BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035839
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 139/227 (61%), Gaps = 14/227 (6%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
KEP+ P Q EE + + F+AF+G G L
Sbjct: 198 KEPER---------PVQHEESIEGEADHSGYAGEVGFRAFSGSGNRL 235
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 141/227 (62%), Gaps = 14/227 (6%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
KEP+ ++ Q EE ++ + F+AF+G G L
Sbjct: 198 KEPERQV---------QHEESTEGEADHSGYAGELGFRAFSGSGNRL 235
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 139/227 (61%), Gaps = 14/227 (6%)
Query: 13 FEKHYHCYSLSHVAKPQH----EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTT 68
F Y C+S+S +A P E G KIIMP SA D+L+ + YPM+F+L N +S + T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 69 HCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSN 128
HCGV+EF ADEG YLP+WMM N+ L+E LV+V +V+L ATY K QP + FLD ++N
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITN 137
Query: 129 PRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDY 188
P+AVLE LR F+CLTTGD I I +NE Y + V+ETKP AVSI E D VDF PL Y
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGY 197
Query: 189 KEPDEKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFKAFTGKGKLL 235
KEP+ P Q EE + + F+AF+G G L
Sbjct: 198 KEPER---------PVQHEESIEGEADHSGYAGEVGFRAFSGSGNRL 235
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 197 bits (500), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 128/180 (71%), Gaps = 3/180 (1%)
Query: 13 FEKHYHCYSLSHVAKPQH--EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHC 70
+E+ + + +S + K +H E G KI++P SA + L+ + YPM+FE+ N SGK +HC
Sbjct: 25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHC 84
Query: 71 GVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPR 130
GV+EF A+EG YLP WMM N++L+E E + + N +LAK T++K+QP T F+D +SNP+
Sbjct: 85 GVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFID-ISNPK 143
Query: 131 AVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKE 190
AVLE LRKF+ LT D IMI +N +KYY+ V+E KP+NA+SI E D VDFAPP+D KE
Sbjct: 144 AVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKE 203
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 122/184 (66%), Gaps = 4/184 (2%)
Query: 13 FEKHYHCYSLSHVAKPQH---EPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTH 69
F +Y C+S+S + + E G KIIMP SA D L V YPM+F+L N+ +++H
Sbjct: 17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSH 76
Query: 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129
GV+EF ADEG YLP+WMM+N+ L E +++ + +VSL AT+ K QPH+ FLD ++NP
Sbjct: 77 AGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLD-ITNP 135
Query: 130 RAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYK 189
+AVLE LR F+CLT GD I I +N+ Y + VLETKP NAVSI E D V+F P+ YK
Sbjct: 136 KAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYK 195
Query: 190 EPDE 193
+ E
Sbjct: 196 DHSE 199
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 13 FEKHYHCYSLSHVA---KPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTH 69
F+ Y CY ++ + +P G K+I+P SA ++L+ V YPM+F+ N ++ K TH
Sbjct: 32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTH 91
Query: 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129
GV+EF A+EG +YLP WMM + L+ +LVRV N +A+ +Y+KLQP + FLD +++
Sbjct: 92 GGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLD-ITDH 150
Query: 130 RAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNA---VSITETDCEVDFAPPL 186
RAVLE LR FS LT D I++N+ Y I V++ +P ++ VS+ ETD VDF PP+
Sbjct: 151 RAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPI 210
Query: 187 DYKEPDEK 194
Y+E +K
Sbjct: 211 GYEESLQK 218
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 118/193 (61%), Gaps = 8/193 (4%)
Query: 12 CFEKHYHCYSLS----HVAKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKT 67
FE+ + CY ++ + K G KI +P SA +L+ + YPM+F+L +G+
Sbjct: 20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRV 79
Query: 68 THCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELS 127
TH GV+EF A+EG +YLP WMM+ + +Q L+++++ + ++KL+P + FLD +S
Sbjct: 80 THGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLD-IS 138
Query: 128 NPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKP---SNAVSITETDCEVDFAP 184
+P+AVLE +LR FS LT D I I +N + I +LE KP S ++ + ETD DFAP
Sbjct: 139 DPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAP 198
Query: 185 PLDYKEPDEKLVK 197
P+ Y EPD K +K
Sbjct: 199 PVGYVEPDYKALK 211
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 116/210 (55%), Gaps = 5/210 (2%)
Query: 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNM 92
G KI++P SA + L + PM+F+L N++ + THCGV+EF+A EG LP WMM +
Sbjct: 47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQL 106
Query: 93 KLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIM 152
L + + +R+ + +L KAT+ KL+P + FL+ ++NP+AVLE LRK++CLT D I
Sbjct: 107 GLDDGDTIRIESATLPKATFAKLKPMSLEFLN-ITNPKAVLEVELRKYACLTKNDRIPTS 165
Query: 153 HNESKYYIDVLETKPSNAVSITETDCEVDFAPPLDYKEPDEKL---VKRKVPFP-SQVEE 208
+ V++ KP+N+V I E D +DF PP Y E ++ V K P P +
Sbjct: 166 YAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFI 225
Query: 209 QSKQQPQAVKEEANNKFKAFTGKGKLLGFK 238
+ Q+ N F G G+ L K
Sbjct: 226 GAGQKAGGSGGTGQNATSVFGGAGRRLDGK 255
>sp|Q3IGW8|SYQ_PSEHT Glutamine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=glnS PE=3 SV=1
Length = 552
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 84 LPNWMMDNMKL----QEYELVRV----TNVSLAKATYMKLQPHTKGFLDELSNP------ 129
L +W++DN+ L Q+ E R+ T +S K + + + H +G+ D+ P
Sbjct: 240 LYDWVLDNISLECHPQQIEFSRLNLEYTIMSKRKLSDLVVNNHVEGW-DDPRMPTIAGLR 298
Query: 130 -RAVLEAILRKFSCLTTGDT-----IMIMHNESKYYIDVLETKPS-----NAVSITETDC 178
R A +R+F CL G T + + E+ D+ E P + V I +
Sbjct: 299 RRGYTPASIREF-CLRIGVTKQENMVEMGMLEACIREDLNENAPRAMAVLDPVKIVIENY 357
Query: 179 EVDFAPPLDY-KEPD-EKLVKRKVPFPSQVEEQSKQQPQAVKEEANNKFK 226
+ D L P+ E++ +R VPF ++ + + KEEANNKFK
Sbjct: 358 DADKVETLSVANHPNKEEMGRRDVPFTREIYIERED----FKEEANNKFK 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,967,506
Number of Sequences: 539616
Number of extensions: 3631983
Number of successful extensions: 10048
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10024
Number of HSP's gapped (non-prelim): 21
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)