Your job contains 1 sequence.
>035839
MASNKRDEYYTCFEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELC
NLSSGKTTHCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTK
GFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEV
DFAPPLDYKEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035839
(238 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2050054 - symbol:UFD1 "AT2G21270" species:3702... 664 3.2e-65 1
TAIR|locus:2120247 - symbol:AT4G38930 "AT4G38930" species... 662 5.2e-65 1
TAIR|locus:2066122 - symbol:AT2G29070 species:3702 "Arabi... 659 1.1e-64 1
MGI|MGI:109353 - symbol:Ufd1l "ubiquitin fusion degradati... 507 2.0e-51 2
UNIPROTKB|J9NYF2 - symbol:UFD1L "Uncharacterized protein"... 506 2.0e-51 2
UNIPROTKB|Q92890 - symbol:UFD1L "Ubiquitin fusion degrada... 506 2.0e-51 2
UNIPROTKB|F1RK61 - symbol:UFD1L "Uncharacterized protein"... 505 2.6e-51 2
ZFIN|ZDB-GENE-040718-150 - symbol:ufd1l "ubiquitin fusion... 529 6.5e-51 1
DICTYBASE|DDB_G0271122 - symbol:ufd1 "ubiquitin fusion de... 488 2.0e-49 2
UNIPROTKB|F1PAI5 - symbol:UFD1L "Uncharacterized protein"... 485 3.3e-49 2
RGD|619822 - symbol:Ufd1l "ubiquitin fusion degradation 1... 507 1.4e-48 1
UNIPROTKB|F1NVD8 - symbol:UFD1L "Uncharacterized protein"... 502 4.7e-48 1
UNIPROTKB|Q0P568 - symbol:UFD1L "Ubiquitin fusion degrada... 497 1.6e-47 1
UNIPROTKB|A6NJ11 - symbol:UFD1L "Ubiquitin fusion degrada... 452 9.7e-46 2
FB|FBgn0036136 - symbol:Ufd1-like "Ubiquitin fusion-degra... 455 4.5e-43 1
GENEDB_PFALCIPARUM|PF14_0178 - symbol:PF14_0178 "hypothet... 442 1.1e-41 1
UNIPROTKB|Q8ILR6 - symbol:UFD1 "Ubiquitin fusion degradat... 442 1.1e-41 1
UNIPROTKB|C9IZG3 - symbol:UFD1L "Ubiquitin fusion degrada... 441 1.4e-41 1
POMBASE|SPBC16A3.09c - symbol:ufd1 "Cdc48-Ufd1-Npl4 compl... 399 1.5e-39 2
CGD|CAL0002326 - symbol:orf19.5833 species:5476 "Candida ... 401 2.4e-37 1
SGD|S000003280 - symbol:UFD1 "Substrate-recruiting cofact... 388 5.7e-36 1
UNIPROTKB|G4NAF1 - symbol:MGG_03175 "Ubiquitin fusion deg... 379 5.1e-35 1
WB|WBGene00006733 - symbol:ufd-1 species:6239 "Caenorhabd... 336 1.8e-30 1
UNIPROTKB|C9J6N9 - symbol:UFD1L "Ubiquitin fusion degrada... 317 1.9e-28 1
UNIPROTKB|C9JNP9 - symbol:UFD1L "Ubiquitin fusion degrada... 294 5.2e-26 1
TAIR|locus:2130120 - symbol:AT4G15420 species:3702 "Arabi... 274 3.9e-23 1
UNIPROTKB|C9J7C8 - symbol:UFD1L "Ubiquitin fusion degrada... 202 2.9e-16 1
ASPGD|ASPL0000066677 - symbol:AN10877 species:162425 "Eme... 146 4.9e-09 2
>TAIR|locus:2050054 [details] [associations]
symbol:UFD1 "AT2G21270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005829
EMBL:CP002685 EMBL:AC006841 GO:GO:0006511 eggNOG:COG5140
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 EMBL:AK317375
IPI:IPI00846355 RefSeq:NP_001077933.1 UniGene:At.39582
ProteinModelPortal:A8MQW3 SMR:A8MQW3 PaxDb:A8MQW3 PRIDE:A8MQW3
EnsemblPlants:AT2G21270.3 GeneID:816666 KEGG:ath:AT2G21270
TAIR:At2g21270 OMA:AERTSHC PhylomeDB:A8MQW3 ProtClustDB:CLSN2688302
Genevestigator:A8MQW3 Uniprot:A8MQW3
Length = 340
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 127/225 (56%), Positives = 158/225 (70%)
Query: 11 TCFEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHC 70
T FE+ Y CY S + KPQ E GDKIIMP SA DRLA + YPM+FEL N + THC
Sbjct: 32 TTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAGIERVTHC 91
Query: 71 GVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPR 130
GV+EF A+EG IY+P WMM N+ LQE ++VRV NV+L K TY+KLQPHT FLD +SNP+
Sbjct: 92 GVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTDFLD-ISNPK 150
Query: 131 AVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKE 190
A+LE LR +SCLT+GD+IM+ +N KY+ID++ETKP+NA+SI ETDCEVDFAPPLDYKE
Sbjct: 151 AILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLDYKE 210
Query: 191 PDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
P+ P++ EE V +E KF FTG G+ L
Sbjct: 211 PERPTAPSAAKGPAKAEE--------VVDEPEPKFNPFTGSGRRL 247
>TAIR|locus:2120247 [details] [associations]
symbol:AT4G38930 "AT4G38930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;ISS] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002687 GO:GO:0006511 EMBL:AL035679
EMBL:AL161594 HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555
OMA:NQTNEAS IPI:IPI00528563 PIR:T06053 RefSeq:NP_974709.1
UniGene:At.2837 UniGene:At.67000 ProteinModelPortal:Q9SVK0
SMR:Q9SVK0 PRIDE:Q9SVK0 DNASU:830048 EnsemblPlants:AT4G38930.2
GeneID:830048 KEGG:ath:AT4G38930 TAIR:At4g38930 InParanoid:Q9SVK0
PhylomeDB:Q9SVK0 ProtClustDB:CLSN2917686 ArrayExpress:Q9SVK0
Genevestigator:Q9SVK0 Uniprot:Q9SVK0
Length = 315
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 127/225 (56%), Positives = 162/225 (72%)
Query: 11 TCFEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHC 70
T FE+ Y CY S + KPQ E GDKIIMP SA DRLA ++ YPM+FEL N S+ +HC
Sbjct: 11 TTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSHC 70
Query: 71 GVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPR 130
GV+EF A+EG IY+P WMM N+ LQE ++VRV NV+L K TY+KLQPHT FLD ++NP+
Sbjct: 71 GVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLD-IANPK 129
Query: 131 AVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKE 190
A+LE LR +SCLT GD+IM+ +N KY+ID++E KPSN +SI ETDCEVDFAPPLDYKE
Sbjct: 130 AILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKE 189
Query: 191 PDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
P+ + P P++ E ++K+ A EA KF FTG G+ L
Sbjct: 190 PERPVA----PAPAKGEAKAKEVDVA---EAEPKFNPFTGSGRRL 227
>TAIR|locus:2066122 [details] [associations]
symbol:AT2G29070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002685 GO:GO:0006511 HOGENOM:HOG000212737
KO:K14016 OMA:IDKAHLE PANTHER:PTHR12555 EMBL:BT011682 EMBL:BT012260
IPI:IPI00519577 RefSeq:NP_973557.1 UniGene:At.43163
ProteinModelPortal:Q6NLS0 SMR:Q6NLS0 EnsemblPlants:AT2G29070.2
GeneID:817455 KEGG:ath:AT2G29070 TAIR:At2g29070 InParanoid:Q6NLS0
PhylomeDB:Q6NLS0 ProtClustDB:CLSN2918124 Genevestigator:Q6NLS0
Uniprot:Q6NLS0
Length = 312
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 132/228 (57%), Positives = 167/228 (73%)
Query: 13 FEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGV 72
FE+ Y CY ++ + K E GDKIIMP SA DRLA + YPM+F+L N+S KT+HCGV
Sbjct: 8 FEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSHCGV 67
Query: 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAV 132
+EFTADEG +YLP WMM NM L+E ++++V N+SL K TY+KLQPHT+ FLD +SNP+A+
Sbjct: 68 LEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLD-ISNPKAI 126
Query: 133 LEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPD 192
LE LR +SCLTTGDTIM+ +N +YYI+V+E KPS+AVSI ETDCEVDFAPPLDYKEP+
Sbjct: 127 LETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKEPE 186
Query: 193 --EKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
+KL P QV+E+ ++P A K KF FTG GK L K
Sbjct: 187 KPQKLTPSNKR-PLQVKEE--EEP-ASKVP---KFTPFTGSGKRLDGK 227
>MGI|MGI:109353 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like"
species:10090 "Mus musculus" [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=ISO] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 MGI:MGI:109353 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 EMBL:CH466521 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW
EMBL:U64445 EMBL:AK147138 EMBL:AK169062 EMBL:BC006630
IPI:IPI00656165 RefSeq:NP_035802.3 UniGene:Mm.237594
ProteinModelPortal:P70362 SMR:P70362 STRING:P70362
PhosphoSite:P70362 REPRODUCTION-2DPAGE:P70362 PaxDb:P70362
PRIDE:P70362 Ensembl:ENSMUST00000005394 Ensembl:ENSMUST00000115578
GeneID:22230 KEGG:mmu:22230 InParanoid:Q923C4 OMA:IRNSRPQ
NextBio:302271 Bgee:P70362 CleanEx:MM_UFD1L Genevestigator:P70362
GermOnline:ENSMUSG00000005262 Uniprot:P70362
Length = 307
Score = 507 (183.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 111/230 (48%), Positives = 142/230 (61%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ R V +E ++ A E F+AF+G G L K
Sbjct: 198 KEPE-----RPVQHEESIEGEADHSGYA--GEVG--FRAFSGSGNRLDGK 238
Score = 44 (20.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 283 EDEAGGRFIAFSGEGQSL 300
>UNIPROTKB|J9NYF2 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 KO:K14016
PANTHER:PTHR12555 CTD:7353 EMBL:AAEX03014865 EMBL:AAEX03014866
RefSeq:XP_850373.3 Ensembl:ENSCAFT00000047839 GeneID:608300
KEGG:cfa:608300 Uniprot:J9NYF2
Length = 307
Score = 506 (183.2 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 111/230 (48%), Positives = 143/230 (62%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ R+V Q EE ++ + F+AF+G G L K
Sbjct: 198 KEPE-----RQV----QHEESAEGEADHSGYAGELGFRAFSGSGNRLDGK 238
Score = 45 (20.9 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 283 EDEAGGRFVAFSGEGQSL 300
>UNIPROTKB|Q92890 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0005102 "receptor binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=TAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=TAS] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 GO:GO:0005829 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0001501 GO:GO:0006511 Orphanet:567
GO:GO:0004843 EMBL:AC000087 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:U64444 EMBL:AF141201 EMBL:CR456607
EMBL:AK225877 EMBL:AC000068 EMBL:BC001049 EMBL:BC005087
IPI:IPI00218292 IPI:IPI00655754 IPI:IPI00852988
RefSeq:NP_001030324.2 RefSeq:NP_005650.2 UniGene:Hs.474213 PDB:2YUJ
PDBsum:2YUJ ProteinModelPortal:Q92890 SMR:Q92890 DIP:DIP-45954N
IntAct:Q92890 MINT:MINT-2837704 STRING:Q92890 PhosphoSite:Q92890
DMDM:160332310 OGP:Q92890 PaxDb:Q92890 PRIDE:Q92890 DNASU:7353
Ensembl:ENST00000263202 Ensembl:ENST00000399523 GeneID:7353
KEGG:hsa:7353 UCSC:uc002zpm.2 CTD:7353 GeneCards:GC22M019437
HGNC:HGNC:12520 HPA:HPA030287 MIM:601754 neXtProt:NX_Q92890
PharmGKB:PA37167 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW ChiTaRS:UFD1L
EvolutionaryTrace:Q92890 GenomeRNAi:7353 NextBio:28788
ArrayExpress:Q92890 Bgee:Q92890 CleanEx:HS_UFD1L
Genevestigator:Q92890 Uniprot:Q92890
Length = 307
Score = 506 (183.2 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 111/230 (48%), Positives = 143/230 (62%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ R+V Q EE ++ + F+AF+G G L K
Sbjct: 198 KEPE-----RQV----QHEESTEGEADHSGYAGELGFRAFSGSGNRLDGK 238
Score = 45 (20.9 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 283 EDEAGGRFVAFSGEGQSL 300
>UNIPROTKB|F1RK61 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:CU468637 EMBL:CU618331 Ensembl:ENSSSCT00000011082
Uniprot:F1RK61
Length = 307
Score = 505 (182.8 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 109/230 (47%), Positives = 142/230 (61%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ ++ Q EE ++ + F+AF+G G L K
Sbjct: 198 KEPERQI---------QHEESAEGEADHGGYAGELGFRAFSGSGNRLDGK 238
Score = 45 (20.9 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 283 EDEAGGRFVAFSGEGQSL 300
>ZFIN|ZDB-GENE-040718-150 [details] [associations]
symbol:ufd1l "ubiquitin fusion degradation 1-like"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042221 "response to chemical
stimulus" evidence=IDA] InterPro:IPR004854 Pfam:PF03152
ZFIN:ZDB-GENE-040718-150 GO:GO:0042221 GO:GO:0006511 EMBL:BX323451
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OMA:IRNSRPQ
EMBL:FP085395 EMBL:BC076020 EMBL:BC153586 EMBL:AY648824
IPI:IPI00489675 RefSeq:NP_001002451.1 UniGene:Dr.79033 SMR:Q6DRD5
STRING:Q6DRD5 Ensembl:ENSDART00000034968 GeneID:436724
KEGG:dre:436724 InParanoid:Q6DRD5 NextBio:20831165 Uniprot:Q6DRD5
Length = 308
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 113/230 (49%), Positives = 146/230 (63%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y CYS+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEGF YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGFCYLPHWMMQNLLLEEGGLVQVESVNLMVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ R + P EE ++++ + + F+AFTG G L K
Sbjct: 198 KEPE-----RHMQHP---EEPAEEETDPSNYDMDLGFRAFTGSGNRLDGK 239
>DICTYBASE|DDB_G0271122 [details] [associations]
symbol:ufd1 "ubiquitin fusion degradation protein
UFD1 family protein" species:44689 "Dictyostelium discoideum"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA;ISS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
dictyBase:DDB_G0271122 GO:GO:0043161 GenomeReviews:CM000151_GR
EMBL:AAFI02000006 GO:GO:0006511 eggNOG:COG5140 KO:K14016
PANTHER:PTHR12555 RefSeq:XP_645814.1 HSSP:P53044
ProteinModelPortal:Q55BK0 SMR:Q55BK0 STRING:Q55BK0
EnsemblProtists:DDB0238023 GeneID:8617805 KEGG:ddi:DDB_G0271122
OMA:NQTNEAS Uniprot:Q55BK0
Length = 330
Score = 488 (176.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 91/180 (50%), Positives = 128/180 (71%)
Query: 13 FEKHYHCYSLSHVAKPQH--EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHC 70
+E+ + + +S + K +H E G KI++P SA + L+ + YPM+FE+ N SGK +HC
Sbjct: 25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHC 84
Query: 71 GVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPR 130
GV+EF A+EG YLP WMM N++L+E E + + N +LAK T++K+QP T F+D +SNP+
Sbjct: 85 GVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFID-ISNPK 143
Query: 131 AVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKE 190
AVLE LRKF+ LT D IMI +N +KYY+ V+E KP+NA+SI E D VDFAPP+D KE
Sbjct: 144 AVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKE 203
Score = 44 (20.5 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 218 KEEANNKFKAFTGKGKLL 235
K E + KFK+F+GKG L
Sbjct: 312 KNE-DTKFKSFSGKGHSL 328
Score = 43 (20.2 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 201 PFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
P P +++ + + ++ KFKAF G G L K
Sbjct: 234 PIPGGKKKKDESDSDSDSDD-EPKFKAFAGTGARLDGK 270
>UNIPROTKB|F1PAI5 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 PANTHER:PTHR12555
OMA:IRNSRPQ EMBL:AAEX03014865 EMBL:AAEX03014866
Ensembl:ENSCAFT00000023194 Uniprot:F1PAI5
Length = 310
Score = 485 (175.8 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 111/234 (47%), Positives = 144/234 (61%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 18 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 77
Query: 69 HCGVVEFTADEGFIYLPNW-MMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELS 127
HCGV+EF ADEG YLP+W MM N+ L+E LV+V +V+L ATY K QP + FLD ++
Sbjct: 78 HCGVLEFVADEGICYLPHWWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-IT 136
Query: 128 NPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDC---EVDFAP 184
NP+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D +VDF
Sbjct: 137 NPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNGPKVDFDA 196
Query: 185 PLDYKEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
PL YKEP+ R+V Q EE ++ + F+AF+G G L K
Sbjct: 197 PLGYKEPE-----RQV----QHEESAEGEADHSGYAGELGFRAFSGSGNRLDGK 241
Score = 45 (20.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 286 EDEAGGRFVAFSGEGQSL 303
>RGD|619822 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like (yeast)"
species:10116 "Rattus norvegicus" [GO:0005102 "receptor binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
RGD:619822 GO:GO:0005829 GO:GO:0005634 GO:GO:0043161 EMBL:CH473999
KO:K14016 PANTHER:PTHR12555 HSSP:P53044 CTD:7353 EMBL:AF234601
EMBL:BC161818 IPI:IPI00195248 RefSeq:NP_445870.1 UniGene:Rn.11946
ProteinModelPortal:Q9ES53 SMR:Q9ES53 IntAct:Q9ES53
PhosphoSite:Q9ES53 PRIDE:Q9ES53 GeneID:84478 KEGG:rno:84478
NextBio:616986 Genevestigator:Q9ES53 Uniprot:Q9ES53
Length = 307
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 111/230 (48%), Positives = 142/230 (61%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ R V +E ++ A E F+AF+G G L K
Sbjct: 198 KEPE-----RPVQHEESIEGEADHSGYA--GEVG--FRAFSGSGNRLDGK 238
>UNIPROTKB|F1NVD8 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:AADN02034776 IPI:IPI00589702 Ensembl:ENSGALT00000034831
Uniprot:F1NVD8
Length = 307
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 109/230 (47%), Positives = 142/230 (61%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRSFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
KEP+ +Q EE + + ++ F+AF+G G L K
Sbjct: 198 KEPERS---------AQHEETTDVEADHSGYVSDVGFRAFSGSGNRLDGK 238
>UNIPROTKB|Q0P568 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation 1 like"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 eggNOG:COG5140 GeneTree:ENSGT00390000002408
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 CTD:7353
HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW EMBL:DAAA02045760
EMBL:BC120441 IPI:IPI00907531 RefSeq:NP_001068768.1
UniGene:Bt.11225 SMR:Q0P568 STRING:Q0P568
Ensembl:ENSBTAT00000056937 GeneID:507124 KEGG:bta:507124
OMA:AISIIEC NextBio:20867911 Uniprot:Q0P568
Length = 231
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 99/186 (53%), Positives = 126/186 (67%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRVT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEK 194
KEP+ +
Sbjct: 198 KEPERQ 203
>UNIPROTKB|A6NJ11 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 HOVERGEN:HBG001266 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:A6NJ11 SMR:A6NJ11 STRING:A6NJ11 PRIDE:A6NJ11
Ensembl:ENST00000360834 ArrayExpress:A6NJ11 Bgee:A6NJ11
Uniprot:A6NJ11
Length = 296
Score = 452 (164.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 103/226 (45%), Positives = 136/226 (60%)
Query: 13 FEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGV 72
F Y C+S+S +A P D+ + + RL + YPM+F+L N +S + THCGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAV 132
+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++NP+AV
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNPKAV 130
Query: 133 LEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPD 192
LE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL YKEP+
Sbjct: 131 LENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 190
Query: 193 EKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
R+V Q EE ++ + F+AF+G G L K
Sbjct: 191 -----RQV----QHEESTEGEADHSGYAGELGFRAFSGSGNRLDGK 227
Score = 45 (20.9 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 218 KEEANNKFKAFTGKGKLL 235
++EA +F AF+G+G+ L
Sbjct: 272 EDEAGGRFVAFSGEGQSL 289
>FB|FBgn0036136 [details] [associations]
symbol:Ufd1-like "Ubiquitin fusion-degradation 1-like"
species:7227 "Drosophila melanogaster" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=NAS] InterPro:IPR004854 Pfam:PF03152 EMBL:AE014296
GO:GO:0000502 GO:GO:0006511 GO:GO:0032436 eggNOG:COG5140
GeneTree:ENSGT00390000002408 KO:K14016 PANTHER:PTHR12555
EMBL:AF228282 EMBL:AF228283 EMBL:AY060735 RefSeq:NP_524023.1
UniGene:Dm.927 ProteinModelPortal:Q9VTF9 SMR:Q9VTF9 DIP:DIP-21844N
IntAct:Q9VTF9 MINT:MINT-755529 STRING:Q9VTF9 PaxDb:Q9VTF9
PRIDE:Q9VTF9 EnsemblMetazoa:FBtr0076223 GeneID:39254
KEGG:dme:Dmel_CG6233 CTD:39254 FlyBase:FBgn0036136
InParanoid:Q9VTF9 OMA:YKCFSVS OrthoDB:EOG463XTR PhylomeDB:Q9VTF9
GenomeRNAi:39254 NextBio:812728 Bgee:Q9VTF9 GermOnline:CG6233
Uniprot:Q9VTF9
Length = 316
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 90/184 (48%), Positives = 122/184 (66%)
Query: 13 FEKHYHCYSLSHVAKPQH---EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTH 69
F +Y C+S+S + + E G KIIMP SA D L V YPM+F+L N+ +++H
Sbjct: 17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSH 76
Query: 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129
GV+EF ADEG YLP+WMM+N+ L E +++ + +VSL AT+ K QPH+ FLD ++NP
Sbjct: 77 AGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLD-ITNP 135
Query: 130 RAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYK 189
+AVLE LR F+CLT GD I I +N+ Y + VLETKP NAVSI E D V+F P+ YK
Sbjct: 136 KAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYK 195
Query: 190 EPDE 193
+ E
Sbjct: 196 DHSE 199
>GENEDB_PFALCIPARUM|PF14_0178 [details] [associations]
symbol:PF14_0178 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 92/215 (42%), Positives = 139/215 (64%)
Query: 13 FEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGV 72
F++ Y CY +S + K E G+KII+PQ+A + LA + +PM+FE+ N + K TH GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAV 132
+EF +DEG ++P WMM + L+E ++VRVT+VSL K T++KL+P +K F+ ELSN RAV
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFM-ELSNHRAV 140
Query: 133 LEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPD 192
LE LR ++ LT GD I+I + Y I +++ KP+ A +I ETD EV+F P+D+ EP
Sbjct: 141 LETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEPV 200
Query: 193 EKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKA 227
+ V VP EE++K + + + + + KA
Sbjct: 201 Q-YVTEIVP-----EEENKFKGKGQRTDGKSCHKA 229
>UNIPROTKB|Q8ILR6 [details] [associations]
symbol:UFD1 "Ubiquitin fusion degradation protein UFD1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 92/215 (42%), Positives = 139/215 (64%)
Query: 13 FEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGV 72
F++ Y CY +S + K E G+KII+PQ+A + LA + +PM+FE+ N + K TH GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAV 132
+EF +DEG ++P WMM + L+E ++VRVT+VSL K T++KL+P +K F+ ELSN RAV
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFM-ELSNHRAV 140
Query: 133 LEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPD 192
LE LR ++ LT GD I+I + Y I +++ KP+ A +I ETD EV+F P+D+ EP
Sbjct: 141 LETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEPV 200
Query: 193 EKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKA 227
+ V VP EE++K + + + + + KA
Sbjct: 201 Q-YVTEIVP-----EEENKFKGKGQRTDGKSCHKA 229
>UNIPROTKB|C9IZG3 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:C9IZG3 SMR:C9IZG3 STRING:C9IZG3
Ensembl:ENST00000421968 UCSC:uc010grq.2 ArrayExpress:C9IZG3
Bgee:C9IZG3 Uniprot:C9IZG3
Length = 190
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 91/180 (50%), Positives = 118/180 (65%)
Query: 13 FEKHYHCYSLSHVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGV 72
F Y C+S+S +A P D+ + + RL + YPM+F+L N +S + THCGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAV 132
+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++NP+AV
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNPKAV 130
Query: 133 LEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPD 192
LE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL YKEP+
Sbjct: 131 LENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 190
>POMBASE|SPBC16A3.09c [details] [associations]
symbol:ufd1 "Cdc48-Ufd1-Npl4 complex subunit Ufd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0033554 "cellular response to stress" evidence=IEP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO]
InterPro:IPR004854 Pfam:PF03152 PomBase:SPBC16A3.09c GO:GO:0005829
GO:GO:0005634 GO:GO:0033554 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030433 GO:GO:0034098 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:AJ005825 EMBL:AJ005824
EMBL:AF034137 PIR:T43554 PIR:T43667 RefSeq:NP_596780.1
ProteinModelPortal:O42915 SMR:O42915 STRING:O42915
EnsemblFungi:SPBC16A3.09c.1 GeneID:2539623 KEGG:spo:SPBC16A3.09c
OMA:ARRNITW OrthoDB:EOG4BP4N3 NextBio:20800779 Uniprot:O42915
Length = 342
Score = 399 (145.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 80/188 (42%), Positives = 120/188 (63%)
Query: 13 FEKHYHCYSLSHVA---KPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTH 69
F+ Y CY ++ + +P G K+I+P SA ++L+ V YPM+F+ N ++ K TH
Sbjct: 32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTH 91
Query: 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129
GV+EF A+EG +YLP WMM + L+ +LVRV N +A+ +Y+KLQP + FLD +++
Sbjct: 92 GGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLD-ITDH 150
Query: 130 RAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNA---VSITETDCEVDFAPPL 186
RAVLE LR FS LT D I++N+ Y I V++ +P ++ VS+ ETD VDF PP+
Sbjct: 151 RAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPI 210
Query: 187 DYKEPDEK 194
Y+E +K
Sbjct: 211 GYEESLQK 218
Score = 39 (18.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 203 PSQVEEQSKQQPQAVK-EEANNKFKA 227
PS +EE SK+ P K E A +A
Sbjct: 297 PS-IEEDSKKDPNLFKFEGAGTSLRA 321
>CGD|CAL0002326 [details] [associations]
symbol:orf19.5833 species:5476 "Candida albicans" [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0071629 "cytoplasm-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IEA]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
CGD:CAL0002326 GO:GO:0006511 EMBL:AACQ01000088 EMBL:AACQ01000087
eggNOG:COG5140 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_715308.1
RefSeq:XP_715373.1 ProteinModelPortal:Q5A0H8 SMR:Q5A0H8
STRING:Q5A0H8 GeneID:3643035 GeneID:3643074 KEGG:cal:CaO19.13255
KEGG:cal:CaO19.5833 Uniprot:Q5A0H8
Length = 363
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 88/217 (40%), Positives = 127/217 (58%)
Query: 13 FEKHYHCYSLSH----VAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
FE+++ CY ++ + K G KI +P SA ++L + YPM+FE+ N + K T
Sbjct: 24 FEEYFRCYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPMLFEIKNEQNEKLT 83
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
H GV+EF A+EG YLP WMM+ ++L L+++TN L ++K++P + FLD +S+
Sbjct: 84 HSGVLEFIAEEGRTYLPQWMMNTLELTPGSLIKITNCDLNLGKFVKIEPQSVDFLD-ISD 142
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKP---SNAVSITETDCEVDFAPP 185
P+AVLE +LRKFS LT D I + +N++ Y I VLE KP S + + ETD E DFAP
Sbjct: 143 PKAVLENVLRKFSTLTVNDIIEVNYNDAIYGIRVLEVKPDSTSKGICVVETDLETDFAPL 202
Query: 186 LDYKEPDEKLVKRKVPFPSQVEEQSKQ-QPQAVKEEA 221
+ Y EP+ K P VE SK P V + A
Sbjct: 203 VGYVEPEYK--------PKTVEPSSKPIDPSKVNKSA 231
>SGD|S000003280 [details] [associations]
symbol:UFD1 "Substrate-recruiting cofactor of the
Cdc48p-Npl4p-Ufd1p segregase" species:4932 "Saccharomyces
cerevisiae" [GO:0071712 "ER-associated misfolded protein catabolic
process" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IMP]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0071629
"cytoplasm-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR004854 Pfam:PF03152
SGD:S000003280 GO:GO:0005634 EMBL:BK006941 GO:GO:0031593
GO:GO:0034098 GO:GO:0030970 GO:GO:0071629 GO:GO:0071712
GO:GO:1900182 EMBL:DQ115391 EMBL:Z72833 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 OrthoDB:EOG4BP4N3 EMBL:U22153 EMBL:U17264
EMBL:AY692806 PIR:S59814 RefSeq:NP_011562.1 PDB:1ZC1 PDBsum:1ZC1
ProteinModelPortal:P53044 SMR:P53044 DIP:DIP-1476N IntAct:P53044
MINT:MINT-393265 STRING:P53044 PaxDb:P53044 PeptideAtlas:P53044
EnsemblFungi:YGR048W GeneID:852939 KEGG:sce:YGR048W CYGD:YGR048w
OMA:RCYPIAM EvolutionaryTrace:P53044 NextBio:972678
Genevestigator:P53044 GermOnline:YGR048W Uniprot:P53044
Length = 361
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 77/192 (40%), Positives = 118/192 (61%)
Query: 13 FEKHYHCYSLS----HVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
FE+ + CY ++ + K G KI +P SA +L+ + YPM+F+L +G+ T
Sbjct: 21 FEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVT 80
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
H GV+EF A+EG +YLP WMM+ + +Q L+++++ + ++KL+P + FLD +S+
Sbjct: 81 HGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLD-ISD 139
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKP---SNAVSITETDCEVDFAPP 185
P+AVLE +LR FS LT D I I +N + I +LE KP S ++ + ETD DFAPP
Sbjct: 140 PKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199
Query: 186 LDYKEPDEKLVK 197
+ Y EPD K +K
Sbjct: 200 VGYVEPDYKALK 211
>UNIPROTKB|G4NAF1 [details] [associations]
symbol:MGG_03175 "Ubiquitin fusion degradation protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511
EMBL:CM001234 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_003716815.1
ProteinModelPortal:G4NAF1 SMR:G4NAF1 EnsemblFungi:MGG_03175T0
GeneID:2677027 KEGG:mgr:MGG_03175 Uniprot:G4NAF1
Length = 379
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 77/188 (40%), Positives = 115/188 (61%)
Query: 13 FEKHYHCYSLSHVA---KPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTH 69
F+++Y CY + V +P+ G KII+P SA ++++ V +P++ EL N + K TH
Sbjct: 17 FDEYYRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGENDKHTH 76
Query: 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129
GV+EF A+EG YLP WMM ++L +++++ + SL A +KLQP + FLD +S+P
Sbjct: 77 SGVLEFVAEEGRAYLPQWMMQTLQLDVGDMIQIKSTSLELARMVKLQPQSAKFLD-ISDP 135
Query: 130 RAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNA---VSITETDCEVDFAPPL 186
RAVLE R F+ LT GD +N+ Y + VL+ KP VS+ ETD VDFA P+
Sbjct: 136 RAVLEKAFRNFATLTKGDVFSFEYNDDVYEMAVLDVKPETTKMGVSMIETDVSVDFAAPV 195
Query: 187 DYKEPDEK 194
Y EP+ +
Sbjct: 196 GYVEPERQ 203
>WB|WBGene00006733 [details] [associations]
symbol:ufd-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA
ATPase complex" evidence=IPI] [GO:0071712 "ER-associated misfolded
protein catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0034098 GO:GO:0071712 EMBL:Z69635
PIR:T21108 RefSeq:NP_502348.1 ProteinModelPortal:Q19584 SMR:Q19584
DIP:DIP-26847N IntAct:Q19584 MINT:MINT-1079679 STRING:Q19584
PaxDb:Q19584 PRIDE:Q19584 EnsemblMetazoa:F19B6.2a GeneID:3565860
KEGG:cel:CELE_F19B6.2 UCSC:F19B6.2b CTD:3565860 WormBase:F19B6.2a
eggNOG:COG5140 GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737
InParanoid:Q19584 KO:K14016 OMA:IDKAHLE NextBio:958135
ArrayExpress:Q19584 PANTHER:PTHR12555 Uniprot:Q19584
Length = 342
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 77/210 (36%), Positives = 116/210 (55%)
Query: 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNM 92
G KI++P SA + L + PM+F+L N++ + THCGV+EF+A EG LP WMM +
Sbjct: 47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQL 106
Query: 93 KLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIM 152
L + + +R+ + +L KAT+ KL+P + FL+ ++NP+AVLE LRK++CLT D I
Sbjct: 107 GLDDGDTIRIESATLPKATFAKLKPMSLEFLN-ITNPKAVLEVELRKYACLTKNDRIPTS 165
Query: 153 HNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPDEKL---VKRKVPFP-SQVEE 208
+ V++ KP+N+V I E D +DF PP Y E ++ V K P P +
Sbjct: 166 YAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFI 225
Query: 209 QSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
+ Q+ N F G G+ L K
Sbjct: 226 GAGQKAGGSGGTGQNATSVFGGAGRRLDGK 255
>UNIPROTKB|C9J6N9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 HOGENOM:HOG000212737 PANTHER:PTHR12555
EMBL:AC000068 HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01010945
ProteinModelPortal:C9J6N9 SMR:C9J6N9 STRING:C9J6N9
Ensembl:ENST00000494054 ArrayExpress:C9J6N9 Bgee:C9J6N9
Uniprot:C9J6N9
Length = 136
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 63/124 (50%), Positives = 84/124 (67%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 14 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 73
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 74 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 132
Query: 129 PRAV 132
P+AV
Sbjct: 133 PKAV 136
>UNIPROTKB|C9JNP9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01011883
ProteinModelPortal:C9JNP9 SMR:C9JNP9 STRING:C9JNP9
Ensembl:ENST00000447868 ArrayExpress:C9JNP9 Bgee:C9JNP9
Uniprot:C9JNP9
Length = 159
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 71/151 (47%), Positives = 91/151 (60%)
Query: 88 MMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGD 147
MM N+ L+E LV+V +V+L ATY K QP + FLD ++NP+AVLE LR F+CLTTGD
Sbjct: 2 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNPKAVLENALRNFACLTTGD 60
Query: 148 TIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPDEKLVKRKVPFPSQVE 207
I I +NE Y + V+ETKP AVSI E D VDF PL YKEP+ R+V Q E
Sbjct: 61 VIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE-----RQV----QHE 111
Query: 208 EQSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
E ++ + F+AF+G G L K
Sbjct: 112 ESTEGEADHSGYAGELGFRAFSGSGNRLDGK 142
>TAIR|locus:2130120 [details] [associations]
symbol:AT4G15420 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004854 InterPro:IPR015880 Pfam:PF03152 SMART:SM00355
EMBL:CP002687 GO:GO:0008270 GO:GO:0005622 GO:GO:0006511
InterPro:IPR007280 Pfam:PF04151 PANTHER:PTHR12555 EMBL:AF446353
EMBL:AY086035 EMBL:AY143927 EMBL:DQ778953 IPI:IPI00544100
RefSeq:NP_567465.1 UniGene:At.4344 UniGene:At.71880
ProteinModelPortal:Q8W1E7 SMR:Q8W1E7 STRING:Q8W1E7 PRIDE:Q8W1E7
EnsemblPlants:AT4G15420.1 GeneID:827213 KEGG:ath:AT4G15420
InParanoid:Q8W1E7 OMA:FHEPLQC ProtClustDB:PLN03086
Genevestigator:Q8W1E7 Uniprot:Q8W1E7
Length = 561
Score = 274 (101.5 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 75/217 (34%), Positives = 119/217 (54%)
Query: 33 GDKIIMPQSAFDRLAHT---EVGYPMMFELC---NLSSGKTTHCGVVEFTADEGFIYLPN 86
GDKI +P S F L+ + G P+ FEL + + KTTH GV+EFTA++G I LP
Sbjct: 91 GDKIKLPPSCFTELSDQGAFDKG-PLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPP 149
Query: 87 WMMDNM----KLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSC 142
+ N+ + LV + + L K +Y KLQP GF D L N +A+LE ILR+ +
Sbjct: 150 HVWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSD-LPNHKAILETILRQHAT 208
Query: 143 LTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDF-APPLDYKEPDEKLVKRKVP 201
L+ D +++ + + Y + VLE +P+ ++S+ ETD EVD +P + +P++ ++K
Sbjct: 209 LSLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQY 268
Query: 202 FPSQ---VEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
S+ VEE + V +EA + K G K++
Sbjct: 269 GKSESGTVEEGRYDYYKFVIDEATVE-KVMAGSVKVI 304
>UNIPROTKB|C9J7C8 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00945833
ProteinModelPortal:C9J7C8 SMR:C9J7C8 STRING:C9J7C8
Ensembl:ENST00000474226 ArrayExpress:C9J7C8 Bgee:C9J7C8
Uniprot:C9J7C8
Length = 69
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 55 MMFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMK 114
M+F+L N +S + THCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K
Sbjct: 1 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 60
Query: 115 LQPHTKGFL 123
QP + FL
Sbjct: 61 FQPQSPDFL 69
>ASPGD|ASPL0000066677 [details] [associations]
symbol:AN10877 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR004854
Pfam:PF03152 EMBL:BN001304 GO:GO:0006511 PANTHER:PTHR12555
EnsemblFungi:CADANIAT00000493 OMA:GIREFSA Uniprot:C8VCB5
Length = 756
Score = 146 (56.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 45/159 (28%), Positives = 82/159 (51%)
Query: 50 EVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNMKL-QE-----YELVRVT 103
++ +P+ F L N + + + G+ EF+A E I L + + + + QE +V V
Sbjct: 86 QLPHPLTFRLVNTQNSRVIYAGIREFSARENEIGLSASLREALDISQEGGDADAPIVTVH 145
Query: 104 NVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRK-FSCLTTGDTIMIMHNES---KYY 159
L K TY++L+P G+ + + +A+LE LR ++ LTTG+T+ + + K+
Sbjct: 146 AEQLPKGTYVRLRPLEAGY--DTDDWKALLERHLRSNYTTLTTGETLTVPRGQEESFKFL 203
Query: 160 IDVLETKPSNAVSITETDCEVDFAPPLDYKEPDEKLVKR 198
+D +E + + + +TD EVD L ++ E L KR
Sbjct: 204 VDKVEPQ-GEGICVVDTDLEVDIVA-LTEEQARETLHKR 240
Score = 53 (23.7 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 25 VAKPQHEP---GDKIIMPQSAFDRL 46
V PQ+ GD+II+PQSA ++L
Sbjct: 16 VTPPQYTQKLSGDRIILPQSALEQL 40
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 238 238 0.00091 113 3 11 22 0.44 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 592 (63 KB)
Total size of DFA: 198 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.75u 0.14s 23.89t Elapsed: 00:00:01
Total cpu time: 23.75u 0.14s 23.89t Elapsed: 00:00:01
Start: Fri May 10 10:27:05 2013 End: Fri May 10 10:27:06 2013