c_D Glucose-repressible alc 98.9 2E-09 6.7E-14 106.9 9.0 109 94-207 220-328 (727)
133 2wfh_A SLIT homolog 2 protein 98.9 1.2E-08 4.2E-13 84.0 12.1 122 102-229 13-137 (193)
134 4b8c_D Glucose-repressible alc 98.9 1.3E-09 4.3E-14 108.3 5.7 108 140-255 217-325 (727)
135 1dce_A Protein (RAB geranylger 98.9 4.2E-09 1.4E-13 101.4 8.7 208 26-253 346-567 (567)
136 2o6r_A Variable lymphocyte rec 98.8 3.1E-08 1.1E-12 80.3 12.2 79 100-181 29-110 (177)
137 2o6r_A Variable lymphocyte rec 98.8 4.7E-08 1.6E-12 79.2 12.4 123 101-229 9-135 (177)
138 4gt6_A Cell surface protein; l 98.7 3.1E-06 1E-10 77.8 22.9 104 215-336 262-368 (394)
139 4fs7_A Uncharacterized protein 98.7 2.2E-06 7.6E-11 78.7 21.2 289 19-363 59-375 (394)
140 1ds9_A Outer arm dynein; leuci 98.7 2E-10 7E-15 95.2 -6.3 124 100-229 24-151 (198)
141 1ds9_A Outer arm dynein; leuci 98.6 1.7E-10 5.8E-15 95.7 -8.1 130 137-308 38-180 (198)
142 3g39_A Variable lymphocyte rec 98.6 1.4E-07 4.8E-12 75.9 9.2 37 143-180 50-87 (170)
143 2r9u_A Variable lymphocyte rec 98.6 1.6E-07 5.5E-12 75.8 9.4 81 123-205 33-115 (174)
144 4gt6_A Cell surface protein; l 98.6 6.8E-06 2.3E-10 75.5 21.3 264 2-311 59-366 (394)
145 3e4g_A ATP synthase subunit S, 98.6 1E-07 3.5E-12 76.1 6.5 89 218-317 61-154 (176)
146 3g39_A Variable lymphocyte rec 98.5 1.1E-06 3.7E-11 70.6 11.4 99 125-229 11-113 (170)
147 2r9u_A Variable lymphocyte rec 98.5 1.4E-06 4.7E-11 70.3 11.4 98 126-229 15-116 (174)
148 4h09_A Hypothetical leucine ri 98.5 3.6E-05 1.2E-09 70.1 21.8 33 276-309 284-317 (379)
149 4h09_A Hypothetical leucine ri 98.4 0.00011 3.9E-09 66.8 22.9 134 169-323 215-352 (379)
150 3e4g_A ATP synthase subunit S, 98.3 6.4E-07 2.2E-11 71.5 5.0 90 29-138 61-154 (176)
151 2ifg_A High affinity nerve gro 98.3 5.9E-06 2E-10 74.4 11.5 101 102-206 11-114 (347)
152 2ra8_A Uncharacterized protein 98.3 1.9E-06 6.6E-11 77.8 7.9 63 244-312 250-317 (362)
153 2ra8_A Uncharacterized protein 98.2 1.5E-06 5.2E-11 78.5 6.8 137 190-336 167-318 (362)
154 2ifg_A High affinity nerve gro 98.2 4.9E-06 1.7E-10 75.0 10.1 81 100-183 32-115 (347)
155 3un9_A NLR family member X1; l 98.2 4.2E-07 1.4E-11 82.7 2.1 106 100-206 127-250 (372)
156 3un9_A NLR family member X1; l 98.1 3.3E-07 1.1E-11 83.4 0.4 159 65-231 74-252 (372)
157 1io0_A Tropomodulin; LRR prote 96.9 0.00079 2.7E-08 54.5 4.4 15 297-311 146-160 (185)
158 1io0_A Tropomodulin; LRR prote 96.8 0.00074 2.5E-08 54.6 3.6 12 218-229 151-162 (185)
159 3rw6_A Nuclear RNA export fact 96.5 0.0015 5E-08 56.0 3.4 80 120-201 167-257 (267)
160 3rw6_A Nuclear RNA export fact 96.5 0.0014 4.9E-08 56.1 3.1 36 170-205 169-206 (267)
161 3rfe_A Platelet glycoprotein I 93.7 0.091 3.1E-06 39.4 5.0 37 276-313 29-66 (130)
162 3rfe_A Platelet glycoprotein I 88.6 0.75 2.6E-05 34.3 5.3 6 149-154 33-38 (130)
163 1pgv_A TMD-1, tropomodulin TMD 81.9 1 3.4E-05 36.3 3.3 35 171-205 98-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 76.7 3 0.0001 33.5 4.5 35 194-228 97-136 (197)
165 2lz0_A Uncharacterized protein 39.4 23 0.00079 24.6 3.0 35 275-311 17-52 (100)
166 2lz0_A Uncharacterized protein 26.8 76 0.0026 21.9 3.9 44 18-72 7-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3e-24 Score=195.58 Aligned_cols=302 Identities=20% Similarity=0.203 Sum_probs=201.1
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
.+++|+.|++.++ .+..++....+++|++|++++|. +..++. +..++. |++|+++++. +..+
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~--------L~~L~L~~n~-i~~~---- 103 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP---LSNLVK--------LTNLYIGTNK-ITDI---- 103 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSC-CCCC----
T ss_pred hcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh---hhcCCc--------CCEEEccCCc-ccCc----
Confidence 5678999999886 55666666778999999999886 776663 566677 9999998873 3333
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF 163 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 163 (380)
+ .+..++ +|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|++|+++++ .+..+
T Consensus 104 --~------~~~~l~-~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~ 170 (347)
T 4fmz_A 104 --S------ALQNLT-NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDV 170 (347)
T ss_dssp --G------GGTTCT-TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCC
T ss_pred --h------HHcCCC-cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCc
Confidence 1 355666 69999998875 555544 77888999999988766665543 777888888888874 44444
Q ss_pred cCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836 164 TEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 243 (380)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (380)
+. +..+++|++|++++|. +..++. +..+++|+.|++++|.. ...+....+++|++|++++|..... .. +.
T Consensus 171 ~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~-~~-----~~ 240 (347)
T 4fmz_A 171 TP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITDL-SP-----LA 240 (347)
T ss_dssp GG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCC-GG-----GT
T ss_pred hh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCC-CCCchhhcCCcCCEEEccCCccCCC-cc-----hh
Confidence 43 5567788888888764 334433 66677888888887743 3333355677888888888754332 22 55
Q ss_pred CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCC-
Q 035836 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKG- 322 (380)
Q Consensus 244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~- 322 (380)
.+++|+.|++++ | .+..++. . ..+++|++|+++++ .++.++ .+..+++|++|++++| .++..+...
T Consensus 241 ~l~~L~~L~l~~-n-~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l 307 (347)
T 4fmz_A 241 NLSQLTWLEIGT-N-QISDINA-V-------KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVI 307 (347)
T ss_dssp TCTTCCEEECCS-S-CCCCCGG-G-------TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHH
T ss_pred cCCCCCEEECCC-C-ccCCChh-H-------hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHh
Confidence 677888888887 3 4444432 2 46678888888874 666664 5677788888888875 444433211
Q ss_pred -CcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceee
Q 035836 323 -LPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWV 366 (380)
Q Consensus 323 -~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (380)
-.++|++|++++|+.... . .+..++.+..+.+.++.+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~-~------~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDI-R------PLASLSKMDSADFANQVI 345 (347)
T ss_dssp HTCTTCSEEECCSSSCCCC-G------GGGGCTTCSEESSSCC--
T ss_pred hccccCCEEEccCCccccc-c------Chhhhhccceeehhhhcc
Confidence 245788888887763221 1 133455666666666554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.3e-25 Score=219.06 Aligned_cols=263 Identities=18% Similarity=0.130 Sum_probs=190.3
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|+++++.....+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 58888888876555778888888899999998876666778788888899999998865444667777778889999998
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
+|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|......+.. +..+++|+.|++++ |.
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~-N~ 549 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLDLNT-NL 549 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG----GGGCTTCCEEECCS-SE
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCCCEEECCC-Cc
Confidence 8877777888888888999999998876555553 356788999999988765444321 56788899999887 44
Q ss_pred CCccccccccc---------------------------------------------------------------ccCCCC
Q 035836 259 DMVSFPLEDKR---------------------------------------------------------------LGTALP 275 (380)
Q Consensus 259 ~l~~~~~~~~~---------------------------------------------------------------~~~~~~ 275 (380)
....+|..... ....+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 33344432211 011234
Q ss_pred CCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc-ccCCC-CCcccccEEEecCchhHHHHhhccCCCCCccc
Q 035836 276 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK-YFPEK-GLPSSLLELWIWDCPLIEEKCRKDGGQYWNLL 353 (380)
Q Consensus 276 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 353 (380)
.+++|++|+++++.--..+|..+.++++|+.|++++| .++ .+|.. +-.++|+.|++++|.... ...+.+..+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g-----~ip~~l~~l 703 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDG-----RIPQAMSAL 703 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEE-----CCCGGGGGC
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccC-----cCChHHhCC
Confidence 4678889999985433467778889999999999984 454 55552 225688999998875432 344456667
Q ss_pred cCcCeeEECceeeecCCCCC
Q 035836 354 THIPYVSIDYKWVFDDDPTE 373 (380)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~ 373 (380)
+.+..+.+.++.+...+|..
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSEEECCSSEEEEECCSS
T ss_pred CCCCEEECcCCcccccCCCc
Confidence 78888888888888877754
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=3.9e-25 Score=221.82 Aligned_cols=253 Identities=18% Similarity=0.081 Sum_probs=154.2
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
+..++ +|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|
T Consensus 438 l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 438 LGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 34455 47777777776544666777777777777777765555667667777777777777754333566666667777
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-----------------------------------------
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE----------------------------------------- 212 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----------------------------------------- 212 (380)
+.|++++|.....+|..+..+++|+.|++++|.....+|
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 777777776666777777777777777777664321111
Q ss_pred ------------------------------CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836 213 ------------------------------EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS 262 (380)
Q Consensus 213 ------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 262 (380)
....+++|+.|++++|.....++. . ++.+++|+.|++++ +.....
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~---l~~l~~L~~L~Ls~-N~l~g~ 671 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E---IGSMPYLFILNLGH-NDISGS 671 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-G---GGGCTTCCEEECCS-SCCCSC
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-H---HhccccCCEEeCcC-CccCCC
Confidence 012245677778877764433332 1 55777888888887 444446
Q ss_pred cccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHH--
Q 035836 263 FPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE-- 340 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~-- 340 (380)
+|... ..+++|++|+++++.--..+|..+.++++|++|++++|+--..+|..+...++....+.+|+.++.
T Consensus 672 ip~~l-------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 672 IPDEV-------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCGGG-------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CChHH-------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 66665 467788888888843333667778888888888888854444566655444555555555554432
Q ss_pred --HhhccCCCCCccccCcCee
Q 035836 341 --KCRKDGGQYWNLLTHIPYV 359 (380)
Q Consensus 341 --~~~~~~~~~~~~~~~~~~~ 359 (380)
.|....+++|++++|++..
T Consensus 745 l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 745 LPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SCCCCSCC-------------
T ss_pred CcCCCCCccCCCCCCCCcccc
Confidence 4677777888888887764
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=4.3e-24 Score=213.96 Aligned_cols=342 Identities=15% Similarity=0.115 Sum_probs=242.1
Q ss_pred CCCCCCccEEEEecCCCCc-----------------cccC-CC--CCCCCceEeecCCcCccccccccceecCCCCcccc
Q 035836 2 CDTNSSLEILEIWVCHSLT-----------------YIAG-VQ--LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYT 61 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~-----------------~~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 61 (380)
++++++|++|+|++|.... .+|. .. .+++|+.|++++|.-...+|. .+..++.
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~--~l~~L~~----- 516 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPE----- 516 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG--GGGGCSS-----
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH--HHhCCCC-----
Confidence 5678999999999986433 1666 33 689999999999986666774 4778888
Q ss_pred ccccceeEeecCCCccc--ccccCCCCcccccc--ccCCCCCCccEEEEecCCChhhhHh--hccCCCCccEEeecCCCC
Q 035836 62 SYLLEELRICSCRSLTC--IFSKNELPATLESL--EVGNLPPSLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCES 135 (380)
Q Consensus 62 ~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~ 135 (380)
|+.|+++++..++. + |..+..+ ....+| +|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 517 ---L~~L~Ls~N~~lsg~~i------P~~i~~L~~~~~~l~-~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 517 ---LQSLNIACNRGISAAQL------KADWTRLADDEDTGP-KIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp ---CCEEECTTCTTSCHHHH------HHHHHHHHHCTTTTT-TCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-
T ss_pred ---CCEEECcCCCCcccccc------hHHHHhhhhcccccC-CccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-
Confidence 99999999864443 2 3333322 234566 69999999986 558888 89999999999999955
Q ss_pred CCcccccccCCCCCcEEEccccccceeccCCCccCCC-CCEEeccCCCCcccccccCCCCC--CccEEEeccCCCCCCCC
Q 035836 136 LKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK-LTRLDIYDCERLEALPKGLHNLT--SLQELTIGKGVELPSLE 212 (380)
Q Consensus 136 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~ 212 (380)
+..+| .+..+++|+.|+++++ .+..+|..+..+++ |+.|++++|. +..+|..+..++ +|+.|++++|.....++
T Consensus 585 l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 45888 7888999999999984 56688888888888 9999999976 447887776655 49999999986544433
Q ss_pred CC------CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccccc-CCCCCCCCcceEec
Q 035836 213 ED------GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLG-TALPLPASLTSLWI 285 (380)
Q Consensus 213 ~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l 285 (380)
.. ...++|+.|++++|... .++..+ +..+++|+.|++++ +.+..++....... .....+++|++|++
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~---~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTEL---FATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH---HHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred cchhhhccccCCCcCEEEccCCcCC-ccCHHH---HccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEEC
Confidence 22 13458999999998755 333322 45778999999988 46667776442100 01122348889999
Q ss_pred ccCCCccchhhhhc--cCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHH-HhhccCCCCCccccCcCeeEE
Q 035836 286 EDFPNLERLSSSIV--DLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEE-KCRKDGGQYWNLLTHIPYVSI 361 (380)
Q Consensus 286 ~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~ 361 (380)
++ +.++.+|..+. .+++|+.|++++ +.++.+|.. .-.++|+.|++++|+.+.. .........+..++.+..+.+
T Consensus 736 s~-N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 736 RF-NKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CS-SCCCCCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CC-CCCccchHHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 88 47778887665 888899999988 566667652 2246888888877542211 011122334555677788888
Q ss_pred CceeeecCCCCCC
Q 035836 362 DYKWVFDDDPTED 374 (380)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (380)
.++.+ ..+|...
T Consensus 814 s~N~L-~~Ip~~l 825 (876)
T 4ecn_A 814 GSNDI-RKVDEKL 825 (876)
T ss_dssp CSSCC-CBCCSCC
T ss_pred CCCCC-CccCHhh
Confidence 88777 6666653
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.1e-24 Score=211.84 Aligned_cols=341 Identities=12% Similarity=0.125 Sum_probs=230.4
Q ss_pred CCCCCCccEEEEecCCCCcc------------------ccC-CC--CCCCCceEeecCCcCccccccccceecCCCCccc
Q 035836 2 CDTNSSLEILEIWVCHSLTY------------------IAG-VQ--LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRY 60 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 60 (380)
++++++|++|+|+++. ++. +|. .. .+++|++|++++|.-...+|. .+..++.
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~---- 274 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPE---- 274 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSS----
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCC----
Confidence 5678999999999986 454 666 44 689999999999985566664 4677777
Q ss_pred cccccceeEeecCCCccc--ccccCCCCcccccc-ccCCCCCCccEEEEecCCChhhhHh--hccCCCCccEEeecCCCC
Q 035836 61 TSYLLEELRICSCRSLTC--IFSKNELPATLESL-EVGNLPPSLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCES 135 (380)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~ 135 (380)
|+.|+++++..++. + |..+..+ ....++ +|++|++++|. +..+|. .++.+++|++|++++|..
T Consensus 275 ----L~~L~Ls~n~~l~~~~l------p~~~~~L~~~~~l~-~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 275 ----MQLINVACNRGISGEQL------KDDWQALADAPVGE-KIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp ----CCEEECTTCTTSCHHHH------HHHHHHHHHSGGGG-TCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ----CCEEECcCCCCCccccc------hHHHHhhhccccCC-CCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence 99999998863442 2 3322221 011235 69999999985 558888 889999999999998655
Q ss_pred CCcccccccCCCCCcEEEccccccceeccCCCccCCC-CCEEeccCCCCcccccccCCCCC--CccEEEeccCCCCCCCC
Q 035836 136 LKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK-LTRLDIYDCERLEALPKGLHNLT--SLQELTIGKGVELPSLE 212 (380)
Q Consensus 136 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~ 212 (380)
...+| .+..+++|++|++++ +.+..+|..+..+++ |++|++++|... .+|..+...+ +|+.|++++|......|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAY-NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCS-SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCC-CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 54788 778889999999988 467788888888888 999999987644 7887776544 89999999886544433
Q ss_pred CC-C-------CCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccccc-CCCCCCCCcceE
Q 035836 213 ED-G-------LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLG-TALPLPASLTSL 283 (380)
Q Consensus 213 ~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L 283 (380)
.. . ..++|+.|++++|... .++... +..+++|+.|++++ +.+..++....... .....+++|++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~l~~L~~L~Ls~--N~l~~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL---FSTGSPLSSINLMG--NMLTEIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH---HHTTCCCSEEECCS--SCCSBCCSSSSEETTEECTTGGGCCEE
T ss_pred hhhcccccccccCCCCCEEECcCCccC-cCCHHH---HccCCCCCEEECCC--CCCCCcCHHHhccccccccccCCccEE
Confidence 21 2 4568999999988654 333322 45678888888887 45556665431100 001122378888
Q ss_pred ecccCCCccchhhhhc--cCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHH-HhhccCCCCCccccCcCee
Q 035836 284 WIEDFPNLERLSSSIV--DLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEE-KCRKDGGQYWNLLTHIPYV 359 (380)
Q Consensus 284 ~l~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~ 359 (380)
++++ +.++.+|..+. .+++|++|++++ +.++.+|.. .-.++|++|++++|..+.. .........+..++.+..+
T Consensus 494 ~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRF-NKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCS-SCCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcC-CcCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 8887 46667777665 788888888887 456666552 1246778888765431110 0111222334456667777
Q ss_pred EECceeeecCCCCC
Q 035836 360 SIDYKWVFDDDPTE 373 (380)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (380)
.+.++.+ ..+|..
T Consensus 572 ~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 572 QIGSNDI-RKVNEK 584 (636)
T ss_dssp ECCSSCC-CBCCSC
T ss_pred ECCCCcC-CccCHh
Confidence 7777776 555554
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=9.7e-24 Score=192.24 Aligned_cols=282 Identities=20% Similarity=0.200 Sum_probs=208.6
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS 81 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (380)
++.+++|++|++++| .++.++....+++|++|++++|. +..++ .+..++. |++|+++++. +..+
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~---~~~~l~~--------L~~L~l~~n~-i~~~-- 125 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS---ALQNLTN--------LRELYLNEDN-ISDI-- 125 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG---GGTTCTT--------CSEEECTTSC-CCCC--
T ss_pred hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch---HHcCCCc--------CCEEECcCCc-ccCc--
Confidence 356889999999987 56666667788999999999986 77665 3667777 9999998864 3332
Q ss_pred cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836 82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV 161 (380)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 161 (380)
+ ++..++ +|++|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|+++++ .+.
T Consensus 126 ----~------~~~~l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~ 190 (347)
T 4fmz_A 126 ----S------PLANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIE 190 (347)
T ss_dssp ----G------GGTTCT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCC
T ss_pred ----h------hhccCC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccc
Confidence 1 345666 699999999876665544 7889999999999854 444443 677899999999884 566
Q ss_pred eccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836 162 SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 162 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (380)
.++. +..+++|+.+++++|... .++. +..+++|+.|++++|.. +..+....+++|++|++++|.... ...
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~-~~~----- 260 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISD-INA----- 260 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCC-CGG-----
T ss_pred cccc-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCC-Chh-----
Confidence 6554 566789999999986443 3333 67788999999998854 444446778899999999986433 322
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
+..+++|+.|++++ | .+..++. . ..+++|++|++++| .+... +..+..+++|++|++++|+ ++.++.
T Consensus 261 ~~~l~~L~~L~l~~-n-~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGS-N-QISDISV-L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCS-S-CCCCCGG-G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred HhcCCCcCEEEccC-C-ccCCChh-h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 67889999999998 3 5555543 2 47789999999996 55544 4578889999999999964 666655
Q ss_pred CCCcccccEEEecCch
Q 035836 321 KGLPSSLLELWIWDCP 336 (380)
Q Consensus 321 ~~~~~~L~~L~l~~c~ 336 (380)
....++|++|++++|+
T Consensus 329 ~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEESSSCC-
T ss_pred hhhhhccceeehhhhc
Confidence 3445789999999876
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.7e-23 Score=203.40 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=116.8
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEec
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDI 178 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 178 (380)
+|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|+++++.....++.. +..+++|++|++
T Consensus 279 ~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 46666666653 4455555566666666666654333333344555566666666554332233332 344556666666
Q ss_pred cCCCCcccc--cccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 179 YDCERLEAL--PKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 179 ~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
++|...... +..+..+++|+.|++++|......+ ....+++|+.|++++|.........+ +..+++|+.|++++
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSH 434 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT---TTTCTTCCEEECTT
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh---hhCcccCCEEECCC
Confidence 655433322 3445566666666666654322222 22445666666666655333222211 45566667777666
Q ss_pred CCCCCccc-ccccccccCCCCCCCCcceEecccCCCccc--hh--hhhccCCCCceEeeecCCCCcccCCCCC--ccccc
Q 035836 256 CDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLER--LS--SSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLL 328 (380)
Q Consensus 256 ~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~ 328 (380)
| .+... +... ..+++|++|+++++ .+.. ++ ..+..+++|++|++++| .++.++...+ .++|+
T Consensus 435 -n-~l~~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 435 -S-LLDISSEQLF-------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp -C-CCBTTCTTTT-------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred -C-ccCCcCHHHH-------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCC
Confidence 3 22222 2222 45667777777763 3332 11 25666777777777774 4555543222 45677
Q ss_pred EEEecCch
Q 035836 329 ELWIWDCP 336 (380)
Q Consensus 329 ~L~l~~c~ 336 (380)
+|++++|.
T Consensus 504 ~L~Ls~N~ 511 (606)
T 3t6q_A 504 HVDLSHNR 511 (606)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77777764
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.1e-23 Score=196.23 Aligned_cols=294 Identities=17% Similarity=0.172 Sum_probs=215.6
Q ss_pred CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
++++.|+++++ .++.+++ +..+++|++|+++++. +..+... .+..++. |+.|+++++. +..+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~---- 95 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG-AFNNLFN--------LRTLGLRSNR-LKLI---- 95 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCSC----
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh-hhhCCcc--------CCEEECCCCc-CCcc----
Confidence 47889999886 4555543 5568899999999886 7776554 5677777 9999998763 3333
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF 163 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 163 (380)
+.. .+..++ +|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|+++++ .+..+
T Consensus 96 --~~~----~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 167 (477)
T 2id5_A 96 --PLG----VFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSI 167 (477)
T ss_dssp --CTT----SSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSC
T ss_pred --Ccc----cccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCccc
Confidence 110 244566 6999999988654455677888999999999985444444556778899999999884 56665
Q ss_pred cC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccc
Q 035836 164 TE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 164 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (380)
+. .+..+++|+.|++.+|......+..+..+++|+.|++++|.....++.. ....+|++|++++|... ..+...
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~--- 243 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA--- 243 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHH---
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHH---
Confidence 54 3456789999999987665555567888999999999988776665533 34558999999998644 333222
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
+..+++|+.|++++ +.+..++... +..+++|++|++++ +.+..+ +..+.++++|++|++++ +.++.++.
T Consensus 244 ~~~l~~L~~L~Ls~--n~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 313 (477)
T 2id5_A 244 VRHLVYLRFLNLSY--NPISTIEGSM------LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEE 313 (477)
T ss_dssp HTTCTTCCEEECCS--SCCCEECTTS------CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCS-SCCSCCCG
T ss_pred hcCccccCeeECCC--CcCCccChhh------ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCC-CcCceeCH
Confidence 67889999999998 4566655432 35788999999999 466666 44888999999999999 57888877
Q ss_pred CCC--cccccEEEecCchh
Q 035836 321 KGL--PSSLLELWIWDCPL 337 (380)
Q Consensus 321 ~~~--~~~L~~L~l~~c~~ 337 (380)
..+ .++|++|++++++.
T Consensus 314 ~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp GGBSCGGGCCEEECCSSCE
T ss_pred hHcCCCcccCEEEccCCCc
Confidence 543 46899999988764
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2e-22 Score=197.29 Aligned_cols=181 Identities=18% Similarity=0.156 Sum_probs=89.5
Q ss_pred ccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCc
Q 035836 143 LHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNL 220 (380)
Q Consensus 143 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L 220 (380)
+..+++|++|++++ +.+..+|..+..+++|++|++++|......|..+..+++|+.|++++|.....++. ...+++|
T Consensus 274 ~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 44456666666666 34556666665666666666666544444444555666666666666543323322 3456667
Q ss_pred eEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hh-hh
Q 035836 221 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SS-SI 298 (380)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~-~~ 298 (380)
++|++++|........... +..+++|++|++++ | .+..+.... +..+++|++|+++++ .+... +. .+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~-n-~l~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~ 421 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSY-N-EPLSLKTEA------FKECPQLELLDLAFT-RLKVKDAQSPF 421 (606)
T ss_dssp CEEECCSSCCCEEEESTTT--TTTCTTCCEEECCS-C-SCEEECTTT------TTTCTTCSEEECTTC-CEECCTTCCTT
T ss_pred CEEECCCCccccccCcchh--cccCCCCCEEECCC-C-cCCcCCHHH------hcCCccCCeEECCCC-cCCCcccchhh
Confidence 7777766654332210111 55666677777766 2 333222111 134455555555552 33322 11 24
Q ss_pred ccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836 299 VDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP 336 (380)
Q Consensus 299 ~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 336 (380)
.++++|++|++++| .++..+...+ .++|++|++++|.
T Consensus 422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC
Confidence 45555555555553 2333222111 3445555555543
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.6e-23 Score=192.85 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
++|++|+++++. ++.+++ +..+++|++|+++++.....++.. .+..++. |++|+++++.. ....
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~--------L~~L~Ls~n~l-~~~~--- 95 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSS--------LIILKLDYNQF-LQLE--- 95 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTT--------CCEEECTTCTT-CEEC---
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcc-ccccccc--------CCEEeCCCCcc-CccC---
Confidence 578999998864 444433 566888999999888733355544 5667777 99999988642 2220
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhhhHhh--ccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcccc
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER--LDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWEC 157 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 157 (380)
+. .+..++ +|++|++++|.....++.. +..+++|++|++++|......|.. +..+++|++|+++++
T Consensus 96 --~~-----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 96 --TG-----AFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp --TT-----TTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred --hh-----hccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 11 345566 6999999888644445554 778889999999886544444544 677888999988874
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.7e-22 Score=191.42 Aligned_cols=304 Identities=19% Similarity=0.174 Sum_probs=160.7
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
.+++|++|++++| .++.+++...+++|++|+++++. +..++. +..+++ |++|++++|. +..+
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~--------L~~L~L~~n~-l~~~---- 127 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP---LANLTN--------LTGLTLFNNQ-ITDI---- 127 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSC-CCCC----
T ss_pred hhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh---hcCCCC--------CCEEECCCCC-CCCC----
Confidence 4555666666554 33444444455566666665554 443332 334444 6666665542 2222
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhhhHh--------------------hccCCCCccEEeecCCCCCCcccccc
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAE--------------------RLDNNTSLETIDISNCESLKILPSGL 143 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~ 143 (380)
+ ++..++ +|++|++++|. +..++. .+..+++|++|++++|. +..++ .+
T Consensus 128 --~------~~~~l~-~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l 195 (466)
T 1o6v_A 128 --D------PLKNLT-NLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VL 195 (466)
T ss_dssp --G------GGTTCT-TCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred --h------HHcCCC-CCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hh
Confidence 1 233444 46666665552 222221 13344444444444422 22222 23
Q ss_pred cCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 035836 144 HNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL 223 (380)
Q Consensus 144 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 223 (380)
..+++|++|+++++ .+..++. +..+++|+.|++++|. +..+ ..+..+++|+.|++++|.. ...+....+++|+.|
T Consensus 196 ~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L 270 (466)
T 1o6v_A 196 AKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTEL 270 (466)
T ss_dssp GGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEE
T ss_pred ccCCCCCEEEecCC-ccccccc-ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCcc-ccchhhhcCCCCCEE
Confidence 44455555555542 2332222 2334555555555543 2222 2344566666666666533 222234556667777
Q ss_pred EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCC
Q 035836 224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 303 (380)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 303 (380)
++++|.... ... +..+++|+.|++++ +.+..++. . ..+++|++|+++++ .+..++. +..+++
T Consensus 271 ~l~~n~l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~ 332 (466)
T 1o6v_A 271 KLGANQISN-ISP-----LAGLTALTNLELNE--NQLEDISP-I-------SNLKNLTYLTLYFN-NISDISP-VSSLTK 332 (466)
T ss_dssp ECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCSCCGG-G-------GGCTTCSEEECCSS-CCSCCGG-GGGCTT
T ss_pred ECCCCccCc-ccc-----ccCCCccCeEEcCC--CcccCchh-h-------cCCCCCCEEECcCC-cCCCchh-hccCcc
Confidence 776664332 222 44667777777776 34444443 1 36678888888874 5555553 677888
Q ss_pred CceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec
Q 035836 304 LTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD 368 (380)
Q Consensus 304 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (380)
|++|++++| .++.++.-.-.++|+.|++++|...... .+..++.+..+.+.++.+..
T Consensus 333 L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT-------PLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCG-------GGTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccc-------hhhcCCCCCEEeccCCcccC
Confidence 888888874 5666644334568888888887542211 13456677888888887765
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.2e-23 Score=201.96 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=226.0
Q ss_pred ccC-CCCCCCCceEeecCCcCccc------------------ccccccee--cCCCCccccccccceeEeecCCCccccc
Q 035836 22 IAG-VQLPPSLKQLRISDCDNIRT------------------LTVEEGIQ--SSSSSRRYTSYLLEELRICSCRSLTCIF 80 (380)
Q Consensus 22 ~~~-~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 80 (380)
+|. ...+++|++|+++++. +.. +|.. +. .++. |++|++++|.....+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~--------L~~L~L~~n~l~~~~- 265 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKD--------LTDVEVYNCPNLTKL- 265 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTT--------CCEEEEECCTTCSSC-
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCC--------CCEEEecCCcCCccC-
Confidence 443 4558999999999998 776 6665 44 7777 999999987644333
Q ss_pred ccCCCCccccccccCCCCCCccEEEEecCC-Chh-hhHhhccCC------CCccEEeecCCCCCCcccc--cccCCCCCc
Q 035836 81 SKNELPATLESLEVGNLPPSLRSLYVSHCS-KLE-SIAERLDNN------TSLETIDISNCESLKILPS--GLHNLRQLQ 150 (380)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~ 150 (380)
|. .+..++ +|++|++++|. ... .+|..++.+ ++|++|++++|. +..+|. .+.++++|+
T Consensus 266 -----p~-----~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 266 -----PT-----FLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLG 333 (636)
T ss_dssp -----CT-----TTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCC
T ss_pred -----hH-----HHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCC
Confidence 32 356677 69999999997 444 688887766 999999999954 448888 889999999
Q ss_pred EEEccccccce-eccCCCccCCCCCEEeccCCCCcccccccCCCCCC-ccEEEeccCCCCCCCCCC-CC--CCCceEEEe
Q 035836 151 KIEIWECENLV-SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTS-LQELTIGKGVELPSLEED-GL--PTNLHSLEI 225 (380)
Q Consensus 151 ~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~-~~--~~~L~~L~l 225 (380)
+|+++++ .+. .+| .+..+++|+.|++++|. +..+|..+..+++ |+.|++++|... .+|.. .. +++|+.|++
T Consensus 334 ~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 334 MLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp EEECCSC-CCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred EEeCcCC-cCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 9999984 566 788 77778899999999865 4488888888998 999999998644 55543 33 348999999
Q ss_pred cCCCCcchhhhhhccccC-------CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-h
Q 035836 226 DGNMEIWKSTIEWGRGFH-------RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-S 297 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 297 (380)
++|......+. . +. .+++|+.|++++ +.+..++.... ..+++|++|++++ +.++.+|. .
T Consensus 410 s~N~l~~~~p~-~---l~~~~~~~~~~~~L~~L~Ls~--N~l~~lp~~~~------~~l~~L~~L~Ls~-N~l~~i~~~~ 476 (636)
T 4eco_A 410 SYNEIGSVDGK-N---FDPLDPTPFKGINVSSINLSN--NQISKFPKELF------STGSPLSSINLMG-NMLTEIPKNS 476 (636)
T ss_dssp CSSCTTTTTTC-S---SCTTCSSCCCCCCEEEEECCS--SCCCSCCTHHH------HTTCCCSEEECCS-SCCSBCCSSS
T ss_pred cCCcCCCcchh-h---hcccccccccCCCCCEEECcC--CccCcCCHHHH------ccCCCCCEEECCC-CCCCCcCHHH
Confidence 99875443322 1 33 567999999998 46667776541 3578999999999 57778876 3
Q ss_pred hccC-------CCCceEeeecCCCCcccCCCC---CcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEE------
Q 035836 298 IVDL-------QNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSI------ 361 (380)
Q Consensus 298 ~~~~-------~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~------ 361 (380)
+... ++|++|++++ +.++.+|... -.++|++|++++|..-. ....+..++.+..+.+
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~------ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYNSFSK------FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp SEETTEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSSCCSS------CCCGGGGCSSCCEEECCSCBCT
T ss_pred hccccccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCCCCCC------cChhhhcCCCCCEEECCCCccc
Confidence 3332 3999999999 5677888742 45799999999975432 2223445778888888
Q ss_pred CceeeecCCCCCC
Q 035836 362 DYKWVFDDDPTED 374 (380)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (380)
.++.+...+|...
T Consensus 550 s~N~l~~~~p~~l 562 (636)
T 4eco_A 550 QGNRTLREWPEGI 562 (636)
T ss_dssp TCCBCCCCCCTTG
T ss_pred ccCcccccChHHH
Confidence 3455666666544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.6e-23 Score=199.15 Aligned_cols=115 Identities=23% Similarity=0.188 Sum_probs=62.1
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeeecCCCCcccC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLIDCPKLKYFP 319 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~ 319 (380)
+..+++|+.|++++ |......+... ..+++|++|++++| .+. .+|..+..+++|++|++++| .++.++
T Consensus 417 ~~~l~~L~~L~l~~-n~l~~~~~~~~-------~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 417 FLSLRNLIYLDISH-THTRVAFNGIF-------NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp TTTCTTCCEEECTT-SCCEECCTTTT-------TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred hhcCCCCCEEeCcC-Ccccccchhhh-------hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC
Confidence 45566666666665 32222222222 45666777777764 333 35556666777777777763 455543
Q ss_pred CCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeecCCC
Q 035836 320 EKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDP 371 (380)
Q Consensus 320 ~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (380)
...+ .++|++|++++|... ......+..++.+..+.+.++++..++|
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhhhcccCCCEEeCCCCcCC-----CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 3222 356777777765321 1222234455666677777666655544
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.1e-22 Score=185.26 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=189.6
Q ss_pred CCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccccc
Q 035836 5 NSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSK 82 (380)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (380)
+++++.|++.++ .++.+|. +..+++|++|+++++. +..++.. .+..++. |++|+++++. +..+.
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~-- 109 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHT--------IQKLYMGFNA-IRYLP-- 109 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCCCC--
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChh-hccCCCC--------cCEEECCCCC-CCcCC--
Confidence 567888888775 4566665 3457888888888876 6666654 5666666 8888888764 32220
Q ss_pred CCCCccccccccCCCCCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836 83 NELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV 161 (380)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 161 (380)
+. .+..++ +|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|+++++ .+.
T Consensus 110 ---~~-----~~~~l~-~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 110 ---PH-----VFQNVP-LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp ---TT-----TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCS
T ss_pred ---HH-----HhcCCC-CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCC
Confidence 11 244556 58888888774 5555554 467788888888875443333444667788888888773 444
Q ss_pred eccCCCccCCCCCEEeccCCCC------------------cccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 035836 162 SFTEGGLPCAKLTRLDIYDCER------------------LEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL 223 (380)
Q Consensus 162 ~l~~~~~~~~~L~~L~l~~~~~------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 223 (380)
.++ ...+++|+.+++++|.. +..++.. ..++|+.|++++|.. +..+....+++|++|
T Consensus 179 ~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 179 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNL-TDTAWLLNYPGLVEV 253 (390)
T ss_dssp BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCC-CCCGGGGGCTTCSEE
T ss_pred ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCC-cccHHHcCCCCccEE
Confidence 432 22234555555544321 2222221 245788888887743 334445667888888
Q ss_pred EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCC
Q 035836 224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 303 (380)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 303 (380)
++++|......+ .. +..+++|+.|++++ +.+..++... ..+++|++|++++ +.+..+|..+..+++
T Consensus 254 ~Ls~n~l~~~~~-~~---~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 254 DLSYNELEKIMY-HP---FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDR 319 (390)
T ss_dssp ECCSSCCCEEES-GG---GTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTT
T ss_pred ECCCCcCCCcCh-hH---ccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCC-CcceecCccccccCc
Confidence 888876443322 22 66788899999987 4666666544 4678899999998 477888877888899
Q ss_pred CceEeeecCCCCcccCCCCCcccccEEEecCchhHHH
Q 035836 304 LTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE 340 (380)
Q Consensus 304 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 340 (380)
|++|++++ +.++.++. ...++|++|++++|+.-..
T Consensus 320 L~~L~L~~-N~i~~~~~-~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 320 LENLYLDH-NSIVTLKL-STHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSEEECCS-SCCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCC-CccceeCc-hhhccCCEEEcCCCCccch
Confidence 99999998 55777764 3356899999998875554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=5e-22 Score=187.64 Aligned_cols=318 Identities=16% Similarity=0.130 Sum_probs=203.2
Q ss_pred EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836 10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL 89 (380)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 89 (380)
.++..++ .++.+|. ..++|++|+++++. +..++.. .+..+++ |++|+++++.....+
T Consensus 14 ~~~c~~~-~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~~~~~i---------- 70 (455)
T 3v47_A 14 NAICINR-GLHQVPE--LPAHVNYVDLSLNS-IAELNET-SFSRLQD--------LQFLKVEQQTPGLVI---------- 70 (455)
T ss_dssp EEECCSS-CCSSCCC--CCTTCCEEECCSSC-CCEECTT-TTSSCTT--------CCEEECCCCSTTCEE----------
T ss_pred ccCcCCC-CcccCCC--CCCccCEEEecCCc-cCcCChh-HhccCcc--------ccEEECcCCcccceE----------
Confidence 3444443 5677776 56899999999997 7777555 5778888 999999987533222
Q ss_pred cccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc--ccCCCCCcEEEccccccceec-cCC
Q 035836 90 ESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG--LHNLRQLQKIEIWECENLVSF-TEG 166 (380)
Q Consensus 90 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l-~~~ 166 (380)
+.-.+..++ +|++|++++|......|..+..+++|++|++++|......+.. +..+++|++|+++++ .+..+ +..
T Consensus 71 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 148 (455)
T 3v47_A 71 RNNTFRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148 (455)
T ss_dssp CTTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCG
T ss_pred Ccccccccc-cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCccc
Confidence 111356677 6999999998754455888999999999999997655444444 778999999999985 55655 443
Q ss_pred -CccCCCCCEEeccCCCCcccccccCCC----------------------------------CCCccEEEeccCCCCCCC
Q 035836 167 -GLPCAKLTRLDIYDCERLEALPKGLHN----------------------------------LTSLQELTIGKGVELPSL 211 (380)
Q Consensus 167 -~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------------------------~~~L~~L~l~~~~~~~~~ 211 (380)
+..+++|++|++++|......+..+.. +++|+.|++++|......
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 567899999999987654444433322 245666666655321100
Q ss_pred C---------------------------------C-----C--CCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836 212 E---------------------------------E-----D--GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL 251 (380)
Q Consensus 212 ~---------------------------------~-----~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 251 (380)
+ . . ...++|+.|++++|......+ .+ +..+++|++|
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~---~~~l~~L~~L 304 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SV---FSHFTDLEQL 304 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TT---TTTCTTCCEE
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hh---cccCCCCCEE
Confidence 0 0 0 012356666666554332211 11 5567777777
Q ss_pred eeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCCCCC--ccccc
Q 035836 252 AISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLL 328 (380)
Q Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~ 328 (380)
++++ +.+..++... +..+++|++|+++++ .++.+ +..+.++++|++|++++ +.++.++...+ .++|+
T Consensus 305 ~Ls~--n~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 305 TLAQ--NEINKIDDNA------FWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp ECTT--SCCCEECTTT------TTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred ECCC--CcccccChhH------hcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC-CcccccChhhcccccccc
Confidence 7776 3444443211 246677888888874 55555 34677778888888877 45666544333 46788
Q ss_pred EEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeecCCC
Q 035836 329 ELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDP 371 (380)
Q Consensus 329 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (380)
+|++++|..- ......+..++.+..+.+.++++..++|
T Consensus 375 ~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccc-----cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888776422 1222334556677777777777766655
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5e-23 Score=199.15 Aligned_cols=62 Identities=23% Similarity=0.127 Sum_probs=31.4
Q ss_pred cCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836 300 DLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF 367 (380)
Q Consensus 300 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (380)
.+++|++|++++ +.++.+|.....++|+.|++++|... ....+.+..++.+..+.+.++++.
T Consensus 449 ~l~~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 449 FLPRLQELYISR-NKLKTLPDASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCTTCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCChhcEEECCC-CccCcCCCcccCccCCEEecCCCccC-----CcCHHHHhcCcccCEEEecCCCcc
Confidence 455566666655 34555555444456666666654321 112222344555666666665554
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.7e-22 Score=191.03 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=96.6
Q ss_pred cCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCC--CCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836 169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELP--SLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245 (380)
Q Consensus 169 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 245 (380)
.+++|++|++++|.....+|..+..+++|+.|++++|.... .++ ....+++|++|++++|......+... +..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---~~~l 398 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---CSWT 398 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---CCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---hccC
Confidence 35566666666655544455566666677777776664322 111 12456667777777665443233221 4556
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL-- 323 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-- 323 (380)
++|+.|++++ |.....++.. .+++|++|++++ +.++.+|..+..+++|++|++++ +.++.+|...+
T Consensus 399 ~~L~~L~Ls~-N~l~~~~~~~---------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 399 KSLLSLNMSS-NILTDTIFRC---------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDR 466 (520)
T ss_dssp TTCCEEECCS-SCCCGGGGGS---------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred ccCCEEECcC-CCCCcchhhh---------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCC-CcCCccCHHHhcc
Confidence 6777777776 3322333321 226888888888 47778888777889999999988 56778877533
Q ss_pred cccccEEEecCchh
Q 035836 324 PSSLLELWIWDCPL 337 (380)
Q Consensus 324 ~~~L~~L~l~~c~~ 337 (380)
.++|++|++++|+.
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 46888999887764
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=6.1e-22 Score=188.17 Aligned_cols=273 Identities=18% Similarity=0.187 Sum_probs=210.4
Q ss_pred CCCCCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI 79 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (380)
|..+++|++|+|++| .+..+.+ +..+++|++|+++++. +..++.. .+..++. |+.|+++++.. ..+
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~n~i-~~~ 119 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG-VFTGLSN--------LTKLDISENKI-VIL 119 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT-SSTTCTT--------CCEEECTTSCC-CEE
T ss_pred ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcc-cccCCCC--------CCEEECCCCcc-ccC
Confidence 678999999999997 5555533 5668999999999997 8888876 6777888 99999998753 222
Q ss_pred cccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccc
Q 035836 80 FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECE 158 (380)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 158 (380)
.+. .+..++ +|++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|+.|++.++
T Consensus 120 ---------~~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n- 186 (477)
T 2id5_A 120 ---------LDY-MFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL- 186 (477)
T ss_dssp ---------CTT-TTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC-
T ss_pred ---------Chh-Hccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC-
Confidence 111 355667 6999999998644455668889999999999995 455555 45788999999999984
Q ss_pred cceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCcchhh
Q 035836 159 NLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEIWKST 235 (380)
Q Consensus 159 ~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~ 235 (380)
.+..++. .+..+++|+.|++++|.....++.......+|+.|++++|. ++.++ ....+++|+.|++++|... ...
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~ 264 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS-TIE 264 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCC-EEC
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCC-ccC
Confidence 5555554 56678899999999998888888766666799999999984 44454 2367899999999998744 333
Q ss_pred hhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
... +..+++|+.|++++ +.+..+.... +..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 265 ~~~---~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSM---LHELLRLQEIQLVG--GQLAVVEPYA------FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTS---CTTCTTCCEEECCS--SCCSEECTTT------BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hhh---ccccccCCEEECCC--CccceECHHH------hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 222 77899999999998 4555553322 35789999999999 57888876 67889999999999854
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.2e-21 Score=183.75 Aligned_cols=292 Identities=18% Similarity=0.201 Sum_probs=208.9
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS 81 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (380)
++.+++|++|++++| .+..+++...+++|++|++++|. +..++. +..++. |+.|+++++. +..+..
T Consensus 86 ~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~--------L~~L~l~~n~-l~~~~~ 151 (466)
T 1o6v_A 86 LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITDIDP---LKNLTN--------LNRLELSSNT-ISDISA 151 (466)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GTTCTT--------CSEEEEEEEE-ECCCGG
T ss_pred hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCCChH---HcCCCC--------CCEEECCCCc-cCCChh
Confidence 456788888888886 44555556778888888888886 666552 455666 8888877653 222100
Q ss_pred ------------cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCC
Q 035836 82 ------------KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQL 149 (380)
Q Consensus 82 ------------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 149 (380)
.+... .+. ++..++ +|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|
T Consensus 152 ~~~l~~L~~L~l~~~~~-~~~--~~~~l~-~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L 223 (466)
T 1o6v_A 152 LSGLTSLQQLSFGNQVT-DLK--PLANLT-TLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNL 223 (466)
T ss_dssp GTTCTTCSEEEEEESCC-CCG--GGTTCT-TCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTC
T ss_pred hccCCcccEeecCCccc-Cch--hhccCC-CCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCC
Confidence 00000 011 355667 69999999985 55443 47789999999999964 444433 6679999
Q ss_pred cEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836 150 QKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 150 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 229 (380)
+.|+++++ .+..++ .+..+++|+.|++++|.... ++. +..+++|+.|++++|.. ...+....+++|+.|++++|.
T Consensus 224 ~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 224 DELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQ 298 (466)
T ss_dssp CEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC
T ss_pred CEEECCCC-Ccccch-hhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCc
Confidence 99999985 565553 45668899999999975443 333 77899999999999854 444446788999999999986
Q ss_pred CcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEee
Q 035836 230 EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQL 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 309 (380)
... ... +..+++|+.|++++ | .+..++. . ..+++|++|+++++ .+..++ .+.++++|+.|++
T Consensus 299 l~~-~~~-----~~~l~~L~~L~L~~-n-~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 299 LED-ISP-----ISNLKNLTYLTLYF-N-NISDISP-V-------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSA 360 (466)
T ss_dssp CSC-CGG-----GGGCTTCSEEECCS-S-CCSCCGG-G-------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred ccC-chh-----hcCCCCCCEEECcC-C-cCCCchh-h-------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence 443 332 66789999999998 4 4555443 2 37789999999995 777775 7889999999999
Q ss_pred ecCCCCcccCCCCCcccccEEEecCchhHH
Q 035836 310 IDCPKLKYFPEKGLPSSLLELWIWDCPLIE 339 (380)
Q Consensus 310 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 339 (380)
++| .++.++.....++|+.|++++|+...
T Consensus 361 ~~n-~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHN-QISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSS-CCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCC-ccCccchhhcCCCCCEEeccCCcccC
Confidence 995 56665444446789999999986543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=4.3e-22 Score=199.58 Aligned_cols=302 Identities=16% Similarity=0.185 Sum_probs=169.7
Q ss_pred CCCCCccEEEEecCCCCccccC-CCCCCCCceEeecCCcCcc--ccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836 3 DTNSSLEILEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIR--TLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI 79 (380)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (380)
..+++|++|+|++|.....+|. +..+++|+.|+++++..+. .+|.. +..+.. .-..+++|+.|+++++. +..+
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~--i~~L~~-~~~~l~~L~~L~Ls~N~-L~~i 563 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD--WTRLAD-DEDTGPKIQIFYMGYNN-LEEF 563 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH--HHHHHH-CTTTTTTCCEEECCSSC-CCBC
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH--HHhhhh-cccccCCccEEEeeCCc-CCcc
Confidence 4889999999999877777775 5668999999999986444 35543 232220 00012228899988864 2233
Q ss_pred cccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCC-CcEEEccccc
Q 035836 80 FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ-LQKIEIWECE 158 (380)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 158 (380)
|.. -.+..++ +|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++ |+.|+++++
T Consensus 564 ------p~~---~~l~~L~-~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N- 629 (876)
T 4ecn_A 564 ------PAS---ASLQKMV-KLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN- 629 (876)
T ss_dssp ------CCH---HHHTTCT-TCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-
T ss_pred ------CCh---hhhhcCC-CCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-
Confidence 220 0134455 57777777775 44666 67777777777777743 4466766666776 777777763
Q ss_pred cceeccCCCccCC--CCCEEeccCCCCcc----------------------------cccccC-CCCCCccEEEeccCCC
Q 035836 159 NLVSFTEGGLPCA--KLTRLDIYDCERLE----------------------------ALPKGL-HNLTSLQELTIGKGVE 207 (380)
Q Consensus 159 ~l~~l~~~~~~~~--~L~~L~l~~~~~~~----------------------------~~~~~l-~~~~~L~~L~l~~~~~ 207 (380)
.+..+|..+..++ +|+.|++++|.... .+|..+ ..+++|+.|++++|..
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 4555555443322 36666666554332 222222 2445555555555532
Q ss_pred CCCCCCC-CC--------CCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCC
Q 035836 208 LPSLEED-GL--------PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA 278 (380)
Q Consensus 208 ~~~~~~~-~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (380)
..+|.. .. +++|+.|++++|... .++..+. ...+++|+.|++++ +.+..++... ..++
T Consensus 710 -~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~--~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~ 776 (876)
T 4ecn_A 710 -TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR--ATTLPYLSNMDVSY--NCFSSFPTQP-------LNSS 776 (876)
T ss_dssp -SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS--TTTCTTCCEEECCS--SCCSSCCCGG-------GGCT
T ss_pred -CccChHHhccccccccccCCccEEECCCCCCc-cchHHhh--hccCCCcCEEEeCC--CCCCccchhh-------hcCC
Confidence 233221 11 125666666665433 2222110 12556666666665 3444455444 3556
Q ss_pred CcceEeccc------CCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchh
Q 035836 279 SLTSLWIED------FPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPL 337 (380)
Q Consensus 279 ~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 337 (380)
+|+.|++++ +.....+|..+.++++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 666666654 2223445556666667777777663 44666654 335677777776653
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6.8e-22 Score=196.03 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=166.9
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceecc-CCCccCCCCCEEe
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAKLTRLD 177 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~ 177 (380)
+|+.|++++|......|..+..+++|++|++++|.....+| ..+..+++|+.|+++++. +..++ ..+..+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccch
Confidence 47777777775444556678888899999998865545555 457778899999998854 44443 3555688999999
Q ss_pred ccCCCC--cccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhh----ccccCCCCccce
Q 035836 178 IYDCER--LEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEW----GRGFHRFSSLRR 250 (380)
Q Consensus 178 l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~L~~ 250 (380)
+.+|.. ...+|..+..+++|+.|++++|......+. ...+++|+.|++++|.......... ...+.++++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 988754 246677888899999999998854333222 4678899999999986433211100 001677899999
Q ss_pred eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---ccc
Q 035836 251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSS 326 (380)
Q Consensus 251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~ 326 (380)
|++++ +.+..++... +..+++|++|++++ +.++.+|. .+.++++|++|++++ +.++.++...+ .++
T Consensus 541 L~L~~--N~l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 541 LNLES--NGFDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRN 610 (680)
T ss_dssp EECCS--SCCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTT
T ss_pred EECCC--CCCCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccc
Confidence 99998 4666776532 35788999999988 68888877 578899999999998 57887766432 468
Q ss_pred ccEEEecCchhHHH
Q 035836 327 LLELWIWDCPLIEE 340 (380)
Q Consensus 327 L~~L~l~~c~~l~~ 340 (380)
|+.+++++||..++
T Consensus 611 L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 611 LTELDMRFNPFDCT 624 (680)
T ss_dssp CSEEECTTCCCCBC
T ss_pred cCEEEccCCCcccC
Confidence 99999998887664
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=8.4e-22 Score=192.80 Aligned_cols=290 Identities=16% Similarity=0.126 Sum_probs=203.3
Q ss_pred CccEEEEecCCCCcc-ccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836 7 SLEILEIWVCHSLTY-IAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
+++.+.+.++..+.. ++....+++|+.|++.++. +..++ .+..++. |++|++++|.. ..+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~--------L~~L~l~~n~l-~~l------ 322 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE---DVPKHFK--------WQSLSIIRCQL-KQF------ 322 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC---CCCTTCC--------CSEEEEESCCC-SSC------
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCcc-chhhh---hcccccc--------CCEEEcccccC-ccc------
Confidence 356666644444333 4445567889999998887 66666 3566666 89999988754 333
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccceec
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVSF 163 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~l 163 (380)
| .+ .++ +|++|++++|..+..+ .+..+++|++|++++|..... ++..+..+++|++|+++++ .+..+
T Consensus 323 p------~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 391 (606)
T 3vq2_A 323 P------TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM 391 (606)
T ss_dssp C------CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEE
T ss_pred c------cC-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccc
Confidence 2 22 556 6999999888555444 566788999999988543322 2566778889999999884 57777
Q ss_pred cCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccc
Q 035836 164 TEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (380)
+..+..+++|+.|++++|......+ ..+..+++|+.|++++|......+. ...+++|++|++++|.......+..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--- 468 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--- 468 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh---
Confidence 7777778889999998876555555 4677888999999998865444443 4677889999998886544222222
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
+..+++|+.|++++ | .+..++... +..+++|++|+++++ .+..+ |..+.++++|++|++++ +.++.+|.
T Consensus 469 ~~~l~~L~~L~Ls~-n-~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~ 538 (606)
T 3vq2_A 469 FANTTNLTFLDLSK-C-QLEQISWGV------FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF-NRIETSKG 538 (606)
T ss_dssp CTTCTTCCEEECTT-S-CCCEECTTT------TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT-SCCCCEES
T ss_pred hccCCCCCEEECCC-C-cCCccChhh------hcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC-CcCcccCH
Confidence 67889999999988 4 444443321 257788999999985 55555 66888899999999998 45778777
Q ss_pred C--CCcccccEEEecCchhHH
Q 035836 321 K--GLPSSLLELWIWDCPLIE 339 (380)
Q Consensus 321 ~--~~~~~L~~L~l~~c~~l~ 339 (380)
. .++.+|++|++++|+..+
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCC
T ss_pred hHhhhcccCcEEEccCCCccc
Confidence 4 233469999998876443
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.3e-21 Score=191.41 Aligned_cols=267 Identities=19% Similarity=0.184 Sum_probs=199.8
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS 81 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (380)
+..+++|+.|++.++. +..++....+++|++|++++|. +..++ . + .++. |+.|+++++..+...
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~-l~~lp-~--~-~l~~--------L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQ-LKQFP-T--L-DLPF--------LKSLTLTMNKGSISF-- 344 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCC-CSSCC-C--C-CCSS--------CCEEEEESCSSCEEC--
T ss_pred cccCCCCCEEEecCcc-chhhhhccccccCCEEEccccc-Ccccc-c--C-CCCc--------cceeeccCCcCccch--
Confidence 3467889999998874 4667766778899999999998 57666 3 3 6666 999999988655544
Q ss_pred cCCCCccccccccCCCCCCccEEEEecCCChhh---hHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccc
Q 035836 82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLES---IAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158 (380)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 158 (380)
.+..++ +|++|++++|. +.. ++..+..+++|++|++++| .+..+|..+..+++|+.|+++++
T Consensus 345 -----------~~~~l~-~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n- 409 (606)
T 3vq2_A 345 -----------KKVALP-SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHS- 409 (606)
T ss_dssp -----------CCCCCT-TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTS-
T ss_pred -----------hhccCC-CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCC-
Confidence 566777 59999999885 433 3677788899999999884 46667777888899999999884
Q ss_pred cceeccC--CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchh
Q 035836 159 NLVSFTE--GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKS 234 (380)
Q Consensus 159 ~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~ 234 (380)
.+...+. .+..+++|+.|++++|......|..+..+++|+.|++++|..... .+ ....+++|+.|++++|.....
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 488 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI- 488 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-
Confidence 4554433 556688999999998877777777888889999999998855432 33 346788999999999864433
Q ss_pred hhhhccccCCCCccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCC-CCceEeeecC
Q 035836 235 TIEWGRGFHRFSSLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQ-NLTILQLIDC 312 (380)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c 312 (380)
.+.. +..+++|+.|++++ | .+..+ +... ..+++|++|++++ +.++.+|..+..++ +|++|+++++
T Consensus 489 ~~~~---~~~l~~L~~L~Ls~-N-~l~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 489 SWGV---FDTLHRLQLLNMSH-N-NLLFLDSSHY-------NQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CTTT---TTTCTTCCEEECCS-S-CCSCEEGGGT-------TTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSC
T ss_pred Chhh---hcccccCCEEECCC-C-cCCCcCHHHc-------cCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCC
Confidence 2222 67888999999998 4 44444 4444 5778899999998 46888888788887 5999999885
Q ss_pred C
Q 035836 313 P 313 (380)
Q Consensus 313 ~ 313 (380)
+
T Consensus 556 ~ 556 (606)
T 3vq2_A 556 S 556 (606)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=9.5e-22 Score=185.17 Aligned_cols=273 Identities=18% Similarity=0.180 Sum_probs=143.2
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836 4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN 83 (380)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (380)
.+++|++|+++++ .++.++....+++|++|+++++. +..++ +..++. |+.|+++++. ++.+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~--------L~~L~Ls~N~-l~~~---- 100 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD----LSQNTN--------LTYLACDSNK-LTNL---- 100 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC----CTTCTT--------CSEEECCSSC-CSCC----
T ss_pred HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc----cccCCC--------CCEEECcCCC-Ccee----
Confidence 4678888888886 45556666667888888888886 66654 345555 8888887753 3333
Q ss_pred CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836 84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF 163 (380)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 163 (380)
++..++ +|++|++++|. +..++ +..+++|++|++++| .+..++ +..+++|++|+++++..+..+
T Consensus 101 ---------~~~~l~-~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 101 ---------DVTPLT-KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---------CCTTCT-TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC
T ss_pred ---------ecCCCC-cCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc
Confidence 344555 47777776663 33343 556666666666663 333332 445566666666654444433
Q ss_pred cCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836 164 TEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 243 (380)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (380)
.+..+++|+.|++++|. ++.+| +..+++|+.|++++|.. +.+ ....+++|+.|++++|.... ++ +.
T Consensus 165 --~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l-~~~-~l~~l~~L~~L~Ls~N~l~~-ip------~~ 230 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNI-TKL-DLNQNIQLTFLDCSSNKLTE-ID------VT 230 (457)
T ss_dssp --CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCC-SCC-CCTTCTTCSEEECCSSCCSC-CC------CT
T ss_pred --ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcC-Cee-ccccCCCCCEEECcCCcccc-cC------cc
Confidence 23344555555555542 22232 34444555555544422 111 12334444444444443221 11 22
Q ss_pred CCCccceeeeecC------------------------------CCCCcccccccccccCCCCCCCCcceEecccCCCccc
Q 035836 244 RFSSLRRLAISGC------------------------------DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER 293 (380)
Q Consensus 244 ~~~~L~~L~l~~~------------------------------~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 293 (380)
.+++|+.|+++++ |.....++. ..+++|+.|++++|..+..
T Consensus 231 ~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~---------~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---------EGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC---------TTCTTCCCCCCTTCTTCCE
T ss_pred ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc---------cccccCCEEECCCCcccce
Confidence 3344444444430 222222221 2446677777776654444
Q ss_pred hhh--------hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCch
Q 035836 294 LSS--------SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCP 336 (380)
Q Consensus 294 l~~--------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 336 (380)
+|. .+.++++|++|++++ +.++.++- .-.++|+.|+++++.
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~l-~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNN-TELTELDV-SHNTKLKSLSCVNAH 350 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCCC-TTCTTCSEEECCSSC
T ss_pred eccCCCcceEechhhcccCCEEECCC-Cccccccc-ccCCcCcEEECCCCC
Confidence 432 234445666666665 44555532 234567777776643
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=7.9e-21 Score=184.16 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=92.8
Q ss_pred CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC----CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836 170 CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE----EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245 (380)
Q Consensus 170 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 245 (380)
+++|++|++++|.....+|..+..+++|+.|++++|.. +.++ ....+++|+.|++++|......+... +..+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~l 427 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---CAWA 427 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC---CCCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhh---hcCc
Confidence 45566666666554444555566666666666666532 2221 23455666666666665433222222 4556
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL-- 323 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-- 323 (380)
++|+.|++++ |.....++.. .+++|++|++++ +.++.+|..+..+++|++|++++ +.++.+|...+
T Consensus 428 ~~L~~L~l~~-n~l~~~~~~~---------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 495 (562)
T 3a79_B 428 ESILVLNLSS-NMLTGSVFRC---------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR 495 (562)
T ss_dssp TTCCEEECCS-SCCCGGGGSS---------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred ccCCEEECCC-CCCCcchhhh---------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence 6667777766 3322222221 226888888888 47888888666888999999988 67888877422
Q ss_pred cccccEEEecCchh
Q 035836 324 PSSLLELWIWDCPL 337 (380)
Q Consensus 324 ~~~L~~L~l~~c~~ 337 (380)
.++|+.|++++++.
T Consensus 496 l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 496 LTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCCCEECCSCCB
T ss_pred CCCCCEEEecCCCc
Confidence 56888888887653
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.5e-21 Score=188.83 Aligned_cols=289 Identities=15% Similarity=0.127 Sum_probs=178.4
Q ss_pred CCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccccc
Q 035836 5 NSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSK 82 (380)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (380)
+++++.+++.++ .+..+|. +..+++|+.|+++++. +..++.. .+..++. |+.|+++++. +..+
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~--- 114 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHT--------IQKLYMGFNA-IRYL--- 114 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCCC---
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCC--------CCEEECCCCc-CCCC---
Confidence 345666666664 3444544 2345666666666665 5555543 4455555 6666666653 2222
Q ss_pred CCCCccccccccCCCCCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836 83 NELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV 161 (380)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 161 (380)
+ +. .+..++ +|++|++++|. +..+|.. +..+++|++|++++|......|..+..+++|++|+++++ .+.
T Consensus 115 ---~---~~-~~~~l~-~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 115 ---P---PH-VFQNVP-LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp ---C---TT-TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCS
T ss_pred ---C---HH-HHcCCC-CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCC
Confidence 0 00 234445 46666666663 3344433 456666666666664333333334556666666666653 333
Q ss_pred eccCCCccCC-------------------CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceE
Q 035836 162 SFTEGGLPCA-------------------KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHS 222 (380)
Q Consensus 162 ~l~~~~~~~~-------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 222 (380)
.++ ...++ +|+.|++++|. +..++..+ .++|+.|++++|.. +..+....+++|+.
T Consensus 185 ~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~l-~~~~~l~~l~~L~~ 258 (597)
T 3oja_B 185 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNL-TDTAWLLNYPGLVE 258 (597)
T ss_dssp BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccccc--CCCCCEEECCCCCC-CCChhhccCCCCCE
Confidence 332 12233 45555555432 22232222 35788888888743 33445567889999
Q ss_pred EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCC
Q 035836 223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQ 302 (380)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 302 (380)
|++++|......+ .. +..+++|+.|++++ +.+..++... ..+++|++|++++ +.+..+|..+..++
T Consensus 259 L~Ls~N~l~~~~~-~~---~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~ 324 (597)
T 3oja_B 259 VDLSYNELEKIMY-HP---FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFD 324 (597)
T ss_dssp EECCSSCCCEEES-GG---GTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred EECCCCccCCCCH-HH---hcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCC-CCCCccCcccccCC
Confidence 9999986544322 22 67889999999998 5666666544 4678999999999 57888888888999
Q ss_pred CCceEeeecCCCCcccCCCCCcccccEEEecCchhHHH
Q 035836 303 NLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE 340 (380)
Q Consensus 303 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 340 (380)
+|++|++++ +.++.++.. ..++|+.|++++|+.-..
T Consensus 325 ~L~~L~L~~-N~l~~~~~~-~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 325 RLENLYLDH-NSIVTLKLS-THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCSEEECCS-SCCCCCCCC-TTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCC-CCCCCcChh-hcCCCCEEEeeCCCCCCh
Confidence 999999999 557777643 356899999999876554
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-20 Score=189.42 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=130.3
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCEEec
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLDI 178 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l 178 (380)
+|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..+ +..+..+++|+.|++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEEC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEEC
Confidence 3455555544322233344555556666666653333333344555666666666653 33333 334445566666666
Q ss_pred cCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcc-------------------hhhhhhc
Q 035836 179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIW-------------------KSTIEWG 239 (380)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~ 239 (380)
++|......+..+..+++|+.|++++|.. +.++ .+++|+.|++++|.... .......
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~---~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~ 421 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIH---FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCS---SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHH
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCC-Cccc---CCCCcchhccCCCCcccccccccccceeecccCccccCchhhh
Confidence 66533222233455566666666665532 1111 12233333333222110 0000000
Q ss_pred cccCCCCccceeeeecCCCCCcccccc---------------c---------ccccCCCCCCCCcceEecccCCCccchh
Q 035836 240 RGFHRFSSLRRLAISGCDDDMVSFPLE---------------D---------KRLGTALPLPASLTSLWIEDFPNLERLS 295 (380)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~l~~~~~~---------------~---------~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 295 (380)
+..+++|+.|++++ +.+..++.. . +.....+..+++|++|++++ +.++.++
T Consensus 422 --~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~ 496 (844)
T 3j0a_A 422 --LLRVPHLQILILNQ--NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLP 496 (844)
T ss_dssp --HTTCTTCCEEEEES--CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCC
T ss_pred --hhcCCccceeeCCC--CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC-CcccccC
Confidence 22455666666655 222211110 0 00112245668888888888 4777766
Q ss_pred h-hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec
Q 035836 296 S-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD 368 (380)
Q Consensus 296 ~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (380)
. .+.++++|++|++++ +.++.++...++++|+.|++++|.... .... .++.+..+.+.++++.-
T Consensus 497 ~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~-----~~~~---~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLA-----PNPD---VFVSLSVLDITHNKFIC 561 (844)
T ss_dssp TTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCC-----CCSC---CCSSCCEEEEEEECCCC
T ss_pred hhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCcCCC-----CChh---HhCCcCEEEecCCCccc
Confidence 5 678899999999998 678888887777889999998865322 1222 23456777777776643
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-20 Score=191.49 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCC
Q 035836 195 TSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTA 273 (380)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~ 273 (380)
++|+.|++++|......+ ....+++|+.|++++|....... .. +..+++|+.|++++ +.+..+... .
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~---~~~l~~L~~L~Ls~--N~l~~~~~~------~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EA---FYGLDNLQVLNLSY--NLLGELYSS------N 333 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TT---TTTCSSCCEEEEES--CCCSCCCSC------S
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HH---hcCCCCCCEEECCC--CCCCccCHH------H
Confidence 456666666553322222 12445666666666654332211 11 55666666666666 233333221 1
Q ss_pred CCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCc
Q 035836 274 LPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDC 335 (380)
Q Consensus 274 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 335 (380)
+..+++|++|++++ +.+..++. .+.++++|++|++++ +.++.++. .++|+.|++++|
T Consensus 334 ~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 334 FYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRD-NALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp CSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEET-CCSCCCSS---CCSCSEEEEESC
T ss_pred hcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCC-CCCCcccC---CCCcchhccCCC
Confidence 24566677777766 35555544 466666677777766 34444332 334445554443
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=183.60 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=31.0
Q ss_pred CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC
Q 035836 6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC 73 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 73 (380)
++|++|++++|. +..+++ +..+++|++|+++++. +..+..+ .+..++. |++|+++++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~N 79 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDIS-VFKFNQE--------LEYLDLSHN 79 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGG-GGTTCTT--------CCEEECCSS
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChH-HhhcccC--------CCEEecCCC
Confidence 456666666653 333322 3445666666666665 5554433 3455555 666666654
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-20 Score=183.00 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=81.1
Q ss_pred CCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc-ccccccc
Q 035836 192 HNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS-FPLEDKR 269 (380)
Q Consensus 192 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-~~~~~~~ 269 (380)
..+++|+.|++++|......+ ....+++|+.|++++|........... +..+++|+.|++++ + .+.. ++...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~l~~L~~L~l~~-N-~l~~~~~~~~-- 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM--TKNMSSLETLDVSL-N-SLNSHAYDRT-- 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT--TTTCTTCCEEECTT-S-CCBSCCSSCC--
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh--hcCCCCCCEEECCC-C-cCCCccChhh--
Confidence 345556666666554333222 224556666666666543321111111 45566666666666 2 3332 44321
Q ss_pred ccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCcccCCCCC-cccccEEEecCchhHHHHhhccCC
Q 035836 270 LGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYFPEKGL-PSSLLELWIWDCPLIEEKCRKDGG 347 (380)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~ 347 (380)
+..+++|++|+++++ .++ ..+..+. ++|++|++++ +.++.+|.... .++|++|++++|..- . ...
T Consensus 424 ----~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l~-~----l~~ 490 (562)
T 3a79_B 424 ----CAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLK-S----VPD 490 (562)
T ss_dssp ----CCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCCC-C----CCT
T ss_pred ----hcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCCCCC-C----CCH
Confidence 235566777777763 332 2222221 5777777777 46666665322 457777777776432 1 111
Q ss_pred CCCccccCcCeeEECceeee
Q 035836 348 QYWNLLTHIPYVSIDYKWVF 367 (380)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ 367 (380)
..+..++++..+.+.++++.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBC
T ss_pred HHHhcCCCCCEEEecCCCcC
Confidence 12445566667777666654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.7e-21 Score=186.33 Aligned_cols=287 Identities=15% Similarity=0.156 Sum_probs=203.9
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS 107 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 107 (380)
+++++.|++.++. +..+|.. .+..++. |+.|+++++. +..+ + +. .+..++ +|++|+++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~-~~~~l~~--------L~~L~L~~n~-l~~~------~---~~-~~~~l~-~L~~L~L~ 107 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAA-LLDSFRQ--------VELLNLNDLQ-IEEI------D---TY-AFAYAH-TIQKLYMG 107 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTH-HHHHCCC--------CSEEECTTSC-CCEE------C---TT-TTTTCT-TCCEEECC
T ss_pred CCCceEEEeeCCC-CCCcCHH-HHccCCC--------CcEEECCCCC-CCCC------C---hH-HhcCCC-CCCEEECC
Confidence 6889999999987 8888876 6778888 9999999874 4333 1 11 355666 69999999
Q ss_pred cCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc
Q 035836 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE 185 (380)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~ 185 (380)
+|......|..++.+++|++|++++| .+..+|.. +..+++|++|+++++ .+..+++ .+..+++|++|++++|...
T Consensus 108 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~- 184 (597)
T 3oja_B 108 FNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT- 184 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC-
Confidence 99644445556799999999999995 56677765 578999999999995 5665554 5677899999999987543
Q ss_pred cccccCCCCCCccEEEeccCCC------------------CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836 186 ALPKGLHNLTSLQELTIGKGVE------------------LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 247 (380)
Q Consensus 186 ~~~~~l~~~~~L~~L~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (380)
.++ +..+++|+.|++++|.. +..++ ...+++|+.|++++|.... .. + +..+++
T Consensus 185 ~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~-~~--~---l~~l~~ 255 (597)
T 3oja_B 185 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD-TA--W---LLNYPG 255 (597)
T ss_dssp BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCC-CG--G---GGGCTT
T ss_pred CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCC-Ch--h---hccCCC
Confidence 222 23344555555544421 11111 1234678888888876443 22 1 678899
Q ss_pred cceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcc
Q 035836 248 LRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPS 325 (380)
Q Consensus 248 L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 325 (380)
|+.|++++ | .+..+ +..+ ..+++|++|++++ +.+..+|..+..+++|++|++++ +.++.+|.. ...+
T Consensus 256 L~~L~Ls~-N-~l~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~ 324 (597)
T 3oja_B 256 LVEVDLSY-N-ELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFD 324 (597)
T ss_dssp CSEEECCS-S-CCCEEESGGG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred CCEEECCC-C-ccCCCCHHHh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCC
Confidence 99999998 3 44444 4444 5788999999998 58888887778899999999998 457676652 1256
Q ss_pred cccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836 326 SLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF 367 (380)
Q Consensus 326 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (380)
+|+.|++++|.... ..+..++.+..+.+.++++.
T Consensus 325 ~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 325 RLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCCCC
Confidence 89999999986422 12445667888888887764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.8e-20 Score=176.42 Aligned_cols=265 Identities=16% Similarity=0.213 Sum_probs=154.3
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS 81 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (380)
++.+++|++|++++| .++.++ ...+++|++|+++++. +..++ +..++. |+.|+++++. ++.+
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~--------L~~L~L~~N~-l~~l-- 121 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD----VTPLTK--------LTYLNCDTNK-LTKL-- 121 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC----CTTCTT--------CCEEECCSSC-CSCC--
T ss_pred hcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee----cCCCCc--------CCEEECCCCc-CCee--
Confidence 456788899999887 455554 6667888888888887 66553 445556 8888887763 3333
Q ss_pred cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc---------------------cc
Q 035836 82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI---------------------LP 140 (380)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------~~ 140 (380)
++..++ +|++|++++|. +..+ .++.+++|++|++++|..+.. +|
T Consensus 122 -----------~~~~l~-~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 122 -----------DVSQNP-LLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp -----------CCTTCT-TCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred -----------cCCCCC-cCCEEECCCCc-ccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 233444 35555555543 2222 144444555555554433333 33
Q ss_pred ccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCc
Q 035836 141 SGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNL 220 (380)
Q Consensus 141 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 220 (380)
+..+++|+.|++++ +.+..+ .+..+++|+.|++++|.. +.+| +..+++|+.|++++|.. +..+ ...+++|
T Consensus 187 --l~~l~~L~~L~l~~-N~l~~~--~l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N~l-~~~~-~~~l~~L 256 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDT-NNITKL--DLNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPL-TELD-VSTLSKL 256 (457)
T ss_dssp --CTTCTTCCEEECCS-SCCSCC--CCTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCTTC
T ss_pred --cccCCCCCEEECcC-CcCCee--ccccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCCcC-CCcC-HHHCCCC
Confidence 33445555555544 233333 133455666666665432 2344 55566666666666532 2222 2233444
Q ss_pred eEEE----------ecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccC-CCCCCCCcceEecccCC
Q 035836 221 HSLE----------IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGT-ALPLPASLTSLWIEDFP 289 (380)
Q Consensus 221 ~~L~----------l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 289 (380)
+.|+ +++|......+ +..+++|+.|++++ |..+..++.....+.. .+...++|++|++++ +
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~-n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N 328 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIKELDVTH-NTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-T 328 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCCCCCCTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-C
T ss_pred CEEeccCCCCCEEECCCCccCCccc------ccccccCCEEECCC-CcccceeccCCCcceEechhhcccCCEEECCC-C
Confidence 4333 33333222211 45678999999999 7777777653322221 245668899999998 5
Q ss_pred CccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 290 NLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 290 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
.++.++ +.++++|+.|++++ +.++.++.
T Consensus 329 ~l~~l~--l~~l~~L~~L~l~~-N~l~~l~~ 356 (457)
T 3bz5_A 329 ELTELD--VSHNTKLKSLSCVN-AHIQDFSS 356 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCS-SCCCBCTT
T ss_pred cccccc--cccCCcCcEEECCC-CCCCCccc
Confidence 777764 88899999999998 67776543
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.2e-20 Score=185.23 Aligned_cols=264 Identities=14% Similarity=0.073 Sum_probs=157.6
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCC----------------------------CCCcccccccC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE----------------------------SLKILPSGLHN 145 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------------------~~~~~~~~~~~ 145 (380)
+..++ +|++|++++|......+..+..+++|++|++++|. .....|..+..
T Consensus 325 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 33445 47777777664333344456666666666666542 11112333444
Q ss_pred CCCCcEEEccccccceecc-CCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCC--CCCC-CCCCCCCce
Q 035836 146 LRQLQKIEIWECENLVSFT-EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVEL--PSLE-EDGLPTNLH 221 (380)
Q Consensus 146 l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~-~~~~~~~L~ 221 (380)
+++|+.|+++++.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|... ...+ ....+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 5566666665532222333 23334556666666665443333445556666777776665421 2222 235678888
Q ss_pred EEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc--cccCCCCCCCCcceEecccCCCccchhh-hh
Q 035836 222 SLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK--RLGTALPLPASLTSLWIEDFPNLERLSS-SI 298 (380)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~ 298 (380)
.|++++|... ...... +.++++|+.|++++ +.+..++.... .....+..+++|++|++++ +.++.+|. .+
T Consensus 484 ~L~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~ 556 (680)
T 1ziw_A 484 ILDLSNNNIA-NINDDM---LEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF 556 (680)
T ss_dssp EEECCSSCCC-CCCTTT---TTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred EEECCCCCCC-cCChhh---hccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc
Confidence 8888887643 333322 66788889999987 45555432110 0011245678999999998 57888877 68
Q ss_pred ccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCc-cccCcCeeEECceeeecCCC
Q 035836 299 VDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWN-LLTHIPYVSIDYKWVFDDDP 371 (380)
Q Consensus 299 ~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 371 (380)
.++++|++|++++ +.++.++...+ .++|+.|++++|..-. .....+. .++.+..+.+.++++.-+.+
T Consensus 557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCB-----CCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCc-----cChhHhcccccccCEEEccCCCcccCCc
Confidence 8999999999987 78888887654 4789999999873211 1111111 35577888888887766554
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.1e-21 Score=186.56 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=47.9
Q ss_pred CCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchh
Q 035836 275 PLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPL 337 (380)
Q Consensus 275 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~ 337 (380)
..+++|++|++++ +.++.+|. ...+++|++|++++ +.++.++...+ .++|+.|++++|+.
T Consensus 448 ~~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 448 LFLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCChhcEEECCC-CccCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCCc
Confidence 3678899999998 57788886 46789999999999 57888776433 57899999988763
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.5e-20 Score=168.38 Aligned_cols=287 Identities=14% Similarity=0.188 Sum_probs=205.0
Q ss_pred CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836 30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC 109 (380)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 109 (380)
+++.++++++. +..+|.. . .+. ++.|+++++. ++.+ +. . .+..++ +|++|++++|
T Consensus 32 ~l~~l~~~~~~-l~~lp~~-~---~~~--------l~~L~L~~n~-i~~~------~~---~-~~~~l~-~L~~L~L~~n 86 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKD-L---PPD--------TALLDLQNNK-ITEI------KD---G-DFKNLK-NLHTLILINN 86 (330)
T ss_dssp ETTEEECTTSC-CCSCCCS-C---CTT--------CCEEECCSSC-CCCB------CT---T-TTTTCT-TCCEEECCSS
T ss_pred CCeEEEecCCC-ccccCcc-C---CCC--------CeEEECCCCc-CCEe------Ch---h-hhccCC-CCCEEECCCC
Confidence 78888888876 7777654 1 134 9999999864 4433 11 0 355667 6999999998
Q ss_pred CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc--c
Q 035836 110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE--A 186 (380)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~--~ 186 (380)
......|..+..+++|++|++++ +.+..+|..+. ++|++|+++++ .+..++. .+..+++|+.|++++|.... .
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 87 KISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred cCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 64444478889999999999998 45667776653 79999999984 5665554 34568899999999876532 4
Q ss_pred ccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccc
Q 035836 187 LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE 266 (380)
Q Consensus 187 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~ 266 (380)
.+..+..+++|+.|++++|.. +.++.. .+++|++|++++|.... ..+.. +..+++|+.|++++ +.+..++..
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l-~~l~~~-~~~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~Ls~--n~l~~~~~~ 234 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNI-TTIPQG-LPPSLTELHLDGNKITK-VDAAS---LKGLNNLAKLGLSF--NSISAVDNG 234 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCC-CSCCSS-CCTTCSEEECTTSCCCE-ECTGG---GTTCTTCCEEECCS--SCCCEECTT
T ss_pred ChhhccCCCCcCEEECCCCcc-ccCCcc-ccccCCEEECCCCcCCc-cCHHH---hcCCCCCCEEECCC--CcCceeChh
Confidence 456778899999999998853 444432 34899999999987443 32222 77899999999998 455555542
Q ss_pred cccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--------cccccEEEecCchhH
Q 035836 267 DKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--------PSSLLELWIWDCPLI 338 (380)
Q Consensus 267 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l 338 (380)
. +..+++|++|++++ +.++.+|..+..+++|++|++++ +.++.++...+ ..+++.+++.+++..
T Consensus 235 ~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 235 S------LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp T------GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred h------ccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCccc
Confidence 2 24678999999999 58889988899999999999999 67888876444 257889999998753
Q ss_pred HHHhhccCCCCCccccCcCeeEECce
Q 035836 339 EEKCRKDGGQYWNLLTHIPYVSIDYK 364 (380)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (380)
.. ......+.....+..+.+.++
T Consensus 307 ~~---~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 307 YW---EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GG---GSCGGGGTTCCCGGGEEC---
T ss_pred cc---ccCccccccccceeEEEeccc
Confidence 31 122234555566666666543
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.2e-21 Score=173.96 Aligned_cols=217 Identities=22% Similarity=0.257 Sum_probs=117.3
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
++++|++++|. +..+|..+..+++|++|++++| .+..+|..+..+++|++|++++ +.+..+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECC
Confidence 35555555553 4455555555555555555553 2335555555555555555555 2344555555555555555555
Q ss_pred CCCCcccccccCC---------CCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 180 DCERLEALPKGLH---------NLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 180 ~~~~~~~~~~~l~---------~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
+|.....+|..+. ++++|+.|++++|.. +.+|. ...+++|++|++++|........ +..+++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-----l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPA-----IHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGG-----GGGCTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchh-----hccCCCCC
Confidence 5555555554333 255666666665532 23332 24455666666666543321111 44566666
Q ss_pred eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCccccc
Q 035836 250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLL 328 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~ 328 (380)
+|++++ |.....++... ..+++|++|++++|.....+|..+.++++|++|++++|+.+..+|.. .-.++++
T Consensus 233 ~L~Ls~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 233 ELDLRG-CTALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTT-CTTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECcC-CcchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 666666 55555555444 45566666666666666666666666666666666666666666552 1134555
Q ss_pred EEEec
Q 035836 329 ELWIW 333 (380)
Q Consensus 329 ~L~l~ 333 (380)
.+++.
T Consensus 305 ~l~l~ 309 (328)
T 4fcg_A 305 IILVP 309 (328)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 55554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.1e-20 Score=171.76 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=203.1
Q ss_pred CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
.+++++.|++.++. ++.++.. .+..+++ |+.|+++++. +..+. +. .+..++ +|++|++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~-~~~~l~~--------L~~L~L~~n~-i~~~~-----~~-----~~~~l~-~L~~L~L 100 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAA-LLDSFRQ--------VELLNLNDLQ-IEEID-----TY-----AFAYAH-TIQKLYM 100 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTH-HHHHCCC--------CSEEECTTSC-CCEEC-----TT-----TTTTCT-TCCEEEC
T ss_pred ccCCceEEEecCCc-hhhCChh-Hhccccc--------CcEEECCCCc-ccccC-----hh-----hccCCC-CcCEEEC
Confidence 36899999999997 8888876 6788888 9999999874 33330 00 345666 6999999
Q ss_pred ecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCc
Q 035836 107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERL 184 (380)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~ 184 (380)
++|......|..+..+++|++|++++| .+..+|.. +..+++|++|+++++ .+..++. .+..+++|++|++++|...
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC
Confidence 998644444566889999999999994 66677766 478999999999984 5666654 4667899999999987543
Q ss_pred ccccccCCCCCCccEEEeccCCC------------------CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836 185 EALPKGLHNLTSLQELTIGKGVE------------------LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS 246 (380)
Q Consensus 185 ~~~~~~l~~~~~L~~L~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (380)
.++ +..+++|+.|+++++.. +..++ ...+++|+.|++++|..... . + +..++
T Consensus 179 -~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~~-~--~---l~~l~ 248 (390)
T 3o6n_A 179 -HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDT-A--W---LLNYP 248 (390)
T ss_dssp -BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCCC-G--G---GGGCT
T ss_pred -ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCccc-H--H---HcCCC
Confidence 222 23344555555544321 11121 12346788888888764432 2 1 66788
Q ss_pred ccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCc
Q 035836 247 SLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLP 324 (380)
Q Consensus 247 ~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~ 324 (380)
+|++|++++ +.+..+ +... ..+++|++|++++ +.++.++..+..+++|++|++++| .++.++.. ...
T Consensus 249 ~L~~L~Ls~--n~l~~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l 317 (390)
T 3o6n_A 249 GLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 317 (390)
T ss_dssp TCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH
T ss_pred CccEEECCC--CcCCCcChhHc-------cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCcccccc
Confidence 999999998 345444 3333 5778999999998 578888777778899999999985 67776552 124
Q ss_pred ccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836 325 SSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF 367 (380)
Q Consensus 325 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (380)
++|++|++++|+... . ....++.+..+.+.++++.
T Consensus 318 ~~L~~L~L~~N~i~~-----~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 318 DRLENLYLDHNSIVT-----L---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TTCSEEECCSSCCCC-----C---CCCTTCCCSEEECCSSCEE
T ss_pred CcCCEEECCCCccce-----e---CchhhccCCEEEcCCCCcc
Confidence 689999999876322 1 2344567888888887765
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=9.5e-21 Score=170.84 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=182.3
Q ss_pred cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccccc
Q 035836 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLH 144 (380)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (380)
++.|+++++. +..+ |. .++.++ +|++|++++|. +..+|..+..+++|++|++++| .+..+|..+.
T Consensus 83 l~~L~L~~n~-l~~l------p~-----~l~~l~-~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~ 147 (328)
T 4fcg_A 83 RVALELRSVP-LPQF------PD-----QAFRLS-HLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIA 147 (328)
T ss_dssp CCEEEEESSC-CSSC------CS-----CGGGGT-TCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGG
T ss_pred eeEEEccCCC-chhc------Ch-----hhhhCC-CCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHh
Confidence 9999999864 3333 32 244566 69999999986 5588888999999999999995 5558898899
Q ss_pred CCCCCcEEEccccccceeccCCCcc---------CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCC
Q 035836 145 NLRQLQKIEIWECENLVSFTEGGLP---------CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDG 215 (380)
Q Consensus 145 ~l~~L~~L~l~~~~~l~~l~~~~~~---------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 215 (380)
.+++|++|++++|+....+|..+.. +++|++|++++|. ++.+|..+..+++|+.|++++|......+...
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 9999999999998888888876654 8899999999974 45888889999999999999986544333456
Q ss_pred CCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh
Q 035836 216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS 295 (380)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 295 (380)
.+++|+.|++++|......+. . +..+++|+.|++++ |.....++... ..+++|++|++++|+.+..+|
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~-~---~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPP-I---FGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCC-C---TTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCCEEECTTCTTCCCCC
T ss_pred cCCCCCEEECcCCcchhhhHH-H---hcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCCEEeCCCCCchhhcc
Confidence 789999999999987765543 1 67899999999999 78888888766 578999999999999999999
Q ss_pred hhhccCCCCceEeeec
Q 035836 296 SSIVDLQNLTILQLID 311 (380)
Q Consensus 296 ~~~~~~~~L~~L~l~~ 311 (380)
..+.++++|+.+.+..
T Consensus 295 ~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 295 SLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGGGSCTTCEEECCG
T ss_pred HHHhhccCceEEeCCH
Confidence 9999999999999986
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.2e-20 Score=166.47 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=206.4
Q ss_pred CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836 30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC 109 (380)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 109 (380)
+++.++++++. ++.+|.. . .+. ++.|+++++. +..+ + +. .+..++ +|++|++++|
T Consensus 34 ~l~~l~~~~~~-l~~ip~~-~---~~~--------l~~L~l~~n~-i~~~------~---~~-~~~~l~-~L~~L~L~~n 88 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKE-I---SPD--------TTLLDLQNND-ISEL------R---KD-DFKGLQ-HLYALVLVNN 88 (332)
T ss_dssp ETTEEECCSSC-CSSCCSC-C---CTT--------CCEEECCSSC-CCEE------C---TT-TTTTCT-TCCEEECCSS
T ss_pred cCCEEECCCCC-ccccCCC-C---CCC--------CeEEECCCCc-CCcc------C---Hh-HhhCCC-CCcEEECCCC
Confidence 68999998887 7777764 2 245 9999999864 3333 1 11 356677 6999999998
Q ss_pred CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEeccCCCCc--cc
Q 035836 110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIYDCERL--EA 186 (380)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~--~~ 186 (380)
......|..+..+++|++|++++ +.+..+|..+. ++|++|++++ +.+..++.. +..+++|++|++++|... ..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred ccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 64444578899999999999998 45667776654 7999999998 567777664 566889999999987653 24
Q ss_pred ccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccc
Q 035836 187 LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE 266 (380)
Q Consensus 187 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~ 266 (380)
.+..+..+ +|+.|++++|.. +.++.. .+++|++|++++|..... .... +..+++|+.|++++ +.+..++..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l-~~l~~~-~~~~L~~L~l~~n~i~~~-~~~~---l~~l~~L~~L~L~~--N~l~~~~~~ 235 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKL-TGIPKD-LPETLNELHLDHNKIQAI-ELED---LLRYSKLYRLGLGH--NQIRMIENG 235 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBC-SSCCSS-SCSSCSCCBCCSSCCCCC-CTTS---STTCTTCSCCBCCS--SCCCCCCTT
T ss_pred CcccccCC-ccCEEECcCCCC-CccCcc-ccCCCCEEECCCCcCCcc-CHHH---hcCCCCCCEEECCC--CcCCcCChh
Confidence 45566666 899999998853 344432 347999999999864433 2222 77889999999998 456555542
Q ss_pred cccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--------cccccEEEecCchhH
Q 035836 267 DKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--------PSSLLELWIWDCPLI 338 (380)
Q Consensus 267 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l 338 (380)
. +..+++|++|++++ +.++.+|..+..+++|++|++++ +.++.++...+ ..+++.|++.+++..
T Consensus 236 ~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 236 S------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp G------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred H------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccc
Confidence 2 25778999999999 58889998899999999999999 67888876433 346899999998854
Q ss_pred HHHhhccCCCCCccccCcCeeEECce
Q 035836 339 EEKCRKDGGQYWNLLTHIPYVSIDYK 364 (380)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (380)
... .....+..++.+..+.+.++
T Consensus 308 ~~~---~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 308 YWE---VQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGG---SCGGGGTTBCCSTTEEC---
T ss_pred ccc---cCcccccccchhhhhhcccc
Confidence 321 22234555666777766544
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3.2e-20 Score=180.20 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=44.3
Q ss_pred CCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc--ccCCC-CCcccccEEEecCchhHHHHhhccCCCCCc
Q 035836 275 PLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK--YFPEK-GLPSSLLELWIWDCPLIEEKCRKDGGQYWN 351 (380)
Q Consensus 275 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 351 (380)
..+++|++|++++|......+..+.++++|++|++++|. ++ .+|.. .-.++|++|++++|... ......+.
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~ 491 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLE-----QLSPTAFN 491 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCC-----EECTTTTT
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccc-----cCChhhhh
Confidence 344555555555532222233355556666666666543 22 23321 12346666666665322 12223344
Q ss_pred cccCcCeeEECceeeecC
Q 035836 352 LLTHIPYVSIDYKWVFDD 369 (380)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~ 369 (380)
.++.+..+.+.++.+...
T Consensus 492 ~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TCTTCCEEECCSSCCSCC
T ss_pred cccCCCEEeCCCCcCCCC
Confidence 556677777777666444
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.4e-19 Score=163.60 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=196.3
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836 7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (380)
+++.++++++ .++.+|. ...++|+.|+++++. +..++.. .+..+++ |++|+++++. +..+. +
T Consensus 32 ~l~~l~~~~~-~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~-----~ 93 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK-DLPPDTALLDLQNNK-ITEIKDG-DFKNLKN--------LHTLILINNK-ISKIS-----P 93 (330)
T ss_dssp ETTEEECTTS-CCCSCCC-SCCTTCCEEECCSSC-CCCBCTT-TTTTCTT--------CCEEECCSSC-CCCBC-----T
T ss_pred CCeEEEecCC-CccccCc-cCCCCCeEEECCCCc-CCEeChh-hhccCCC--------CCEEECCCCc-CCeeC-----H
Confidence 6788888775 4556654 345899999999987 8887765 5677777 9999999864 32220 1
Q ss_pred ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccce---e
Q 035836 87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLV---S 162 (380)
Q Consensus 87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~---~ 162 (380)
. .+..++ +|++|++++|. +..+|..+. ++|++|++++| .+..++ ..+..+++|+.|+++++ .+. .
T Consensus 94 ~-----~~~~l~-~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 162 (330)
T 1xku_A 94 G-----AFAPLV-KLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGI 162 (330)
T ss_dssp T-----TTTTCT-TCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGB
T ss_pred H-----HhcCCC-CCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCc
Confidence 1 355666 69999999885 666666553 79999999985 444444 45778999999999885 343 3
Q ss_pred ccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836 163 FTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 163 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (380)
.+..+..+++|+.|++++|. +..+|..+. ++|+.|++++|......+ ....+++|+.|++++|..... ....
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~--- 235 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGS--- 235 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTT---
T ss_pred ChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-Chhh---
Confidence 34455668899999999854 455665543 789999999885433322 346778999999999864432 2222
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhc------cCCCCceEeeecCCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIV------DLQNLTILQLIDCPK 314 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~------~~~~L~~L~l~~c~~ 314 (380)
+..+++|++|++++ +.+..++... ..+++|++|++++ +.++.++. .+. ..+.|+.|++.+++
T Consensus 236 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~- 304 (330)
T 1xku_A 236 LANTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP- 304 (330)
T ss_dssp GGGSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-
T ss_pred ccCCCCCCEEECCC--CcCccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-
Confidence 66789999999998 4666777655 5778999999998 57777765 332 24788999999854
Q ss_pred Ccc--cCCCCC--cccccEEEecCc
Q 035836 315 LKY--FPEKGL--PSSLLELWIWDC 335 (380)
Q Consensus 315 l~~--~~~~~~--~~~L~~L~l~~c 335 (380)
++. ++...+ ...++.++++++
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccCccccccccceeEEEeccc
Confidence 433 333222 357888888875
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1e-19 Score=164.48 Aligned_cols=282 Identities=18% Similarity=0.217 Sum_probs=201.5
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836 7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (380)
+++.++++++ .++.+|.. .+++|+.|+++++. +..++.. .+..++. |++|+++++. +..+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~------- 93 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE-ISPDTTLLDLQNND-ISELRKD-DFKGLQH--------LYALVLVNNK-ISKI------- 93 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC-CCTTCCEEECCSSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCEE-------
T ss_pred cCCEEECCCC-CccccCCC-CCCCCeEEECCCCc-CCccCHh-HhhCCCC--------CcEEECCCCc-cCcc-------
Confidence 6899999886 56666653 35899999999998 8877665 5777788 9999999874 3322
Q ss_pred ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccce---e
Q 035836 87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLV---S 162 (380)
Q Consensus 87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~---~ 162 (380)
.+. .+..++ +|++|++++|. +..+|..+. ++|++|++++| .+..++. .+..+++|+.|+++++ .+. .
T Consensus 94 --~~~-~~~~l~-~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 164 (332)
T 2ft3_A 94 --HEK-AFSPLR-KLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGF 164 (332)
T ss_dssp --CGG-GSTTCT-TCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGS
T ss_pred --CHh-HhhCcC-CCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCC
Confidence 111 356677 69999999985 666766554 79999999985 5555554 4788999999999984 443 2
Q ss_pred ccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836 163 FTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG 241 (380)
Q Consensus 163 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (380)
.+..+..+ +|+.|++++|. ++.+|..+. ++|+.|++++|......+ ....+++|+.|++++|.... .....
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~--- 236 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGS--- 236 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTG---
T ss_pred CcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhH---
Confidence 33344444 89999999864 555666553 789999999985444332 34678899999999986443 33222
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhcc------CCCCceEeeecCCC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVD------LQNLTILQLIDCPK 314 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~------~~~L~~L~l~~c~~ 314 (380)
+..+++|+.|++++ +.+..++... ..+++|++|++++ +.++.++. .+.. .+.|+.|++.+++
T Consensus 237 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~- 305 (332)
T 2ft3_A 237 LSFLPTLRELHLDN--NKLSRVPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP- 305 (332)
T ss_dssp GGGCTTCCEEECCS--SCCCBCCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-
T ss_pred hhCCCCCCEEECCC--CcCeecChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-
Confidence 66889999999998 4677777755 5788999999999 67887765 3333 4679999999965
Q ss_pred Cc--ccCCCCC--cccccEEEecCch
Q 035836 315 LK--YFPEKGL--PSSLLELWIWDCP 336 (380)
Q Consensus 315 l~--~~~~~~~--~~~L~~L~l~~c~ 336 (380)
+. .++...+ .+.|+.+++++|.
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccCcccccccchhhhhhccccc
Confidence 44 3433322 4688899998864
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=9.7e-21 Score=169.72 Aligned_cols=249 Identities=14% Similarity=0.133 Sum_probs=186.3
Q ss_pred cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec-CCChhhhHhhccCCCCccEEeecCCCCCCcccccc
Q 035836 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH-CSKLESIAERLDNNTSLETIDISNCESLKILPSGL 143 (380)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 143 (380)
++.|+++++. +... ..++. .+..++ +|++|++++ |.....+|..+..+++|++|++++|.....+|..+
T Consensus 52 l~~L~L~~~~-l~~~-------~~~~~-~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 52 VNNLDLSGLN-LPKP-------YPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp EEEEEEECCC-CSSC-------EECCG-GGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred EEEEECCCCC-ccCC-------cccCh-hHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 8999998864 2210 01122 455677 699999995 65455788889999999999999966555788888
Q ss_pred cCCCCCcEEEccccccce-eccCCCccCCCCCEEeccCCCCcccccccCCCCC-CccEEEeccCCCCCCCCCC-CCCCCc
Q 035836 144 HNLRQLQKIEIWECENLV-SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLT-SLQELTIGKGVELPSLEED-GLPTNL 220 (380)
Q Consensus 144 ~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~-~~~~~L 220 (380)
..+++|++|+++++ .+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|......+.. ..++ |
T Consensus 122 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 122 SQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred hCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999999999985 455 6777778889999999999877668888888887 9999999988654334332 3344 9
Q ss_pred eEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCcc-chhhhhc
Q 035836 221 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIV 299 (380)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~ 299 (380)
+.|++++|......+ .. +..+++|+.|++++ + .+....... ..+++|++|+++++ .+. .+|..+.
T Consensus 200 ~~L~Ls~N~l~~~~~-~~---~~~l~~L~~L~L~~-N-~l~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~p~~l~ 265 (313)
T 1ogq_A 200 AFVDLSRNMLEGDAS-VL---FGSDKNTQKIHLAK-N-SLAFDLGKV-------GLSKNLNGLDLRNN-RIYGTLPQGLT 265 (313)
T ss_dssp SEEECCSSEEEECCG-GG---CCTTSCCSEEECCS-S-EECCBGGGC-------CCCTTCCEEECCSS-CCEECCCGGGG
T ss_pred cEEECcCCcccCcCC-HH---HhcCCCCCEEECCC-C-ceeeecCcc-------cccCCCCEEECcCC-cccCcCChHHh
Confidence 999999986543322 22 77899999999998 3 343332223 46789999999995 555 7788899
Q ss_pred cCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHH
Q 035836 300 DLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE 339 (380)
Q Consensus 300 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 339 (380)
.+++|++|++++|.--..+|...-.++|+.+++.+++.++
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 9999999999995433367776556788888998887665
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.3e-20 Score=167.27 Aligned_cols=251 Identities=17% Similarity=0.165 Sum_probs=185.2
Q ss_pred CCCceEeecCCcCcc---ccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836 29 PSLKQLRISDCDNIR---TLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY 105 (380)
Q Consensus 29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 105 (380)
.+++.|+++++. +. .++. .+..++. |++|+++++..+... +|. .+..++ +|++|+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~--~l~~l~~--------L~~L~L~~~n~l~~~-----~p~-----~l~~l~-~L~~L~ 107 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPS--SLANLPY--------LNFLYIGGINNLVGP-----IPP-----AIAKLT-QLHYLY 107 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCG--GGGGCTT--------CSEEEEEEETTEESC-----CCG-----GGGGCT-TCSEEE
T ss_pred ceEEEEECCCCC-ccCCcccCh--hHhCCCC--------CCeeeCCCCCccccc-----CCh-----hHhcCC-CCCEEE
Confidence 578899998887 55 3554 4667777 999999853333321 122 345566 699999
Q ss_pred EecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce-eccCCCccCC-CCCEEeccCCCC
Q 035836 106 VSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV-SFTEGGLPCA-KLTRLDIYDCER 183 (380)
Q Consensus 106 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~-~L~~L~l~~~~~ 183 (380)
+++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++ .+. .+|..+..++ +|+.|++++|..
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCee
Confidence 9998655578888889999999999986655578888888999999999885 454 7777777776 899999998776
Q ss_pred cccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836 184 LEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS 262 (380)
Q Consensus 184 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 262 (380)
...+|..+..++ |+.|++++|......+ ....+++|+.|++++|......+. +..+++|++|++++ |.....
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~-N~l~~~ 259 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN-NRIYGT 259 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS-SCCEEC
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcC-CcccCc
Confidence 667777777776 9999999885443333 346788999999999875443333 56789999999998 443335
Q ss_pred cccccccccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCccc
Q 035836 263 FPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYF 318 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~ 318 (380)
++... ..+++|++|+++++ .+. .+|.. ..+++|+.|++.+++.+...
T Consensus 260 ~p~~l-------~~l~~L~~L~Ls~N-~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 260 LPQGL-------TQLKFLHSLNVSFN-NLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCGGG-------GGCTTCCEEECCSS-EEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CChHH-------hcCcCCCEEECcCC-cccccCCCC-ccccccChHHhcCCCCccCC
Confidence 66555 57789999999994 555 56644 78899999999997756543
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=6.4e-19 Score=173.09 Aligned_cols=135 Identities=19% Similarity=0.133 Sum_probs=96.5
Q ss_pred CCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836 191 LHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR 269 (380)
Q Consensus 191 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~ 269 (380)
+..+++++.++++.+......+ ....++.++.|++++|.......+.. +..+++|+.|++++ +.+..++...
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~--N~L~~l~~~~-- 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ--CQLEQLSPTA-- 513 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT--SCCCEECTTT--
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCC--CccCCcChHH--
Confidence 3445555566665553322222 23567889999999987655444333 77899999999998 4666664422
Q ss_pred ccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---cccccEEEecCchhH
Q 035836 270 LGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSSLLELWIWDCPLI 338 (380)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l 338 (380)
+..+++|++|++++ +.++.++. .+.++++|++|++++ ++++.++...+ +++|++|+++++|..
T Consensus 514 ----f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 514 ----FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ----TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ----HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 36789999999999 68888765 788999999999999 67888766443 578999999876533
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.2e-19 Score=161.90 Aligned_cols=272 Identities=17% Similarity=0.168 Sum_probs=178.2
Q ss_pred CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836 28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS 107 (380)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 107 (380)
|+.....+.++.. ++.+|.+ .. +. |++|+++++. ++.+ +. -.+..++ +|++|+++
T Consensus 30 C~~~~~c~~~~~~-l~~iP~~-~~---~~--------L~~L~l~~n~-i~~~------~~----~~~~~l~-~L~~L~L~ 84 (353)
T 2z80_A 30 CDRNGICKGSSGS-LNSIPSG-LT---EA--------VKSLDLSNNR-ITYI------SN----SDLQRCV-NLQALVLT 84 (353)
T ss_dssp ECTTSEEECCSTT-CSSCCTT-CC---TT--------CCEEECTTSC-CCEE------CT----TTTTTCT-TCCEEECT
T ss_pred CCCCeEeeCCCCC-ccccccc-cc---cc--------CcEEECCCCc-Cccc------CH----HHhccCC-CCCEEECC
Confidence 4555555665554 6666654 11 24 8888887753 3333 10 0245566 58888888
Q ss_pred cCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC--CCccCCCCCEEeccCCCCc
Q 035836 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE--GGLPCAKLTRLDIYDCERL 184 (380)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~ 184 (380)
+|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++ +.+..++. .+..+++|++|++++|..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc
Confidence 8753333455677888888888888 455556654 67788888888887 46666665 4556788888888887655
Q ss_pred ccc-cccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836 185 EAL-PKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS 262 (380)
Q Consensus 185 ~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 262 (380)
..+ +..+..+++|+.|++++|......+ ....+++|++|++++|.. ...+..+ +..+++|+.|++++ +.+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~~--n~l~~ 236 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELRD--TDLDT 236 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEES--CBCTT
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECCC--Ccccc
Confidence 555 3567788888888888875443333 345678899999988764 3333322 44578899999988 34444
Q ss_pred cccccccccCCCCCCCCcceEecccCC----CccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836 263 FPLEDKRLGTALPLPASLTSLWIEDFP----NLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP 336 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 336 (380)
++.... ......+.++.+++.++. .+..+|..+..+++|++|++++ +.++.+|...+ .++|++|++++|+
T Consensus 237 ~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 237 FHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 332110 001234566777776632 2234677788999999999998 57888887543 5789999998875
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.6e-18 Score=161.40 Aligned_cols=242 Identities=17% Similarity=0.202 Sum_probs=167.5
Q ss_pred CceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCC
Q 035836 31 LKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCS 110 (380)
Q Consensus 31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 110 (380)
.+.++..+.. +..+|.+ . .+. ++.|+++++. +..+. + . .+..++ +|++|++++|.
T Consensus 45 ~~~v~c~~~~-l~~iP~~-~---~~~--------l~~L~L~~n~-i~~~~-----~----~-~~~~l~-~L~~L~Ls~n~ 99 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDG-I---STN--------TRLLNLHENQ-IQIIK-----V----N-SFKHLR-HLEILQLSRNH 99 (440)
T ss_dssp SCEEECCSCC-CSSCCSC-C---CTT--------CSEEECCSCC-CCEEC-----T----T-TTSSCS-SCCEEECCSSC
T ss_pred CCEEEeCCCC-cCcCCCC-C---CCC--------CcEEEccCCc-CCeeC-----H----H-HhhCCC-CCCEEECCCCc
Confidence 4556655544 6666654 1 134 8888888753 33331 0 0 355666 58888888885
Q ss_pred ChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc
Q 035836 111 KLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP 188 (380)
Q Consensus 111 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~ 188 (380)
.....+..+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++. .+..+++|++|++++|..+..++
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 33334467788888999998884 5555554 467788899999888 45666665 45567888999988877777666
Q ss_pred c-cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836 189 K-GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED 267 (380)
Q Consensus 189 ~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 267 (380)
. .+..+++|+.|++++| .++.++....+++|+.|++++|.... ..+.. +..+++|+.|++++ +.+..+....
T Consensus 178 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~--n~l~~~~~~~ 250 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA-IRPGS---FQGLMHLQKLWMIQ--SQIQVIERNA 250 (440)
T ss_dssp TTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE-ECTTT---TTTCTTCCEEECTT--CCCCEECTTS
T ss_pred cchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc-cChhh---hccCccCCEEECCC--CceeEEChhh
Confidence 4 5778888999998887 44566667778888888888885433 32222 67788888888887 4555554322
Q ss_pred ccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 268 KRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
+..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 251 ------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 ------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 35678888888888 57777765 66778888888888744
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.7e-18 Score=160.56 Aligned_cols=264 Identities=28% Similarity=0.316 Sum_probs=123.8
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836 6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
++|++|+++++ .++.+|. .+++|++|+++++. +..++.. .+. |++|+++++. ++.+
T Consensus 91 ~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~--------L~~L~L~~n~-l~~l------ 146 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPL--------LEYLGVSNNQ-LEKL------ 146 (454)
T ss_dssp TTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTT--------CCEEECCSSC-CSSC------
T ss_pred CCCCEEEccCC-cCCcccc--ccCCCcEEECCCCc-cCcccCC-----CCC--------CCEEECcCCC-CCCC------
Confidence 46777777765 3444543 24667777777664 4443321 123 6677766652 2222
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE 165 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 165 (380)
| .+..++ +|++|++++|. +..+|.. .++|++|++++| .+..+| .+..+++|++|+++++ .+..++.
T Consensus 147 p------~~~~l~-~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~ 212 (454)
T 1jl5_A 147 P------ELQNSS-FLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD 212 (454)
T ss_dssp C------CCTTCT-TCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC
T ss_pred c------ccCCCC-CCCEEECCCCc-CcccCCC---cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC
Confidence 1 233444 46666666653 3333332 235666666653 333344 3555566666666552 3333332
Q ss_pred CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhc------
Q 035836 166 GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWG------ 239 (380)
Q Consensus 166 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------ 239 (380)
.. ++|++|++++|. +..+|. +..+++|+.|++++|.. +.++. .+++|+.|++++|.... ++. ..
T Consensus 213 ~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~--~~~~L~~L~l~~N~l~~-l~~-~~~~L~~L 282 (454)
T 1jl5_A 213 LP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLL-KTLPD--LPPSLEALNVRDNYLTD-LPE-LPQSLTFL 282 (454)
T ss_dssp CC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SSCCS--CCTTCCEEECCSSCCSC-CCC-CCTTCCEE
T ss_pred Cc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcC-Ccccc--cccccCEEECCCCcccc-cCc-ccCcCCEE
Confidence 21 355555555542 224442 45555555555555422 22221 22445555554443211 110 00
Q ss_pred -------ccc-CCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836 240 -------RGF-HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID 311 (380)
Q Consensus 240 -------~~~-~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 311 (380)
..+ ...++|+.|++++ +.+..++ ..+++|++|++++ +.++.+|.. +++|++|++++
T Consensus 283 ~ls~N~l~~l~~~~~~L~~L~l~~--N~l~~i~----------~~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 283 DVSENIFSGLSELPPNLYYLNASS--NEIRSLC----------DLPPSLEELNVSN-NKLIELPAL---PPRLERLIASF 346 (454)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCS--SCCSEEC----------CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS
T ss_pred ECcCCccCcccCcCCcCCEEECcC--CcCCccc----------CCcCcCCEEECCC-Ccccccccc---CCcCCEEECCC
Confidence 000 0012344444433 1222221 1224566666666 345554432 35666666666
Q ss_pred CCCCcccCCCCCcccccEEEecCch
Q 035836 312 CPKLKYFPEKGLPSSLLELWIWDCP 336 (380)
Q Consensus 312 c~~l~~~~~~~~~~~L~~L~l~~c~ 336 (380)
+.++.+|. .+++|++|++++|.
T Consensus 347 -N~l~~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 347 -NHLAEVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp -SCCSCCCC--CCTTCCEEECCSSC
T ss_pred -Cccccccc--hhhhccEEECCCCC
Confidence 35556655 44566666666654
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.6e-18 Score=163.39 Aligned_cols=222 Identities=19% Similarity=0.210 Sum_probs=143.2
Q ss_pred CCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836 98 PPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL 176 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 176 (380)
|.++++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEE
Confidence 34678888877753334456677778888888877433333334566777888888877 456666654 4457778888
Q ss_pred eccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836 177 DIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS 254 (380)
Q Consensus 177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 254 (380)
++++|......+..+..+++|+.|++++|..+..++. ...+++|+.|++++|.... .+. +..+++|+.|+++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-----LTPLVGLEELEMS 226 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-----CTTCTTCCEEECT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-----ccccccccEEECc
Confidence 8877654333334567777888888877666655543 3566778888887775432 221 5667788888887
Q ss_pred cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh-hhhccCCCCceEeeecCCCCcccCCCCC--cccccEEE
Q 035836 255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELW 331 (380)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~ 331 (380)
+ +.+..+.... +..+++|++|++++ +.+..++ ..+.++++|++|++++ +.++.++...+ .++|+.|+
T Consensus 227 ~--N~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 227 G--NHFPEIRPGS------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp T--SCCSEECGGG------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEE
T ss_pred C--CcCcccCccc------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEE
Confidence 7 3444443321 25677788888887 4555553 3677778888888887 46777766433 45778888
Q ss_pred ecCch
Q 035836 332 IWDCP 336 (380)
Q Consensus 332 l~~c~ 336 (380)
+++++
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 77665
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.7e-18 Score=160.19 Aligned_cols=242 Identities=21% Similarity=0.245 Sum_probs=167.3
Q ss_pred CceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCC
Q 035836 31 LKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCS 110 (380)
Q Consensus 31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 110 (380)
...++..+.. +..+|.+ . .+. ++.|+++++. +..+. +. .+..++ +|++|++++|.
T Consensus 56 ~~~v~c~~~~-l~~iP~~-~---~~~--------l~~L~L~~n~-i~~~~-----~~-----~~~~l~-~L~~L~Ls~n~ 110 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQG-I---PSN--------TRYLNLMENN-IQMIQ-----AD-----TFRHLH-HLEVLQLGRNS 110 (452)
T ss_dssp SCEEECCSSC-CSSCCSC-C---CTT--------CSEEECCSSC-CCEEC-----TT-----TTTTCT-TCCEEECCSSC
T ss_pred CcEEEECCCC-cCccCCC-C---CCC--------ccEEECcCCc-CceEC-----HH-----HcCCCC-CCCEEECCCCc
Confidence 4555555444 6666643 1 133 8888888763 33220 11 345666 58888888885
Q ss_pred ChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc
Q 035836 111 KLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP 188 (380)
Q Consensus 111 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~ 188 (380)
.....+..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++. .+..+++|+.|++++|..+..++
T Consensus 111 i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 111 IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 33344467788888889988884 45555544 66788888998888 45666665 45567888999888877777776
Q ss_pred c-cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836 189 K-GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED 267 (380)
Q Consensus 189 ~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 267 (380)
. .+..+++|+.|++++|. ++.++....+++|+.|++++|......+ .. +..+++|+.|++++ +.+..+....
T Consensus 189 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~---~~~l~~L~~L~L~~--n~l~~~~~~~ 261 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRP-GS---FHGLSSLKKLWVMN--SQVSLIERNA 261 (452)
T ss_dssp TTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECG-GG---GTTCTTCCEEECTT--SCCCEECTTT
T ss_pred hhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCc-cc---ccCccCCCEEEeCC--CcCceECHHH
Confidence 4 56788889999998874 4556667778889999998886544322 22 67888999999987 4555554322
Q ss_pred ccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 268 KRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
+..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 262 ------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 ------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 35678899999988 57777766 67788899999998754
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.1e-18 Score=162.01 Aligned_cols=222 Identities=16% Similarity=0.235 Sum_probs=175.0
Q ss_pred CCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccC-CCccCCCCC
Q 035836 97 LPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLT 174 (380)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 174 (380)
++.+++.|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++. .+..+++|+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCC
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCc
Confidence 3447999999998643344578899999999999995 455454 5678899999999998 57777776 456789999
Q ss_pred EEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceee
Q 035836 175 RLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA 252 (380)
Q Consensus 175 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 252 (380)
.|++++|......+..+..+++|+.|++++|..+..++. ...+++|+.|++++|... .++. +..+++|+.|+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-----LTPLIKLDELD 213 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-----CTTCSSCCEEE
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-----cCCCcccCEEE
Confidence 999999765444445788999999999999877776654 467899999999998644 3332 77889999999
Q ss_pred eecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC--cccccE
Q 035836 253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLE 329 (380)
Q Consensus 253 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~ 329 (380)
+++ +.+..+.... +..+++|++|++++ +.++.++. .+.++++|++|++++ +.++.++...+ .++|+.
T Consensus 214 Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 214 LSG--NHLSAIRPGS------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CTT--SCCCEECTTT------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCE
T ss_pred CCC--CccCccChhh------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCE
Confidence 998 4666654322 36789999999999 57777655 788999999999999 67888887544 478999
Q ss_pred EEecCch
Q 035836 330 LWIWDCP 336 (380)
Q Consensus 330 L~l~~c~ 336 (380)
|++++++
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9998876
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=3.1e-18 Score=168.17 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=68.7
Q ss_pred CCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh-hhhccCCCCceEeeecCCCCcccCCC
Q 035836 243 HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEK 321 (380)
Q Consensus 243 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~ 321 (380)
..+++|+.|++++ +.....+.. ..+..+++|++|+++++ .++.++ ..+.++++|++|++++ ++++.++..
T Consensus 466 ~~~~~L~~L~Ls~-N~~~~~~~~------~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~ 536 (635)
T 4g8a_A 466 NGLSSLEVLKMAG-NSFQENFLP------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTF 536 (635)
T ss_dssp TTCTTCCEEECTT-CEEGGGEEC------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCG
T ss_pred ccchhhhhhhhhh-cccccccCc------hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChh
Confidence 3445556666655 332322221 12356778888888884 666664 4788888888888888 567777664
Q ss_pred CC--cccccEEEecCchhHHHHhhccCCCCCccc-cCcCeeEECceeee
Q 035836 322 GL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLL-THIPYVSIDYKWVF 367 (380)
Q Consensus 322 ~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 367 (380)
.+ .++|++|++++|.... ...+.+..+ +.+..+.+.++++.
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HHhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCc
Confidence 33 4688888888764322 223333334 46777888777664
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.4e-17 Score=154.00 Aligned_cols=293 Identities=26% Similarity=0.270 Sum_probs=173.2
Q ss_pred ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836 8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA 87 (380)
Q Consensus 8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (380)
+++|++++| .++.+|. .+++|++|+++++. +..++.. ... |+.|+++++. +..+
T Consensus 73 l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~n~-l~~lp~~-----~~~--------L~~L~l~~n~-l~~l-------- 126 (454)
T 1jl5_A 73 AHELELNNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL-----PQS--------LKSLLVDNNN-LKAL-------- 126 (454)
T ss_dssp CSEEECTTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC-----CTT--------CCEEECCSSC-CSCC--------
T ss_pred CCEEEecCC-ccccCCC--CcCCCCEEEccCCc-CCccccc-----cCC--------CcEEECCCCc-cCcc--------
Confidence 466666665 3444443 24667777776665 5544421 133 7777777652 2222
Q ss_pred cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836 88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG 167 (380)
Q Consensus 88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 167 (380)
..+|++|++|++++|. +..+| .++.+++|++|++++| .+..+|.. ..+|++|+++++ .+..++ .+
T Consensus 127 -------~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n-~l~~l~-~~ 191 (454)
T 1jl5_A 127 -------SDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELP-EL 191 (454)
T ss_dssp -------CSCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCC-CC
T ss_pred -------cCCCCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCC-cCCcCc-cc
Confidence 2233468888888874 55576 5888888899988885 45556643 358888888884 666666 56
Q ss_pred ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836 168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 247 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (380)
..+++|+.|++++|.. ..+|.. .++|+.|++++|. ++.++....+++|+.|++++|.... .+. .+++
T Consensus 192 ~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~-l~~-------~~~~ 258 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGNNI-LEELPELQNLPFLTTIYADNNLLKT-LPD-------LPPS 258 (454)
T ss_dssp TTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSS-CCS-------CCTT
T ss_pred cCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcCCc-CCcccccCCCCCCCEEECCCCcCCc-ccc-------cccc
Confidence 6788889998888643 334432 3578888888884 4466666778889999998875332 211 2357
Q ss_pred cceeeeecCCCCCccccccccc----------ccCCCCCCCCcceEecccCCCccchhhhhccC-CCCceEeeecCCCCc
Q 035836 248 LRRLAISGCDDDMVSFPLEDKR----------LGTALPLPASLTSLWIEDFPNLERLSSSIVDL-QNLTILQLIDCPKLK 316 (380)
Q Consensus 248 L~~L~l~~~~~~l~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~ 316 (380)
|+.|++++ +.+..++..... +.+....+++|++|++++ +.++.++ .+ ++|++|++++ +.++
T Consensus 259 L~~L~l~~--N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~-N~l~~i~----~~~~~L~~L~Ls~-N~l~ 330 (454)
T 1jl5_A 259 LEALNVRD--NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS-NEIRSLC----DLPPSLEELNVSN-NKLI 330 (454)
T ss_dssp CCEEECCS--SCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCS-SCCSEEC----CCCTTCCEEECCS-SCCS
T ss_pred cCEEECCC--CcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcC-CcCCccc----CCcCcCCEEECCC-Cccc
Confidence 77777776 334444431100 000001223444444444 2333322 22 4777888877 5566
Q ss_pred ccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec--CCCCC
Q 035836 317 YFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD--DDPTE 373 (380)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 373 (380)
.+|. .+++|++|++++|..- . ... ..+.+..+.+.++.+.. .+|..
T Consensus 331 ~lp~--~~~~L~~L~L~~N~l~-~----lp~----~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 331 ELPA--LPPRLERLIASFNHLA-E----VPE----LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCCC--CCTTCCEEECCSSCCS-C----CCC----CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred cccc--cCCcCCEEECCCCccc-c----ccc----hhhhccEEECCCCCCCcCCCChHH
Confidence 6655 2467888888876322 1 111 24566777777766655 45543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.3e-18 Score=153.75 Aligned_cols=171 Identities=19% Similarity=0.165 Sum_probs=75.0
Q ss_pred EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836 10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL 89 (380)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 89 (380)
.+++++. .++.+|. ..+++|++|+++++. +..++.+ .+..+++ |+.|+++++. +... +..
T Consensus 11 ~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~-~~~~l~~--------L~~L~L~~n~-l~~~-------~~~ 70 (306)
T 2z66_A 11 EIRCNSK-GLTSVPT-GIPSSATRLELESNK-LQSLPHG-VFDKLTQ--------LTKLSLSSNG-LSFK-------GCC 70 (306)
T ss_dssp EEECCSS-CCSSCCS-CCCTTCCEEECCSSC-CCCCCTT-TTTTCTT--------CSEEECCSSC-CCEE-------EEE
T ss_pred EEEcCCC-CcccCCC-CCCCCCCEEECCCCc-cCccCHh-Hhhcccc--------CCEEECCCCc-cCcc-------cCc
Confidence 3444442 3444443 234566666666665 5555544 3445555 6666665542 1111 000
Q ss_pred cccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc--ccccCCCCCcEEEccccccceec-cCC
Q 035836 90 ESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP--SGLHNLRQLQKIEIWECENLVSF-TEG 166 (380)
Q Consensus 90 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l-~~~ 166 (380)
+. .+..++ +|++|++++|. +..+|..+..+++|++|++++| .+..++ ..+..+++|++|+++++ .+... +..
T Consensus 71 ~~-~~~~~~-~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 145 (306)
T 2z66_A 71 SQ-SDFGTT-SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 145 (306)
T ss_dssp EH-HHHSCS-CCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTT
T ss_pred cc-cccccc-ccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchhh
Confidence 00 122333 35555555542 3344444555555555555552 222222 13444555555555543 22222 222
Q ss_pred CccCCCCCEEeccCCCCcc-cccccCCCCCCccEEEeccC
Q 035836 167 GLPCAKLTRLDIYDCERLE-ALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 167 ~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 205 (380)
+..+++|++|++++|.... .+|..+..+++|+.|++++|
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 3334455555554433222 23344444444444444444
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.8e-18 Score=152.37 Aligned_cols=223 Identities=18% Similarity=0.176 Sum_probs=157.4
Q ss_pred CCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcc---cccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 98 PPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKIL---PSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
+++|++|++++|. +..+|.. +..+++|++|++++| .+..+ +..+..+++|++|++++ +.+..++..+..+++|
T Consensus 27 ~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCC
Confidence 3478899998875 5556553 678889999999885 44332 45556688899999988 4667777777778889
Q ss_pred CEEeccCCCCccccc--ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836 174 TRLDIYDCERLEALP--KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR 250 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 250 (380)
++|++++|.. ..++ ..+..+++|+.|++++|......+. ...+++|++|++++|.......+.. +..+++|+.
T Consensus 104 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~ 179 (306)
T 2z66_A 104 EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTF 179 (306)
T ss_dssp CEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCE
T ss_pred CEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH---HhhCcCCCE
Confidence 9999887543 3333 3677888899999988854433333 3567889999998886443222222 778899999
Q ss_pred eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCC---CCccc
Q 035836 251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEK---GLPSS 326 (380)
Q Consensus 251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~ 326 (380)
|++++ +.+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++| .++..... .++++
T Consensus 180 L~Ls~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 180 LDLSQ--CQLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS 249 (306)
T ss_dssp EECTT--SCCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTT
T ss_pred EECCC--CCcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhcc
Confidence 99998 3555553222 25778999999998 56777665 7788999999999985 56554432 23468
Q ss_pred ccEEEecCchh
Q 035836 327 LLELWIWDCPL 337 (380)
Q Consensus 327 L~~L~l~~c~~ 337 (380)
|++|++++|+.
T Consensus 250 L~~L~L~~N~~ 260 (306)
T 2z66_A 250 LAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTCCE
T ss_pred CCEEEccCCCe
Confidence 99999988763
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.8e-17 Score=159.57 Aligned_cols=257 Identities=26% Similarity=0.305 Sum_probs=186.2
Q ss_pred CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836 7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86 (380)
Q Consensus 7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (380)
+++.|+++++ .++.+|... +++|+.|++++|. ++.++. .+++ |+.|+++++. ++.+
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~--------L~~L~Ls~N~-l~~l------- 96 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPE--------LRTLEVSGNQ-LTSL------- 96 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTT--------CCEEEECSCC-CSCC-------
T ss_pred CCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCC--------CCEEEcCCCc-CCcC-------
Confidence 5889999886 566777633 4899999999997 777664 3455 9999999874 4444
Q ss_pred ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC
Q 035836 87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG 166 (380)
Q Consensus 87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 166 (380)
+. .++ +|++|++++|. +..+|. .+++|++|++++| .+..+|.. +++|++|++++| .+..++..
T Consensus 97 ------p~-~l~-~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~ 159 (622)
T 3g06_A 97 ------PV-LPP-GLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPAL 159 (622)
T ss_dssp ------CC-CCT-TCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCCC
T ss_pred ------CC-CCC-CCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCCc
Confidence 22 445 69999999884 555655 5788999999984 56667754 488999999984 66666542
Q ss_pred CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836 167 GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS 246 (380)
Q Consensus 167 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (380)
+++|+.|++++| .++.+| ..+++|+.|++++|. ++.++. .+++|+.|++++|.... ++ ..++
T Consensus 160 ---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N~l~~-l~-------~~~~ 221 (622)
T 3g06_A 160 ---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNRLTS-LP-------ALPS 221 (622)
T ss_dssp ---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSS-CC-------CCCT
T ss_pred ---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC--ccchhhEEECcCCcccc-cC-------CCCC
Confidence 358999999885 445565 346889999999884 344443 35789999999876432 21 1347
Q ss_pred ccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcc
Q 035836 247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPS 325 (380)
Q Consensus 247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 325 (380)
+|+.|++++ +.+..++. .+++|++|++++ +.++.+|. .+++|++|++++ +.++.+|.. .-.+
T Consensus 222 ~L~~L~Ls~--N~L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~ 284 (622)
T 3g06_A 222 GLKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLS 284 (622)
T ss_dssp TCCEEECCS--SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS-SCCCSCCGGGGGSC
T ss_pred CCCEEEccC--CccCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCC-CCCCcCCHHHhhcc
Confidence 899999988 46666662 567899999998 57888775 678899999998 567787752 2246
Q ss_pred cccEEEecCchhHH
Q 035836 326 SLLELWIWDCPLIE 339 (380)
Q Consensus 326 ~L~~L~l~~c~~l~ 339 (380)
+|+.|++++|+...
T Consensus 285 ~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 285 SETTVNLEGNPLSE 298 (622)
T ss_dssp TTCEEECCSCCCCH
T ss_pred ccCEEEecCCCCCC
Confidence 89999999887443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.5e-18 Score=150.35 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836 10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL 89 (380)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 89 (380)
.+++++ ..++.+|. ..+++|++|+++++. +..++.. .+..++. |+.|+++++. +..+. +.
T Consensus 15 ~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~-~~~~~~~--------L~~L~l~~n~-l~~~~-----~~-- 74 (285)
T 1ozn_A 15 TTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAA-SFRACRN--------LTILWLHSNV-LARID-----AA-- 74 (285)
T ss_dssp EEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCEEC-----TT--
T ss_pred EEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHH-HcccCCC--------CCEEECCCCc-cceeC-----Hh--
Confidence 444444 24455543 335677777777766 6665544 4455555 6777766642 22220 00
Q ss_pred cccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-C
Q 035836 90 ESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-G 167 (380)
Q Consensus 90 ~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~ 167 (380)
.+..++ +|++|++++|..+..+ +..+..+++|++|++++|......+..+..+++|++|++++ +.+..++.. +
T Consensus 75 ---~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~ 149 (285)
T 1ozn_A 75 ---AFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTF 149 (285)
T ss_dssp ---TTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred ---hcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHh
Confidence 234445 4666666666434433 45556666666666666433333334455566666666665 344444433 3
Q ss_pred ccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCC
Q 035836 168 LPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGN 228 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 228 (380)
..+++|+.|++++|.. +.++ ..+..+++|+.|++++|......+ ....+++|+.|++++|
T Consensus 150 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCccEEECCCCcc-cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 4455666666665432 2333 235555666666666553322212 1233444555555544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.9e-19 Score=161.66 Aligned_cols=242 Identities=13% Similarity=0.165 Sum_probs=151.2
Q ss_pred CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
.+++|++|+++++. +..++.. .+..++. |+.|+++++...... ++..++ +|++|++
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~n~l~~~~-------------~~~~l~-~L~~L~L 87 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAA-DLAPFTK--------LELLNLSSNVLYETL-------------DLESLS-TLRTLDL 87 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHH-HHTTCTT--------CCEEECTTSCCEEEE-------------EETTCT-TCCEEEC
T ss_pred cCCCCCEEECcCCc-cCcCCHH-HhhCCCc--------CCEEECCCCcCCcch-------------hhhhcC-CCCEEEC
Confidence 45678888888876 6666544 4666666 888888776422211 345566 5888888
Q ss_pred ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc
Q 035836 107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE 185 (380)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~ 185 (380)
++|. +..++ ..++|++|++++| .+..++.. .+++|+.|++++ +.+..++. .+..+++|+.|++++|....
T Consensus 88 s~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNY-VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSE-EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCc-ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 8774 44333 3478888888874 44444422 367788888877 35555543 44556778888888765544
Q ss_pred cccccC-CCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836 186 ALPKGL-HNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP 264 (380)
Q Consensus 186 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~ 264 (380)
..+..+ ..+++|+.|++++|. ++.++....+++|++|++++|........ +..+++|+.|++++ +.+..++
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~L~~--N~l~~l~ 230 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN--NKLVLIE 230 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT--SCCCEEC
T ss_pred ccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh-----hcccCcccEEECcC--Ccccchh
Confidence 444444 356778888888774 33344444567777777777654332221 44667777777776 3555665
Q ss_pred cccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeeecCCCCcc
Q 035836 265 LEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLIDCPKLKY 317 (380)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~ 317 (380)
... ..+++|++|+++++ .+. .++..+..+++|+.|++.+++.++.
T Consensus 231 ~~~-------~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 231 KAL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TTC-------CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hHh-------hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccC
Confidence 544 46677777777773 443 4455666777777777776555544
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.9e-17 Score=145.13 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=140.9
Q ss_pred CCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCE
Q 035836 98 PPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTR 175 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~ 175 (380)
|++|++|++++|. +..+ +..+..+++|++|++++|......+..+..+++|++|+++++..+..+ +..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4479999999885 4444 456788899999999885433333566778899999999886547766 445666888999
Q ss_pred EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836 176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS 254 (380)
Q Consensus 176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 254 (380)
|++++|......+..+..+++|+.|++++|......+. ...+++|+.|++++|... ...... +..+++|+.|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~---~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA---FRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTT---TTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHH---hcCccccCEEECC
Confidence 99988765555566778888999999988754332222 356788888888887533 333222 6677888888888
Q ss_pred cCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 255 GCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 255 ~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
+ +.+..+ +... ..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 186 ~--n~l~~~~~~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 186 Q--NRVAHVHPHAF-------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp S--SCCCEECTTTT-------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred C--CcccccCHhHc-------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 7 344444 3333 4677888888888 46666664 57778888888888753
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=4.3e-17 Score=158.22 Aligned_cols=259 Identities=25% Similarity=0.257 Sum_probs=196.5
Q ss_pred CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec
Q 035836 29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH 108 (380)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 108 (380)
.+++.|+++++. ++.+|.. .. ++ |+.|+++++. ++.+ +. .++ +|++|++++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~-l~---~~--------L~~L~L~~N~-l~~l-------------p~-~l~-~L~~L~Ls~ 90 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDC-LP---AH--------ITTLVIPDNN-LTSL-------------PA-LPP-ELRTLEVSG 90 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSC-CC---TT--------CSEEEECSCC-CSCC-------------CC-CCT-TCCEEEECS
T ss_pred CCCcEEEecCCC-cCccChh-hC---CC--------CcEEEecCCC-CCCC-------------CC-cCC-CCCEEEcCC
Confidence 468999999988 8888865 22 55 9999999874 5444 22 334 799999999
Q ss_pred CCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc
Q 035836 109 CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP 188 (380)
Q Consensus 109 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 188 (380)
|. +..+|. .+++|++|++++ +.+..+|. .+++|+.|++++ +.+..+|.. +++|++|++++| .+..+|
T Consensus 91 N~-l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 91 NQ-LTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp CC-CSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred Cc-CCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCC-CCCCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence 85 666766 679999999998 56666765 578999999998 467777764 379999999987 445555
Q ss_pred ccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc
Q 035836 189 KGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK 268 (380)
Q Consensus 189 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~ 268 (380)
. .+++|+.|++++|. ++.++ ..+++|+.|++++|.... ++ ..+++|+.|++++ +.+..++.
T Consensus 158 ~---~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~l~~-l~-------~~~~~L~~L~L~~--N~l~~l~~--- 218 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQLAS-LP-------TLPSELYKLWAYN--NRLTSLPA--- 218 (622)
T ss_dssp C---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSCCSC-CC-------CCCTTCCEEECCS--SCCSSCCC---
T ss_pred C---ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCCCCC-CC-------CccchhhEEECcC--CcccccCC---
Confidence 4 35689999999884 44455 567899999999986432 22 1357899999998 46666664
Q ss_pred cccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCC
Q 035836 269 RLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQ 348 (380)
Q Consensus 269 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 348 (380)
.+++|++|++++ +.++.+| ..+++|++|++++ +.++.+|. .+++|+.|++++|..- . ...
T Consensus 219 -------~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N~L~-~-----lp~ 278 (622)
T 3g06_A 219 -------LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRNQLT-R-----LPE 278 (622)
T ss_dssp -------CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSCCC-S-----CCG
T ss_pred -------CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCCCCC-c-----CCH
Confidence 458899999998 5888877 5568999999999 57888887 6779999999998433 1 223
Q ss_pred CCccccCcCeeEECceeeec
Q 035836 349 YWNLLTHIPYVSIDYKWVFD 368 (380)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ 368 (380)
.+..++++..+.+.++.+..
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCH
T ss_pred HHhhccccCEEEecCCCCCC
Confidence 35567788888888887653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=6.5e-18 Score=151.64 Aligned_cols=214 Identities=13% Similarity=0.082 Sum_probs=159.1
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|......|..+..+++|++|++++|. +...++ +..+++|++|+++++ .+..++. .++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCEEECC
Confidence 69999999986444556788899999999999854 443443 778999999999984 5666553 3689999999
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
+|......+. .+++|+.|++++|......+ ....+++|+.|++++|.........+ +..+++|++|++++ +
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~--N 179 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY--N 179 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT--S
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCC--C
Confidence 8654433322 36789999999885443333 33567899999999986544333222 45678999999998 4
Q ss_pred CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836 259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL 337 (380)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 337 (380)
.+..++... .+++|++|++++ +.++.++..+..+++|++|++++ +.++.+|.. ...++|+.|++++|+.
T Consensus 180 ~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 180 FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred cCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCc
Confidence 566665433 578999999998 58888877888999999999998 578888763 2356899999998875
Q ss_pred H
Q 035836 338 I 338 (380)
Q Consensus 338 l 338 (380)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 5
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=154.22 Aligned_cols=270 Identities=17% Similarity=0.141 Sum_probs=195.5
Q ss_pred CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836 6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
+.....++++ ..++.+|. ..+++|++|+++++. +..++.. .+..+++ |+.|+++++. +..+.
T Consensus 31 ~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~----- 92 (353)
T 2z80_A 31 DRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNS-DLQRCVN--------LQALVLTSNG-INTIE----- 92 (353)
T ss_dssp CTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTT-TTTTCTT--------CCEEECTTSC-CCEEC-----
T ss_pred CCCeEeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHH-HhccCCC--------CCEEECCCCc-cCccC-----
Confidence 3334455544 35666765 345799999999998 8888765 5677788 9999999873 43331
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc--cccCCCCCcEEEcccccccee
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS--GLHNLRQLQKIEIWECENLVS 162 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~ 162 (380)
++ .+..++ +|++|++++|. +..++. .+..+++|++|++++| .+..+|. .+..+++|++|+++++..+..
T Consensus 93 ~~-----~~~~l~-~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 93 ED-----SFSSLG-SLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TT-----TTTTCT-TCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred Hh-----hcCCCC-CCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc
Confidence 11 355667 69999999985 555554 4889999999999994 5666765 577899999999999766777
Q ss_pred ccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEEEecCCCCcchhhhhhc
Q 035836 163 FTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWG 239 (380)
Q Consensus 163 l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~ 239 (380)
++. .+..+++|++|++++|......|..+..+++|+.|++++|.. +.++.. ..+++|+.|++++|..........
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l- 242 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL- 242 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccc-
Confidence 654 566788999999999876666678899999999999999853 333322 347899999999986433221111
Q ss_pred cccCCCCccceeeeecCCCCCc-----ccccccccccCCCCCCCCcceEecccCCCccchhhh-hccCCCCceEeeecCC
Q 035836 240 RGFHRFSSLRRLAISGCDDDMV-----SFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSS-IVDLQNLTILQLIDCP 313 (380)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 313 (380)
......+.++.+++.+ + .+. .++... ..+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 243 ~~~~~~~~l~~l~L~~-~-~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRN-V-KITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEES-C-BCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhcccccc-c-cccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 0123456788888887 2 332 234333 4778999999999 588888885 5899999999999964
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-17 Score=157.84 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=160.9
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|......|..+..+++|++|++++|. +...++ +..+++|++|+++++ .+..++. .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence 69999999986444556788899999999999854 443333 778999999999984 6666653 3689999999
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD 258 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (380)
+|......+. .+++|+.|++++|......+ ....+++|+.|++++|......+..+ ...+++|+.|++++ +
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~--N 179 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY--N 179 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT--S
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCC--C
Confidence 8755443332 46789999999886544333 33567899999999987554333322 34689999999998 4
Q ss_pred CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836 259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL 337 (380)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 337 (380)
.+..++... .+++|++|++++ +.++.+|..+..+++|+.|++++ +.++.+|.. ...++|+.|++++|+.
T Consensus 180 ~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 180 FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 566665433 688999999998 68888887888999999999998 678788763 2357899999998876
Q ss_pred HH
Q 035836 338 IE 339 (380)
Q Consensus 338 l~ 339 (380)
.+
T Consensus 250 ~c 251 (487)
T 3oja_A 250 HC 251 (487)
T ss_dssp CH
T ss_pred cC
Confidence 63
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=2.1e-20 Score=176.74 Aligned_cols=313 Identities=20% Similarity=0.220 Sum_probs=145.2
Q ss_pred CCCCccEEEEecCCCCc----cccC-CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccc
Q 035836 4 TNSSLEILEIWVCHSLT----YIAG-VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTC 78 (380)
Q Consensus 4 ~~~~L~~L~l~~~~~~~----~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 78 (380)
.+++|++|++++|..-. .++. ...+++|++|+++++. +.+.........+... .++|++|++++|. +..
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~L~~n~-i~~ 99 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTP----SCKIQKLSLQNCC-LTG 99 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCST----TCCCCEEECTTSC-CBG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhC----CCceeEEEccCCC-CCH
Confidence 45666666666664211 1111 2335666666666665 4432222122223200 0016666666653 221
Q ss_pred ccccCCCCccccccccCCCCCCccEEEEecCCChhhhHh----h-ccCCCCccEEeecCCCCCC----cccccccCCCCC
Q 035836 79 IFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAE----R-LDNNTSLETIDISNCESLK----ILPSGLHNLRQL 149 (380)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~----~-~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L 149 (380)
.. ...++. .+..++ +|++|++++|......+. . ....++|++|++++|.... .++..+..+++|
T Consensus 100 ~~-----~~~l~~-~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 100 AG-----CGVLSS-TLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp GG-----HHHHHH-HTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred HH-----HHHHHH-HHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCC
Confidence 00 001111 234455 477777776653222121 1 1224567777777653322 123334456677
Q ss_pred cEEEccccccceecc-CCCc-----cCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCCCCCC----C-C-C
Q 035836 150 QKIEIWECENLVSFT-EGGL-----PCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGVELPS----L-E-E 213 (380)
Q Consensus 150 ~~L~l~~~~~l~~l~-~~~~-----~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~-~-~ 213 (380)
++|+++++. +.... ..+. ..++|++|++++|.... .++..+..+++|+.|++++|..... + + .
T Consensus 173 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 173 KELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251 (461)
T ss_dssp CEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence 777777643 32211 1111 13467777777664322 1344455667777777777632111 0 1 1
Q ss_pred CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccc-ccccccCCCCCCCCcceEecccCCCcc
Q 035836 214 DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL-EDKRLGTALPLPASLTSLWIEDFPNLE 292 (380)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~ 292 (380)
...+++|++|++++|...........+.+..+++|++|++++ + .+..... .... ......++|++|++++| .++
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n-~l~ 326 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-N-ELGDEGARLLCE--TLLEPGCQLESLWVKSC-SFT 326 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-C-CCHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCB
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-C-CCchHHHHHHHH--HhccCCccceeeEcCCC-CCc
Confidence 123567777777777433221100111144567777777776 2 3322111 0000 00012246777777764 333
Q ss_pred c-----hhhhhccCCCCceEeeecCCCCcccCCCC-------CcccccEEEecCch
Q 035836 293 R-----LSSSIVDLQNLTILQLIDCPKLKYFPEKG-------LPSSLLELWIWDCP 336 (380)
Q Consensus 293 ~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------~~~~L~~L~l~~c~ 336 (380)
. ++..+..+++|++|++++| .+++..... ..++|++|++++|.
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 2 3445556677777777764 444321110 02366666666664
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.3e-19 Score=173.84 Aligned_cols=301 Identities=18% Similarity=0.126 Sum_probs=149.6
Q ss_pred CCCCCccEEEEecCCCCccc---cC-C------------CCCCCCceEeecCCcCccccccccceecC--CCCccccccc
Q 035836 3 DTNSSLEILEIWVCHSLTYI---AG-V------------QLPPSLKQLRISDCDNIRTLTVEEGIQSS--SSSRRYTSYL 64 (380)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~~---~~-~------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~ 64 (380)
.++++|++|++++|..+... +. . ..+++|++|++++|. +...... .+... ..
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~-~l~~~~~~~-------- 139 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLD-RLAKARADD-------- 139 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHH-HHHHHHGGG--------
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHH-HHHHhcccc--------
Confidence 46788999999887654422 10 1 147889999998885 5433222 11111 22
Q ss_pred cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCC----
Q 035836 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESL---- 136 (380)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~---- 136 (380)
|++|++++|..+... .+.. ....+| +|++|++++|.... .++.....+++|++|+++++...
T Consensus 140 L~~L~L~~~~~~~~~--------~l~~-~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 140 LETLKLDKCSGFTTD--------GLLS-IVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp CCEEEEESCEEEEHH--------HHHH-HHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred CcEEECcCCCCcCHH--------HHHH-HHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 777777776532211 1111 012344 46666666663211 13333445566666666653322
Q ss_pred CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCC--------------------------Cccccccc
Q 035836 137 KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCE--------------------------RLEALPKG 190 (380)
Q Consensus 137 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~--------------------------~~~~~~~~ 190 (380)
..++..+.++++|+.|++++| .+..++..+..+++|+.++++... ....+|..
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 288 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred HHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence 122333344566666666653 233333333334445555444211 22233333
Q ss_pred CCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecC---------CC
Q 035836 191 LHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGC---------DD 258 (380)
Q Consensus 191 l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~ 258 (380)
+..+++|+.|++++|. ++... ....+++|+.|++.++ +........ +..+++|++|++++. |.
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~--~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHH--HHhCCCCCEEEeecCccccccccccC
Confidence 4445556666666554 22111 1234556666666522 111111111 344566666666620 12
Q ss_pred CCcc--cccccccccCCCCCCCCcceEecccCCCccchh-hhh-ccCCCCceEeeec---CCCCcccCCC-C------Cc
Q 035836 259 DMVS--FPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSI-VDLQNLTILQLID---CPKLKYFPEK-G------LP 324 (380)
Q Consensus 259 ~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~-~~~~~L~~L~l~~---c~~l~~~~~~-~------~~ 324 (380)
.+.. +.... ..+++|++|+++ |+.++... ..+ .++++|++|++++ |+.++..|.. + -.
T Consensus 364 ~~~~~~~~~l~-------~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 364 LVSQRGLIALA-------QGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp CCCHHHHHHHH-------HHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred ccCHHHHHHHH-------hhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 2221 11111 246778888884 35655432 233 3488889998873 5677765431 1 14
Q ss_pred ccccEEEecCchh
Q 035836 325 SSLLELWIWDCPL 337 (380)
Q Consensus 325 ~~L~~L~l~~c~~ 337 (380)
++|++|++++|..
T Consensus 436 ~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 436 KKLRRFAFYLRQG 448 (592)
T ss_dssp TTCCEEEEECCGG
T ss_pred CCCCEEEEecCCC
Confidence 6899999987763
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=3.7e-17 Score=140.56 Aligned_cols=204 Identities=21% Similarity=0.248 Sum_probs=130.7
Q ss_pred CCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCC
Q 035836 97 LPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKL 173 (380)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 173 (380)
+|.+|++|++++|. +..++. .+..+++|++|++++|..+..++. .+..+++|++|++++|+.++.++. .+..+++|
T Consensus 29 ~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 45578888888875 554444 677888888888888554666654 466788888888877556666654 33456677
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc-eee
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR-RLA 252 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~ 252 (380)
+.|++++|. ++.+|. +..+++|+ .|+.|++++|..+....... +..+++|+ .|+
T Consensus 108 ~~L~l~~n~-l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~ 162 (239)
T 2xwt_C 108 KFLGIFNTG-LKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNA---FQGLCNETLTLK 162 (239)
T ss_dssp CEEEEEEEC-CCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred CEEeCCCCC-Cccccc-cccccccc--------------------cccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence 777777653 333443 44444444 11245555442333333222 56677788 888
Q ss_pred eecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccC-CCCceEeeecCCCCcccCCCCCcccccEE
Q 035836 253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDL-QNLTILQLIDCPKLKYFPEKGLPSSLLEL 330 (380)
Q Consensus 253 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L 330 (380)
+++ +.+..++... +.. ++|++|+++++..++.++. .+..+ ++|++|++++ +.++.+|.. ..++|+.|
T Consensus 163 l~~--n~l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L 231 (239)
T 2xwt_C 163 LYN--NGFTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKEL 231 (239)
T ss_dssp CCS--CCCCEECTTT------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEE
T ss_pred cCC--CCCcccCHhh------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCcee
Confidence 876 4555666533 123 6788888888545777755 67777 8888888888 677777775 45588888
Q ss_pred EecCchh
Q 035836 331 WIWDCPL 337 (380)
Q Consensus 331 ~l~~c~~ 337 (380)
++.++..
T Consensus 232 ~l~~~~~ 238 (239)
T 2xwt_C 232 IARNTWT 238 (239)
T ss_dssp ECTTC--
T ss_pred eccCccC
Confidence 8887654
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=9.2e-18 Score=159.35 Aligned_cols=235 Identities=13% Similarity=0.155 Sum_probs=167.2
Q ss_pred CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
.+++|+.|+++++. +..++.. .+..++. |+.|+++++...... ++..++ +|++|++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~N~l~~~~-------------~l~~l~-~L~~L~L 87 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAA-DLAPFTK--------LELLNLSSNVLYETL-------------DLESLS-TLRTLDL 87 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGG-GGTTCTT--------CCEEECTTSCCEEEE-------------ECTTCT-TCCEEEC
T ss_pred cCCCccEEEeeCCc-CCCCCHH-HHhCCCC--------CCEEEeeCCCCCCCc-------------ccccCC-CCCEEEe
Confidence 35689999999887 7776655 5677777 999999887532222 456667 6999999
Q ss_pred ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCEEeccCCCCcc
Q 035836 107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLDIYDCERLE 185 (380)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~ 185 (380)
++|. +..++. .++|++|++++| .+..++.. .+++|+.|+++++ .+..+ +..+..+++|+.|++++|....
T Consensus 88 s~N~-l~~l~~----~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 88 NNNY-VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CSSE-EEEEEE----CTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCc-CCCCCC----CCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 9884 554443 478999999885 44444432 4678999999884 55554 4455667889999999877666
Q ss_pred cccccCC-CCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836 186 ALPKGLH-NLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP 264 (380)
Q Consensus 186 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~ 264 (380)
..|..+. .+++|+.|++++|. ++..+....+++|+.|++++|......+. +..+++|+.|++++ +.+..++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~--N~l~~lp 230 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN--NKLVLIE 230 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT--SCCCEEC
T ss_pred cChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecC--CcCcccc
Confidence 5666664 68899999999885 34445555688899999998865433222 55778899999988 4666676
Q ss_pred cccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeee
Q 035836 265 LEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLI 310 (380)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~ 310 (380)
... ..+++|+.|+++++ .+. .+|..+..++.|+.+++.
T Consensus 231 ~~l-------~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KAL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTC-------CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhh-------ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence 654 56788999999884 444 556677778888877775
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.5e-18 Score=155.36 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=123.0
Q ss_pred CCCCccEEeecCCCCCCcccccc--cCCCCCcEEEccccccceeccCCCccC-----CCCCEEeccCCCCcccccccCCC
Q 035836 121 NNTSLETIDISNCESLKILPSGL--HNLRQLQKIEIWECENLVSFTEGGLPC-----AKLTRLDIYDCERLEALPKGLHN 193 (380)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 193 (380)
.+++|++|++++|.....+|..+ ..+++|++|++++ +.+..+|..+..+ ++|++|++++|......+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56777777777755544566554 6677777777777 3455554433333 67777777776554444466777
Q ss_pred CCCccEEEeccCCCCCC---CCCC--CCCCCceEEEecCCCCcc--hhhhhhccccCCCCccceeeeecCCCCCcccc-c
Q 035836 194 LTSLQELTIGKGVELPS---LEED--GLPTNLHSLEIDGNMEIW--KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP-L 265 (380)
Q Consensus 194 ~~~L~~L~l~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~-~ 265 (380)
+++|+.|++++|..... .+.. ..+++|++|++++|.... ...... +..+++|+.|++++ +.+.... .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~ 246 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL---AAARVQLQGLDLSH--NSLRDAAGA 246 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH---HHTTCCCSEEECTT--SCCCSSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH---HhcCCCCCEEECCC--CcCCcccch
Confidence 77777777777753322 1111 456777777777775432 111111 44667888888877 3344322 1
Q ss_pred ccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCch
Q 035836 266 EDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCP 336 (380)
Q Consensus 266 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 336 (380)
.. +..+++|++|++++ +.++.+|..+. ++|++|++++ +.++.+|.-...++|++|++++++
T Consensus 247 ~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 PS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred hh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 11 13457788888887 46677766444 7788888877 567776653335677777777654
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.2e-16 Score=137.26 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=82.7
Q ss_pred CCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 96 NLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
.++ +|++|++++|..++.++. .+..+++|++|++++|+.+..++. .+..+++|++|++++ +.+..+|. +..+++|
T Consensus 53 ~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 53 NLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYST 129 (239)
T ss_dssp TCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBC
T ss_pred CCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC-CCCccccc-ccccccc
Confidence 344 466666665533443332 455566666666665344444442 345566666666666 34455554 4445555
Q ss_pred C---EEeccCCCCcccccc-cCCCCCCcc-EEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCC-C
Q 035836 174 T---RLDIYDCERLEALPK-GLHNLTSLQ-ELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF-S 246 (380)
Q Consensus 174 ~---~L~l~~~~~~~~~~~-~l~~~~~L~-~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~ 246 (380)
+ .|++++|..+..++. .+..+++|+ .|++++|.. +.++.. ...++|+.|++++|..++.++... +..+ +
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~---~~~l~~ 205 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA---FGGVYS 205 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTT---TTTCSB
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHH---hhcccc
Confidence 5 777776644554443 356667777 777766532 233221 122456666666554333332222 4455 5
Q ss_pred ccceeeeecCCCCCcccc
Q 035836 247 SLRRLAISGCDDDMVSFP 264 (380)
Q Consensus 247 ~L~~L~l~~~~~~l~~~~ 264 (380)
+|+.|++++ +.+..++
T Consensus 206 ~L~~L~l~~--N~l~~l~ 221 (239)
T 2xwt_C 206 GPSLLDVSQ--TSVTALP 221 (239)
T ss_dssp CCSEEECTT--CCCCCCC
T ss_pred CCcEEECCC--CccccCC
Confidence 666666655 3444444
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.9e-18 Score=168.54 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCCcceEecccCCCccch--hhhhccCCCCceEeeecCCCCcccCC---CCCcccccEEEecCchhHH
Q 035836 277 PASLTSLWIEDFPNLERL--SSSIVDLQNLTILQLIDCPKLKYFPE---KGLPSSLLELWIWDCPLIE 339 (380)
Q Consensus 277 ~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~ 339 (380)
+++|++|++++|. ++.. .....++++|++|++++|+. +.... ....++|++|++++|+...
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 5667777777643 4322 11336688888888888764 33211 1124688889999887633
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=4.4e-18 Score=165.94 Aligned_cols=59 Identities=20% Similarity=0.118 Sum_probs=34.2
Q ss_pred CCCCcceEecccCCCccch-hhhh-ccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCchh
Q 035836 276 LPASLTSLWIEDFPNLERL-SSSI-VDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPL 337 (380)
Q Consensus 276 ~~~~L~~L~l~~~~~l~~l-~~~~-~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~ 337 (380)
.+++|++|++++ .+... ...+ ..+++|++|++++|. +++..... -.++|++|++++|+.
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 445677777754 33322 1122 237778888887754 43321111 146899999999986
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=1.7e-15 Score=133.88 Aligned_cols=197 Identities=24% Similarity=0.257 Sum_probs=135.8
Q ss_pred CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS 81 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (380)
++.+++++.+++.++ .++.+|.. .+++++.|+++++. +..++.. .+..++. |+.|+++++. +..+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~-~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~-- 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPD-LPKDTTILHLSENL-LYTFSLA-TLMPYTR--------LTQLNLDRAE-LTKL-- 70 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSC-CCTTCCEEECTTSC-CSEEEGG-GGTTCTT--------CCEEECTTSC-CCEE--
T ss_pred ccccCCccEEECCCC-CCCcCCCC-CCCCCCEEEcCCCc-CCccCHH-HhhcCCC--------CCEEECCCCc-cCcc--
Confidence 356788999999874 66667653 35789999999887 7766655 5667777 8899888764 3333
Q ss_pred cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccc
Q 035836 82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENL 160 (380)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l 160 (380)
+ ....++ +|++|++++|. +..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+
T Consensus 71 ----~------~~~~l~-~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l 136 (290)
T 1p9a_G 71 ----Q------VDGTLP-VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NEL 136 (290)
T ss_dssp ----E------CCSCCT-TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCC
T ss_pred ----c------CCCCCC-cCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCC
Confidence 1 224555 68888888874 6677777778888888888884 454554 4467788888888887 466
Q ss_pred eeccCCC-ccCCCCCEEeccCCCCcccccc-cCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCC
Q 035836 161 VSFTEGG-LPCAKLTRLDIYDCERLEALPK-GLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 161 ~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 229 (380)
..++... ..+++|+.|++++|. ++.+|. .+..+++|+.|++++|.. +.+| .......|+.+++++|+
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCC
T ss_pred CccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCC
Confidence 6666654 457788888888764 344543 456778888888887743 3333 23445567777777665
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.8e-17 Score=157.98 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=126.7
Q ss_pred CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccceeccCCCccCCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK 172 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 172 (380)
..++ +|+.|.+.++ ....+|..+..+++|++|++++|. +.. ++..+..+++|++|++.++-.-..++.....+++
T Consensus 267 ~~~~-~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 267 VFPR-KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCT-TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hccc-cccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 3444 6888888775 345666777778888888888866 322 2223466788888888742211122222234677
Q ss_pred CCEEeccC----------CCCccc--ccccCCCCCCccEEEeccCCCCCCCC--CC-CCCCCceEEEecC---CCCcchh
Q 035836 173 LTRLDIYD----------CERLEA--LPKGLHNLTSLQELTIGKGVELPSLE--ED-GLPTNLHSLEIDG---NMEIWKS 234 (380)
Q Consensus 173 L~~L~l~~----------~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~--~~-~~~~~L~~L~l~~---~~~~~~~ 234 (380)
|++|++.+ |..++. ++.....+++|+.|.+..+ .++... .. ..+++|+.|++.+ +..++..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 88888873 444432 2222344677888887433 222211 11 2366788888763 3344432
Q ss_pred h----hhhccccCCCCccceeeeecCCCC-Cccc-ccccccccCCCCCCCCcceEecccCCCccc--hhhhhccCCCCce
Q 035836 235 T----IEWGRGFHRFSSLRRLAISGCDDD-MVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLER--LSSSIVDLQNLTI 306 (380)
Q Consensus 235 ~----~~~~~~~~~~~~L~~L~l~~~~~~-l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~ 306 (380)
+ .... +.++++|+.|++++ |.. +... .... ...+++|++|++++| .++. ++..+.++++|++
T Consensus 423 p~~~~~~~~--~~~~~~L~~L~L~~-~~~~l~~~~~~~~------~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 423 PLDNGVRSL--LIGCKKLRRFAFYL-RQGGLTDLGLSYI------GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp CCHHHHHHH--HHHCTTCCEEEEEC-CGGGCCHHHHHHH------HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCE
T ss_pred hHHHHHHHH--HHhCCCCCEEEEec-CCCCccHHHHHHH------HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCe
Confidence 1 1111 44577888888876 432 2111 1111 024567888888774 4543 3445667788888
Q ss_pred EeeecCCCCccc--CC-CCCcccccEEEecCch
Q 035836 307 LQLIDCPKLKYF--PE-KGLPSSLLELWIWDCP 336 (380)
Q Consensus 307 L~l~~c~~l~~~--~~-~~~~~~L~~L~l~~c~ 336 (380)
|++++|+ ++.. +. ....++|++|++++|.
T Consensus 493 L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 493 LEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 8888876 4331 11 0124578888888876
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3e-15 Score=132.30 Aligned_cols=191 Identities=18% Similarity=0.137 Sum_probs=120.6
Q ss_pred cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccccc
Q 035836 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLH 144 (380)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (380)
+++++++++ .++.+ + ..+++++++|++++|......+..+..+++|++|++++ +.+..++.. .
T Consensus 12 l~~l~~~~~-~l~~i-------------p-~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~ 74 (290)
T 1p9a_G 12 HLEVNCDKR-NLTAL-------------P-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-G 74 (290)
T ss_dssp CCEEECTTS-CCSSC-------------C-SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-S
T ss_pred ccEEECCCC-CCCcC-------------C-CCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-C
Confidence 777777663 34433 2 12234688888888864434456778888888888888 445555543 5
Q ss_pred CCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceE
Q 035836 145 NLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHS 222 (380)
Q Consensus 145 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~ 222 (380)
.+++|++|++++ +.+..++..+..+++|++|++++|......+..+..+++|+.|++++|.. +.++. ...+++|+.
T Consensus 75 ~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCE
Confidence 678888888887 46777777666777888888887644433335677778888888887743 33332 245667777
Q ss_pred EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEeccc
Q 035836 223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 287 (380)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 287 (380)
|++++|... .++... +..+++|+.|++++ +.+..++... ...+.|+.|++++
T Consensus 153 L~L~~N~l~-~l~~~~---~~~l~~L~~L~L~~--N~l~~ip~~~-------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 153 LSLANNNLT-ELPAGL---LNGLENLDTLLLQE--NSLYTIPKGF-------FGSHLLPFAFLHG 204 (290)
T ss_dssp EECTTSCCS-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTT-------TTTCCCSEEECCS
T ss_pred EECCCCcCC-ccCHHH---hcCcCCCCEEECCC--CcCCccChhh-------cccccCCeEEeCC
Confidence 777766432 222222 45666777777766 4555555544 2445666666665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=1.2e-15 Score=134.08 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=129.1
Q ss_pred CCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceecc-CCCccCCCC
Q 035836 97 LPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAKL 173 (380)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L 173 (380)
+|++|++|++++|. +..++ ..+..+++|++|++++| .+..++ ..+..+++|++|+++++ .+..++ ..+..+++|
T Consensus 26 l~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence 34479999998885 44443 47788899999999885 444444 35677888999999884 555555 345667888
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc--
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR-- 249 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-- 249 (380)
++|++++|......+..+..+++|+.|++++|..... ++ ....+++|++|++++|....... .. +..+++|+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~---~~~l~~L~~l 178 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TD---LRVLHQMPLL 178 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GG---GHHHHTCTTC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HH---hhhhhhcccc
Confidence 8888887654443334577788888888888754331 22 23556778888887775433221 11 33334444
Q ss_pred --eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836 250 --RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC 312 (380)
Q Consensus 250 --~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 312 (380)
.|++++ +.+..++... ....+|++|++++ +.++.++. .+..+++|++|+++++
T Consensus 179 ~l~L~ls~--n~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSL--NPMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCS--SCCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCC--CcccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 677776 4555555433 2334678888877 45666665 4567777888887774
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.8e-15 Score=136.34 Aligned_cols=238 Identities=22% Similarity=0.234 Sum_probs=108.9
Q ss_pred EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836 10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL 89 (380)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 89 (380)
.++.++ .+++.+|. ..++++++|+++++. ++.++.+ .|.++++ |++|+++++...+.+ +
T Consensus 13 ~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~-~f~~l~~--------L~~L~Ls~N~i~~~i------~--- 71 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKG-AFSGFGD--------LEKIEISQNDVLEVI------E--- 71 (350)
T ss_dssp EEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTT-SSTTCTT--------CCEEEEECCTTCCEE------C---
T ss_pred EEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHH-HHcCCCC--------CCEEECcCCCCCCcc------C---
Confidence 344444 24555554 224567777777665 6666654 4555555 666666665433222 0
Q ss_pred cccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCC
Q 035836 90 ESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGG 167 (380)
Q Consensus 90 ~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~ 167 (380)
.-.+..++ ++.++.+.++..+..+ |..+..+++|++|++++| .+..++. .+....++..+++.++..+..++...
T Consensus 72 -~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 72 -ADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp -TTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred -hhHhhcch-hhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccc
Confidence 00223344 2443333222233333 344555556666666553 3333332 22233344455554444444444322
Q ss_pred c-cC-CCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836 168 L-PC-AKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245 (380)
Q Consensus 168 ~-~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 245 (380)
. .+ ..++.|++++| .++.++..... ..+|+++++.++..++.++... |..+
T Consensus 149 f~~~~~~l~~L~L~~N-~i~~i~~~~f~-----------------------~~~L~~l~l~~~n~l~~i~~~~---f~~l 201 (350)
T 4ay9_X 149 FVGLSFESVILWLNKN-GIQEIHNSAFN-----------------------GTQLDELNLSDNNNLEELPNDV---FHGA 201 (350)
T ss_dssp STTSBSSCEEEECCSS-CCCEECTTSST-----------------------TEEEEEEECTTCTTCCCCCTTT---TTTE
T ss_pred hhhcchhhhhhccccc-cccCCChhhcc-----------------------ccchhHHhhccCCcccCCCHHH---hccC
Confidence 1 11 23444444432 22233322222 2344444444444444333322 4555
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeee
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLI 310 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 310 (380)
++|+.|++++ +.+..++.. .+.+|+.|.+.++..++.+| .+.++++|+.+++.
T Consensus 202 ~~L~~LdLs~--N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 202 SGPVILDISR--TRIHSLPSY---------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp ECCSEEECTT--SCCCCCCSS---------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred cccchhhcCC--CCcCccChh---------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 5666666655 345555541 23455555555555555555 35555566666554
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=8e-15 Score=133.31 Aligned_cols=222 Identities=21% Similarity=0.201 Sum_probs=167.2
Q ss_pred CCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCC
Q 035836 97 LPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKL 173 (380)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L 173 (380)
+|+++++|++++|. ++.+|. .+.++++|++|++++|...+.++.. +.++++++.+....++.+..++.. +..+++|
T Consensus 28 l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 45589999999985 777765 6899999999999997777777754 567888887766666788888654 5668999
Q ss_pred CEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCCC---CCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 174 TRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEED---GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
+.|++++|.. ..++ ..+.....+..|.+.++..+..++.. .....++.|++++|.... +... .....+|+
T Consensus 107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~----~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNS----AFNGTQLD 180 (350)
T ss_dssp CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTT----SSTTEEEE
T ss_pred cccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChh----hccccchh
Confidence 9999998654 4443 33445556778888777666655532 234579999999986433 3322 22456899
Q ss_pred eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccE
Q 035836 250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLE 329 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 329 (380)
+|.+.+ ++.++.++... +..+++|++|++++ +.++.+|. ..+.+|++|.+.+++.++.+|.-.-.++|+.
T Consensus 181 ~l~l~~-~n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 181 ELNLSD-NNNLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp EEECTT-CTTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred HHhhcc-CCcccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhh
Confidence 999988 78899988643 35789999999999 68999886 3367888899999999999998555679999
Q ss_pred EEecCc
Q 035836 330 LWIWDC 335 (380)
Q Consensus 330 L~l~~c 335 (380)
+++.+.
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 998753
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=5.2e-17 Score=146.94 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=104.3
Q ss_pred ccEEEEecCCChhhhHhhccCC--CCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEE
Q 035836 101 LRSLYVSHCSKLESIAERLDNN--TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRL 176 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L 176 (380)
++.++++++... +..+..+ ++++.|+++++. +...+..+..+++|++|++++|. +.. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence 555565554321 2222233 456666666532 22223334455666666666543 221 33334445566666
Q ss_pred eccCCCCcccccccCCCCCCccEEEeccCCCCCC--CCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCC-ccceee
Q 035836 177 DIYDCERLEALPKGLHNLTSLQELTIGKGVELPS--LEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS-SLRRLA 252 (380)
Q Consensus 177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~ 252 (380)
++++|......+..+..+++|+.|++++|..++. ++. ...+++|++|++++|..++....... +..++ +|++|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEE
Confidence 6666543334444455566666666666533331 221 23455666666666633333211111 44555 666666
Q ss_pred eecCCC-CC--cccccccccccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCcccCC--CCCccc
Q 035836 253 ISGCDD-DM--VSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYFPE--KGLPSS 326 (380)
Q Consensus 253 l~~~~~-~l--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~ 326 (380)
+++ |. .+ ..++... ..+++|++|++++|..++ ..+..+..+++|++|++++|..+..... -.-.++
T Consensus 202 l~~-~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 202 LSG-YRKNLQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CCS-CGGGSCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred eCC-CcccCCHHHHHHHH-------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 666 32 22 2222222 245566666666654333 2233555566666666666553322110 011345
Q ss_pred ccEEEecCc
Q 035836 327 LLELWIWDC 335 (380)
Q Consensus 327 L~~L~l~~c 335 (380)
|++|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 666666665
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.9e-15 Score=134.82 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=153.2
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
...++ +|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .+..++ .+..+++|
T Consensus 37 ~~~l~-~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLD-GITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSI 109 (308)
T ss_dssp HHHHH-TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTC
T ss_pred HHHcC-CcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCC
Confidence 33456 69999999984 56665 5778999999999985 5666666 888999999999984 566664 56678899
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI 253 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 253 (380)
++|++++|. +..++. +..+++|+.|++++|. ++.++....+++|+.|++++|... .... +..+++|+.|++
T Consensus 110 ~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-----l~~l~~L~~L~l 180 (308)
T 1h6u_A 110 KTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVS-DLTP-----LANLSKLTTLKA 180 (308)
T ss_dssp CEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-CCGG-----GTTCTTCCEEEC
T ss_pred CEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCC-CChh-----hcCCCCCCEEEC
Confidence 999999875 444543 7889999999999984 344444667889999999998543 3333 668899999999
Q ss_pred ecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 254 SGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
++ +.+..++. . ..+++|++|++++ +.+..++ .+..+++|++|++++ +.++..+.
T Consensus 181 ~~--n~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 181 DD--NKISDISP-L-------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp CS--SCCCCCGG-G-------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred CC--CccCcChh-h-------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence 98 45666654 2 4778999999999 5777777 488899999999998 44665444
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=5e-15 Score=129.62 Aligned_cols=62 Identities=23% Similarity=0.439 Sum_probs=31.7
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC 312 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 312 (380)
+..+++|+.|++++ +.+..++... +..+++|++|++++ +.++.++. .+..+++|+.|+++++
T Consensus 153 ~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 153 FDKLTSLKELRLYN--NQLKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCcccceeEecC--CcCcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence 44455566666655 2343333321 13445566666665 34555544 3555666666666653
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.3e-15 Score=136.03 Aligned_cols=196 Identities=18% Similarity=0.212 Sum_probs=134.2
Q ss_pred CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836 26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY 105 (380)
Q Consensus 26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 105 (380)
..+++|++|++.++. +..++ .+..+++ |+.|+++++. +..+ + ++..++ +|++|+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~---~~~~l~~--------L~~L~L~~n~-i~~~------~------~~~~l~-~L~~L~ 91 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIE---GVQYLNN--------LIGLELKDNQ-ITDL------A------PLKNLT-KITELE 91 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCT---TGGGCTT--------CCEEECCSSC-CCCC------G------GGTTCC-SCCEEE
T ss_pred HHcCCcCEEEeeCCC-ccCch---hhhccCC--------CCEEEccCCc-CCCC------h------hHccCC-CCCEEE
Confidence 346778888888776 66655 2556666 8888888763 3333 1 245566 588888
Q ss_pred EecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcc
Q 035836 106 VSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLE 185 (380)
Q Consensus 106 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 185 (380)
+++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .+..++. +..+++|+.|++++|. +.
T Consensus 92 L~~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~ 164 (308)
T 1h6u_A 92 LSGNP-LKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VS 164 (308)
T ss_dssp CCSCC-CSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred ccCCc-CCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CC
Confidence 88875 55554 5777888888888884 4555553 677888888888874 5555554 5567788888888864 44
Q ss_pred cccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836 186 ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP 264 (380)
Q Consensus 186 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~ 264 (380)
.++. +..+++|+.|++++|.. +.++....+++|+.|++++|...... . +..+++|+.|++++ +.+...+
T Consensus 165 ~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~N~l~~~~-~-----l~~l~~L~~L~l~~--N~i~~~~ 233 (308)
T 1h6u_A 165 DLTP-LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVS-P-----LANTSNLFIVTLTN--QTITNQP 233 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECTTSCCCBCG-G-----GTTCTTCCEEEEEE--EEEECCC
T ss_pred CChh-hcCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEccCCccCccc-c-----ccCCCCCCEEEccC--CeeecCC
Confidence 4544 77788888888888743 44444567788999999888644332 2 66788999999988 3444443
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=2.1e-16 Score=141.38 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=151.9
Q ss_pred CCCCCccEEEEecCCChhhhHhhc--cCCCCccEEeecCCCCCCcccccccCC-----CCCcEEEccccccceecc-CCC
Q 035836 96 NLPPSLRSLYVSHCSKLESIAERL--DNNTSLETIDISNCESLKILPSGLHNL-----RQLQKIEIWECENLVSFT-EGG 167 (380)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~l~-~~~ 167 (380)
.++ +|++|++++|.....+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++ +.+..++ ..+
T Consensus 93 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQV 169 (312)
T ss_dssp TTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTC
T ss_pred CcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHh
Confidence 466 69999999996545677765 889999999999954 54446656555 8999999998 4566666 566
Q ss_pred ccCCCCCEEeccCCCCccc--ccccC--CCCCCccEEEeccCCCCCCCCC-----CCCCCCceEEEecCCCCcchhhhhh
Q 035836 168 LPCAKLTRLDIYDCERLEA--LPKGL--HNLTSLQELTIGKGVELPSLEE-----DGLPTNLHSLEIDGNMEIWKSTIEW 238 (380)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (380)
..+++|++|++++|..... ++..+ ..+++|+.|++++|.. +.++. ...+++|+.|++++|......+...
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 7789999999999875543 33333 7899999999999854 32211 1356899999999987544332111
Q ss_pred ccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcc
Q 035836 239 GRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKY 317 (380)
Q Consensus 239 ~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 317 (380)
+..+++|+.|++++ +.+..++... . ++|++|++++ +.++.+|. +..+++|++|++++ +.++.
T Consensus 249 ---~~~l~~L~~L~Ls~--N~l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 249 ---CDWPSQLNSLNLSF--TGLKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp ---CCCCTTCCEEECTT--SCCSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT-CTTTC
T ss_pred ---hhhcCCCCEEECCC--CccChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC-CCCCC
Confidence 55689999999998 5666777644 2 8999999999 68888876 88999999999998 44543
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=5.4e-15 Score=129.81 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=151.7
Q ss_pred hhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccc
Q 035836 112 LESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPK 189 (380)
Q Consensus 112 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 189 (380)
+..+|..+ .++|++|++++| .+..++. .+.++++|++|+++++ .+..++. .+..+++|++|++++|......+.
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCC--CCCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 33455544 257999999995 5555554 6788999999999995 6676665 566789999999999766555557
Q ss_pred cCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc
Q 035836 190 GLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK 268 (380)
Q Consensus 190 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~ 268 (380)
.+..+++|+.|++++|......+ ....+++|++|++++|.......+.. +..+++|+.|++++ +.+..++...
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~- 168 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSS--NKIQSIYCTD- 168 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---GGGCTTCCEEECCS--SCCCEECGGG-
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh---hccCCCCCEEECCC--CCCCcCCHHH-
Confidence 78899999999999985443333 35678999999999987544221222 77889999999998 4566554322
Q ss_pred cccCCCCCCCCcc----eEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCc
Q 035836 269 RLGTALPLPASLT----SLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDC 335 (380)
Q Consensus 269 ~~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c 335 (380)
+..+++|+ +|++++ +.++.++.......+|++|++++ +.++.++...+ .++|+.|+++++
T Consensus 169 -----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 169 -----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp -----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred -----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 12344555 889998 67888877555566899999999 56888877543 578999999843
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=2.4e-17 Score=155.75 Aligned_cols=308 Identities=19% Similarity=0.131 Sum_probs=146.1
Q ss_pred CCCCCccEEEEecCCCCccccC---CCCCC----CCceEeecCCcCccccc----cccceecCCCCccccccccceeEee
Q 035836 3 DTNSSLEILEIWVCHSLTYIAG---VQLPP----SLKQLRISDCDNIRTLT----VEEGIQSSSSSRRYTSYLLEELRIC 71 (380)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~----~L~~L~l~~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~ 71 (380)
..+++|++|+++++. +..... ...++ +|++|++++|. +.... .. .+..++. |++|+++
T Consensus 53 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~-~l~~~~~--------L~~L~Ls 121 (461)
T 1z7x_W 53 RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSS-TLRTLPT--------LQELHLS 121 (461)
T ss_dssp HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHH-HTTSCTT--------CCEEECC
T ss_pred HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHH-HHccCCc--------eeEEECC
Confidence 456889999998874 332111 11223 79999999887 65422 11 3555666 8888888
Q ss_pred cCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCCccccccc---
Q 035836 72 SCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLKILPSGLH--- 144 (380)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 144 (380)
++. +.... +..+...-....+ +|++|++++|.... .++..+..+++|++|++++|.....-+..+.
T Consensus 122 ~n~-i~~~~-----~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 194 (461)
T 1z7x_W 122 DNL-LGDAG-----LQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194 (461)
T ss_dssp SSB-CHHHH-----HHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCc-CchHH-----HHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHH
Confidence 765 32210 0011100011223 47777777764322 3455556667777777776542211111111
Q ss_pred --CCCCCcEEEcccccccee-----ccCCCccCCCCCEEeccCCCCccc----c-cccCCCCCCccEEEeccCCCCCC--
Q 035836 145 --NLRQLQKIEIWECENLVS-----FTEGGLPCAKLTRLDIYDCERLEA----L-PKGLHNLTSLQELTIGKGVELPS-- 210 (380)
Q Consensus 145 --~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~----~-~~~l~~~~~L~~L~l~~~~~~~~-- 210 (380)
..++|++|++++| .+.. ++..+..+++|++|++++|..... + +.....+++|+.|++++|.. +.
T Consensus 195 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~ 272 (461)
T 1z7x_W 195 KDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKG 272 (461)
T ss_dssp HHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHH
T ss_pred hcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHH
Confidence 2456777777664 3332 233333456677777776532211 1 11223456677777776632 22
Q ss_pred ---CC-CCCCCCCceEEEecCCCCcchhhhhhccc-cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEec
Q 035836 211 ---LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG-FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI 285 (380)
Q Consensus 211 ---~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 285 (380)
++ ....+++|++|++++|...........+. ....++|++|++++ |. +..... ..+...+..+++|++|++
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~-l~~~~~--~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CS-FTAACC--SHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SC-CBGGGH--HHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CC-CchHHH--HHHHHHHhhCCCccEEEc
Confidence 11 11235566677766664322111111000 11224666666666 32 221100 000001123456666666
Q ss_pred ccCCCccchhh-hhc-----cCCCCceEeeecCCCCcc-----cCCC-CCcccccEEEecCch
Q 035836 286 EDFPNLERLSS-SIV-----DLQNLTILQLIDCPKLKY-----FPEK-GLPSSLLELWIWDCP 336 (380)
Q Consensus 286 ~~~~~l~~l~~-~~~-----~~~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~ 336 (380)
+++ .+..... .+. ..++|++|++++| .++. ++.. ...++|++|++++|+
T Consensus 349 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 349 SNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 663 4443211 111 1456666666664 3432 2210 012456666666654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.2e-17 Score=149.38 Aligned_cols=106 Identities=11% Similarity=0.228 Sum_probs=46.4
Q ss_pred CccEEEEecCCChhh-hHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEE
Q 035836 100 SLRSLYVSHCSKLES-IAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L 176 (380)
+|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..+.. ++..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 355555555532112 444455555555555555432223333444455555555555433331 22223334455555
Q ss_pred eccCCCCccc--ccccCCCCC-CccEEEeccC
Q 035836 177 DIYDCERLEA--LPKGLHNLT-SLQELTIGKG 205 (380)
Q Consensus 177 ~l~~~~~~~~--~~~~l~~~~-~L~~L~l~~~ 205 (380)
++++|..++. ++..+..++ +|+.|++++|
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5555422221 223333344 4444444444
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.4e-14 Score=125.26 Aligned_cols=147 Identities=26% Similarity=0.297 Sum_probs=64.3
Q ss_pred ccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836 101 LRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD 177 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 177 (380)
|++|++++|. +..++. .+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++.. +..+++|++|+
T Consensus 63 L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 63 LRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEE
Confidence 5555554442 222222 2344555555555542 2333332 234455555555554 233333332 23345555555
Q ss_pred ccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 178 IYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
+++|. +..++ ..+..+++|+.|++++|......+. ...+++|+.|++++|... ..+... +..+++|+.|++++
T Consensus 140 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 140 LGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA---FDSLEKLKMLQLQE 214 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCS
T ss_pred CCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHH---hccccCCCEEEecC
Confidence 55542 22222 2244555555555555432221111 234455555555555322 222211 44566666666665
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1e-14 Score=127.71 Aligned_cols=147 Identities=24% Similarity=0.235 Sum_probs=72.1
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD 177 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 177 (380)
+|++|++++|. +..+ ..+..+++|++|++++| .+..++. .+..+++|++|+++++ .+..++.. +..+++|+.|+
T Consensus 64 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 64 NVRYLALGGNK-LHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TCCEEECTTSC-CCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEECCCCC-CCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEE
Confidence 35555555553 3322 24455556666666553 2333332 2445556666666552 34444433 33455566666
Q ss_pred ccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
+++|......+..+..+++|+.|++++|.. +.++. ...+++|+.|++++|.... ..... +..+++|+.|++++
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~---~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGV---FDRLTSLQYIWLHD 214 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT---TTTCTTCCEEECCS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECCCCcCCc-cCHHH---HhCCcCCCEEEccC
Confidence 665432222223345556666666666532 22222 2445666666666654332 22211 45666677777766
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4e-15 Score=130.34 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=136.6
Q ss_pred CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEE
Q 035836 25 VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSL 104 (380)
Q Consensus 25 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L 104 (380)
...+++|+.|++.++. +..++ .+..++. |+.|+++++. +..+ + .+..++ +|++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~---~l~~l~~--------L~~L~l~~n~-l~~~------~------~l~~l~-~L~~L 90 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQ---GIQYLPN--------VRYLALGGNK-LHDI------S------ALKELT-NLTYL 90 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCT---TGGGCTT--------CCEEECTTSC-CCCC------G------GGTTCT-TCCEE
T ss_pred cccccceeeeeeCCCC-ccccc---ccccCCC--------CcEEECCCCC-CCCc------h------hhcCCC-CCCEE
Confidence 3446788888888876 66554 3456666 8888888764 3322 1 355666 58888
Q ss_pred EEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccCCC
Q 035836 105 YVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCE 182 (380)
Q Consensus 105 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~ 182 (380)
++++|......+..+..+++|++|++++|. +..++. .+..+++|++|+++++ .+..++... ..+++|+.|++++|.
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC
Confidence 888875333334456788889999998854 444443 4677888999999884 666666543 567889999998875
Q ss_pred CcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCc
Q 035836 183 RLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMV 261 (380)
Q Consensus 183 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~ 261 (380)
.....+..+..+++|+.|++++|......+. ...+++|+.|++++|.. ...+++|+.|+++. +....
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~l~~~~-n~~~g 236 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWI-NKHSG 236 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-----------CCCTTTTHHHHHHH-HHTGG
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-----------cccCcHHHHHHHHH-HhCCC
Confidence 4433334567888999999988854433332 35678899999988852 33567788888776 44444
Q ss_pred cccccc
Q 035836 262 SFPLED 267 (380)
Q Consensus 262 ~~~~~~ 267 (380)
.+|...
T Consensus 237 ~ip~~~ 242 (272)
T 3rfs_A 237 VVRNSA 242 (272)
T ss_dssp GBBCTT
T ss_pred cccCcc
Confidence 555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=132.09 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=139.5
Q ss_pred CccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCCcccccc--cCCCCCcEEEccccccceec-c----CCCc
Q 035836 100 SLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLKILPSGL--HNLRQLQKIEIWECENLVSF-T----EGGL 168 (380)
Q Consensus 100 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l-~----~~~~ 168 (380)
.++.+.+.++.... .+.. +..+++|++|++++|......|..+ ..+++|++|+++++ .+... + ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 37788887764322 1222 2234678999998876666666665 77888999998884 34331 1 1223
Q ss_pred cCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC--C---CCCCCCCCceEEEecCCCCcchhh-hhhcccc
Q 035836 169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS--L---EEDGLPTNLHSLEIDGNMEIWKST-IEWGRGF 242 (380)
Q Consensus 169 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 242 (380)
.+++|++|++++|......+..+..+++|+.|++++|..... + .....+++|++|++++|....... ..+. +
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--A 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--H
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--H
Confidence 467888888888766555556777888888888888754321 1 112456788888888876432111 1111 3
Q ss_pred CCCCccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC
Q 035836 243 HRFSSLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK 321 (380)
Q Consensus 243 ~~~~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 321 (380)
..+++|++|++++ +.+..+ +.... .+..+++|++|++++ +.++.+|..+. ++|++|++++ +.++.+|.-
T Consensus 221 ~~l~~L~~L~Ls~--N~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~ 290 (310)
T 4glp_A 221 AAGVQPHSLDLSH--NSLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQP 290 (310)
T ss_dssp HHTCCCSSEECTT--SCCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCT
T ss_pred hcCCCCCEEECCC--CCCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchh
Confidence 4667888888887 344443 43331 112236888888887 57777776543 7888888887 567766553
Q ss_pred CCcccccEEEecCch
Q 035836 322 GLPSSLLELWIWDCP 336 (380)
Q Consensus 322 ~~~~~L~~L~l~~c~ 336 (380)
...++|+.|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 345678888887754
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=132.00 Aligned_cols=200 Identities=18% Similarity=0.119 Sum_probs=142.0
Q ss_pred CccEEEEecCCChhhhHhhc--cCCCCccEEeecCCCCCCccc----ccccCCCCCcEEEccccccceecc-CCCccCCC
Q 035836 100 SLRSLYVSHCSKLESIAERL--DNNTSLETIDISNCESLKILP----SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAK 172 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~ 172 (380)
+|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|+++++ .+..++ ..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCC
Confidence 59999999987555666666 788999999999865544333 23446889999999884 555555 45567889
Q ss_pred CCEEeccCCCCccc--cc--ccCCCCCCccEEEeccCCCCCCCCC-----CCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836 173 LTRLDIYDCERLEA--LP--KGLHNLTSLQELTIGKGVELPSLEE-----DGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 243 (380)
Q Consensus 173 L~~L~l~~~~~~~~--~~--~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (380)
|++|++++|..... ++ ..+..+++|+.|++++|.. +.++. ...+++|++|++++|......+..+. .+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc
Confidence 99999998865432 22 2346788999999998843 33332 23568999999999875443222111 133
Q ss_pred CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc
Q 035836 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK 316 (380)
Q Consensus 244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 316 (380)
.+++|++|++++ +.+..++... +++|++|++++ +.++.+|. +..+++|+.|+++++ .++
T Consensus 249 ~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST-TTS
T ss_pred CcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC-CCC
Confidence 347999999998 5666777643 37999999999 68888764 788899999999984 443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.4e-15 Score=140.34 Aligned_cols=209 Identities=15% Similarity=0.086 Sum_probs=126.2
Q ss_pred cCCCCCCccEEEEecCC--Chh-hhH-------hhccCCCCccEEeecCCCCCC----cccccccCCCCCcEEEcccccc
Q 035836 94 VGNLPPSLRSLYVSHCS--KLE-SIA-------ERLDNNTSLETIDISNCESLK----ILPSGLHNLRQLQKIEIWECEN 159 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~--~~~-~~~-------~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 159 (380)
+..++ +|++|++++|. .+. .+| ..+..+++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 56 l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 133 (386)
T 2ca6_A 56 IASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG- 133 (386)
T ss_dssp TTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-
T ss_pred HHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-
Confidence 33455 57777777752 111 223 334677888888888754433 255566677888888887753
Q ss_pred cee-----ccCCCccC---------CCCCEEeccCCCCc-cccc---ccCCCCCCccEEEeccCCCCC-----CCC-CCC
Q 035836 160 LVS-----FTEGGLPC---------AKLTRLDIYDCERL-EALP---KGLHNLTSLQELTIGKGVELP-----SLE-EDG 215 (380)
Q Consensus 160 l~~-----l~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~-~~~ 215 (380)
+.. ++..+..+ ++|++|++++|... ..++ ..+..+++|+.|++++|.... ..+ ...
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 321 11111122 68888888876543 2333 345567788888888874321 122 345
Q ss_pred CCCCceEEEecCCCCc----chhhhhhccccCCCCccceeeeecCCCCCccc-----ccccccccCCCCCCCCcceEecc
Q 035836 216 LPTNLHSLEIDGNMEI----WKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF-----PLEDKRLGTALPLPASLTSLWIE 286 (380)
Q Consensus 216 ~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~ 286 (380)
.+++|+.|++++|... ..++. . +..+++|+.|++++ |. +... +.... ...+++|++|+++
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~-~---l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~l~-----~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAI-A---LKSWPNLRELGLND-CL-LSARGAAAVVDAFS-----KLENIGLQTLRLQ 282 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHH-H---GGGCTTCCEEECTT-CC-CCHHHHHHHHHHHH-----TCSSCCCCEEECC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHH-H---HccCCCcCEEECCC-CC-CchhhHHHHHHHHh-----hccCCCeEEEECc
Confidence 6778888888887642 11221 1 66788899999988 33 4332 22110 0136789999998
Q ss_pred cCCCccc-----hhhhh-ccCCCCceEeeecCCCCcc
Q 035836 287 DFPNLER-----LSSSI-VDLQNLTILQLIDCPKLKY 317 (380)
Q Consensus 287 ~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~ 317 (380)
+| .+.. ++..+ .++++|++|++++| .++.
T Consensus 283 ~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 283 YN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp SS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred CC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 84 5665 67655 66899999999885 3443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=4.7e-13 Score=115.68 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=30.4
Q ss_pred cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID 311 (380)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 311 (380)
+..+++|+.|++++ +.+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 127 ~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 127 FDRLTKLKELRLNT--NQLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTCTTCCEEECCS--SCCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCcccEEECcC--CcCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 34455555555555 2444443311 13445555555555 34444443 455555666666655
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=5.5e-13 Score=115.27 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=78.8
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCCC-ccCC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEGG-LPCA 171 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~ 171 (380)
+..++ +|++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++... ..++
T Consensus 55 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 55 FRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred hcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCC
Confidence 34445 4777777666433333444566777777777764 333343 3345677777777776 3556655543 4466
Q ss_pred CCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCC
Q 035836 172 KLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNME 230 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 230 (380)
+|+.|++++|.. +.++ ..+..+++|+.|++++|......+ ....+++|+.|++++|..
T Consensus 132 ~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 132 KLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 777777776533 3343 356677777777777764332222 234567788888877753
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=4.4e-13 Score=111.41 Aligned_cols=151 Identities=18% Similarity=0.217 Sum_probs=100.6
Q ss_pred CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836 27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV 106 (380)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 106 (380)
.+++|+.|+++++. +..++ .+..+++ |++|++++| .+..+ + .+..++ +|++|++
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~---~l~~l~~--------L~~L~l~~n-~~~~~------~------~l~~l~-~L~~L~l 95 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT---GIEYAHN--------IKDLTINNI-HATNY------N------PISGLS-NLERLRI 95 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT---TGGGCTT--------CSEEEEESC-CCSCC------G------GGTTCT-TCCEEEE
T ss_pred hcCCccEEeccCCC-ccChH---HHhcCCC--------CCEEEccCC-CCCcc------h------hhhcCC-CCCEEEe
Confidence 35677777777776 66555 2555666 788888776 33322 1 344556 5888888
Q ss_pred ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccc
Q 035836 107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA 186 (380)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 186 (380)
++|......+..+..+++|++|++++|......+..+..+++|++|++++|..+..++ .+..+++|+.|++++|. +..
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~ 173 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHD 173 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcC
Confidence 8775444466677778888888888755544456667778888888888754466665 45567788888888764 334
Q ss_pred ccccCCCCCCccEEEeccCC
Q 035836 187 LPKGLHNLTSLQELTIGKGV 206 (380)
Q Consensus 187 ~~~~l~~~~~L~~L~l~~~~ 206 (380)
++ .+..+++|+.|++++|.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC-
T ss_pred hH-HhccCCCCCEEEeeCcc
Confidence 44 56677888888888764
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=4.6e-13 Score=118.35 Aligned_cols=163 Identities=18% Similarity=0.301 Sum_probs=84.0
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|+++++ .+..++. +..+++|++|+++
T Consensus 47 ~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCC-cccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECC
Confidence 46666666653 33333 2455666666666663 3333433 555666666666552 3443332 3444555555555
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDD 259 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 259 (380)
+|. +..+ ..+..+++|+.|+++ +|.... ... +..+++|+.|++++ +.
T Consensus 121 ~n~-i~~~-~~l~~l~~L~~L~l~-----------------------~n~l~~-~~~-----l~~l~~L~~L~L~~--N~ 167 (291)
T 1h6t_A 121 HNG-ISDI-NGLVHLPQLESLYLG-----------------------NNKITD-ITV-----LSRLTKLDTLSLED--NQ 167 (291)
T ss_dssp TSC-CCCC-GGGGGCTTCCEEECC-----------------------SSCCCC-CGG-----GGGCTTCSEEECCS--SC
T ss_pred CCc-CCCC-hhhcCCCCCCEEEcc-----------------------CCcCCc-chh-----hccCCCCCEEEccC--Cc
Confidence 542 2222 223344444444444 443221 111 44566666666665 24
Q ss_pred CcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836 260 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID 311 (380)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 311 (380)
+..++. . ..+++|++|++++ +.++.++ .+..+++|+.|++++
T Consensus 168 l~~~~~-l-------~~l~~L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 168 ISDIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp CCCCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred cccchh-h-------cCCCccCEEECCC-CcCCCCh-hhccCCCCCEEECcC
Confidence 444433 2 3556677777766 4566655 366667777777766
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.2e-14 Score=133.88 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=156.3
Q ss_pred CCCCCCccEEEEecCCChhh----hHhhccCCCCccEEeecCCC--CC-Ccccccc-------cCCCCCcEEEccccccc
Q 035836 95 GNLPPSLRSLYVSHCSKLES----IAERLDNNTSLETIDISNCE--SL-KILPSGL-------HNLRQLQKIEIWECENL 160 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~~-------~~l~~L~~L~l~~~~~l 160 (380)
..++ +|++|++++|..... +...+..+++|++|++++|. .+ ..+|..+ ..+++|++|+++++ .+
T Consensus 29 ~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 29 LEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred hcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 3455 699999999853333 44557789999999999862 22 2334443 67899999999985 44
Q ss_pred ee-----ccCCCccCCCCCEEeccCCCCccc----ccccCCCC---------CCccEEEeccCCCC-CCCC----CCCCC
Q 035836 161 VS-----FTEGGLPCAKLTRLDIYDCERLEA----LPKGLHNL---------TSLQELTIGKGVEL-PSLE----EDGLP 217 (380)
Q Consensus 161 ~~-----l~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~---------~~L~~L~l~~~~~~-~~~~----~~~~~ 217 (380)
.. ++..+..+++|++|++++|..... ++..+..+ ++|+.|++++|... ..++ ....+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 43 454556689999999999865322 22333334 89999999998543 1222 12356
Q ss_pred CCceEEEecCCCCcchhhhhhcc-ccCCCCccceeeeecCCCCC-----cccccccccccCCCCCCCCcceEecccCCCc
Q 035836 218 TNLHSLEIDGNMEIWKSTIEWGR-GFHRFSSLRRLAISGCDDDM-----VSFPLEDKRLGTALPLPASLTSLWIEDFPNL 291 (380)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 291 (380)
++|++|++++|.....-...... .+..+++|+.|++++ | .+ ..++... ..+++|++|++++| .+
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n-~i 256 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDC-LL 256 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTC-CC
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCCCcCEEECCCC-CC
Confidence 79999999999654221111101 277889999999998 4 34 3444433 57789999999995 56
Q ss_pred cch-----hhhhcc--CCCCceEeeecCCCCcc-----cCCCC--CcccccEEEecCch
Q 035836 292 ERL-----SSSIVD--LQNLTILQLIDCPKLKY-----FPEKG--LPSSLLELWIWDCP 336 (380)
Q Consensus 292 ~~l-----~~~~~~--~~~L~~L~l~~c~~l~~-----~~~~~--~~~~L~~L~l~~c~ 336 (380)
... +..+.. +++|++|++++| .++. ++... ..++|++|++++|+
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 543 445533 899999999995 5655 54421 14789999999885
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=4e-13 Score=111.65 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee-ccCCCccCCCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS-FTEGGLPCAKL 173 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L 173 (380)
..++ +|++|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|+++++ .+.. .+..+..+++|
T Consensus 41 ~~l~-~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMN-SLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHH-TCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred hhcC-CccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 3444 58888888874 55665 5777888888888875 444443 5667888888888874 4443 45566667788
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI 253 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 253 (380)
++|++++|......+..+..+++|+.|++++|..++.++....+++|+.|++++|.... ... +..+++|+.|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~~-----l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YRG-----IEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CTT-----GGGCSSCCEEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hHH-----hccCCCCCEEEe
Confidence 88888876655555566777778888888877545555544556666666666654322 211 445566666666
Q ss_pred ec
Q 035836 254 SG 255 (380)
Q Consensus 254 ~~ 255 (380)
++
T Consensus 189 ~~ 190 (197)
T 4ezg_A 189 FS 190 (197)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=8.2e-13 Score=116.72 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=95.8
Q ss_pred CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 170 CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 170 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
+++|++|++++|. +..++. +..+++|+.|++++|. ++.++....+++|+.|++++|.... ... +..+++|+
T Consensus 67 l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~-~~~-----l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISD-ING-----LVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCC-CGG-----GGGCTTCC
T ss_pred CCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCC-Chh-----hcCCCCCC
Confidence 4444444444432 222222 4445555555555542 2333334455666666666664322 221 66789999
Q ss_pred eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccE
Q 035836 250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLE 329 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 329 (380)
.|++++ +.+..++. . ..+++|++|++++ +.++.++. +..+++|++|++++ +.++.++.-.-.++|+.
T Consensus 138 ~L~l~~--n~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~ 204 (291)
T 1h6t_A 138 SLYLGN--NKITDITV-L-------SRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDV 204 (291)
T ss_dssp EEECCS--SCCCCCGG-G-------GGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSE
T ss_pred EEEccC--CcCCcchh-h-------ccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCC-CcCCCChhhccCCCCCE
Confidence 999998 45666532 2 4789999999999 57887775 88999999999999 57888766444679999
Q ss_pred EEecCchh
Q 035836 330 LWIWDCPL 337 (380)
Q Consensus 330 L~l~~c~~ 337 (380)
|++++|+-
T Consensus 205 L~l~~n~i 212 (291)
T 1h6t_A 205 LELFSQEC 212 (291)
T ss_dssp EEEEEEEE
T ss_pred EECcCCcc
Confidence 99998753
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=3.4e-14 Score=129.74 Aligned_cols=231 Identities=16% Similarity=0.075 Sum_probs=145.4
Q ss_pred cCCCCCCccEEEEecCCChhhh-H----hhccCCC-CccEEeecCCCCCCcccccccCC-----CCCcEEEcccccccee
Q 035836 94 VGNLPPSLRSLYVSHCSKLESI-A----ERLDNNT-SLETIDISNCESLKILPSGLHNL-----RQLQKIEIWECENLVS 162 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~-~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~ 162 (380)
+...+++|++|++++|. +... + ..+..++ +|++|++++|......+..+..+ ++|++|++++| .+..
T Consensus 17 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 94 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSY 94 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred HHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCCh
Confidence 34556579999999986 5433 2 6677888 99999999964433333334332 89999999985 4543
Q ss_pred ccCC-----CccC-CCCCEEeccCCCCcccccc----cCCC-CCCccEEEeccCCCCCCC----CC-C-CCCCCceEEEe
Q 035836 163 FTEG-----GLPC-AKLTRLDIYDCERLEALPK----GLHN-LTSLQELTIGKGVELPSL----EE-D-GLPTNLHSLEI 225 (380)
Q Consensus 163 l~~~-----~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~----~~-~-~~~~~L~~L~l 225 (380)
.... +..+ ++|++|++++|......+. .+.. .++|+.|++++|...... .. . ...++|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 3221 2233 6899999999764332222 2344 369999999988533211 11 1 22359999999
Q ss_pred cCCCCcchhhhhhccccCCC-CccceeeeecCCCCCcc-----cccccccccCCCCCCCCcceEecccCCCccch-----
Q 035836 226 DGNMEIWKSTIEWGRGFHRF-SSLRRLAISGCDDDMVS-----FPLEDKRLGTALPLPASLTSLWIEDFPNLERL----- 294 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l----- 294 (380)
++|...........+.+..+ ++|+.|++++ +.+.. ++.... ...++|++|++++ +.+...
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l 245 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENL 245 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHH
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHH
Confidence 99865433322221124455 4999999998 34544 333221 1246899999998 466543
Q ss_pred hhhhccCCCCceEeeecCCCCcccCC---------CCCcccccEEEecCch
Q 035836 295 SSSIVDLQNLTILQLIDCPKLKYFPE---------KGLPSSLLELWIWDCP 336 (380)
Q Consensus 295 ~~~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~~L~~L~l~~c~ 336 (380)
...+..+++|++|++++|. +..+.. -...++|++|++++++
T Consensus 246 ~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2355778999999999864 222221 1124578889998875
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=8.5e-15 Score=133.77 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=112.5
Q ss_pred EEEecCCCCccccC-CCCCCCCceEeecCCcCcccccccc---ceecCC-CCccccccccceeEeecCCCcccccccCCC
Q 035836 11 LEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIRTLTVEE---GIQSSS-SSRRYTSYLLEELRICSCRSLTCIFSKNEL 85 (380)
Q Consensus 11 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (380)
+.++++..-..++. ....++|++|++++|. +...+... .+..++ . |++|++++|. +....
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~--------L~~L~Ls~N~-l~~~~----- 67 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPAS--------VTSLNLSGNS-LGFKN----- 67 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTT--------CCEEECCSSC-GGGSC-----
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCc--------eeEEECcCCC-CCHHH-----
Confidence 44555433223333 2335568888888887 77666411 344444 5 8888888763 32220
Q ss_pred CccccccccCCCCCCccEEEEecCCChhhhHh----hccCC-CCccEEeecCCCCCCcccc-c----ccC-CCCCcEEEc
Q 035836 86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAE----RLDNN-TSLETIDISNCESLKILPS-G----LHN-LRQLQKIEI 154 (380)
Q Consensus 86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~-~----~~~-l~~L~~L~l 154 (380)
+..+.. .+...+++|++|++++|......+. .+..+ ++|++|++++|. +...+. . +.. .++|++|++
T Consensus 68 ~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 68 SDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp HHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHH-HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEc
Confidence 111111 1112212688888888753222222 34444 788888888754 333322 1 223 357888888
Q ss_pred cccccce-----eccCCCccCC-CCCEEeccCCCCccccc----ccCCCC-CCccEEEeccCCCCCC----CCC-C-CCC
Q 035836 155 WECENLV-----SFTEGGLPCA-KLTRLDIYDCERLEALP----KGLHNL-TSLQELTIGKGVELPS----LEE-D-GLP 217 (380)
Q Consensus 155 ~~~~~l~-----~l~~~~~~~~-~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~----~~~-~-~~~ 217 (380)
++| .+. .++..+..++ +|++|++++|......+ ..+..+ ++|+.|++++|..... ++. . ..+
T Consensus 146 s~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 146 RGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred cCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 774 333 1222222233 67777777764332222 123334 4677777776642211 111 1 113
Q ss_pred CCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
++|++|++++|.............+..+++|+.|++++
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 46666666665432211111001144556666666666
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=4.5e-12 Score=121.65 Aligned_cols=110 Identities=28% Similarity=0.407 Sum_probs=52.3
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|. +..+| ..+++|++|++++| .+..+|. +.. +|++|++++ +.+..+|. .+++|+.|+++
T Consensus 81 ~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN-NQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS-SCCSCCCC---CCTTCCEEECC
T ss_pred CCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC-CcCCCCCC---cCccccEEeCC
Confidence 46666665553 33444 33455556666553 3333444 322 555555555 34444444 33455555555
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN 228 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 228 (380)
+|. ++.+|. .+++|+.|++++|. ++.+|. ..++|+.|++++|
T Consensus 149 ~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 149 NNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTN 190 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS
T ss_pred CCc-cCcCCC---cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCC
Confidence 543 223433 34455555555553 222333 1145555555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.3e-12 Score=126.61 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=52.4
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|+.|++++|. +..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|+++
T Consensus 88 ~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCC-CCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECc
Confidence 35555555542 33332 3444555555555542 222222 2444555555555542 33333 233334455555555
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 229 (380)
+|.... ++. +..+++|+.|+|++|. +..++....+++|+.|+|++|.
T Consensus 162 ~N~l~~-~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DNQISD-IVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred CCcCCC-chh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 443222 222 4445555555555442 2223333444455555555443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.9e-12 Score=124.19 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=136.8
Q ss_pred cCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccE
Q 035836 120 DNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQE 199 (380)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 199 (380)
..+++|+.|++++ +.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 4578899999998 4566665 5788999999999984 6676665 6778999999999874 44554 6888999999
Q ss_pred EEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836 200 LTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279 (380)
Q Consensus 200 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (380)
|++++|. +..++....+++|+.|+|++|.... ... +..+++|+.|++++ +.+..++. . ..+++
T Consensus 114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-----l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~ 176 (605)
T 1m9s_A 114 LSLEHNG-ISDINGLVHLPQLESLYLGNNKITD-ITV-----LSRLTKLDTLSLED--NQISDIVP-L-------AGLTK 176 (605)
T ss_dssp EECTTSC-CCCCGGGGGCTTCSEEECCSSCCCC-CGG-----GGSCTTCSEEECCS--SCCCCCGG-G-------TTCTT
T ss_pred EEecCCC-CCCCccccCCCccCEEECCCCccCC-chh-----hcccCCCCEEECcC--CcCCCchh-h-------ccCCC
Confidence 9999985 3445666778999999999986443 322 77899999999998 35555544 3 47899
Q ss_pred cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836 280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
|+.|++++ +.+..++ .+..+++|+.|++++| .+...|.
T Consensus 177 L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 177 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 99999999 5788776 6888999999999985 4555443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=9.3e-12 Score=119.44 Aligned_cols=141 Identities=22% Similarity=0.254 Sum_probs=71.4
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY 179 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 179 (380)
+|++|++++|. +..+|. +.. +|++|++++| .+..+|. .+++|+.|++++ +.+..+|. .+++|+.|+++
T Consensus 101 ~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 101 SLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp TCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECC
T ss_pred CCCEEEccCCC-CCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECC
Confidence 46666666653 333444 332 6666666653 3334554 355666666665 34444444 23466666666
Q ss_pred CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCc-------eEEEecCCCCcchhhhhhccccCCCCccceee
Q 035836 180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNL-------HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA 252 (380)
Q Consensus 180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 252 (380)
+|. ++.+|. +. ++|+.|++++|. ++.+|. ...+| +.|++++|... .++.. +..+++|+.|+
T Consensus 169 ~N~-L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~----l~~l~~L~~L~ 236 (571)
T 3cvr_A 169 NNQ-LTFLPE-LP--ESLEALDVSTNL-LESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPEN----ILSLDPTCTII 236 (571)
T ss_dssp SSC-CSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC--------CCEEEECCSSCCC-CCCGG----GGGSCTTEEEE
T ss_pred CCC-CCCcch-hh--CCCCEEECcCCC-CCchhh--HHHhhhcccccceEEecCCCcce-ecCHH----HhcCCCCCEEE
Confidence 643 333544 33 566666666653 334443 22255 67777666433 22221 33466777777
Q ss_pred eecCCCCCccccc
Q 035836 253 ISGCDDDMVSFPL 265 (380)
Q Consensus 253 l~~~~~~l~~~~~ 265 (380)
+++ |.....++.
T Consensus 237 L~~-N~l~~~~p~ 248 (571)
T 3cvr_A 237 LED-NPLSSRIRE 248 (571)
T ss_dssp CCS-SSCCHHHHH
T ss_pred eeC-CcCCCcCHH
Confidence 776 333333443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.6e-12 Score=113.11 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=59.6
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD 180 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 180 (380)
+..++++++. +..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++ +.+..++. +..+++|+.|++++
T Consensus 21 l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCC
Confidence 5555555542 33333 3445666777777663 444555 455666666666666 34555544 44555666666665
Q ss_pred CCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836 181 CERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 229 (380)
|. ++.++.. .. ++|+.|++++|. ++.++....+++|+.|++++|.
T Consensus 95 N~-l~~l~~~-~~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 95 NR-LKNLNGI-PS-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp SC-CSCCTTC-CC-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSC
T ss_pred Cc-cCCcCcc-cc-CcccEEEccCCc-cCCChhhcCcccccEEECCCCc
Confidence 42 2333321 11 455555555542 2223333344444444444443
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.8e-11 Score=102.47 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=90.9
Q ss_pred CCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCCCE
Q 035836 99 PSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTR 175 (380)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~ 175 (380)
.+|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++.. +..+++|+.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCE
Confidence 368889988885 44443 34678888888888884 45555543 56788888888887 456666654 355778888
Q ss_pred EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836 176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI 253 (380)
Q Consensus 176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 253 (380)
|++++|......+..+..+++|+.|++++|.. +.++. ...+++|+.|++++|.. ...+++|+.|++
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~L~~ 172 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSE 172 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCB-----------CCCTTTTHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCe-----------ecCCCCHHHHHH
Confidence 88887644333333466777888888877743 33322 24456667777666631 234455666665
Q ss_pred ec
Q 035836 254 SG 255 (380)
Q Consensus 254 ~~ 255 (380)
+.
T Consensus 173 ~~ 174 (208)
T 2o6s_A 173 WI 174 (208)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=4.9e-11 Score=101.37 Aligned_cols=125 Identities=21% Similarity=0.208 Sum_probs=55.9
Q ss_pred CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
+|+.|++++|......+..+..+++|+.|++++|.. ..++. ...+++|+.|++++|.. +.+.... +..+++|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~---~~~l~~L~ 115 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TVLPSAV---FDRLVHLK 115 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT---TTTCTTCC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcC-CccChhH---hCcchhhC
Confidence 455555554433333334444555555555555432 22221 12334444444444322 1111111 34455555
Q ss_pred eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836 250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID 311 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 311 (380)
.|++++ +.+..++... ..+++|++|++++ +.++.++. .+..+++|++|++.+
T Consensus 116 ~L~Ls~--N~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 116 ELFMCC--NKLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EEECCS--SCCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEeccC--CcccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 555554 3444444333 2445555555555 34554443 445555555555555
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=1.8e-11 Score=102.46 Aligned_cols=170 Identities=19% Similarity=0.261 Sum_probs=116.7
Q ss_pred cEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCcc
Q 035836 9 EILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88 (380)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (380)
+.+++.+. .+..+|. ..+++|++|+++++. +..++.. .+..++. |++|+++++. ++.+ +..
T Consensus 10 ~~v~c~~~-~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~-~~~~l~~--------L~~L~l~~n~-l~~~------~~~ 70 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPT-GIPAQTTYLDLETNS-LKSLPNG-VFDELTS--------LTQLYLGGNK-LQSL------PNG 70 (208)
T ss_dssp TEEECCSS-CCSSCCS-CCCTTCSEEECCSSC-CCCCCTT-TTTTCTT--------CSEEECCSSC-CCCC------CTT
T ss_pred CEEEecCC-CccCCCC-CCCCCCcEEEcCCCc-cCcCChh-hhccccc--------CcEEECCCCc-cCcc------Chh
Confidence 34555543 4455553 346789999999987 7777765 5667777 9999998863 3333 110
Q ss_pred ccccccCCCCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC
Q 035836 89 LESLEVGNLPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG 166 (380)
Q Consensus 89 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~ 166 (380)
.+..++ +|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++..
T Consensus 71 ----~~~~l~-~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~ 142 (208)
T 2o6s_A 71 ----VFNKLT-SLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDG 142 (208)
T ss_dssp ----TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT
T ss_pred ----hcCCCC-CcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHH
Confidence 234566 69999999885 44444 44678999999999985 55555544 67789999999988 466777665
Q ss_pred -CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC
Q 035836 167 -GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE 212 (380)
Q Consensus 167 -~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 212 (380)
+..+++|+.|++++|... ..+++|+.|.++.+.....+|
T Consensus 143 ~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred HhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence 456889999999987432 345677777777665444444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=8.7e-12 Score=108.38 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=131.0
Q ss_pred CCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEE
Q 035836 122 NTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELT 201 (380)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 201 (380)
+.++..+++++ +.+..++ .+..+++|+.|+++++ .+..++ .+..+++|+.|++++|. +..++. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcC-CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 44566677776 4555555 4667899999999984 677776 66778999999999864 555555 88899999999
Q ss_pred eccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcc
Q 035836 202 IGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLT 281 (380)
Q Consensus 202 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~ 281 (380)
+++|. ++.++.... ++|+.|++++|.... ... +..+++|+.|++++ +.+..++. . ..+++|+
T Consensus 92 L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~-~~~-----l~~l~~L~~L~Ls~--N~i~~~~~-l-------~~l~~L~ 153 (263)
T 1xeu_A 92 VNRNR-LKNLNGIPS-ACLSRLFLDNNELRD-TDS-----LIHLKNLEILSIRN--NKLKSIVM-L-------GFLSKLE 153 (263)
T ss_dssp CCSSC-CSCCTTCCC-SSCCEEECCSSCCSB-SGG-----GTTCTTCCEEECTT--SCCCBCGG-G-------GGCTTCC
T ss_pred CCCCc-cCCcCcccc-CcccEEEccCCccCC-Chh-----hcCcccccEEECCC--CcCCCChH-H-------ccCCCCC
Confidence 99984 444554444 899999999986443 332 77899999999998 56766653 2 4788999
Q ss_pred eEecccCCCccchhhhhccCCCCceEeeecCCCCcccC
Q 035836 282 SLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP 319 (380)
Q Consensus 282 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 319 (380)
+|++++ +.+..+ ..+..+++|+.|++++ +.+...+
T Consensus 154 ~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 154 VLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp EEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred EEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence 999999 577777 5788899999999998 4455544
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1.2e-10 Score=98.27 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=39.7
Q ss_pred EEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccC
Q 035836 127 TIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 205 (380)
.++.++ +.+..+|..+. ++++.|++++ +.+..++. .+..+++|+.|++++|......|..+.++++|+.|++++|
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 344444 34445554432 4566666665 34444444 3344556666666665444334555666666666666665
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=9.3e-11 Score=99.01 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=92.9
Q ss_pred CCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC-ccCCCCCE
Q 035836 98 PPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTR 175 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~ 175 (380)
|.+|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++ +.+..++... ..+++|+.
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCE
Confidence 3479999999885 44444 4678889999999998544433466678889999999988 5677777654 45788899
Q ss_pred EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCC
Q 035836 176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNME 230 (380)
Q Consensus 176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 230 (380)
|++++|......+..+..+++|+.|++++|......+. ...+++|+.|++++|..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99888765555566778888888888888754332222 34566677777776653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=8e-11 Score=107.28 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=87.4
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-cc-CCCCCcEEEccccccceeccC-CCccCCCCCEEe
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LH-NLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLD 177 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 177 (380)
-+.++.+++ .+..+|..+ .+.++.|++++| .+..++.. +. .+++|+.|++++ +.+..++. .+..+++|+.|+
T Consensus 20 ~~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQ-QLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSS-CCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCC-CcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEE
Confidence 456666665 355666544 245777888774 45544433 43 677788888877 45666654 355677777887
Q ss_pred ccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecC
Q 035836 178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGC 256 (380)
Q Consensus 178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 256 (380)
+++|......+..+..+++|+.|++++|......+ ....+++|+.|+|++|.... ++......+..+++|+.|++++
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~- 172 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSS- 172 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCS-
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCC-
Confidence 77765333333456677777777777764332222 23455666666666654332 2221100013456666666665
Q ss_pred CCCCcccc
Q 035836 257 DDDMVSFP 264 (380)
Q Consensus 257 ~~~l~~~~ 264 (380)
+.+..++
T Consensus 173 -N~l~~l~ 179 (361)
T 2xot_A 173 -NKLKKLP 179 (361)
T ss_dssp -SCCCCCC
T ss_pred -CCCCccC
Confidence 3444444
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=1.1e-10 Score=98.61 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=71.2
Q ss_pred CCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceec-cCCCccCC
Q 035836 95 GNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSF-TEGGLPCA 171 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~ 171 (380)
..++ +|++|++++|. +..+ +..+..+++|++|++++|. +..++ ..+..+++|++|++++ +.+..+ +..+..++
T Consensus 54 ~~l~-~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 54 KKLP-QLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLS 129 (220)
T ss_dssp GGCT-TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCT
T ss_pred ccCC-CCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCc
Confidence 3455 57777777764 4333 3366777777888877743 34444 3466777888888877 455555 34555677
Q ss_pred CCCEEeccCCCCcccccccCCCCCCccEEEeccCC
Q 035836 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGV 206 (380)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 206 (380)
+|+.|++++|......|..+..+++|+.|++++|.
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88888888765555556677778888888888764
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=1.2e-10 Score=99.04 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=60.5
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCCC-ccCCCCCEEe
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLD 177 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 177 (380)
+|++|++++|......+..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++... ..+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeEe
Confidence 4555555554322222344455555555555552 23333322 34455555555555 3444444332 3355555555
Q ss_pred ccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836 178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 229 (380)
+++|. +..+|..+..+++|+.|++++|.. +.++. ...+++|+.|++.+|.
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence 55532 334555555555566666655532 22221 2345566666666654
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=8.6e-12 Score=112.21 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=120.0
Q ss_pred CCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccc---cceeccC-CCccC
Q 035836 97 LPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECE---NLVSFTE-GGLPC 170 (380)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~---~l~~l~~-~~~~~ 170 (380)
++ +|+++.+.. .+..++ ..|..|++|+.+++.+ +.+..++.. +..+.++..+...... ....+.. .+..|
T Consensus 100 ~~-~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQ-TLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CT-TCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cC-CCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 55 588888877 355443 4677888999999887 444445433 4455556555544311 1111111 22345
Q ss_pred CCCC-EEeccCCCCcccc-cccCCCCCCccEEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836 171 AKLT-RLDIYDCERLEAL-PKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 247 (380)
Q Consensus 171 ~~L~-~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (380)
..|+ .+.+.....+... ...-....+++.+.+.+.-....+... ..+++|+.+++.+|. ++.++... |.++++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a---F~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT---FAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT---TTTCTT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh---hhCCCC
Confidence 5665 4444432221111 011112345555655543111111000 125677778777654 33333222 777888
Q ss_pred cceeeeecCCCCCcccccccccccCCCCCCCCcc-eEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC--
Q 035836 248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLT-SLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL-- 323 (380)
Q Consensus 248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~-- 323 (380)
|+.+++.+ .++.++... +..+++|+ .+.+.+ .++.++. .|.+|++|+.|++.+ +.++.++...+
T Consensus 252 L~~l~l~~---ni~~I~~~a------F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 252 LLKIKLPH---NLKTIGQRV------FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGN 319 (329)
T ss_dssp CCEEECCT---TCCEECTTT------TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCT
T ss_pred CCEEECCc---ccceehHHH------hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcC
Confidence 88888876 266665533 46777788 888876 6666665 788888888888876 67777777655
Q ss_pred cccccEEE
Q 035836 324 PSSLLELW 331 (380)
Q Consensus 324 ~~~L~~L~ 331 (380)
.++|+.|+
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 34666654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=4.4e-11 Score=108.97 Aligned_cols=102 Identities=23% Similarity=0.342 Sum_probs=50.4
Q ss_pred CccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceecc-CCCccCCCCCEE
Q 035836 100 SLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFT-EGGLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L 176 (380)
+|++|++++|. +..+ +..+..+++|++|++++| .+..++. .+..+++|+.|++++ +.+..++ ..+..+++|+.|
T Consensus 65 ~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 65 NLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEE
T ss_pred ccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEE
Confidence 46666665553 3322 234555666666666653 3333332 344556666666655 3344432 234445566666
Q ss_pred eccCCCCccccccc-C---CCCCCccEEEeccC
Q 035836 177 DIYDCERLEALPKG-L---HNLTSLQELTIGKG 205 (380)
Q Consensus 177 ~l~~~~~~~~~~~~-l---~~~~~L~~L~l~~~ 205 (380)
++++|. +..+|.. + ..+++|+.|++++|
T Consensus 142 ~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ECCSSC-CCSCCGGGTC----CTTCCEEECCSS
T ss_pred ECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC
Confidence 666542 3333322 2 34566666666665
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=2.2e-10 Score=96.63 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=94.7
Q ss_pred CCCccEEEEecCCChhhh-H-hhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCC
Q 035836 98 PPSLRSLYVSHCSKLESI-A-ERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKL 173 (380)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L 173 (380)
+..+++|++++|. +..+ + ..+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++.. +..+++|
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESL 107 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSSC
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcCC
Confidence 3357888888875 4444 2 34678889999999884 4555543 577888999999988 466666654 5567889
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCc
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEI 231 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 231 (380)
++|++++|......|..+..+++|+.|++++|......+ ....+++|+.|++++|...
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999998876655556778888899999998885444333 3456788999999888644
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.9e-13 Score=130.33 Aligned_cols=192 Identities=16% Similarity=0.123 Sum_probs=110.2
Q ss_pred CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCC-------------CCCcccccccCCCCCcEEE-ccccccc
Q 035836 95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE-------------SLKILPSGLHNLRQLQKIE-IWECENL 160 (380)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~l 160 (380)
...+ +|+.|++++| .++.+|..++++++|+.|+++++. .....|..+..+++|+.|+ +.. +.+
T Consensus 346 ~~~~-~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~ 422 (567)
T 1dce_A 346 ATDE-QLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYL 422 (567)
T ss_dssp STTT-TSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHH
T ss_pred ccCc-cceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-ccc
Confidence 3455 6999999987 478899999999999999987643 2233344455566666666 322 222
Q ss_pred eeccCC------C--ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcc
Q 035836 161 VSFTEG------G--LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIW 232 (380)
Q Consensus 161 ~~l~~~------~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 232 (380)
..++.. + .+...|+.|++++| .++.+|. +..+++|+.|+++ +|...
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls-----------------------~N~l~- 476 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLS-----------------------HNRLR- 476 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECC-----------------------SSCCC-
T ss_pred chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecC-----------------------ccccc-
Confidence 211110 0 00123555555543 2333443 4444445555444 44322
Q ss_pred hhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch--hhhhccCCCCceEeee
Q 035836 233 KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL--SSSIVDLQNLTILQLI 310 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~ 310 (380)
.++. . +..+++|+.|++++ +.+..++ .. ..+++|++|++++ +.++.+ |..+..+++|+.|+++
T Consensus 477 ~lp~--~--~~~l~~L~~L~Ls~--N~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 477 ALPP--A--LAALRCLEVLQASD--NALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCG--G--GGGCTTCCEEECCS--SCCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECT
T ss_pred ccch--h--hhcCCCCCEEECCC--CCCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEec
Confidence 1111 1 55667777777776 4555555 33 4667777777777 466666 5677777778888887
Q ss_pred cCCCCcccCCCC-----CcccccEEE
Q 035836 311 DCPKLKYFPEKG-----LPSSLLELW 331 (380)
Q Consensus 311 ~c~~l~~~~~~~-----~~~~L~~L~ 331 (380)
+ +.++.++... ..++|+.|+
T Consensus 542 ~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 G-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp T-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-CcCCCCccHHHHHHHHCcccCccC
Confidence 7 4566655421 135666664
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.2e-10 Score=104.66 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=75.1
Q ss_pred CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCc-eEeeecCCCCcccCCC
Q 035836 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLT-ILQLIDCPKLKYFPEK 321 (380)
Q Consensus 244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~ 321 (380)
.+++|+.+++.+ +.++.++... +..+++|+.+++.+ +++.++. .|.+|++|+ .+.+.+ .++.++..
T Consensus 224 ~~~~L~~l~L~~--n~i~~I~~~a------F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISK--TNATTIPDFT------FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp HCTTCCEEECTT--BCCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred hcCCCeEEECCC--CCcceecHhh------hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence 378999999997 4677887643 47889999999987 4888877 899999999 999986 78889887
Q ss_pred CC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeE
Q 035836 322 GL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVS 360 (380)
Q Consensus 322 ~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (380)
.+ .++|+.+++.++. +...+...|...+.+..++
T Consensus 292 aF~~c~~L~~l~l~~n~-----i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDK-----ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSC-----CCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCc-----cCccchhhhcCCcchhhhc
Confidence 76 5689999986522 2223444555555555544
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=1.7e-10 Score=92.95 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 171 AKLTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 171 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
++|++|++++|... ..+|..+..+++|+.|++++|. ++.+.....+++|+.|++++|......+. . +..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~---~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDM-L---AEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCH-H---HHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHH-H---HhhCCCCC
Confidence 35555555554322 2445445555666666666654 22223444556666666666654332221 1 44578888
Q ss_pred eeeeecCCCCCcccc--cccccccCCCCCCCCcceEecccCCCccchhh----hhccCCCCceEeeecCCCCcccCC
Q 035836 250 RLAISGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILQLIDCPKLKYFPE 320 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~~~ 320 (380)
.|++++ +.+..++ ... ..+++|++|++++ +.+..++. .+..+++|++|++++| .++.+|.
T Consensus 99 ~L~Ls~--N~l~~~~~~~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSG--NKLKDISTLEPL-------KKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EEECBS--SSCCSSGGGGGG-------SSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EEeccC--CccCcchhHHHH-------hcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 888887 3555554 223 4678888888888 46666664 6788899999999885 4555554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=1.4e-10 Score=93.45 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCccEEeecCCCCC-CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEE
Q 035836 123 TSLETIDISNCESL-KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELT 201 (380)
Q Consensus 123 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 201 (380)
++|++|++++|... ..+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44444444443221 133433344444444444442 23333 3333344444444444433222333333344555555
Q ss_pred eccCCCCCCC---CCCCCCCCceEEEecCCCCcchhh-hhhccccCCCCccceeeeec
Q 035836 202 IGKGVELPSL---EEDGLPTNLHSLEIDGNMEIWKST-IEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 202 l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~ 255 (380)
+++|.. +.+ .....+++|+.|++++|....... .... +..+++|+.|++++
T Consensus 102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--FKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH--HTTCSSCCEETTEE
T ss_pred ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH--HHhCccCcEecCCC
Confidence 554422 211 112334444444444443221111 0001 45566666666665
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=7.7e-09 Score=95.20 Aligned_cols=210 Identities=12% Similarity=0.132 Sum_probs=126.6
Q ss_pred CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836 100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD 177 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 177 (380)
+|+.+.+.. .+..+. ..|..|++|+.+++.. +.+..++.....+.+|+.+.+.. .+..+... +..|++|+.+.
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 477777764 244333 3566777777777776 45666665555567777777753 35665553 34567777777
Q ss_pred ccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCc----chhhhhhccccCCCCccce
Q 035836 178 IYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEI----WKSTIEWGRGFHRFSSLRR 250 (380)
Q Consensus 178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~L~~ 250 (380)
+..+ ++.++ .+|.+ .+|+.+.+... ++.++ ....+++|+.+.+.++... ..+... . |.+|++|+.
T Consensus 233 l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-a--F~~c~~L~~ 304 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-C--LEGCPKLAR 304 (401)
T ss_dssp CCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-T--TTTCTTCCE
T ss_pred cCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH-H--hhCCccCCe
Confidence 7652 44444 24444 57777777542 33332 3356777888777665432 111111 1 777788888
Q ss_pred eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---ccc
Q 035836 251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSS 326 (380)
Q Consensus 251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~ 326 (380)
+.+.. .++.+.... +..+++|+.+.+.. +++.+.. .|.++ +|+.+.+.+ +.+..++...+ +..
T Consensus 305 l~l~~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 305 FEIPE---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDD 371 (401)
T ss_dssp ECCCT---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTT
T ss_pred EEeCC---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCC
Confidence 87764 355555432 45667788888754 4666655 67777 888888877 45555555433 346
Q ss_pred ccEEEecCc
Q 035836 327 LLELWIWDC 335 (380)
Q Consensus 327 L~~L~l~~c 335 (380)
+..|.+-..
T Consensus 372 l~~l~vp~~ 380 (401)
T 4fdw_A 372 ITVIRVPAE 380 (401)
T ss_dssp CCEEEECGG
T ss_pred ccEEEeCHH
Confidence 777777653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=3.6e-10 Score=89.12 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCCCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836 171 AKLTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 249 (380)
Q Consensus 171 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 249 (380)
++++.|++++|... ..+|..+..+++|+.|++++|.. +.+.....+++|+.|++++|......+. . +..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~---~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNRVSGGLEV-L---AEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCCTTCCCCTTCCEEECCSSCCCSCTHH-H---HHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCchhhhcCCCCCEEECCCCcccchHHH-H---hhhCCCCC
Confidence 35666666655432 25555555666666666666532 2223344555666666666553332221 1 33466777
Q ss_pred eeeeecCCCCCcccc--cccccccCCCCCCCCcceEecccCCCccchhh----hhccCCCCceEeee
Q 035836 250 RLAISGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILQLI 310 (380)
Q Consensus 250 ~L~l~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~ 310 (380)
.|++++ +.+..++ ... ..+++|++|++++ +.++.++. .+..+++|++|+++
T Consensus 92 ~L~ls~--N~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSG--NKIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTT--SCCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCC--CcCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 777776 3344433 222 3566777777776 35555543 56667777777664
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=7.2e-09 Score=95.39 Aligned_cols=256 Identities=12% Similarity=0.125 Sum_probs=167.7
Q ss_pred CCccEEEEecCCCCccccCCCC-CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCC
Q 035836 6 SSLEILEIWVCHSLTYIAGVQL-PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE 84 (380)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (380)
..++.+.+-+ .++.++..+. -.+|+.+.+... ++.++.. .|.++ . |+++.+.. .++.+
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~-aF~~~-~--------L~~i~lp~--~l~~I----- 171 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDM-AFFNS-T--------VQEIVFPS--TLEQL----- 171 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTCCCSEEECCTT--CCEECTT-TTTTC-C--------CCEEECCT--TCCEE-----
T ss_pred CCccEEEECC--ccCEehHhhcccCCccEEEeCCC--ccEECHH-hcCCC-C--------ceEEEeCC--CccEe-----
Confidence 4455555543 4555554221 236888887543 6777765 44443 4 88888864 44443
Q ss_pred CCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceec
Q 035836 85 LPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSF 163 (380)
Q Consensus 85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l 163 (380)
+.-.+..++ +|+.+++..+. +..++...-.+.+|+.+.+.. .+..++.. +.++++|+.+.+.. .+..+
T Consensus 172 -----~~~aF~~c~-~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I 240 (401)
T 4fdw_A 172 -----KEDIFYYCY-NLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTI 240 (401)
T ss_dssp -----CSSTTTTCT-TCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEE
T ss_pred -----hHHHhhCcc-cCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCc
Confidence 111345556 69999998763 665655444468999999974 36666544 56789999999975 46777
Q ss_pred cCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCC----CCCC--CCCCCCCceEEEecCCCCcchhhh
Q 035836 164 TEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVEL----PSLE--EDGLPTNLHSLEIDGNMEIWKSTI 236 (380)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~----~~~~--~~~~~~~L~~L~l~~~~~~~~~~~ 236 (380)
....+...+|+.+.+.. .++.++ .+|.++++|+.+.+.++... ..++ ....+++|+.+.+.+. +..+..
T Consensus 241 ~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~ 316 (401)
T 4fdw_A 241 GQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ 316 (401)
T ss_dssp CTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred cccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh
Confidence 77655557899999864 355554 57889999999999875432 1122 3467889999998853 444433
Q ss_pred hhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCC-CCceEeeec
Q 035836 237 EWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ-NLTILQLID 311 (380)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~-~L~~L~l~~ 311 (380)
.. |.+|++|+.+.+.. .+..+.... +..+ +|+.+++.+ +.+..++. .+.+++ +++.|.+-.
T Consensus 317 ~a---F~~c~~L~~l~lp~---~l~~I~~~a------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 317 GL---LGGNRKVTQLTIPA---NVTQINFSA------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TT---TTTCCSCCEEEECT---TCCEECTTS------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hh---hcCCCCccEEEECc---cccEEcHHh------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 22 88899999999965 366665432 4567 899999988 45555554 666664 677777754
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=2.7e-10 Score=89.78 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=44.3
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc--ccccCCCCCcEEEccccccceeccC----CC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP--SGLHNLRQLQKIEIWECENLVSFTE----GG 167 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~~ 167 (380)
+..++ +|++|++++|.....+|..+..+++|++|++++| .+..++ ..+..+++|++|+++++ .+..++. .+
T Consensus 60 ~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 136 (149)
T 2je0_A 60 LPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVF 136 (149)
T ss_dssp CCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHH
T ss_pred hhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHH
Confidence 34444 4666666666432235555555666666666663 333332 44555666666666663 4444443 23
Q ss_pred ccCCCCCEEecc
Q 035836 168 LPCAKLTRLDIY 179 (380)
Q Consensus 168 ~~~~~L~~L~l~ 179 (380)
..+++|+.|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (149)
T 2je0_A 137 KLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEETTB
T ss_pred HHCCCcccccCC
Confidence 345556665543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=2.4e-09 Score=88.20 Aligned_cols=104 Identities=17% Similarity=0.303 Sum_probs=64.0
Q ss_pred CccEEEEecCCChhhhHh--hccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836 100 SLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 176 (380)
++++|++++|. +..++. .+..+++|++|++++|......|..+..+++|++|++++ +.+..++.. +..+++|++|
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEE
Confidence 57777777764 444443 266777777777777443333355566677777777776 455555443 4456667777
Q ss_pred eccCCCCcccccccCCCCCCccEEEeccC
Q 035836 177 DIYDCERLEALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 205 (380)
++++|......|..+..+++|+.|++++|
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 77766554444555666666666666655
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=4.5e-08 Score=90.10 Aligned_cols=289 Identities=15% Similarity=0.121 Sum_probs=146.9
Q ss_pred CCCCCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836 2 CDTNSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI 79 (380)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (380)
|.++.+|+.+.|.. .++.+.. +..|++|+.+++.. +++.++.. .|.++.. |+.+.+.. .+..+
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~-aF~~c~~--------L~~i~~p~--~l~~i 131 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRC-TFSGCYA--------LKSILLPL--MLKSI 131 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-TTTTCTT--------CCCCCCCT--TCCEE
T ss_pred hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccch-hhccccc--------chhhcccC--ceeee
Confidence 45667777777753 4666655 33467777777753 25555555 5555655 65555432 11111
Q ss_pred ccc----C-----CCC---ccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccC
Q 035836 80 FSK----N-----ELP---ATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHN 145 (380)
Q Consensus 80 ~~~----~-----~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~ 145 (380)
... . .++ ..+....+.... +|+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+.. .+.+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~-~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~ 206 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCE-SLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE 206 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCT-TCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred cceeeecccccccccCccccccchhhhcccC-CCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence 000 0 000 000110122222 3555554432 1111 123444455555544431 222221 1333
Q ss_pred CCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEE
Q 035836 146 LRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLE 224 (380)
Q Consensus 146 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 224 (380)
+..|+.+.+.. ....+......+.+|+.+.+... ...+. ..+..+..++.+.+..+...-.......+..++.+.
T Consensus 207 ~~~L~~i~~~~--~~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 207 CILLENMEFPN--SLYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CTTCCBCCCCT--TCCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred ccccceeecCC--CceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence 44444444432 12222233333445666655431 22222 345566677777766432211112234556666666
Q ss_pred ecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCC
Q 035836 225 IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQN 303 (380)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~ 303 (380)
..... + . ... +..+.+|+.+.+.. .++.+.... +..+.+|+.+.+.. .++.+.. .|.+|.+
T Consensus 283 ~~~~~-i---~-~~~--F~~~~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 283 YGSVI-V---P-EKT--FYGCSSLTEVKLLD---SVKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp ECSSE-E---C-TTT--TTTCTTCCEEEECT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred cCcee-e---c-ccc--cccccccccccccc---ccceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 54431 1 1 111 66778888888864 355555432 45778899888864 5677765 7888999
Q ss_pred CceEeeecCCCCcccCCCCC--cccccEEEecC
Q 035836 304 LTILQLIDCPKLKYFPEKGL--PSSLLELWIWD 334 (380)
Q Consensus 304 L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~ 334 (380)
|+.+.+.. .++.++..++ ..+|+.+++..
T Consensus 345 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 99998864 3788877666 46888888864
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=7e-09 Score=85.47 Aligned_cols=102 Identities=22% Similarity=0.311 Sum_probs=54.1
Q ss_pred CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccC-CCccCCCCCEEe
Q 035836 100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLD 177 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 177 (380)
+|++|++++|. +..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++. .+..+++|+.|+
T Consensus 32 ~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEE
Confidence 57777777663 4556666666677777777663 333333 3355566666666666 34444443 233455555555
Q ss_pred ccCCCCccccc-ccCCCCCCccEEEeccC
Q 035836 178 IYDCERLEALP-KGLHNLTSLQELTIGKG 205 (380)
Q Consensus 178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 205 (380)
+++|... .++ ..+..+++|+.|++++|
T Consensus 109 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 109 LHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 5554322 222 23444444444444443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=8.2e-10 Score=89.69 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836 26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY 105 (380)
Q Consensus 26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 105 (380)
..+++|++|+++++. +..++. .....+. |+.|+++++. ++.+ + .+..++ +|++|+
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~--~~~~~~~--------L~~L~Ls~N~-l~~~----------~--~l~~l~-~L~~L~ 70 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIEN--LGATLDQ--------FDAIDFSDNE-IRKL----------D--GFPLLR-RLKTLL 70 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCC--GGGGTTC--------CSEEECCSSC-CCEE----------C--CCCCCS-SCCEEE
T ss_pred CCcCCceEEEeeCCC-CchhHH--hhhcCCC--------CCEEECCCCC-CCcc----------c--ccccCC-CCCEEE
Confidence 345667777777665 554431 1122224 6666666653 2222 0 344455 467777
Q ss_pred EecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccc--cccCCCCCcEEEccccccceeccCC----CccCCCCCEEec
Q 035836 106 VSHCSKLESIAER-LDNNTSLETIDISNCESLKILPS--GLHNLRQLQKIEIWECENLVSFTEG----GLPCAKLTRLDI 178 (380)
Q Consensus 106 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~L~~L~l 178 (380)
+++|. +..+|.. +..+++|++|++++| .+..+|. .+..+++|+.|+++++ .+..++.. +..+++|+.|++
T Consensus 71 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 71 VNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred CCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 76664 4444432 356666777777663 4455554 4556666666666663 44444442 344566666666
Q ss_pred cCCC
Q 035836 179 YDCE 182 (380)
Q Consensus 179 ~~~~ 182 (380)
++|.
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 5543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=7.4e-09 Score=85.28 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=77.7
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc--ccCCCCCcEEEccccccceec-cCCCccCCCCCEEe
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG--LHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLD 177 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 177 (380)
-++++++++. ++.+|..+. .+|++|++++| .+..++.. +..+++|++|++++ +.+..+ +..+..+++|++|+
T Consensus 10 ~~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRG-LKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCC-cCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEE
Confidence 3566666653 555665443 37788888874 45555432 66778888888877 455555 44556677788888
Q ss_pred ccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCC
Q 035836 178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNME 230 (380)
Q Consensus 178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 230 (380)
+++|......+..+..+++|+.|++++|......+ ....+++|+.|++++|..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 87765544444556777777777777774433323 224556666666666653
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2.7e-09 Score=86.55 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCcceEecccCCCccchhh--hhccCCCCceEeeec
Q 035836 277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLID 311 (380)
Q Consensus 277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~ 311 (380)
+++|++|++++ +.+..++. .+..+++|++|++++
T Consensus 87 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 87 LPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp CTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred CCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC
Confidence 34444444444 23444443 344444555555544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=2e-09 Score=106.87 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=73.2
Q ss_pred cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
+..++ +|+.|++++|. +..+|..+..+++|++|++++| .+..+|..+.++++|++|++++ +.+..+|..+..+++|
T Consensus 220 ~~~l~-~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQ-LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQL 295 (727)
T ss_dssp --CCC-CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTC
T ss_pred hccCC-CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCC
Confidence 34445 57777777764 4466666667777777777774 4446776677777777777777 4566777767677777
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCC
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVE 207 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 207 (380)
+.|++++| .++.+|..+..+++|+.|+|++|..
T Consensus 296 ~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 77777765 3456676677777777777777643
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=1.2e-08 Score=83.99 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=79.2
Q ss_pred cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccC
Q 035836 102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYD 180 (380)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 180 (380)
+.++++++ .+..+|..+ .++|++|++++ +.+..+|..+..+++|+.|++++ +.+..++. .+..+++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCC--CCCCCEEECCC-CcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC
Confidence 45566554 355565544 35788888887 45567777777788888888887 45666654 355677888888887
Q ss_pred CCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836 181 CERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 229 (380)
|......+..+..+++|+.|++++|.. +.++. ...+++|+.|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCC
Confidence 654444445677777888888887743 33332 2345666666666654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.88 E-value=1.3e-09 Score=108.27 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=58.9
Q ss_pred cccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCC
Q 035836 140 PSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPT 218 (380)
Q Consensus 140 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 218 (380)
+..+..+++|+.|++++ +.+..++..+..+++|+.|++++|. ++.+|..+..+++|+.|+|++|... .+|. ...++
T Consensus 217 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 44455666677777766 3455666656666677777777653 3366666666667777777766432 3332 23445
Q ss_pred CceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836 219 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255 (380)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (380)
+|+.|+|++|.. ..++. . +..+++|+.|++++
T Consensus 294 ~L~~L~L~~N~l-~~lp~--~--~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNMV-TTLPW--E--FGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSCC-CCCCS--S--TTSCTTCCCEECTT
T ss_pred CCCEEECCCCCC-CccCh--h--hhcCCCccEEeCCC
Confidence 555555555532 22211 1 55666777777766
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=4.2e-09 Score=101.41 Aligned_cols=208 Identities=17% Similarity=0.150 Sum_probs=130.6
Q ss_pred CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc---cccCCCCccccccccCCCCCCcc
Q 035836 26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI---FSKNELPATLESLEVGNLPPSLR 102 (380)
Q Consensus 26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~L~ 102 (380)
..+++|+.|+++++. ++.+|.+ +..+.. |+.|+++++..+... .......+..+. .+..++ +|+
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~--i~~l~~--------L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~-~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSE--LESCKE--------LQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFS-TLK 412 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHH--HHHHHH--------HHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHH-HHH
T ss_pred ccCccceeccCChhh-HHhhHHH--HHHHHH--------HHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHH-hcc
Confidence 446778888888876 7777765 566666 888887543211000 000000111111 123344 477
Q ss_pred EEE-EecCCChhhhHh------hcc--CCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836 103 SLY-VSHCSKLESIAE------RLD--NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173 (380)
Q Consensus 103 ~L~-l~~~~~~~~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L 173 (380)
.|+ ++.+ .+..++. .+. ....|++|++++ +.+..+|. +..+++|+.|++++ +.+..+|..+..+++|
T Consensus 413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L 488 (567)
T 1dce_A 413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCL 488 (567)
T ss_dssp HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTC
T ss_pred cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecC-CCCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCC
Confidence 776 3332 1221111 010 113689999998 46666776 88899999999998 5777888888889999
Q ss_pred CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCC-C-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836 174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSL-E-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL 251 (380)
Q Consensus 174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 251 (380)
+.|++++|. ++.+| .+..+++|+.|++++|...... | ....+++|+.|++++|......+ .....+..+++|+.|
T Consensus 489 ~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 489 EVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEE
T ss_pred CEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCcc
Confidence 999999864 44577 7888999999999998554432 3 34678999999999987443322 111013347888888
Q ss_pred ee
Q 035836 252 AI 253 (380)
Q Consensus 252 ~l 253 (380)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=3.1e-08 Score=80.29 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=36.0
Q ss_pred CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836 100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 176 (380)
+|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++.. +..+++|+.|
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence 46666666553 33332 23455555666665553 33333322 34455555555554 233333332 2233444444
Q ss_pred eccCC
Q 035836 177 DIYDC 181 (380)
Q Consensus 177 ~l~~~ 181 (380)
++++|
T Consensus 106 ~l~~N 110 (177)
T 2o6r_A 106 ALDTN 110 (177)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 44443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=4.7e-08 Score=79.22 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=70.9
Q ss_pred ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEec
Q 035836 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDI 178 (380)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 178 (380)
.+.++++++. +..+|..+ .++|++|++++|. +..++. .+..+++|++|++++ +.+..++.. +..+++|+.|++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEEC
Confidence 4556665553 44555433 3577888887743 444443 346677788888777 456666554 345677777777
Q ss_pred cCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836 179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 229 (380)
++|......+..+..+++|+.|++++|.. +.++. ...+++|+.|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 77543333333456667777777776633 33332 1335556666665554
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.73 E-value=3.1e-06 Score=77.78 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836 215 GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL 294 (380)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 294 (380)
..+..|+.+.+...... +.. .. |.++++|+.+.+.. .+..++... +..+.+|+.+.+.. .++.+
T Consensus 262 ~~c~~L~~i~lp~~~~~--I~~-~a--F~~c~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I 325 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS--IGT-GA--FMNCPALQDIEFSS---RITELPESV------FAGCISLKSIDIPE--GITQI 325 (394)
T ss_dssp TTCSSCCEEECCTTCCE--ECT-TT--TTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCEEECCT--TCCEE
T ss_pred eecccccEEecccccce--ecC-cc--cccccccccccCCC---cccccCcee------ecCCCCcCEEEeCC--cccEe
Confidence 34566777766543221 111 11 66777888777754 455555432 46778888888864 56666
Q ss_pred hh-hhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836 295 SS-SIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP 336 (380)
Q Consensus 295 ~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 336 (380)
.. .|.+|.+|+++.+- ..++.++..++ .++|+.+++.+..
T Consensus 326 ~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEEEECCce
Confidence 65 78888889988885 35777777655 4688888888754
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=2.2e-06 Score=78.72 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=147.0
Q ss_pred CccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCC
Q 035836 19 LTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGN 96 (380)
Q Consensus 19 ~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~ 96 (380)
++++.. +..|.+|+++.+.. +++.++.. .|.++.. |+++++.. +++.+... .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~-aF~~c~~--------L~~i~lp~--~l~~I~~~----------aF~~ 115 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEF-AFENCSK--------LEIINIPD--SVKMIGRC----------TFSG 115 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTT-TTTTCTT--------CCEECCCT--TCCEECTT----------TTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchh-HhhCCCC--------CcEEEeCC--CceEccch----------hhcc
Confidence 344544 34578999999853 47788776 7888888 99998864 23332000 1222
Q ss_pred CCCCccEEEEecC--------------------CChhh-hHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEc
Q 035836 97 LPPSLRSLYVSHC--------------------SKLES-IAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEI 154 (380)
Q Consensus 97 ~~~~L~~L~l~~~--------------------~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 154 (380)
.. +|+.+.+..+ ..... -...+.++.+|+.+.+.. .+..++.. +.++.+|+.+.+
T Consensus 116 c~-~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 116 CY-ALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp CT-TCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCC
T ss_pred cc-cchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEc
Confidence 22 2333333221 00110 112344455555555543 12222222 334455555554
Q ss_pred cccccceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcch
Q 035836 155 WECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWK 233 (380)
Q Consensus 155 ~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 233 (380)
.. .++.+.. .+..+..|+.+.+..+ ...+.......++|+.+.+......-.......+..++.+.+..+...
T Consensus 193 ~~--~~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-- 266 (394)
T 4fs7_A 193 PR--NLKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-- 266 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--
T ss_pred CC--CceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce--
Confidence 32 2333333 2233445555444332 122222223344566655543211001112244566666666554221
Q ss_pred hhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836 234 STIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC 312 (380)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 312 (380)
+... . +..+..++.+.... . .++. .++..+.+|+.+.+.. .++.++. .|.+|.+|+.+++.
T Consensus 267 i~~~-~--F~~~~~l~~~~~~~--~---~i~~------~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp-- 328 (394)
T 4fs7_A 267 IGGS-L--FYNCSGLKKVIYGS--V---IVPE------KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP-- 328 (394)
T ss_dssp ECSC-T--TTTCTTCCEEEECS--S---EECT------TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--
T ss_pred eecc-c--cccccccceeccCc--e---eecc------cccccccccccccccc--ccceechhhhcCCCCCCEEEeC--
Confidence 1111 1 55566666655543 1 1221 2235678899988865 5777766 78899999999996
Q ss_pred CCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECc
Q 035836 313 PKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDY 363 (380)
Q Consensus 313 ~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (380)
..++.++..++ ..+|+.+.+... ++ ..+...|.....+..+.++.
T Consensus 329 ~~v~~I~~~aF~~c~~L~~i~lp~~--l~----~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 329 YLVEEIGKRSFRGCTSLSNINFPLS--LR----KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCTT--CC----EECTTTBTTCTTCCEEEEEG
T ss_pred CcccEEhHHhccCCCCCCEEEECcc--cc----EehHHHhhCCCCCCEEEECC
Confidence 45888887766 468888887542 22 23344555556666666643
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=2e-10 Score=95.21 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=77.2
Q ss_pred CccEEEEecC-CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEec
Q 035836 100 SLRSLYVSHC-SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDI 178 (380)
Q Consensus 100 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 178 (380)
.++...+.++ +.++.+|..+..+++|++|++++| .+..+| .+..+++|+.|++++ +.+..++..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEEC
Confidence 3566666554 235566667777888888888874 455566 667778888888887 456666654444567888888
Q ss_pred cCCCCcccccccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCC
Q 035836 179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNM 229 (380)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 229 (380)
++|. +..+| .+..+++|+.|++++|.. +.++ ....+++|+.|++++|.
T Consensus 101 ~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 101 SYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence 7753 33444 455666777777776632 2211 12345556666665554
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.63 E-value=1.7e-10 Score=95.70 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=75.2
Q ss_pred CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCC
Q 035836 137 KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGL 216 (380)
Q Consensus 137 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 216 (380)
..+|..+..+++|++|++++ +.+..++ .+..+++|+.|++++|. +..+|..+..+++|+.|++++|.. +.+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l----- 108 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASL----- 108 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCH-----
T ss_pred hhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcC-----
Confidence 34444677788888888877 3566665 55556777777777653 334554444445566666665521 111
Q ss_pred CCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccc--ccccccCCCCCCCCcceEecccCCCccch
Q 035836 217 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL--EDKRLGTALPLPASLTSLWIEDFPNLERL 294 (380)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 294 (380)
+. +..+++|+.|++++ +.+..++. .. ..+++|++|+++++ .+...
T Consensus 109 ------------------~~-----~~~l~~L~~L~l~~--N~i~~~~~~~~l-------~~l~~L~~L~l~~N-~l~~~ 155 (198)
T 1ds9_A 109 ------------------SG-----IEKLVNLRVLYMSN--NKITNWGEIDKL-------AALDKLEDLLLAGN-PLYND 155 (198)
T ss_dssp ------------------HH-----HHHHHHSSEEEESE--EECCCHHHHHHH-------TTTTTCSEEEECSC-HHHHH
T ss_pred ------------------Cc-----cccCCCCCEEECCC--CcCCchhHHHHH-------hcCCCCCEEEecCC-ccccc
Confidence 11 34556667777766 34444332 22 35667777777763 33322
Q ss_pred ----------hh-hhccCCCCceEe
Q 035836 295 ----------SS-SIVDLQNLTILQ 308 (380)
Q Consensus 295 ----------~~-~~~~~~~L~~L~ 308 (380)
+. .+..+++|++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccccchHHHHHHHHHhCCCcEEEC
Confidence 11 477888888887
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=1.4e-07 Score=75.88 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=15.4
Q ss_pred ccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccC
Q 035836 143 LHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYD 180 (380)
Q Consensus 143 ~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~ 180 (380)
+..+++|++|++++ +.+..++... ..+++|++|++++
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 50 FDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCC
Confidence 34444444444444 2333333322 2344444444444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=1.6e-07 Score=75.81 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=32.1
Q ss_pred CCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccCCCCcccccc-cCCCCCCccEE
Q 035836 123 TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCERLEALPK-GLHNLTSLQEL 200 (380)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L 200 (380)
++|++|++++|......|..+..+++|++|++++ +.+..++... ..+++|+.|++++|.. ..+|. .+..+++|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEE
Confidence 3444444444222221123334444444444444 2344443332 2344444444444322 22222 23444444444
Q ss_pred EeccC
Q 035836 201 TIGKG 205 (380)
Q Consensus 201 ~l~~~ 205 (380)
++++|
T Consensus 111 ~L~~N 115 (174)
T 2r9u_A 111 YLYNN 115 (174)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 44443
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=6.8e-06 Score=75.48 Aligned_cols=264 Identities=15% Similarity=0.153 Sum_probs=145.7
Q ss_pred CCCCC-CccEEEEecCCCCccccC--CCCCCCCceEeecCC--cCccccccccceecCCCCccccccccceeEeecCCCc
Q 035836 2 CDTNS-SLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDC--DNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSL 76 (380)
Q Consensus 2 ~~~~~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 76 (380)
|..+. .|+.+.|-. .++.+.. +..|.+|+++.+... .+++.++.. .|..+.. |+.+.+.. ++
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~--------L~~i~~~~--~~ 125 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSE--------LTDIPILD--SV 125 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTT--------CCBCGGGT--TC
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechh-hchhccc--------ceeeccCC--cc
Confidence 44453 589998864 5777776 445899999998654 346777766 6666666 66665542 23
Q ss_pred ccccccCCCCccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcc
Q 035836 77 TCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIW 155 (380)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 155 (380)
+.+ +.-.+.... +|+.+.+... +..+ ...+..+.+|+.+.+.. .+..+........+|+.+.+.
T Consensus 126 ~~I----------~~~aF~~c~-~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 126 TEI----------DSEAFHHCE-ELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp SEE----------CTTTTTTCT-TCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEEC
T ss_pred cee----------hhhhhhhhc-ccccccccce--eeeecccceecccccccccccc--eeeEeccccccccceeEEEEC
Confidence 222 000223333 4666666532 2222 22445566666666543 233333332233344444443
Q ss_pred ccccceeccC-CCccCCCCCEEeccC--------------------------C---------CCccccc-ccCCCCCCcc
Q 035836 156 ECENLVSFTE-GGLPCAKLTRLDIYD--------------------------C---------ERLEALP-KGLHNLTSLQ 198 (380)
Q Consensus 156 ~~~~l~~l~~-~~~~~~~L~~L~l~~--------------------------~---------~~~~~~~-~~l~~~~~L~ 198 (380)
. .+..+.. .+..|.+++...... + ..+..+. .++.++++|+
T Consensus 191 ~--~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 191 A--KVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLA 268 (394)
T ss_dssp T--TCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCC
T ss_pred C--cccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeeccccc
Confidence 2 1111111 111122222221110 0 0111221 3567788888
Q ss_pred EEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCC
Q 035836 199 ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA 278 (380)
Q Consensus 199 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (380)
.+.+......-.......++.|+.+.+... +..+.... |.+|.+|+.+.+.. .++.+... ++..+.
T Consensus 269 ~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~a---F~~c~~L~~i~lp~---~v~~I~~~------aF~~C~ 334 (394)
T 4gt6_A 269 SVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESV---FAGCISLKSIDIPE---GITQILDD------AFAGCE 334 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEECCT---TCCEECTT------TTTTCT
T ss_pred EEecccccceecCcccccccccccccCCCc--ccccCcee---ecCCCCcCEEEeCC---cccEehHh------HhhCCC
Confidence 888765321111123356788998888642 33333222 88899999999965 46666543 246788
Q ss_pred CcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836 279 SLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID 311 (380)
Q Consensus 279 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 311 (380)
+|+.+.+.. .++.+.. .|.+|.+|+.+++.+
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 999999964 5777766 889999999999876
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=1e-07 Score=76.13 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCC----CCCcceEecccCCCccc
Q 035836 218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPL----PASLTSLWIEDFPNLER 293 (380)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 293 (380)
..|+.|++++|. +++..... +.++++|++|++++ |..+++..-.. +.. .++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~-C~~ItD~gL~~------L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCK-CHYIEDGCLER------LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEES-CTTCCHHHHHH------HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCC-CCccCHHHHHH------HHhcccccCCCCEEEcCCCCcCCH
Confidence 357777777776 44443322 56777888888887 66655432211 011 24577777777777765
Q ss_pred hhh-hhccCCCCceEeeecCCCCcc
Q 035836 294 LSS-SIVDLQNLTILQLIDCPKLKY 317 (380)
Q Consensus 294 l~~-~~~~~~~L~~L~l~~c~~l~~ 317 (380)
-.- .+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 433 556677777777777777665
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.50 E-value=1.1e-06 Score=70.61 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=59.4
Q ss_pred ccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEe
Q 035836 125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTI 202 (380)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l 202 (380)
.+.+++++ +.+..+|..+ .++|++|++++ +.+..++. .+..+++|++|++++|.. ..++ ..+..+++|+.|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEEC
Confidence 45666766 4556666554 36777777777 45666533 455567777777777643 3443 34567777777777
Q ss_pred ccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836 203 GKGVELPSLEE--DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 203 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 229 (380)
++|.. +.++. ...+++|+.|++++|.
T Consensus 86 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQL-KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcc-CEeCHHHhcCCCCCCEEEeCCCC
Confidence 77643 33322 3445666666666654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=1.4e-06 Score=70.27 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=56.4
Q ss_pred cEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccc-cCCCCCCccEEEec
Q 035836 126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPK-GLHNLTSLQELTIG 203 (380)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~ 203 (380)
+.+++++ +.+..+|..+. ++|++|++++ +.+..++. .+..+++|+.|++++|. ++.+|. .+..+++|+.|+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 5666666 45566665543 6777777776 45555533 44556677777777653 344443 34666777777777
Q ss_pred cCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836 204 KGVELPSLEE--DGLPTNLHSLEIDGNM 229 (380)
Q Consensus 204 ~~~~~~~~~~--~~~~~~L~~L~l~~~~ 229 (380)
+|.. +.++. ...+++|+.|++++|.
T Consensus 90 ~N~l-~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHL-KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence 6633 22322 2345555555555554
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=3.6e-05 Score=70.15 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCCCcceEecccCCCccchhh-hhccCCCCceEee
Q 035836 276 LPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQL 309 (380)
Q Consensus 276 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 309 (380)
.+++|+.+.+.+ ..++.++. .|.+|.+|+.+.+
T Consensus 284 ~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 284 GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccc-cccceehhhhhcCCCCCCEEEc
Confidence 444555555543 23444433 4455555555554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=0.00011 Score=66.79 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=87.5
Q ss_pred cCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836 169 PCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245 (380)
Q Consensus 169 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 245 (380)
.+.+|+.+.+... +..+. ..+.++..|+.+.+..+ ++.+. ....+.+|+.+.+... +..+.... |.++
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~a---F~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLL---CSGC 285 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTT---TTTC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccc---cccc
Confidence 3556666666532 33332 35667788888888653 33332 2356778888888654 22222222 7889
Q ss_pred CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC
Q 035836 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL 323 (380)
Q Consensus 246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~ 323 (380)
++|+.+.+.+ ..++.+.... +..+.+|+.+.+.. .++.+.. .|.+|.+|+.+.+.. .++.+...++
T Consensus 286 ~~L~~i~l~~--~~i~~I~~~a------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 286 SNLTKVVMDN--SAIETLEPRV------FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTCCEEEECC--TTCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred cccccccccc--cccceehhhh------hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence 9999999976 4566666533 46788999999974 5777766 788999999888853 4666665444
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=6.4e-07 Score=71.51 Aligned_cols=90 Identities=17% Similarity=0.313 Sum_probs=48.0
Q ss_pred CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCC---CCCccEEE
Q 035836 29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNL---PPSLRSLY 105 (380)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~L~~L~ 105 (380)
.+|+.|++++|. +.+.... .+..++. |+.|++++|..+++. .+. .+... .++|++|+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~--------L~~L~L~~C~~ItD~--------gL~--~L~~~~~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-HMEGLQY--------VEKIRLCKCHYIEDG--------CLE--RLSQLENLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-GGTTCSC--------CCEEEEESCTTCCHH--------HHH--HHHTCHHHHHHCCEEE
T ss_pred ceEeEEeCcCCC-ccHHHHH-HhcCCCC--------CCEEEeCCCCccCHH--------HHH--HHHhcccccCCCCEEE
Confidence 356777777776 6555544 3345555 777777776666543 111 11121 11466666
Q ss_pred EecCCChhh-hHhhccCCCCccEEeecCCCCCCc
Q 035836 106 VSHCSKLES-IAERLDNNTSLETIDISNCESLKI 138 (380)
Q Consensus 106 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~ 138 (380)
+++|..++. --..+..+++|++|++++|..++.
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 666655542 223344566666666666655543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=5.9e-06 Score=74.42 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=66.6
Q ss_pred cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCC-CccCCCCCEEecc
Q 035836 102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIY 179 (380)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~ 179 (380)
..++.+++..+..+|. +..+++|++|++++++.+..++ ..+..+++|+.|++++ +.+..++.. +..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCC
Confidence 3455555434667777 8788888888887645666555 4577788888888887 466666653 4567788888888
Q ss_pred CCCCcccccc-cCCCCCCccEEEeccCC
Q 035836 180 DCERLEALPK-GLHNLTSLQELTIGKGV 206 (380)
Q Consensus 180 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 206 (380)
+|.. ..+|. .+..++ |+.|++.+|.
T Consensus 89 ~N~l-~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNAL-ESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SSCC-SCCCSTTTCSCC-CCEEECCSSC
T ss_pred CCcc-ceeCHHHcccCC-ceEEEeeCCC
Confidence 7543 34443 333343 7777777664
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=1.9e-06 Score=77.83 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccc-----hhhhhccCCCCceEeeecC
Q 035836 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER-----LSSSIVDLQNLTILQLIDC 312 (380)
Q Consensus 244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c 312 (380)
.+|+|+.|.+.+ |........... . ...+++|++|+++. +.+.. +...+.++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~-~~i~~~~~~~la---~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVD-AEEQNVVVEMFL---E-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEES-CTTHHHHHHHHH---H-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCC-CCCchHHHHHHH---h-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 456777777766 332211111110 0 02456777777765 45554 2334456778888888775
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.5e-06 Score=78.50 Aligned_cols=137 Identities=18% Similarity=0.007 Sum_probs=80.8
Q ss_pred cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC------CCccc
Q 035836 190 GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD------DMVSF 263 (380)
Q Consensus 190 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~l~~~ 263 (380)
.+..+++|+.|.+.++.... ++.. ..++|++|++..|........... ...+|+|+.|+++.+.+ .+..+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHH
Confidence 34556788888887763322 2222 367899999887764332222221 23689999999863101 11111
Q ss_pred ccccccccCCCCCCCCcceEecccCCCccchhhhh---ccCCCCceEeeecCCCCccc-----CCC-CCcccccEEEecC
Q 035836 264 PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSI---VDLQNLTILQLIDCPKLKYF-----PEK-GLPSSLLELWIWD 334 (380)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~---~~~~~L~~L~l~~c~~l~~~-----~~~-~~~~~L~~L~l~~ 334 (380)
.... ....+++|++|.+.+|.........+ ..+++|++|+++. +.+++. +.. ...++|++|++++
T Consensus 243 ~~~l-----~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 243 RPLF-----SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGS-----CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHH-----hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1111 01247899999999864333222222 3578999999986 567662 221 1246899999998
Q ss_pred ch
Q 035836 335 CP 336 (380)
Q Consensus 335 c~ 336 (380)
|.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 85
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.23 E-value=4.9e-06 Score=74.97 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=64.5
Q ss_pred CccEEEEec-CCChhhhH-hhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCCCccCCCCCEE
Q 035836 100 SLRSLYVSH-CSKLESIA-ERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRL 176 (380)
Q Consensus 100 ~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 176 (380)
+|++|++++ | .+..++ ..+..+++|++|++++| .+..++ ..+.++++|+.|++++ +.+..++........|+.|
T Consensus 32 ~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 32 NLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp CCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEE
T ss_pred CeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEE
Confidence 699999996 6 466554 67899999999999995 455554 4578899999999998 6788888766554459999
Q ss_pred eccCCCC
Q 035836 177 DIYDCER 183 (380)
Q Consensus 177 ~l~~~~~ 183 (380)
++.+|..
T Consensus 109 ~l~~N~~ 115 (347)
T 2ifg_A 109 VLSGNPL 115 (347)
T ss_dssp ECCSSCC
T ss_pred EeeCCCc
Confidence 9998754
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.19 E-value=4.2e-07 Score=82.72 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=57.2
Q ss_pred CccEEEEecCCChhh----hHhhc-cCCCCccEEeecCCCCCC----cccccccCCCCCcEEEcccccccee-----ccC
Q 035836 100 SLRSLYVSHCSKLES----IAERL-DNNTSLETIDISNCESLK----ILPSGLHNLRQLQKIEIWECENLVS-----FTE 165 (380)
Q Consensus 100 ~L~~L~l~~~~~~~~----~~~~~-~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~ 165 (380)
+|++|++++|..-.. +...+ ...++|++|++++|.... .++..+..+++|++|++++| .+.. +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~ 205 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAA 205 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHH
Confidence 477777777642221 12222 235667777777753211 13333455667777777764 2332 122
Q ss_pred CCccCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCC
Q 035836 166 GGLPCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGV 206 (380)
Q Consensus 166 ~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~ 206 (380)
.+..+++|++|++++|.... .+...+...++|+.|++++|.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 33345577777777764422 222334456678888888774
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=3.3e-07 Score=83.39 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=97.5
Q ss_pred cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhh-hHhhccCCCCccEEeecCCCCCCc----c
Q 035836 65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLES-IAERLDNNTSLETIDISNCESLKI----L 139 (380)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~ 139 (380)
|+.|++++|. +.... ...+.. .+...+.+|++|++++|..-.. +......+++|++|++++|..... +
T Consensus 74 L~~L~Ls~n~-l~~~~-----~~~l~~-~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 74 LRQLNLAGVR-MTPVK-----CTVVAA-VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp CCEEECTTSC-CCHHH-----HHHHHH-HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred CCEEEecCCC-CCHHH-----HHHHHH-HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 9999999875 32210 011111 1122223699999999864332 222233456899999999643221 1
Q ss_pred cccc-cCCCCCcEEEcccccccee-----ccCCCccCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCCCCC
Q 035836 140 PSGL-HNLRQLQKIEIWECENLVS-----FTEGGLPCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGVELP 209 (380)
Q Consensus 140 ~~~~-~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~ 209 (380)
...+ ...++|+.|++++| .+.. +...+..+++|++|++++|.... .++..+...++|+.|++++|....
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1222 24678999999986 4433 33333456789999999986432 234556677899999999985322
Q ss_pred C----CC-CCCCCCCceEEEecCCCCc
Q 035836 210 S----LE-EDGLPTNLHSLEIDGNMEI 231 (380)
Q Consensus 210 ~----~~-~~~~~~~L~~L~l~~~~~~ 231 (380)
. +. .....++|++|++++|...
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 10 1124578999999998743
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.91 E-value=0.00079 Score=54.48 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=7.7
Q ss_pred hhccCCCCceEeeec
Q 035836 297 SIVDLQNLTILQLID 311 (380)
Q Consensus 297 ~~~~~~~L~~L~l~~ 311 (380)
.+...++|++|++++
T Consensus 146 ~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 146 MLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHCSSCCEEECCC
T ss_pred HHHhCCCcCEEeccC
Confidence 344445555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.82 E-value=0.00074 Score=54.64 Aligned_cols=12 Identities=17% Similarity=0.013 Sum_probs=7.6
Q ss_pred CCceEEEecCCC
Q 035836 218 TNLHSLEIDGNM 229 (380)
Q Consensus 218 ~~L~~L~l~~~~ 229 (380)
+.|++|++++|.
T Consensus 151 ~~L~~L~L~~n~ 162 (185)
T 1io0_A 151 TTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCCSS
T ss_pred CCcCEEeccCCC
Confidence 456666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.50 E-value=0.0015 Score=56.01 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=45.9
Q ss_pred cCCCCccEEeecCCCCCC--cccccccCCCCCcEEEccccccceeccCCCccCC--CCCEEeccCCCCcccccc------
Q 035836 120 DNNTSLETIDISNCESLK--ILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCA--KLTRLDIYDCERLEALPK------ 189 (380)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~~~~~~------ 189 (380)
.++++|+.|++++|.... .++..+..+++|+.|++++ +.+..+. .+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457788888888743322 2334455678888888877 4555442 122222 677777777665443331
Q ss_pred -cCCCCCCccEEE
Q 035836 190 -GLHNLTSLQELT 201 (380)
Q Consensus 190 -~l~~~~~L~~L~ 201 (380)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234556666553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.46 E-value=0.0014 Score=56.06 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=18.1
Q ss_pred CCCCCEEeccCCCCcc--cccccCCCCCCccEEEeccC
Q 035836 170 CAKLTRLDIYDCERLE--ALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 170 ~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 205 (380)
+++|+.|++++|.... .++..+..+++|+.|+|++|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 4556666666543322 23333344556666666555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.71 E-value=0.091 Score=39.40 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836 276 LPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP 313 (380)
Q Consensus 276 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 313 (380)
.+++|++|+|++ +.++.++. .+..+++|++|++.+++
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455678888877 67777766 66777778888777743
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.61 E-value=0.75 Score=34.26 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.2
Q ss_pred CcEEEc
Q 035836 149 LQKIEI 154 (380)
Q Consensus 149 L~~L~l 154 (380)
|++|++
T Consensus 33 l~~L~L 38 (130)
T 3rfe_A 33 TTELVL 38 (130)
T ss_dssp CSEEEC
T ss_pred CCEEEC
Confidence 333333
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.87 E-value=1 Score=36.33 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=16.0
Q ss_pred CCCCEEeccCCCCcc----cccccCCCCCCccEEEeccC
Q 035836 171 AKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKG 205 (380)
Q Consensus 171 ~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~ 205 (380)
+.|++|+++.|..-. .+.+++..-+.|+.|+++++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 345555555443211 22233444445666666543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.66 E-value=3 Score=33.51 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=16.6
Q ss_pred CCCccEEEeccCCCCCC-----CCCCCCCCCceEEEecCC
Q 035836 194 LTSLQELTIGKGVELPS-----LEEDGLPTNLHSLEIDGN 228 (380)
Q Consensus 194 ~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~ 228 (380)
-+.|+.|+|+.|..-.. ......-+.|++|+|+++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34566666666532111 011223345666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.43 E-value=23 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=19.9
Q ss_pred CCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836 275 PLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID 311 (380)
Q Consensus 275 ~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 311 (380)
..+.+|+.+.+-. .++.+.. .|.+|.+|+.+.+.+
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 4445555555543 3444444 566677777777765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.77 E-value=76 Score=21.89 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeec
Q 035836 18 SLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICS 72 (380)
Q Consensus 18 ~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 72 (380)
.++.+.. +..|.+|+++.+-. +++.+... .|.+|.. |+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~-aF~~C~~--------L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDG-MFSGCTA--------LEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTT-SSTTCTT--------CCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHH-HHhccCC--------ccEEEEcC
Confidence 3445544 44588888888854 36677766 7788888 88888875
Done!