Query 035839
Match_columns 238
No_of_seqs 151 out of 324
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc1_A Ubiquitin fusion degrad 100.0 9.1E-80 3.1E-84 536.2 18.1 184 9-193 17-207 (208)
2 2yuj_A Ubiquitin fusion degrad 100.0 2E-75 6.9E-80 503.0 19.9 174 10-184 12-190 (190)
3 1cz4_A VCP-like ATPase; double 99.5 6.5E-13 2.2E-17 113.2 14.1 144 33-184 21-174 (185)
4 3qwz_A Transitional endoplasmi 99.5 9.1E-13 3.1E-17 114.7 14.7 145 33-183 39-188 (211)
5 3tiw_A Transitional endoplasmi 99.5 1.9E-12 6.7E-17 110.7 16.1 144 33-182 36-184 (187)
6 1wlf_A PEX1, peroxisome biogen 99.2 1.6E-10 5.4E-15 97.9 10.2 147 32-184 23-177 (179)
7 3cf2_A TER ATPase, transitiona 97.7 0.00022 7.5E-09 72.4 12.6 142 34-180 37-184 (806)
8 2jv2_A Putative uncharacterize 97.5 0.00035 1.2E-08 52.5 8.0 68 109-182 11-79 (83)
9 1ypw_A Transitional endoplasmi 97.3 0.0018 6.2E-08 65.1 12.3 137 34-175 37-178 (806)
10 3hu3_A Transitional endoplasmi 96.7 0.053 1.8E-06 51.6 16.1 144 33-182 36-184 (489)
11 1yfb_A Transition state regula 92.6 0.24 8.1E-06 34.6 5.4 40 77-120 19-58 (59)
12 1cr5_A SEC18P (residues 22 - 2 90.2 1.8 6.1E-05 36.3 9.4 89 78-166 54-154 (189)
13 2glw_A PHS018, 92AA long hypot 89.7 1.5 5.2E-05 32.9 7.8 68 78-153 13-84 (92)
14 1qcs_A N-ethylmaleimide sensit 89.1 1.8 6.1E-05 36.8 8.7 89 78-166 60-157 (211)
15 1cz4_A VCP-like ATPase; double 88.4 0.31 1.1E-05 40.9 3.4 82 79-176 21-103 (185)
16 3tiw_A Transitional endoplasmi 87.6 0.32 1.1E-05 41.1 3.0 71 78-154 35-105 (187)
17 2l66_A SSO7C4, transcriptional 87.6 0.51 1.7E-05 31.7 3.4 38 77-118 9-46 (53)
18 3qwz_A Transitional endoplasmi 84.2 0.54 1.9E-05 40.4 2.7 71 78-154 38-108 (211)
19 2glw_A PHS018, 92AA long hypot 83.7 4.1 0.00014 30.5 7.2 72 30-104 11-84 (92)
20 3cf2_A TER ATPase, transitiona 75.8 2.3 7.8E-05 43.2 4.5 70 78-153 35-104 (806)
21 3hu3_A Transitional endoplasmi 71.8 2.3 7.9E-05 40.3 3.2 71 78-154 35-105 (489)
22 1mvf_D MAZE protein, PEMI-like 68.7 7 0.00024 27.9 4.6 37 79-119 12-48 (82)
23 1ss6_A P47, NSFL1 cofactor P47 64.8 1.4 4.8E-05 33.9 0.1 14 224-237 81-94 (102)
24 2w1t_A Spovt, stage V sporulat 59.8 7.4 0.00025 32.7 3.6 40 77-119 11-50 (178)
25 1wlf_A PEX1, peroxisome biogen 57.3 4.6 0.00016 33.5 2.0 75 75-153 19-94 (179)
26 2oyn_A Hypothetical protein MJ 55.1 11 0.00036 30.8 3.8 29 70-105 105-133 (146)
27 1eik_A RNA polymerase subunit 54.7 16 0.00055 26.8 4.3 31 86-116 43-73 (77)
28 1a62_A RHO; transcription term 49.0 16 0.00054 28.8 3.8 31 79-110 76-106 (130)
29 1hmj_A RPB5, protein (subunit 48.4 16 0.00054 26.9 3.4 30 87-116 42-71 (78)
30 3ttz_A DNA gyrase subunit B; p 47.2 21 0.00071 29.9 4.5 48 107-154 134-181 (198)
31 3cgm_A SLYD, peptidyl-prolyl C 47.1 1.1E+02 0.0037 24.5 9.8 92 73-187 27-122 (158)
32 2kfw_A FKBP-type peptidyl-prol 46.4 25 0.00084 29.5 4.8 91 74-187 33-126 (196)
33 3o27_A Putative uncharacterize 45.3 20 0.00067 25.8 3.4 26 79-104 24-49 (68)
34 2ki8_A Tungsten formylmethanof 45.1 15 0.00051 29.1 3.1 28 78-105 51-78 (146)
35 2k8i_A SLYD, peptidyl-prolyl C 44.6 78 0.0027 25.7 7.5 92 73-187 32-126 (171)
36 1ypw_A Transitional endoplasmi 43.3 15 0.00052 36.7 3.5 87 50-154 19-105 (806)
37 2k52_A Uncharacterized protein 42.2 46 0.0016 23.1 5.1 54 92-152 1-55 (80)
38 2ylm_A Ubiquitin carboxyl-term 40.4 59 0.002 31.0 7.0 84 56-154 134-217 (530)
39 2fhd_A RAD9 homolog, DNA repai 40.3 8.6 0.00029 31.7 1.0 31 84-116 54-84 (153)
40 2ln7_A LPXTG-SITE transpeptida 38.4 36 0.0012 26.8 4.4 24 142-165 75-98 (147)
41 1yle_A Arginine N-succinyltran 37.8 32 0.0011 31.6 4.5 47 56-103 291-338 (342)
42 4duh_A DNA gyrase subunit B; s 36.5 36 0.0012 28.9 4.4 48 106-154 160-208 (220)
43 3dlm_A Histone-lysine N-methyl 36.3 1.2E+02 0.0042 26.0 7.6 59 119-177 128-193 (213)
44 2z0t_A Putative uncharacterize 36.2 17 0.00057 28.1 2.0 39 126-166 15-55 (109)
45 2loj_A Putative cytoplasmic pr 35.6 47 0.0016 23.5 4.0 22 143-164 34-55 (63)
46 4ayb_H DNA-directed RNA polyme 34.9 48 0.0016 24.4 4.2 31 86-116 49-79 (84)
47 4dt4_A FKBP-type 16 kDa peptid 33.4 1.2E+02 0.004 24.7 6.9 91 73-186 55-149 (169)
48 2kr7_A FKBP-type peptidyl-prol 32.4 1.1E+02 0.0039 24.0 6.5 91 73-186 37-130 (151)
49 3k3s_A Altronate hydrolase; st 32.3 13 0.00046 28.7 0.8 32 84-115 17-48 (105)
50 1t2w_A Sortase; transpeptidase 31.4 63 0.0022 25.1 4.8 24 142-165 74-97 (145)
51 1fr3_A MOP, molybdate/tungstat 31.0 53 0.0018 21.3 3.7 22 83-104 37-58 (67)
52 4dni_A Fusion protein of RNA-e 30.9 40 0.0014 29.6 3.8 56 119-177 190-257 (257)
53 2jra_A Protein RPA2121; domain 30.2 56 0.0019 23.4 3.7 22 143-164 38-59 (67)
54 4emv_A DNA topoisomerase IV, B 29.3 51 0.0017 28.2 4.1 47 107-154 168-214 (226)
55 3idw_A Actin cytoskeleton-regu 27.5 3.5 0.00012 30.1 -3.0 16 87-102 42-57 (72)
56 3fn5_A Sortase A; sortase-fold 24.5 81 0.0028 26.1 4.4 24 142-165 98-121 (187)
57 1r94_A Protein YFHF; tetrameri 23.4 37 0.0013 25.8 2.0 41 32-72 58-103 (118)
58 3m7n_A Putative uncharacterize 23.1 43 0.0015 27.3 2.4 93 53-154 19-123 (179)
59 1dm9_A Hypothetical 15.5 KD pr 20.7 95 0.0033 24.1 3.9 24 142-165 48-71 (133)
60 3fv5_A DNA topoisomerase 4 sub 20.4 1E+02 0.0035 25.4 4.3 47 107-154 145-191 (201)
61 2kw8_A LPXTG-SITE transpeptida 20.1 1.2E+02 0.004 24.0 4.4 25 142-166 88-112 (158)
62 4a3p_A Ubiquitin carboxyl-term 20.0 3.7E+02 0.013 22.2 9.9 110 27-155 77-209 (217)
No 1
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-80 Score=536.20 Aligned_cols=184 Identities=40% Similarity=0.777 Sum_probs=179.9
Q ss_pred ccccceeeEEEeeeecc----cCCCCCCCCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEeeeEeCCCcEec
Q 035839 9 YYTCFEKHYHCYSLSHV----AKPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYL 84 (238)
Q Consensus 9 ~~~~f~~~~~~y~~s~~----~~~~~~~gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlEF~A~EG~i~l 84 (238)
..++|+++|||||++|+ +|+++++||||+||||||++|++++++|||+|+|+|..++++||||||||+|+||+|||
T Consensus 17 ~~~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF~A~EG~v~l 96 (208)
T 1zc1_A 17 MPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYL 96 (208)
T ss_dssp CCEEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEECCSSCEEEE
T ss_pred ccccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEEEcCCCeEEc
Confidence 36789999999999996 78899999999999999999999999999999999999999999999999999999999
Q ss_pred cHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEECCEEEEEEEEE
Q 035839 85 PNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLE 164 (238)
Q Consensus 85 P~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~~~~y~l~V~e 164 (238)
|+|||++|++++||.|+|++++||||||||||||+++|++ |+|||||||++||||+|||+||+|.|+|+++.|+|+|+|
T Consensus 97 P~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fld-i~npKavLE~~LRnfstLT~Gd~I~i~~~~~~y~l~V~e 175 (208)
T 1zc1_A 97 PQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLD-ISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILE 175 (208)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHT-SSCHHHHHHHHHHHCSCEESSSEEEEEETTEEEEEEEEE
T ss_pred CHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECcccccc-ccCHHHHHHHHhhcCccccCCCEEEEEeCCEEEEEEEEE
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC---ceEEEeCceEEEecCCCCCCCCch
Q 035839 165 TKPSN---AVSITETDCEVDFAPPLDYKEPDE 193 (238)
Q Consensus 165 ~kP~~---aVsIidTDl~VDf~ppl~y~e~~~ 193 (238)
+||++ |||||||||+|||+||+||+||++
T Consensus 176 ~kP~~~~~aV~IidTDleVDf~~p~~y~ep~~ 207 (208)
T 1zc1_A 176 VKPESSSKSICVIETDLVTDFAPPVGYVEPDY 207 (208)
T ss_dssp EECSSTTCEECCSSSCSEEEECCCCCCCCCCC
T ss_pred EcCCCCCceEEEEeCceEEEecCCCCCcCCCC
Confidence 99997 999999999999999999999986
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2e-75 Score=503.03 Aligned_cols=174 Identities=53% Similarity=0.907 Sum_probs=169.6
Q ss_pred ccc-ceeeEEEeeeeccc----CCCCCCCCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEeeeEeCCCcEec
Q 035839 10 YTC-FEKHYHCYSLSHVA----KPQHEPGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYL 84 (238)
Q Consensus 10 ~~~-f~~~~~~y~~s~~~----~~~~~~gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlEF~A~EG~i~l 84 (238)
.+. |+++|||||+||+. |+++++||||+||||||++|++++++|||+|+|+|..++|+||||||||+|+||+|||
T Consensus 12 ~~~~f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlEFsA~EG~i~l 91 (190)
T 2yuj_A 12 FQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYL 91 (190)
T ss_dssp CSSSCEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEECCCBTTBEEC
T ss_pred CCccccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEEEecCCCeEEe
Confidence 344 99999999999974 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEECCEEEEEEEEE
Q 035839 85 PNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLE 164 (238)
Q Consensus 85 P~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~~~~y~l~V~e 164 (238)
|+|||++|++++||.|+|++++||||||||||||+++|++ |+|||||||++||||+|||+||+|.|+|+++.|+|+|+|
T Consensus 92 P~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~-i~npKavLE~~LrnfstLT~Gd~I~I~~~~~~y~l~V~e 170 (190)
T 2yuj_A 92 PHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLD-ITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVME 170 (190)
T ss_dssp CSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHH-SSCHHHHHHHHHTTCCEECTTCEEEEESSSCEEEEEEEE
T ss_pred CHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccc-cccHHHHHHHHHhcCcccccCCEEEEEeCCEEEEEEEEE
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecCCCceEEEeCceEEEecC
Q 035839 165 TKPSNAVSITETDCEVDFAP 184 (238)
Q Consensus 165 ~kP~~aVsIidTDl~VDf~p 184 (238)
+||++|||||||||+|||+|
T Consensus 171 ~kP~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 171 TKPDKAVSIIECDMNVDFDA 190 (190)
T ss_dssp ESSSSSEECSSCCCEEEECC
T ss_pred EcCCCeEEEEeCCEEEEecC
Confidence 99999999999999999986
No 3
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.47 E-value=6.5e-13 Score=113.16 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=119.3
Q ss_pred CCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEee-eEeC--CCcEeccHhHHhhcCCCCCCeEEEEEeeeCC
Q 035839 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVE-FTAD--EGFIYLPNWMMDNMKLQEYELVRVTNVSLAK 109 (238)
Q Consensus 33 gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlE-F~A~--EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPk 109 (238)
-+.+.|+|++|++|.-..-. +.+|+ .+|.|+|-|.. +..+ .|.|-|..|+.+|+++..||.|.|+-+.++.
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD---~V~I~---G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~ 94 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGD---VVEIE---KVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEI 94 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTC---EEEEE---SSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCB
T ss_pred CCEEEECHHHHHHcCCCCCC---EEEEE---cCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCC
Confidence 35699999999877532222 46665 45789999986 3333 6899999999999999999999999999999
Q ss_pred ceeEEEeecC---ccccccCCChHHHHHHhhccCcccccCCEEEEEE---CCE-EEEEEEEEecCCCceEEEeCceEEEe
Q 035839 110 ATYMKLQPHT---KGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMH---NES-KYYIDVLETKPSNAVSITETDCEVDF 182 (238)
Q Consensus 110 gt~vkLqP~s---~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~---~~~-~y~l~V~e~kP~~aVsIidTDl~VDf 182 (238)
|+.|.|.|.+ ..+ ....|....|...|+++. |++||+|.+.+ .++ ...|.|++++|+.++++|..|-+|++
T Consensus 95 A~~V~l~P~~~~~~~~-~~~~~~~~~l~~~l~~rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i 172 (185)
T 1cz4_A 95 AKKVTLAPIIRKDQRL-KFGEGIEEYVQRALIRRP-MLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEI 172 (185)
T ss_dssp CSEEEEEEECSTTCCS-CCCSSHHHHHHHHHTTCE-ECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEE
T ss_pred ccEEEEeccccccccc-ccccchHHHHHHHHCCCc-ccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEE
Confidence 9999999985 443 313688899999999974 99999999986 667 89999999999987889989999988
Q ss_pred cC
Q 035839 183 AP 184 (238)
Q Consensus 183 ~p 184 (238)
..
T Consensus 173 ~~ 174 (185)
T 1cz4_A 173 RE 174 (185)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 4
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.47 E-value=9.1e-13 Score=114.74 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=121.0
Q ss_pred CCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEeee-EeCCCcEeccHhHHhhcCCCCCCeEEEEEe-eeCCc
Q 035839 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEF-TADEGFIYLPNWMMDNMKLQEYELVRVTNV-SLAKA 110 (238)
Q Consensus 33 gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlEF-~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~-~LPkg 110 (238)
.+.+.|+|+++++|.-..-. +.+|+. ...+.|+|-|+.. ..++|.|.|..|+.+||++..||.|.|+-+ .++.|
T Consensus 39 rgivrl~p~~m~~Lgl~~GD---~V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 114 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQLFRGD---TVLLKG-XKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 114 (211)
T ss_dssp TTEEEECHHHHHHHTCCBTC---EEEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CcEEEECHHHHHHcCCCCCC---EEEEeC-CCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 77899999999987633222 577875 2344899999864 457899999999999999999999999999 89999
Q ss_pred eeEEEeecCccccccCC-C-hHHHHHHhhc-cCcccccCCEEEEEECCEEEEEEEEEecCCCceEEEeCceEEEec
Q 035839 111 TYMKLQPHTKGFLDELS-N-PRAVLEAILR-KFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDFA 183 (238)
Q Consensus 111 t~vkLqP~s~~F~~~i~-n-pKavLE~~Lr-nys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf~ 183 (238)
+.|.|.|.+..+-. |. | ....|...|. +|-.+++||+|.|.+.++..+|.|++++|+ .+|+|..|-+|++.
T Consensus 115 ~~V~LaP~~~~i~~-i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-g~viV~~~T~I~~~ 188 (211)
T 3qwz_A 115 KRIHVLPIDDTVEG-ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-PYCIVAPDTVIHCE 188 (211)
T ss_dssp SEEEEEEBGGGCTT-CCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-SEEEECTTCEEECC
T ss_pred eEEEEeccCcchhc-cCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-CCEEECCCcEEEEc
Confidence 99999998655433 43 3 4677888888 499999999999999999999999999997 57889888888884
No 5
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.46 E-value=1.9e-12 Score=110.73 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=115.7
Q ss_pred CCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEeee-EeCCCcEeccHhHHhhcCCCCCCeEEEEEe-eeCCc
Q 035839 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEF-TADEGFIYLPNWMMDNMKLQEYELVRVTNV-SLAKA 110 (238)
Q Consensus 33 gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlEF-~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~-~LPkg 110 (238)
.+.+.|+|+++++|.-..-. +.+|+. ...+.|+|-|+.- ..++|.|.|..|+.+||++..||.|.|+-+ .++.|
T Consensus 36 ~givrl~p~~m~~Lgl~~GD---~V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 111 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQLFRGD---TVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (187)
T ss_dssp TTEEEECHHHHHHHTCCTTC---EEEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEEC
T ss_pred CcEEEECHHHHHHcCCCCCC---EEEEEC-CCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 67899999999988633222 577774 2344899999875 357899999999999999999999999999 89999
Q ss_pred eeEEEeecCccccccCC-C-hHHHHHHhhc-cCcccccCCEEEEEECCEEEEEEEEEecCCCceEEEeCceEEEe
Q 035839 111 TYMKLQPHTKGFLDELS-N-PRAVLEAILR-KFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDF 182 (238)
Q Consensus 111 t~vkLqP~s~~F~~~i~-n-pKavLE~~Lr-nys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf 182 (238)
+.|.|.|.+...-. ++ | ....|...|. +|-.+++||+|.|.+.++.++|.|++++|+ .+|+|..|-+|..
T Consensus 112 ~~V~LaP~~~~i~~-i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 112 KRIHVLPIDDTVEG-ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-PYCIVAPDTVIHC 184 (187)
T ss_dssp SEEEEEECCCC------CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-SEEECCTTCEEEC
T ss_pred eEEEEeccccchhh-ccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-CCEEECCCcEEEe
Confidence 99999998644422 43 3 4677888888 499999999999999999999999999998 5677766666654
No 6
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.15 E-value=1.6e-10 Score=97.95 Aligned_cols=147 Identities=13% Similarity=0.132 Sum_probs=120.5
Q ss_pred CCCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEeeeEe----CCCcEeccHhHHhhcCCCCCCeEEEEE-ee
Q 035839 32 PGDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVEFTA----DEGFIYLPNWMMDNMKLQEYELVRVTN-VS 106 (238)
Q Consensus 32 ~gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlEF~A----~EG~i~lP~Wmm~~L~l~~gd~V~v~~-~~ 106 (238)
..+-+-||+++++.|.- ..=-.-+|+- ..++.++|...+.. ..+.|-|..-+.+|||+..||.|.|+- ..
T Consensus 23 ~~~~vrL~~~~~~~L~~---~~gd~VeI~g--~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~ 97 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHL---LQNQAIEVAS--DHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSH 97 (179)
T ss_dssp SSSCEEECHHHHHHTTC---CTTCCEEEES--SSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSC
T ss_pred CCcEEECCHHHHHHcCC---CCCcEEEEEe--CCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCC
Confidence 45678999999998752 2223667764 34577888887754 467999999999999999999999998 79
Q ss_pred eCCceeEEEeecCccccccC-CChHHHHHHhhc-cCcccccCCEEEEEECC-EEEEEEEEEecCCCceEEEeCceEEEec
Q 035839 107 LAKATYMKLQPHTKGFLDEL-SNPRAVLEAILR-KFSCLTTGDTIMIMHNE-SKYYIDVLETKPSNAVSITETDCEVDFA 183 (238)
Q Consensus 107 LPkgt~vkLqP~s~~F~~~i-~npKavLE~~Lr-nys~LT~Gd~I~I~~~~-~~y~l~V~e~kP~~aVsIidTDl~VDf~ 183 (238)
.+.|+.|.|.|.+.+-++ | .+.-..||..|. ++..+++||+|.++..+ ....|.|.++.|...+++|..|-+|.++
T Consensus 98 ~~~A~~V~laP~~~dD~e-i~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~ 176 (179)
T 1wlf_A 98 VVSCQQVEVEPLSADDWE-ILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQ 176 (179)
T ss_dssp CEECSEEEEEESSHHHHH-HHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEEC
T ss_pred CccceEEEEEcCCcCCeE-EehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEe
Confidence 999999999999866455 4 455567888888 58899999999999766 8899999999997778899999999886
Q ss_pred C
Q 035839 184 P 184 (238)
Q Consensus 184 p 184 (238)
|
T Consensus 177 p 177 (179)
T 1wlf_A 177 P 177 (179)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.74 E-value=0.00022 Score=72.41 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=100.4
Q ss_pred CeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEee-eEeCCCcEeccHhHHhhcCCCCCCeEEEEEe-eeCCce
Q 035839 34 DKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVE-FTADEGFIYLPNWMMDNMKLQEYELVRVTNV-SLAKAT 111 (238)
Q Consensus 34 dKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlE-F~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~-~LPkgt 111 (238)
.-|.|.|..+++|.-..=. +-+|+... .+.+.|-++. =..+.|.|.|..-+.+|+++..||.|.|+-+ .++.++
T Consensus 37 ~~~~~~~~~~~~l~~~~gd---~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~ 112 (806)
T 3cf2_A 37 SVVSLSQPKMDELQLFRGD---TVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp TEEEECHHHHHHTTCCSSC---EEEEECGG-GCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCS
T ss_pred CEEEECHHHHHHcCCCCCC---EEEEEcCC-CceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCC
Confidence 4588999999877532112 34554322 2233344332 1246799999999999999999999999988 799999
Q ss_pred eEEEeecCccccccCC--ChHHHHHHhhc-cCcccccCCEEEEEECCEEEEEEEEEecCCCceEEE-eCceEE
Q 035839 112 YMKLQPHTKGFLDELS--NPRAVLEAILR-KFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSIT-ETDCEV 180 (238)
Q Consensus 112 ~vkLqP~s~~F~~~i~--npKavLE~~Lr-nys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIi-dTDl~V 180 (238)
.|.|.|.+...-. +. .....|...|. .+-.+++||+|.+.+.+....|.|++++|...+.|- +|.+.+
T Consensus 113 ~v~l~p~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~~~T~i~~ 184 (806)
T 3cf2_A 113 RIHVLPIDDTVEG-ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 184 (806)
T ss_dssp BEEEEEBTTTSTT-CCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECCTTSBCCB
T ss_pred EEEEeccccchhc-cchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEECCCcEEEE
Confidence 9999997533222 22 23455555555 467899999999999999999999999998755433 344443
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.53 E-value=0.00035 Score=52.51 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=54.9
Q ss_pred CceeEEEeecCccccccC-CChHHHHHHhhccCcccccCCEEEEEECCEEEEEEEEEecCCCceEEEeCceEEEe
Q 035839 109 KATYMKLQPHTKGFLDEL-SNPRAVLEAILRKFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDF 182 (238)
Q Consensus 109 kgt~vkLqP~s~~F~~~i-~npKavLE~~Lrnys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf 182 (238)
-|+.|.|.|.+. ++ + .|.-..|-+.|+++. +++||+|.|..-++...|.|++++|. +++|.-|-++++
T Consensus 11 ~A~kVvLAP~~~--i~-~~~~~~~~lk~~L~grP-V~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i 79 (83)
T 2jv2_A 11 IMSELKLKPLPK--VE-LPPDFVDVIRIKLQGKT-VRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITL 79 (83)
T ss_dssp CCCEEEEEESSS--CC-CCHHHHHHHHHHHTTSE-ECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEE
T ss_pred EEEEEEEcCCCc--ee-cCccHHHHHHHHHCCCC-ccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEE
Confidence 478899999842 33 4 455677778888855 99999999998889999999999997 778877777776
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=0.0018 Score=65.12 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=98.6
Q ss_pred CeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEee-eEeCCCcEeccHhHHhhcCCCCCCeEEEEEe-eeCCce
Q 035839 34 DKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVE-FTADEGFIYLPNWMMDNMKLQEYELVRVTNV-SLAKAT 111 (238)
Q Consensus 34 dKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlE-F~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~-~LPkgt 111 (238)
+.+-|.|.++++|.-..-. +-+|+... .+.|.|-|+- -..+.|.|-|...+.+|+++..||.|.|+-+ ..+.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (806)
T 1ypw_A 37 SVVSLSQPKMDELQLFRGD---TVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp SCEEECHHHHHHHTCCTTC---EEEEEETT-TEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCS
T ss_pred CEEEECHHHHHHcCCCCCC---EEEEecCc-cCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCc
Confidence 8999999999877533211 44665432 2256676653 2346789999999999999999999999999 799999
Q ss_pred eEEEeecCccccccCC-C-hHHHHHHhhc-cCcccccCCEEEEEECCEEEEEEEEEecCCCceEEEe
Q 035839 112 YMKLQPHTKGFLDELS-N-PRAVLEAILR-KFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITE 175 (238)
Q Consensus 112 ~vkLqP~s~~F~~~i~-n-pKavLE~~Lr-nys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIid 175 (238)
.|.|.|-+...-. +. + ....|...|. .+-.+++||++.+......+.|.|.++.|...+.|..
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~ 178 (806)
T 1ypw_A 113 RIHVLPIDDTVEG-ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178 (806)
T ss_dssp EEEEEECTTTSSS-CCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCCS
T ss_pred EEEEeCCccchhh-cccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceecC
Confidence 9999997532211 21 1 1122323333 2456999999999888889999999999987666553
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.70 E-value=0.053 Score=51.57 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=103.4
Q ss_pred CCeeeecHHHHHHHHhCCCCCceEEEEEeCCCCCeEEEEEee-eEeCCCcEeccHhHHhhcCCCCCCeEEEEEe-eeCCc
Q 035839 33 GDKIIMPQSAFDRLAHTEVGYPMMFELCNLSSGKTTHCGVVE-FTADEGFIYLPNWMMDNMKLQEYELVRVTNV-SLAKA 110 (238)
Q Consensus 33 gdKIiLP~SaL~~L~~~~i~~Pm~F~i~n~~~~~~th~GVlE-F~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~-~LPkg 110 (238)
.+.|.|.|+++++|. +..==+=+|+. ...+.|.|.|+- -.-+.|.|-|..-+.+|+|+.-||.|+|+-+ .+|.|
T Consensus 36 ~~~~~~~~~~~~~l~---~~~gd~v~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a 111 (489)
T 3hu3_A 36 NSVVSLSQPKMDELQ---LFRGDTVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (489)
T ss_dssp TTEEEECHHHHHHHT---CCTTCEEEEEC-STTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEec-CccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCcc
Confidence 389999999999886 22222344543 333578899862 2235789999999999999999999999999 99999
Q ss_pred eeEEEeecCccccccCCC-hHHHHHHhhc--cCcccccCCEEEEEECCEEEEEEEEEecCCCceEEEeCceEEEe
Q 035839 111 TYMKLQPHTKGFLDELSN-PRAVLEAILR--KFSCLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETDCEVDF 182 (238)
Q Consensus 111 t~vkLqP~s~~F~~~i~n-pKavLE~~Lr--nys~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf 182 (238)
+.|.|.|-+.+--. +.. --..++.-+. .+-.+..||.+.+....+.+++.+++.+|... +++..+-.+.+
T Consensus 112 ~~v~~~~~~~av~a-~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~ 184 (489)
T 3hu3_A 112 KRIHVLPIDDTVEG-ITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPY-CIVAPDTVIHC 184 (489)
T ss_dssp SEEEEEEBGGGSSS-CCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSE-EEECTTCEEEC
T ss_pred CEEEEcCCCccccc-ccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCc-eEEcCCeEEEE
Confidence 99999997654322 322 1122333322 36678889999999999999999999998644 34444444444
No 11
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=92.58 E-value=0.24 Score=34.59 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=32.9
Q ss_pred eCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCc
Q 035839 77 ADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTK 120 (238)
Q Consensus 77 A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~ 120 (238)
...|.|.+|.=+.+.|+|++||.|.+... +.-+.|+|...
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~----~~~IiL~p~~p 58 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVD----DEKIILKKYKP 58 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEE----TTEEEEEECCC
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEE----CCEEEEEECCC
Confidence 36799999999999999999999988763 23588888643
No 12
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=90.21 E-value=1.8 Score=36.28 Aligned_cols=89 Identities=8% Similarity=0.078 Sum_probs=62.1
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeC-Cc---eeEEEeecCcccccc------CCChHHHHHHhhccCc--cccc
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLA-KA---TYMKLQPHTKGFLDE------LSNPRAVLEAILRKFS--CLTT 145 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LP-kg---t~vkLqP~s~~F~~~------i~npKavLE~~Lrnys--~LT~ 145 (238)
+.|+|.|-.-.-+-+++.-|+.|.|+.-..| .+ .++---=.+.+|+.. -=|-..+-..-+++|. .||.
T Consensus 54 ~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~ 133 (189)
T 1cr5_A 54 PPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSP 133 (189)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECT
T ss_pred CCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCC
Confidence 7899999998888899999999999977442 12 233222233344420 1244444455555666 5999
Q ss_pred CCEEEEEECCEEEEEEEEEec
Q 035839 146 GDTIMIMHNESKYYIDVLETK 166 (238)
Q Consensus 146 Gd~I~I~~~~~~y~l~V~e~k 166 (238)
|..+.+.|++..|.|.|.++.
T Consensus 134 gQ~l~f~~~g~~l~l~V~~i~ 154 (189)
T 1cr5_A 134 TQYLIMEFQGHFFDLKIRNVQ 154 (189)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 999999999999999998764
No 13
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=89.74 E-value=1.5 Score=32.89 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCce----eEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEE
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKAT----YMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMH 153 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt----~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~ 153 (238)
..|.|-+|..+.+.|++.+||.|.++.++...|. +...+- +.--+ |.=||.+ |..--|..||.+.+.-
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v--~~kGq-itIPkei-----R~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARV--GEQGS-VIIPKAL-----RDVIGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEEC--CGGGE-EECCHHH-----HHHHTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEE--CcCce-EECcHHH-----HHHcCCCCCCEEEEEE
Confidence 5799999999999999999999999876666665 111111 11112 4457765 4445789999998864
No 14
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=89.08 E-value=1.8 Score=36.82 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCc-eeEEEeecCcccccc-C-----CChHHHHHHhhccCc--ccccCCE
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKA-TYMKLQPHTKGFLDE-L-----SNPRAVLEAILRKFS--CLTTGDT 148 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkg-t~vkLqP~s~~F~~~-i-----~npKavLE~~Lrnys--~LT~Gd~ 148 (238)
+.|+|.|-.-.-+.+++.-|+.|.|+.-..+.. .++-.-=.+.+|+.. - =|-..+-..-+++|. .||.|..
T Consensus 60 ~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~ 139 (211)
T 1qcs_A 60 VPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQ 139 (211)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCE
T ss_pred CCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCE
Confidence 789999999999999999999999986644422 223222233445420 1 133444444445666 5999999
Q ss_pred EEEEECCEEEEEEEEEec
Q 035839 149 IMIMHNESKYYIDVLETK 166 (238)
Q Consensus 149 I~I~~~~~~y~l~V~e~k 166 (238)
|.+.|++..|.|.|.+++
T Consensus 140 l~f~~~g~~l~l~V~~v~ 157 (211)
T 1qcs_A 140 LVFSFNDKLFGLLVKDIE 157 (211)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEeEEE
Confidence 999999999999998753
No 15
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=88.41 E-value=0.31 Score=40.86 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecC-ccccccCCChHHHHHHhhccCcccccCCEEEEEECCEE
Q 035839 79 EGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHT-KGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHNESK 157 (238)
Q Consensus 79 EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s-~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~~~~ 157 (238)
.|.|+|+.=.|+.|+|.+||.|.|+. .+.+.++.-|.. .+. .+=.--|-..+|+-.-+..||.+.|.-
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD~V~I~G---~r~t~a~v~~~~~ed~----~~g~Irid~~~R~N~gv~iGD~V~V~~---- 89 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGDVVEIEK---VRKTVGRVYRARPEDE----NKGIVRIDSVMRNNCGASIGDKVKVRK---- 89 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTCEEEEES---SSEEEEEEEECSSTTT----TTSEEECCHHHHHHHTCCTTCEEEEEE----
T ss_pred CCEEEECHHHHHHcCCCCCCEEEEEc---CCeEEEEEEEcCcCcC----CCCEEEeCHHHHhccCCCCCCEEEEEE----
Confidence 47799999999999999999999974 567888888863 221 111111234566667789999999964
Q ss_pred EEEEEEEecCCCceEEEeC
Q 035839 158 YYIDVLETKPSNAVSITET 176 (238)
Q Consensus 158 y~l~V~e~kP~~aVsIidT 176 (238)
.+++++.-|.+--+
T Consensus 90 -----~~~~~A~~V~l~P~ 103 (185)
T 1cz4_A 90 -----VRTEIAKKVTLAPI 103 (185)
T ss_dssp -----ECCCBCSEEEEEEE
T ss_pred -----CCCCCccEEEEecc
Confidence 25667776666533
No 16
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=87.59 E-value=0.32 Score=41.09 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
|.|.+.|+.-.|+.|+|.+||.|.|+..+ -+-|.++..|.. + ...-+--|-..+|+-..+..||.+.|.--
T Consensus 35 D~givrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~----~-~~~g~Irid~~~R~N~gV~iGD~V~V~~~ 105 (187)
T 3tiw_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD----T-CSDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (187)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT----T-SCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEECCC-CCeEEEEEEECC----C-CCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence 47899999999999999999999999742 124777777753 2 22212223456677778999999999754
No 17
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=87.57 E-value=0.51 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=30.9
Q ss_pred eCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeec
Q 035839 77 ADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPH 118 (238)
Q Consensus 77 A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~ 118 (238)
...|.|.+|.=+.+.|++++||.|.+... .+. +.|+|.
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~---~~~-ivl~p~ 46 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD---ESE-GVVKIQ 46 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC---SSS-CCEEEE
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE---CCE-EEEEEC
Confidence 36799999999999999999999988753 232 667775
No 18
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=84.16 E-value=0.54 Score=40.42 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
|.|.+.|+.-.|+.|+|.+||.|.|+..+ -+-|.++..|.. + ...-+--|-..+|+-..+..||.+.|.--
T Consensus 38 Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~-~----~~~g~Irid~~~R~N~gV~iGD~V~V~~~ 108 (211)
T 3qwz_A 38 DNSVVSLSQPKMDELQLFRGDTVLLKGXK-RREAVCIVLSDD-T----CSDEKIRMNRVVRNNLRVRLGDVISIQPC 108 (211)
T ss_dssp CTTEEEECHHHHHHHTCCBTCEEEEECST-TCEEEEEEEECT-T----SCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEeCCC-CCcEEEEEEeCC-C----CCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence 47899999999999999999999999742 224777777753 1 11112223456677778999999999644
No 19
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=83.66 E-value=4.1 Score=30.48 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCCCCeeeecHHHHHHHHhCCCCCceEEE-EEeCCCCCeEEEEEeeeE-eCCCcEeccHhHHhhcCCCCCCeEEEEE
Q 035839 30 HEPGDKIIMPQSAFDRLAHTEVGYPMMFE-LCNLSSGKTTHCGVVEFT-ADEGFIYLPNWMMDNMKLQEYELVRVTN 104 (238)
Q Consensus 30 ~~~gdKIiLP~SaL~~L~~~~i~~Pm~F~-i~n~~~~~~th~GVlEF~-A~EG~i~lP~Wmm~~L~l~~gd~V~v~~ 104 (238)
+...++|.+|.++-+.|.-..-. -+.++ +.-....+ ..+..... ...|.+.+|.-+.+.|++++||.|.+..
T Consensus 11 v~~~gqvtiP~~iR~~LgI~~GD-~V~v~~i~~~~g~~--~~~~~~~~v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 11 VHRIGRIIIPAGTRKFYGIEQGD-FVEIKIVKYEGEEP--KEGTFTARVGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp CBGGGEEECCHHHHHHHTCCTTC-EEEEEEEEEETTEE--EEEEEEEECCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred EeCCCEEEecHHHHHHcCCCCCC-EEEEEEEEecCCcc--ceeEEEEEECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 45678999999999877522112 22232 21111111 22222232 5789999999999999999999988764
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.81 E-value=2.3 Score=43.18 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEE
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMH 153 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~ 153 (238)
+.+.|+|..-.|+.|+|.+||.|.|+..+ .+.+.+.+...+ + +.+-..-|-..+|.-..+..||.|.|.-
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~i~g~~---~~~~~~~~~~~~--~-~~~~~i~~~~~~r~n~~v~~gd~V~v~~ 104 (806)
T 3cf2_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--T-CSDEKIRMNRVVRNNLRVRLGDVISIQP 104 (806)
T ss_dssp CTTEEEECHHHHHHTTCCSSCEEEEECGG---GCBCCEEEEECT--T-SBTTBCEECHHHHHTTTCCTTCEEEEEE
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEcCC---CceEEEEEcCCC--C-CCCCEEEeCHHHHHhcCCCCCCEEEEEE
Confidence 56789999999999999999999998654 233222222111 1 2222222335667777889999999964
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.78 E-value=2.3 Score=40.26 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
+.|.|+|..-.|+.|++.+||.|.|+..+ .+.+.+...|-.. +..-...+-..+|+-..+..||.|.|.--
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~~~g~~-~~~~~~~~~~~~~-----~~~~~i~~~~~~r~n~~~~~gd~v~v~~~ 105 (489)
T 3hu3_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDDT-----CSDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (489)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECTT-----SCTTEEECCHHHHHHTTCCTTCEEEEEEC
T ss_pred cCCEEEECHHHHHHcCCCCCCEEEEecCc-cCcEEEEEeeCCC-----CCCCEEEecHHHHhhcCCCCCCEEEEEEC
Confidence 34899999999999999999999999642 1346666666421 21112224567787788999999999643
No 22
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=68.70 E-value=7 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecC
Q 035839 79 EGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHT 119 (238)
Q Consensus 79 EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s 119 (238)
.+.|-||.=+.+.|+|.+||.|.|... |.-+.|.|..
T Consensus 12 s~~v~iPk~~~~~lgl~~gd~v~i~~~----~~~iii~p~~ 48 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLV----DGKLIIEPVR 48 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEE----TTEEEEEEC-
T ss_pred ccEEEECHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 367999999999999999999988652 3458888874
No 23
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=64.81 E-value=1.4 Score=33.91 Aligned_cols=14 Identities=64% Similarity=1.030 Sum_probs=12.2
Q ss_pred cccceeeeceecCC
Q 035839 224 KFKAFTGKGKLLGF 237 (238)
Q Consensus 224 ~f~~F~G~G~rldg 237 (238)
++++|+|.|+||++
T Consensus 81 ~~~~F~G~G~~LGs 94 (102)
T 1ss6_A 81 AFKAFTGEGQKLGS 94 (102)
T ss_dssp SSTTSCSSSSSGGG
T ss_pred cccCCcccCeECCC
Confidence 57899999999974
No 24
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=59.77 E-value=7.4 Score=32.72 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred eCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecC
Q 035839 77 ADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHT 119 (238)
Q Consensus 77 A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s 119 (238)
...|.|.+|.=+.+.|++++||.|.+.. -+.|. +.|+|.+
T Consensus 11 ~~kGqItIPkeiR~~LgI~~GD~l~~~~--~~dG~-Iil~~~~ 50 (178)
T 2w1t_A 11 DDLGRVVIPKEIRRTLRIREGDPLEIFV--DRDGD-VILKKYS 50 (178)
T ss_dssp CTTSEEECCHHHHHHTTCCTTCEEEEEE--CTTSC-EEEEECC
T ss_pred CCCceEEEcHHHHHHcCcCCCCEEEEEE--eCCCE-EEEEECC
Confidence 4679999999999999999999998764 34443 7788875
No 25
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=57.35 E-value=4.6 Score=33.46 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=45.5
Q ss_pred eE-eCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEE
Q 035839 75 FT-ADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMH 153 (238)
Q Consensus 75 F~-A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~ 153 (238)
|+ +..|.+-||.-.|+.|++.+||.|.|+..+ .+....-|-..++-+ ...-.--+-..+|+-.-|..||.+.|.-
T Consensus 19 ~~~~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~---~t~~~~w~~~~~~~d-~~~~~I~Id~~~r~n~gv~~Gd~V~V~~ 94 (179)
T 1wlf_A 19 FTNARDCFLHLPRRLVAQLHLLQNQAIEVASDH---QPTYLSWVEGRHFND-QSENVAEINRQVGQKLGLSSGDQVFLRP 94 (179)
T ss_dssp EECCSSSCEEECHHHHHHTTCCTTCCEEEESSS---CCEEECEEECSSCC----CCEEEEEHHHHHHTTCCTTCEEEEEE
T ss_pred EECCCCcEEECCHHHHHHcCCCCCcEEEEEeCC---eeEEEEEECCCCccc-CCCCEEEECHHHHhHCCCCCCCEEEEEE
Confidence 44 356899999999999999999999999743 233322222111101 0000000124566656699999999874
No 26
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=55.09 E-value=11 Score=30.84 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=24.1
Q ss_pred EEEeeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEe
Q 035839 70 CGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNV 105 (238)
Q Consensus 70 ~GVlEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~ 105 (238)
-.++|++|+.. +-+.|+|++||.|.|+..
T Consensus 105 ~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 105 SEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp EEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 56888888765 889999999999998853
No 27
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=54.75 E-value=16 Score=26.76 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=27.3
Q ss_pred HhHHhhcCCCCCCeEEEEEeeeCCceeEEEe
Q 035839 86 NWMMDNMKLQEYELVRVTNVSLAKATYMKLQ 116 (238)
Q Consensus 86 ~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLq 116 (238)
.-+.+.+|+++||.|.|...+---|.+|..+
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEFVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 4589999999999999999998999988754
No 28
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=48.97 E-value=16 Score=28.83 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=25.6
Q ss_pred CCcEeccHhHHhhcCCCCCCeEEEEEeeeCCc
Q 035839 79 EGFIYLPNWMMDNMKLQEYELVRVTNVSLAKA 110 (238)
Q Consensus 79 EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkg 110 (238)
+.-||+|...++..+|..||.|..... -|+.
T Consensus 76 ~~DiyVs~~~irrf~lr~GD~V~g~vr-~~~~ 106 (130)
T 1a62_A 76 PDDIYVSPSQIRRFNLRTGDTISGKIR-PPKE 106 (130)
T ss_dssp TTCEEECHHHHHHTTCCTTCEEEEEEE-CCCT
T ss_pred CCCEEECHHHHhHhCCCCCCEEEEEEe-CCCC
Confidence 457999999999999999999988754 4443
No 29
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=48.39 E-value=16 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.1
Q ss_pred hHHhhcCCCCCCeEEEEEeeeCCceeEEEe
Q 035839 87 WMMDNMKLQEYELVRVTNVSLAKATYMKLQ 116 (238)
Q Consensus 87 Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLq 116 (238)
-+++.+|+++||.|.|...+---|.++..+
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~taG~~v~YR 71 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPTAGVSIAYR 71 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 488999999999999998888888888654
No 30
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=47.24 E-value=21 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=39.8
Q ss_pred eCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 107 LAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 107 LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
-+.||.|.|+|--.-|++...---..|...||.++.|..|=.|.+...
T Consensus 134 ~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 134 DKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp SCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 489999999998888965354455679999999999999988888764
No 31
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=47.08 E-value=1.1e+02 Score=24.46 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=62.7
Q ss_pred eeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCc---ccccCCEE
Q 035839 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFS---CLTTGDTI 149 (238)
Q Consensus 73 lEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys---~LT~Gd~I 149 (238)
++|.-..|.+ +|.|--.=++++.|+...|.. |. ..+|-+ .|+..+.+-.+..|. .+..|+.+
T Consensus 27 ~~f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~i---pp---------~~aYG~--~~~~lv~~v~~~~f~~~~~~~~G~~~ 91 (158)
T 3cgm_A 27 LSYLHGHRNL-IPGLEEALEGREEGEAFQAHV---PA---------EKAYGP--HDPEGVQVVPLSAFPEDAEVVPGAQF 91 (158)
T ss_dssp EEEETTSSSS-CHHHHHHHTTCBTTCEEEEEE---CG---------GGTTCC--CCGGGEEEEEGGGSCTTSCCCTTCEE
T ss_pred EEEEECCCCc-ChHHHHHHcCCCCCCEEEEEE---Cc---------HHHcCC--CCcceEEEEEHHHCCCCCCCccCCEE
Confidence 8888777765 899999999999999887653 21 123322 355554444444554 58899999
Q ss_pred EEEEC-CEEEEEEEEEecCCCceEEEeCceEEEecCCCC
Q 035839 150 MIMHN-ESKYYIDVLETKPSNAVSITETDCEVDFAPPLD 187 (238)
Q Consensus 150 ~I~~~-~~~y~l~V~e~kP~~aVsIidTDl~VDf~ppl~ 187 (238)
.+.-. ++.+...|.++ -++.+.|||--||-
T Consensus 92 ~~~~~~G~~~~~~V~~v--------~~~~v~vD~NHPLA 122 (158)
T 3cgm_A 92 YAQDMEGNPMPLTVVAV--------EGEEVTVDFNHPLA 122 (158)
T ss_dssp EEEETTTEEEEEEEEEE--------ETTEEEEECSCTTT
T ss_pred EEECCCCCEEEEEEEEE--------CCCEEEEeCCcccc
Confidence 98764 36666666664 45678888888874
No 32
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=46.40 E-value=25 Score=29.52 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred eeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCc---ccccCCEEE
Q 035839 74 EFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFS---CLTTGDTIM 150 (238)
Q Consensus 74 EF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys---~LT~Gd~I~ 150 (238)
+|.--.|. ++|.|--.=++++.|+..+|.. |. ..+|-+ .|+..|.+-.+..|. .|..|+++.
T Consensus 33 ~f~lG~g~-vipG~eeaL~Gm~vGe~~~v~I---pp---------e~aYGe--~~~~lV~~vp~~~f~~~~~~~~G~~~~ 97 (196)
T 2kfw_A 33 DYLHGHGS-LISGLETALEGHEVGDKFDVAV---GA---------NDAYGQ--YDENLVQRVPKDVFMGVDELQVGMRFL 97 (196)
T ss_dssp EEESSSSS-SCHHHHHHHSSSCTTCEEEEEC---ST---------TTTSSC--CCTTTCEEECGGGCCCSSCCCTTCEEE
T ss_pred EEEECCCC-cchHHHHHHcCCCCCCEEEEEe---Cc---------HHhcCC--CChhhEEEEEHHHCCCccCcccCCEEE
Confidence 34433343 4899998899999999887653 22 123322 344444333334444 488999999
Q ss_pred EEECCEEEEEEEEEecCCCceEEEeCceEEEecCCCC
Q 035839 151 IMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLD 187 (238)
Q Consensus 151 I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf~ppl~ 187 (238)
+.-.+-.+...|+++ -+..+.|||--||-
T Consensus 98 ~~~~~G~~~~~V~~v--------~~~~V~vD~NHPLA 126 (196)
T 2kfw_A 98 AETDQGPVPVEITAV--------EDDHVVVDGNHMLA 126 (196)
T ss_dssp EEETTEEEEEEBCCC--------CSSSEEECCCCTTS
T ss_pred EECCCCcEEEEEEEE--------cCCEEEEeCCCCCC
Confidence 876655455555554 45567788888863
No 33
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=45.27 E-value=20 Score=25.79 Aligned_cols=26 Identities=4% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCcEeccHhHHhhcCCCCCCeEEEEE
Q 035839 79 EGFIYLPNWMMDNMKLQEYELVRVTN 104 (238)
Q Consensus 79 EG~i~lP~Wmm~~L~l~~gd~V~v~~ 104 (238)
.-++.+|.=+.++|+|++||.+.++.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~v 49 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILNM 49 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEEE
Confidence 34688999999999999999877664
No 34
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=45.05 E-value=15 Score=29.07 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=25.2
Q ss_pred CCCcEeccHhHHhhcCCCCCCeEEEEEe
Q 035839 78 DEGFIYLPNWMMDNMKLQEYELVRVTNV 105 (238)
Q Consensus 78 ~EG~i~lP~Wmm~~L~l~~gd~V~v~~~ 105 (238)
++..|.|-.--++.|||++||.|+|.+.
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~ 78 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTE 78 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECS
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeC
Confidence 4678999999999999999999999874
No 35
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=44.57 E-value=78 Score=25.71 Aligned_cols=92 Identities=11% Similarity=0.088 Sum_probs=54.7
Q ss_pred eeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccC---cccccCCEE
Q 035839 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKF---SCLTTGDTI 149 (238)
Q Consensus 73 lEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrny---s~LT~Gd~I 149 (238)
++|.-..|. ++|.|--.=++++.|+...|... |. .+|-+ .|+..|.+-....| ..+..|+.+
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~~Ge~~~v~ip--pe----------~aYG~--~~~~~v~~v~~~~f~~~~~~~~G~~~ 96 (171)
T 2k8i_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAVG--AN----------DAYGQ--YDENLVQRVPKDVFMGVDELQVGMRF 96 (171)
T ss_dssp EEEETTSCS-SCSHHHHHHTTCCTTCEEEEEEE--TT----------TSSCC--CCTTSEEEEEGGGGTTSSCCCTTCEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEEC--cH----------HhcCC--CChhhEEEeeHHHCCcccCccCCcEE
Confidence 344444443 58999999999999999887643 11 12211 22222222222223 258899999
Q ss_pred EEEECCEEEEEEEEEecCCCceEEEeCceEEEecCCCC
Q 035839 150 MIMHNESKYYIDVLETKPSNAVSITETDCEVDFAPPLD 187 (238)
Q Consensus 150 ~I~~~~~~y~l~V~e~kP~~aVsIidTDl~VDf~ppl~ 187 (238)
.+.-.+-.+...|+++. +..+.|||--||-
T Consensus 97 ~~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLA 126 (171)
T 2k8i_A 97 LAETDQGPVPVEITAVE--------DDHVVVDGNHMLA 126 (171)
T ss_dssp EEEETTEEEEEEEEEEC--------SSEEEEESCCSSC
T ss_pred EEECCCCcEEEEEEEEc--------CCEEEEeCCCCCC
Confidence 98876544555566543 5567788887763
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.32 E-value=15 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCCceEEEEEeCCCCCeEEEEEeeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCCh
Q 035839 50 EVGYPMMFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNP 129 (238)
Q Consensus 50 ~i~~Pm~F~i~n~~~~~~th~GVlEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~np 129 (238)
+...|..+.+...... +-|.+.|..-.|+.|++.+||.|.|+..+- +.|-++..|.... ..-
T Consensus 19 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~ 80 (806)
T 1ypw_A 19 QKNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKKR-REAVCIVLSDDTC-----SDE 80 (806)
T ss_dssp CCCCTTEEEEECCSSC------------CSSCEEECHHHHHHHTCCTTCEEEEEETTT-EECCEEEEECSSS-----CTT
T ss_pred ccCCCceEEEccCcCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCcc-CcEEEEEecCCCC-----CCC
Confidence 3456666666553221 338999999999999999999999998632 2344555553211 111
Q ss_pred HHHHHHhhccCcccccCCEEEEEEC
Q 035839 130 RAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 130 KavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
..-+-...|+-..+..||+|.|.--
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~ 105 (806)
T 1ypw_A 81 KIRMNRVVRNNLRVRLGDVISIQPC 105 (806)
T ss_dssp EEECCHHHHTTTTCCTTCEEEEEEC
T ss_pred eEEecHHHHhhcCCCCCCEEEEEEC
Confidence 1113356677788999999999644
No 37
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=42.22 E-value=46 Score=23.14 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=37.6
Q ss_pred cCCCCCCeEEEEEe-eeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEE
Q 035839 92 MKLQEYELVRVTNV-SLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIM 152 (238)
Q Consensus 92 L~l~~gd~V~v~~~-~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~ 152 (238)
|.++.|+.+.-+-. -.+.|-||.|.+.-..|+. +++... ..+..+..||.|.+.
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh-~sel~~------~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLR-PRDMIS------LRLENLNVGDEIIVQ 55 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEC-GGGCSS------CCGGGCCTTCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEE-HHHCCc------ccceeeCCCCEEEEE
Confidence 35678998876654 4789999999877677876 553210 011579999998874
No 38
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.39 E-value=59 Score=31.03 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=58.2
Q ss_pred EEEEEeCCCCCeEEEEEeeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHH
Q 035839 56 MFELCNLSSGKTTHCGVVEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEA 135 (238)
Q Consensus 56 ~F~i~n~~~~~~th~GVlEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~ 135 (238)
.|+.-.+.+++.++||-.-+....-..-|=..|.+.||+.++..+++ |=.++|. -.+.|.|++..++.
T Consensus 134 FlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~l---------yEEi~~~---~ie~l~~~~~t~~~ 201 (530)
T 2ylm_A 134 FLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLIL---------YEEVKPN---LTERIQDYDVSLDK 201 (530)
T ss_dssp EEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEE---------EEEEETT---EEEECCCSSSBHHH
T ss_pred EEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEE---------EEecCCC---ceeEcccccccHHH
Confidence 45555666778899999999877666667788999999998877666 2233332 12225556665555
Q ss_pred hhccCcccccCCEEEEEEC
Q 035839 136 ILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 136 ~Lrnys~LT~Gd~I~I~~~ 154 (238)
+| .-|..||+|.+.-.
T Consensus 202 ~~---~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 202 AL---DELMDGDIIVFQKD 217 (530)
T ss_dssp HS---TTCCTTEEEEEEEC
T ss_pred HH---hcccCCCEEEEEec
Confidence 55 67888999999754
No 39
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=40.31 E-value=8.6 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=25.6
Q ss_pred ccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEe
Q 035839 84 LPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQ 116 (238)
Q Consensus 84 lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLq 116 (238)
+.---++.|.|+.||.|.|. .+||.+++-..
T Consensus 54 V~~~~vk~LeLRiGD~VKVd--~vpK~~hiVvG 84 (153)
T 2fhd_A 54 VNSNQIKRFFLKKGDVVQST--RLGKIKHTVVK 84 (153)
T ss_dssp EETTSEEESCCCTTCEEEET--TSTTCCEEEEE
T ss_pred cChhhceeeeeecCCEEEEC--CCCCccEEEEE
Confidence 34445788999999999999 99999998653
No 40
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=38.36 E-value=36 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.8
Q ss_pred ccccCCEEEEEECCEEEEEEEEEe
Q 035839 142 CLTTGDTIMIMHNESKYYIDVLET 165 (238)
Q Consensus 142 ~LT~Gd~I~I~~~~~~y~l~V~e~ 165 (238)
-|..||.|.|...++.|...|.++
T Consensus 75 ~l~~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 75 QLKEKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp HSSTTCEEEEEETTEEEEEEEEEE
T ss_pred cccCCCEEEEEECCcEEEEEEEeE
Confidence 467999999999999998888765
No 41
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=37.82 E-value=32 Score=31.59 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCeEEEEEeeeEeCCCc-EeccHhHHhhcCCCCCCeEEEE
Q 035839 56 MFELCNLSSGKTTHCGVVEFTADEGF-IYLPNWMMDNMKLQEYELVRVT 103 (238)
Q Consensus 56 ~F~i~n~~~~~~th~GVlEF~A~EG~-i~lP~Wmm~~L~l~~gd~V~v~ 103 (238)
.+-|+|..... --|.+.+...+.|. +.|+.-+++.|++++||.|++-
T Consensus 291 ~~lv~n~~~~~-FRa~~~~~~~~~~~~~~l~~~~a~aL~v~~Gd~vr~~ 338 (342)
T 1yle_A 291 PYLVTNGQLQD-FRAVVLDLDWAPGKPVALSVEAAEALGVGEGASVRLV 338 (342)
T ss_dssp EEEEECCCSTT-CCEEEEEECCCTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred eEEEECCCccC-eeEEEeccccCCCCeEecCHHHHHhcCCCCCCEEEEE
Confidence 36677754321 11335566666677 8999999999999999999874
No 42
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=36.55 E-value=36 Score=28.92 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=40.2
Q ss_pred eeCCceeEEEeecCccccccC-CChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 106 SLAKATYMKLQPHTKGFLDEL-SNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 106 ~LPkgt~vkLqP~s~~F~~~i-~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
.-+.||.|+|+|--.-|.. . .--...|...||.++-|..|=.|.+...
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~-~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTN-VTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CSCCEEEEEEEECTTTCCS-SCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred cCCCCcEEEEEECHHHhCC-cccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 4589999999998888976 4 4555679999999999999988888764
No 43
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=36.25 E-value=1.2e+02 Score=26.05 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred CccccccCCC--hHHHHHHhhccCc-----ccccCCEEEEEECCEEEEEEEEEecCCCceEEEeCc
Q 035839 119 TKGFLDELSN--PRAVLEAILRKFS-----CLTTGDTIMIMHNESKYYIDVLETKPSNAVSITETD 177 (238)
Q Consensus 119 s~~F~~~i~n--pKavLE~~Lrnys-----~LT~Gd~I~I~~~~~~y~l~V~e~kP~~aVsIidTD 177 (238)
+..+++.|.+ -|.+....|+.|+ -|..|..|.++.|++-+.-.|+++.-+=+.-.-++|
T Consensus 128 s~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~d 193 (213)
T 3dlm_A 128 LKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDD 193 (213)
T ss_dssp CSSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTT
T ss_pred ccchhhhcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCC
Confidence 3567766987 3999999999776 388999999999999999999997654444333443
No 44
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=36.23 E-value=17 Score=28.13 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCChHHHHHHhhc--cCcccccCCEEEEEECCEEEEEEEEEec
Q 035839 126 LSNPRAVLEAILR--KFSCLTTGDTIMIMHNESKYYIDVLETK 166 (238)
Q Consensus 126 i~npKavLE~~Lr--nys~LT~Gd~I~I~~~~~~y~l~V~e~k 166 (238)
|.+=+...|-+|. +|..+.+||+|.+ +++.....|.+++
T Consensus 15 I~~G~KtiEiRlnd~k~~~ikvGD~I~f--~~~~l~~~V~~v~ 55 (109)
T 2z0t_A 15 IKAGKKKIEGRLYDEKRRQIKPGDIIIF--EGGKLKVKVKGIR 55 (109)
T ss_dssp HHTTSCCEEEEECCTTGGGCCTTCEEEE--GGGTEEEEEEEEE
T ss_pred HHcCCCEEEEEecchhhhcCCCCCEEEE--CCCEEEEEEEEEE
Confidence 4343444455554 6889999999999 4555666666653
No 45
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=35.58 E-value=47 Score=23.48 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.8
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 035839 143 LTTGDTIMIMHNESKYYIDVLE 164 (238)
Q Consensus 143 LT~Gd~I~I~~~~~~y~l~V~e 164 (238)
|--+..|.|.|++..|.|++..
T Consensus 34 l~g~~~v~I~H~G~~Y~LR~Tr 55 (63)
T 2loj_A 34 LGPDGKVIIDHNGQEYLLRKTQ 55 (63)
T ss_dssp STTTCEEEEEETTEEEEEEEET
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 4566899999999999999864
No 46
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=34.91 E-value=48 Score=24.43 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=25.3
Q ss_pred HhHHhhcCCCCCCeEEEEEeeeCCceeEEEe
Q 035839 86 NWMMDNMKLQEYELVRVTNVSLAKATYMKLQ 116 (238)
Q Consensus 86 ~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLq 116 (238)
.-+.+.+|+++||.|.|.-.+---|.++..+
T Consensus 49 DPva~~~g~k~GdVvkI~R~S~tag~~~~YR 79 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKSQLYGEVVSYR 79 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhHHhhCCCCCCEEEEEEcCCCCCccEEEE
Confidence 3488999999999999998887778776543
No 47
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=33.40 E-value=1.2e+02 Score=24.70 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=54.5
Q ss_pred eeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCc---ccccCCEE
Q 035839 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFS---CLTTGDTI 149 (238)
Q Consensus 73 lEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys---~LT~Gd~I 149 (238)
++|.--.|. ++|.|--.=++++.|+...|..- . ..+|-+ .|+..|.+-....|. .|..|..+
T Consensus 55 ~~f~lG~g~-vipG~eeaL~gm~~Ge~~~v~Ip---p---------~~AYG~--~~~~lv~~vp~~~f~~~~~~~~G~~~ 119 (169)
T 4dt4_A 55 ALFRLGDAS-LSEGLEQHLLGLKVGDKTTFSLE---P---------DAAFGV--PSPDLIQYFSRREFMDAGEPEIGAIM 119 (169)
T ss_dssp EEEETTSSS-SCHHHHHHHTTCCTTCEEEEEEC---G---------GGTTCC--CCGGGEEEEEGGGGTTTCCCCTTCEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEC---h---------HHhcCC--CChHHEEEeCHHHCCCcCCCCCCcEE
Confidence 455554454 57999999999999998876542 1 223322 333333222222332 37788888
Q ss_pred EEEEC-CEEEEEEEEEecCCCceEEEeCceEEEecCCC
Q 035839 150 MIMHN-ESKYYIDVLETKPSNAVSITETDCEVDFAPPL 186 (238)
Q Consensus 150 ~I~~~-~~~y~l~V~e~kP~~aVsIidTDl~VDf~ppl 186 (238)
.+.-. +..+...|+++. +..+.|||--||
T Consensus 120 ~~~~~~G~~~~~~V~~v~--------~~~V~vD~NHPL 149 (169)
T 4dt4_A 120 LFTAMDGSEMPGVIREIN--------GDSITVDFNHPL 149 (169)
T ss_dssp EEECTTSCEEEEEEEEEE--------TTEEEEECSCTT
T ss_pred EEECCCCCEEEEEEEEEc--------CCEEEEeCCCcc
Confidence 88653 455666666643 456777877775
No 48
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=32.37 E-value=1.1e+02 Score=23.97 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=52.1
Q ss_pred eeeEeCCCcEeccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccC--cccccCCEEE
Q 035839 73 VEFTADEGFIYLPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKF--SCLTTGDTIM 150 (238)
Q Consensus 73 lEF~A~EG~i~lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrny--s~LT~Gd~I~ 150 (238)
++|.-..|. ++|.|=-.=++++.|+...|..- . ..+|-+ .|+..|.+-....| ..+..|+.+.
T Consensus 37 ~~f~~G~g~-vipg~e~aL~gm~~Ge~~~v~ip---p---------~~aYG~--~~~~~v~~v~~~~f~~~~~~~G~~~~ 101 (151)
T 2kr7_A 37 LEFIIGTNQ-IIAGLEKAVLKAQIGEWEEVVIA---P---------EEAYGV--YESSYLQEVPRDQFEGIELEKGMSVF 101 (151)
T ss_dssp EEEETTCCC-SCHHHHHHHTTCCBTCEEEEEEC---G---------GGTTCS--SCSCEEEEEEGGGGTTSCCCTTCEEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEe---c---------HHHcCC--CCcceEEEEcHHHcCCCCCccCCEEE
Confidence 445544443 48999999999999998886642 1 112221 12211111111222 3577888888
Q ss_pred EEEC-CEEEEEEEEEecCCCceEEEeCceEEEecCCC
Q 035839 151 IMHN-ESKYYIDVLETKPSNAVSITETDCEVDFAPPL 186 (238)
Q Consensus 151 I~~~-~~~y~l~V~e~kP~~aVsIidTDl~VDf~ppl 186 (238)
+.-. +..+...|.++. +..+.|||--||
T Consensus 102 ~~~~~G~~~~~~V~~v~--------~~~v~vD~NHPL 130 (151)
T 2kr7_A 102 GQTEDNQTIQAIIKDFS--------ATHVMVDYNHPL 130 (151)
T ss_dssp EEETTTEEEEEEEEEEC--------SSEEEEEECCTT
T ss_pred EECCCCCEEEEEEEEEC--------CCEEEEECCCcC
Confidence 7653 445555666654 456677887776
No 49
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=32.33 E-value=13 Score=28.72 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=25.4
Q ss_pred ccHhHHhhcCCCCCCeEEEEEeeeCCceeEEE
Q 035839 84 LPNWMMDNMKLQEYELVRVTNVSLAKATYMKL 115 (238)
Q Consensus 84 lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkL 115 (238)
|=..||+.|.|.+.|.|.|-...|++|+-+.+
T Consensus 17 ~~~~~m~~I~i~p~DNVaVAl~~L~aG~~v~~ 48 (105)
T 3k3s_A 17 LYFQGMQYIKIHALDNVAVALADLAEGTEVSV 48 (105)
T ss_dssp ----CCSEECCSTTCSEEEESSCBCTTCEEEE
T ss_pred hhhhcCCEEEcCCCCCEEEecCccCCCCEEee
Confidence 44579999999999999998889999998764
No 50
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=31.42 E-value=63 Score=25.11 Aligned_cols=24 Identities=4% Similarity=0.056 Sum_probs=20.7
Q ss_pred ccccCCEEEEEECCEEEEEEEEEe
Q 035839 142 CLTTGDTIMIMHNESKYYIDVLET 165 (238)
Q Consensus 142 ~LT~Gd~I~I~~~~~~y~l~V~e~ 165 (238)
-|.+||.|.|...++.|...|.++
T Consensus 74 ~l~~Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 74 AAKKGSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp GCCTTCEEEEEETTEEEEEEEEEE
T ss_pred hCCCCCEEEEEECCEEEEEEEEEE
Confidence 467999999999999999888765
No 51
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=30.99 E-value=53 Score=21.30 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=19.3
Q ss_pred eccHhHHhhcCCCCCCeEEEEE
Q 035839 83 YLPNWMMDNMKLQEYELVRVTN 104 (238)
Q Consensus 83 ~lP~Wmm~~L~l~~gd~V~v~~ 104 (238)
.++.+-.+.|+|.+|+.|.+..
T Consensus 37 ~it~~s~~~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 37 AITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEHHHHHHHTCCTTCEEEEEE
T ss_pred EeCHHHHHhCCCCCCCEEEEEE
Confidence 4799999999999999998764
No 52
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=30.87 E-value=40 Score=29.61 Aligned_cols=56 Identities=13% Similarity=0.332 Sum_probs=41.0
Q ss_pred CccccccCCChHHHHHHhhccCcccccCCEEEEE-------E----CCEEEEEEEEEecCC-CceEEEeCc
Q 035839 119 TKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIM-------H----NESKYYIDVLETKPS-NAVSITETD 177 (238)
Q Consensus 119 s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~-------~----~~~~y~l~V~e~kP~-~aVsIidTD 177 (238)
.++|++ +.=|...|-..+.+| |.+|+.|.|+ | +++.|...|+.+.|- ..|.+++.|
T Consensus 190 ~Tdw~~-Vv~wgk~~~AEi~~~--L~KG~~V~VeGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~~~ 257 (257)
T 4dni_A 190 EKDHHT-IRCFGELFSAEVKQK--VKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGD 257 (257)
T ss_dssp EEEEEE-EEEESHHHHHHHHHH--CCTTCEEEEEEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECCCC
T ss_pred ceEEEE-EEEECCccHHHHHhh--CCCCCEEEEEEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEecCC
Confidence 457888 877777632225566 9999999995 3 347899999999864 778887765
No 53
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=30.20 E-value=56 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.6
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 035839 143 LTTGDTIMIMHNESKYYIDVLE 164 (238)
Q Consensus 143 LT~Gd~I~I~~~~~~y~l~V~e 164 (238)
|.-+..|.|.|++..|.|++..
T Consensus 38 l~g~~ev~I~H~G~~Y~LR~Tr 59 (67)
T 2jra_A 38 FTVDREIVIAHGDDRYRLRLTS 59 (67)
T ss_dssp TTSSSEEEEEETTEEEEEEECT
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 4567899999999999999854
No 54
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=29.32 E-value=51 Score=28.17 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.9
Q ss_pred eCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 107 LAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 107 LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
-+.||.|+|+|--.-|-. ..=-...|.+.||.++-|..|=.|.+...
T Consensus 168 ~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~de 214 (226)
T 4emv_A 168 SKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDK 214 (226)
T ss_dssp TCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEET
T ss_pred CCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 578999999998878843 55456789999999999999988888754
No 55
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=27.52 E-value=3.5 Score=30.07 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.8
Q ss_pred hHHhhcCCCCCCeEEE
Q 035839 87 WMMDNMKLQEYELVRV 102 (238)
Q Consensus 87 Wmm~~L~l~~gd~V~v 102 (238)
=+++.|||++||.|+|
T Consensus 42 ~~Lr~LGi~eGDIIrV 57 (72)
T 3idw_A 42 SMLRTLGLREGDIVRV 57 (72)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCchhhHHHH
Confidence 4889999999998875
No 56
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=24.50 E-value=81 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.4
Q ss_pred ccccCCEEEEEECCEEEEEEEEEe
Q 035839 142 CLTTGDTIMIMHNESKYYIDVLET 165 (238)
Q Consensus 142 ~LT~Gd~I~I~~~~~~y~l~V~e~ 165 (238)
-|.+||.|.|...++.|...|.++
T Consensus 98 ~lk~GD~I~v~~~~~~~~Y~V~~~ 121 (187)
T 3fn5_A 98 RAQNGMSIYLTDKEKIYEYIIKDV 121 (187)
T ss_dssp GCCTTCEEEEECSSEEEEEEEEEE
T ss_pred HCcCCCEEEEEECCeEEEEEEeeE
Confidence 378999999999998888888665
No 57
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=23.44 E-value=37 Score=25.78 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=27.8
Q ss_pred CCCeeeecHHHHHHHHhCCCCCce-----EEEEEeCCCCCeEEEEE
Q 035839 32 PGDKIIMPQSAFDRLAHTEVGYPM-----MFELCNLSSGKTTHCGV 72 (238)
Q Consensus 32 ~gdKIiLP~SaL~~L~~~~i~~Pm-----~F~i~n~~~~~~th~GV 72 (238)
.|=+|++.+..+..|....|.|== -|.+.|+....+|-||-
T Consensus 58 ~Gv~v~vd~~s~~~L~g~~IDy~~~~~g~gF~~~NPna~~~CgCG~ 103 (118)
T 1r94_A 58 KGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGE 103 (118)
T ss_dssp TTEEEEEEGGGHHHHTTCEEEEEEETTEEEEEEECTTCCC------
T ss_pred CCEEEEEEHHHHHHhCCCEEEEEcCCCcCceEEeCCCCCCCCCCCC
Confidence 466899999999999887765521 59999988877888884
No 58
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=23.07 E-value=43 Score=27.33 Aligned_cols=93 Identities=10% Similarity=-0.053 Sum_probs=55.3
Q ss_pred CceEEEEEeCCCCCeEEEEEeeeEeCCCcEec-cHhHHhhcCCCCCCeEEEEEee-eCCceeEEEee----------cCc
Q 035839 53 YPMMFELCNLSSGKTTHCGVVEFTADEGFIYL-PNWMMDNMKLQEYELVRVTNVS-LAKATYMKLQP----------HTK 120 (238)
Q Consensus 53 ~Pm~F~i~n~~~~~~th~GVlEF~A~EG~i~l-P~Wmm~~L~l~~gd~V~v~~~~-LPkgt~vkLqP----------~s~ 120 (238)
.|=+|.- ...-+.+.+|++++. +..+.+ |. --.....+ ||.|.-+-++ -+.|=||.|.+ .-.
T Consensus 19 G~Gty~~--~~~i~as~~G~v~~~--~~~v~V~~~-~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~ 92 (179)
T 3m7n_A 19 GEGVYEE--GGELFAAVAGKLIIK--DRVAKVESI-SPIPEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGI 92 (179)
T ss_dssp CTTEEEE--TTEEEESSSEEEEEE--TTEEEEEES-SCCCCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEE
T ss_pred cCCEEEe--CCEEEEEEEEEEEEe--CCEEEEEEC-CCCcccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCee
Confidence 3445543 123346778999983 334432 31 00112346 9999877654 68999999988 445
Q ss_pred cccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 121 GFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 121 ~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
.++. +++.+.- ....-..+|..||.|....-
T Consensus 93 Gll~-isei~~~--~~~~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 93 GILH-VSNVDEG--YVKEISEAVGYLDILKARVI 123 (179)
T ss_dssp EEEE-GGGTTSS--CCSSGGGTCCTTCEEEEEEE
T ss_pred EEEE-HHHcCcc--hhhCHhhcCCCCCEEEEEEE
Confidence 6666 6654321 11223678999999988643
No 59
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=20.71 E-value=95 Score=24.10 Aligned_cols=24 Identities=8% Similarity=0.082 Sum_probs=20.8
Q ss_pred ccccCCEEEEEECCEEEEEEEEEe
Q 035839 142 CLTTGDTIMIMHNESKYYIDVLET 165 (238)
Q Consensus 142 ~LT~Gd~I~I~~~~~~y~l~V~e~ 165 (238)
.|..||+|.|...+..+.+.|+.+
T Consensus 48 ~V~~GD~I~I~~~~~~~~~~v~~~ 71 (133)
T 1dm9_A 48 IVELNATLTLRQGNDERTVIVKAI 71 (133)
T ss_dssp BCCTTCEEEEEETTEEEEEEECEE
T ss_pred EeCCCCEEEEEeCCceeeEEEccc
Confidence 367899999999999999988876
No 60
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=20.38 E-value=1e+02 Score=25.45 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=38.4
Q ss_pred eCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEEC
Q 035839 107 LAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHN 154 (238)
Q Consensus 107 LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~ 154 (238)
-+.||.|.+.|--.-| +...--...|...|+.|+-|..|=.|.+..+
T Consensus 145 ~~~GT~V~f~Pdr~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~ 191 (201)
T 3fv5_A 145 RNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 191 (201)
T ss_dssp TCCEEEEEEEECGGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEET
T ss_pred CCCCeEEEEEECHHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 5799999999988778 5355455678899999999999988888765
No 61
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=20.10 E-value=1.2e+02 Score=24.01 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.5
Q ss_pred ccccCCEEEEEECCEEEEEEEEEec
Q 035839 142 CLTTGDTIMIMHNESKYYIDVLETK 166 (238)
Q Consensus 142 ~LT~Gd~I~I~~~~~~y~l~V~e~k 166 (238)
-|.+||.|.|...++.|...|.+++
T Consensus 88 ~l~~Gd~i~v~~~~~~~~Y~V~~~~ 112 (158)
T 2kw8_A 88 SLKKGDKIYLYDNENEYEYAVTGVS 112 (158)
T ss_dssp GCCTTCEEEEECSSEEEEEEEEEEE
T ss_pred hCCcCCEEEEEECCcEEEEEEEEEE
Confidence 3567999999999999988887653
No 62
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=20.03 E-value=3.7e+02 Score=22.15 Aligned_cols=110 Identities=17% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCCCCCC-CeeeecHHHHHHHHhC-C--------------------C-CCceEEEEEeCCCCCeEEEEEeeeEeCCCcEe
Q 035839 27 KPQHEPG-DKIIMPQSAFDRLAHT-E--------------------V-GYPMMFELCNLSSGKTTHCGVVEFTADEGFIY 83 (238)
Q Consensus 27 ~~~~~~g-dKIiLP~SaL~~L~~~-~--------------------i-~~Pm~F~i~n~~~~~~th~GVlEF~A~EG~i~ 83 (238)
++.+..| |=+++|+.+.+.|.+- + + -||+.|+|...... ..+=..-|+.-+-.--
T Consensus 77 k~~l~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R~vi~~~~~~~vEvyP~~l~l~~~~~~--~~~~~~~~Sk~~ti~~ 154 (217)
T 4a3p_A 77 KEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFCKVEVYLTELKLCENGNM--NNVVTRRFSKADTIDT 154 (217)
T ss_dssp CSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEETTEEEECCSCEEEEEEETTEE--EEEEEEEECTTSBHHH
T ss_pred CcCcccCCCEEEECHHHHHHHHHHhCCCCCCCCcceeEEecCCeeEEEEeccEEEEEecCCC--CcceEEEEcccchHHH
Confidence 4555455 9999999999999641 1 1 37888888764332 2222344555444334
Q ss_pred ccHhHHhhcCCCCCCeEEEEEeeeCCceeEEEeecCccccccCCChHHHHHHhhccCcccccCCEEEEEECC
Q 035839 84 LPNWMMDNMKLQEYELVRVTNVSLAKATYMKLQPHTKGFLDELSNPRAVLEAILRKFSCLTTGDTIMIMHNE 155 (238)
Q Consensus 84 lP~Wmm~~L~l~~gd~V~v~~~~LPkgt~vkLqP~s~~F~~~i~npKavLE~~Lrnys~LT~Gd~I~I~~~~ 155 (238)
|=.-+.+.+++.....+|+=.... .++ +-. +.|+..-||. +.|..|+.|.|+..+
T Consensus 155 l~~~~~~~~~i~~~~~~RlW~~~~-~~~----------~~~-L~~~~~tl~~-----~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 155 IEKEIRKIFSIPDEKETRLWNKYM-SNT----------FEP-LNKPDSTIQD-----AGLYQGQVLVIEQKN 209 (217)
T ss_dssp HHHHHHHHTTCCTTSCEEEEEEEE-TTE----------EEE-CCCTTSBHHH-----HTCCTTCEEEEEECC
T ss_pred HHHHHHHHhCCCCCCceEEEEecC-CCC----------eee-cCCCCCCHHH-----hCCCCCCEEEEEEec
Confidence 555677778887665566654432 122 222 5565444444 367889999988765
Done!