BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035840
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL 60
LA+ ++ V A D Q+ A++ P + Y + P E +SVD+ A A
Sbjct: 57 LAEFFERVHAVDPGEAQIRQALRHPRVTYAVAP-------AEDTGLPPASVDVAIAAQAX 109
Query: 61 HWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAVFKPFDTVDCEPFWEPQRKLV 120
HWFDL +F+ +++ V +P V AA TY + ++ V AV W P+R V
Sbjct: 110 HWFDLDRFWAELRRV-ARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHV 168
Query: 121 DNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVMDLDNYFTFIRSCSGYQTAKDK-GVELLT 179
++ Y ++ FPF ++ +E+ D + ++ + S + + G + L
Sbjct: 169 ESGYRTLPFPFPELEA-------PPLEIEERWPXDAFLGYLGTWSAVTAHRRRTGADPLA 221
Query: 180 DNVMDKFKVAWNEDGQSQKVARFPIYLRIGQV 211
+ + + AW + +V +PI +R G++
Sbjct: 222 E-IAPALRAAWGTPERPLRVT-WPIAIRAGRI 251
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 41 LEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYT------MPEIN 94
L + + +D +T HWFD +F + L+K +G IA W Y PE +
Sbjct: 104 LGADSVDKQKIDXITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADPIFPDYPEFD 162
Query: 95 ESVGAVFKPFDTVDCEPFWE-PQRKLVDN 122
+ V P+ P+WE P R + N
Sbjct: 163 DLXIEV--PYGKQGLGPYWEQPGRSRLRN 189
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 83 IAAWTYTMPEINESVGAVFKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGP 142
I W MP+ N S V P D +D E ++P R D +++ P + G +G
Sbjct: 341 ILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGF 400
Query: 143 FDQFVLEKVM 152
FDQ +++M
Sbjct: 401 FDQGSFKEIM 410
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 83 IAAWTYTMPEINESVGAVFKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGP 142
I W MP+ N S + P D +D E + P R D ++M P + G +G
Sbjct: 317 ILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGF 376
Query: 143 FDQFVLEKVM 152
FD +++M
Sbjct: 377 FDHGSFKEIM 386
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 83 IAAWTYTMPEINESVGAVFKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGP 142
I W MP+ N S + P D +D E + P R D ++M P + G +G
Sbjct: 315 ILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGF 374
Query: 143 FDQFVLEKVM 152
FD +++M
Sbjct: 375 FDHGSFKEIM 384
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 43 QNVAT--QSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAV 100
Q+VA+ ++ VDL+ A L W P+ Q W + +P GV++ Y + V
Sbjct: 127 QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYNAHGLLXH-NXV 185
Query: 101 FKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEP-------------VDGVDNTGPFDQFV 147
FD V P++K + +S D+P +P + G F ++
Sbjct: 186 AGNFDYVQAG---XPKKK---KRTLSPDYPRDPTQVYLWLEEAGWQIXGKTGVRVFHDYL 239
Query: 148 LEKVMDLDNYFTFI 161
EK D Y +
Sbjct: 240 REKHQQRDXYEALL 253
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 43 QNVAT--QSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAV 100
Q+VA+ ++ VDL+ A L W P+ Q W + +P GV++ Y + V
Sbjct: 127 QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYNAHGLLXH-NXV 185
Query: 101 FKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEPV 134
FD V P++K + +S D+P +P
Sbjct: 186 AGNFDYVQAG---XPKKK---KRTLSPDYPRDPT 213
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 47 TQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAVFKPFD 105
T S+ DLV A A+ + P +++++ +PN IAA +PE +SV + + F+
Sbjct: 99 TISAADLVQFAGAVALSNCPG-APRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFE 156
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 47 TQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAVFKPFD 105
T S+ DLV A A+ + P +++++ +PN IAA +PE +SV + + F+
Sbjct: 99 TISAADLVQFAGAVALSNCPG-APRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFE 156
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 47 TQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMPEINESVGAVFKPFD 105
T S+ DLV A A+ + P +++++ +PN IAA +PE +SV + + F+
Sbjct: 99 TISAADLVQFAGAVALSNCPG-APRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFE 156
>pdb|4D8V|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8V|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8X|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P6322 At Ph 4.6
pdb|4D8Y|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|C Chain C, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|D Chain D, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|E Chain E, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|F Chain F, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D98|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D98|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D9H|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4D9H|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4DA0|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2'-Deoxyguanosine
pdb|4DA6|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Ganciclovir
pdb|4DA7|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Aciclovir
pdb|4DA8|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
8-Bromoguanosine
pdb|4DAB|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Hypoxanthine
pdb|4DAE|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
6-Chloroguanosine
pdb|4DAN|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAN|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAO|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAO|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAR|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Tubercidin
Length = 253
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 167 YQTAKDKGVELLTDNVM--DKFKVAWNEDGQSQKVARFPI 204
Y AKDKGV + +V D+F +N+D Q +K+A++ +
Sbjct: 158 YDAAKDKGVPVTVGSVFTADQF---YNDDSQIEKLAKYGV 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,687,254
Number of Sequences: 62578
Number of extensions: 283430
Number of successful extensions: 692
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 11
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)