Query 035840
Match_columns 213
No_of_seqs 130 out of 2221
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:55:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3010 Methyltransferase [Gen 100.0 1.3E-34 2.7E-39 226.6 13.8 209 1-212 51-261 (261)
2 COG2226 UbiE Methylase involve 99.8 7.5E-19 1.6E-23 140.5 8.8 79 6-92 76-161 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 3.6E-17 7.8E-22 131.6 7.9 90 5-103 72-168 (233)
4 PRK10258 biotin biosynthesis p 99.7 3.3E-15 7.1E-20 121.6 15.4 187 2-211 61-250 (251)
5 PF08241 Methyltransf_11: Meth 99.7 2.6E-16 5.7E-21 108.3 6.8 76 2-85 15-95 (95)
6 PRK14103 trans-aconitate 2-met 99.6 6.4E-15 1.4E-19 120.2 13.4 189 5-213 53-255 (255)
7 PLN02232 ubiquinone biosynthes 99.6 1E-15 2.3E-20 116.5 7.8 75 9-91 1-85 (160)
8 KOG1540 Ubiquinone biosynthesi 99.6 5.3E-15 1.1E-19 117.4 9.5 92 5-105 130-231 (296)
9 PLN02233 ubiquinone biosynthes 99.6 8.5E-15 1.8E-19 120.0 8.6 78 6-91 99-186 (261)
10 PRK01683 trans-aconitate 2-met 99.5 2E-13 4.3E-18 111.5 14.0 74 5-87 55-130 (258)
11 PLN02244 tocopherol O-methyltr 99.5 6.8E-14 1.5E-18 118.7 9.9 77 5-89 141-225 (340)
12 PRK08317 hypothetical protein; 99.5 2.2E-12 4.8E-17 103.4 15.9 76 6-89 45-126 (241)
13 COG4106 Tam Trans-aconitate me 99.4 8.1E-13 1.7E-17 102.8 9.7 189 5-212 54-256 (257)
14 TIGR02072 BioC biotin biosynth 99.4 1.4E-11 3.1E-16 98.8 14.2 178 6-211 59-240 (240)
15 PRK05785 hypothetical protein; 99.4 1.2E-12 2.6E-17 105.0 7.6 65 6-80 75-140 (226)
16 PTZ00098 phosphoethanolamine N 99.4 1.2E-11 2.6E-16 101.4 13.2 78 5-90 75-159 (263)
17 PLN02396 hexaprenyldihydroxybe 99.4 1.3E-12 2.8E-17 109.7 6.4 80 2-89 150-237 (322)
18 PRK11036 putative S-adenosyl-L 99.3 2.2E-12 4.7E-17 105.3 6.4 81 1-89 62-151 (255)
19 KOG4300 Predicted methyltransf 99.3 8.5E-12 1.8E-16 96.5 8.3 79 5-91 99-186 (252)
20 PRK11873 arsM arsenite S-adeno 99.3 2.4E-11 5.2E-16 100.0 8.9 76 6-89 103-185 (272)
21 TIGR02752 MenG_heptapren 2-hep 99.2 3.7E-11 8E-16 96.5 9.3 78 6-91 71-155 (231)
22 PRK11207 tellurite resistance 99.2 3.5E-11 7.5E-16 94.6 7.6 78 1-87 48-134 (197)
23 COG2227 UbiG 2-polyprenyl-3-me 99.2 1.5E-11 3.2E-16 97.6 4.9 82 1-90 77-164 (243)
24 PF13847 Methyltransf_31: Meth 99.2 5.9E-11 1.3E-15 89.3 7.6 76 5-89 28-112 (152)
25 PF08242 Methyltransf_12: Meth 99.2 1.2E-11 2.7E-16 86.2 3.4 73 5-83 20-99 (99)
26 PLN02336 phosphoethanolamine N 99.2 9.8E-11 2.1E-15 103.7 9.3 77 5-89 289-371 (475)
27 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.1E-10 2.3E-15 98.7 8.8 76 6-89 138-217 (340)
28 smart00138 MeTrc Methyltransfe 99.1 1.4E-10 3E-15 95.2 8.1 73 6-86 133-241 (264)
29 PF13649 Methyltransf_25: Meth 99.1 3.4E-11 7.5E-16 84.4 3.2 68 6-81 25-101 (101)
30 PRK15451 tRNA cmo(5)U34 methyl 99.1 2.5E-10 5.3E-15 92.9 7.4 75 5-89 82-166 (247)
31 PF13489 Methyltransf_23: Meth 99.1 8.3E-11 1.8E-15 88.6 4.1 76 2-89 41-117 (161)
32 PF12847 Methyltransf_18: Meth 99.1 6.4E-10 1.4E-14 79.0 7.4 76 4-87 24-111 (112)
33 KOG2940 Predicted methyltransf 99.1 7.3E-10 1.6E-14 87.2 7.9 79 4-90 94-177 (325)
34 PRK15068 tRNA mo(5)U34 methylt 99.0 5E-10 1.1E-14 94.4 7.5 74 6-88 146-227 (322)
35 TIGR00477 tehB tellurite resis 99.0 4.6E-10 1E-14 88.1 6.8 79 1-88 48-134 (195)
36 KOG1270 Methyltransferases [Co 99.0 2.8E-10 6E-15 91.2 5.5 78 1-89 107-197 (282)
37 PRK11088 rrmA 23S rRNA methylt 99.0 9.1E-10 2E-14 90.8 8.3 70 6-89 113-183 (272)
38 TIGR00740 methyltransferase, p 99.0 8E-10 1.7E-14 89.3 7.5 75 5-89 79-163 (239)
39 PLN02336 phosphoethanolamine N 99.0 7.8E-10 1.7E-14 98.0 7.9 82 1-88 55-143 (475)
40 PF05401 NodS: Nodulation prot 99.0 5.4E-10 1.2E-14 86.4 5.6 80 1-89 61-148 (201)
41 smart00828 PKS_MT Methyltransf 99.0 9.9E-10 2.2E-14 87.7 7.0 75 6-89 24-106 (224)
42 TIGR00452 methyltransferase, p 99.0 1.9E-09 4.2E-14 90.3 8.4 74 6-88 145-226 (314)
43 PRK06922 hypothetical protein; 99.0 2.5E-09 5.4E-14 96.3 8.4 76 5-88 442-538 (677)
44 PRK12335 tellurite resistance 98.9 3.7E-09 7.9E-14 87.8 7.0 77 2-87 139-223 (287)
45 PRK00216 ubiE ubiquinone/menaq 98.9 7.6E-09 1.6E-13 83.0 8.1 79 5-91 76-162 (239)
46 PRK06202 hypothetical protein; 98.9 6.8E-09 1.5E-13 83.5 7.3 74 6-89 89-168 (232)
47 PRK00107 gidB 16S rRNA methylt 98.9 1.2E-08 2.6E-13 79.5 8.2 71 5-87 69-145 (187)
48 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 1.5E-08 3.3E-13 80.4 8.7 78 6-91 65-147 (223)
49 TIGR03587 Pse_Me-ase pseudamin 98.8 1.5E-08 3.3E-13 80.0 8.5 76 5-91 67-146 (204)
50 PRK00121 trmB tRNA (guanine-N( 98.8 7.1E-09 1.5E-13 81.8 6.5 77 6-89 65-158 (202)
51 TIGR00138 gidB 16S rRNA methyl 98.8 2.8E-08 6.1E-13 77.1 7.9 69 6-86 67-141 (181)
52 TIGR03840 TMPT_Se_Te thiopurin 98.8 2.5E-08 5.4E-13 79.3 7.6 81 1-89 52-154 (213)
53 PLN03075 nicotianamine synthas 98.8 4.2E-08 9.1E-13 81.2 8.6 73 6-87 150-233 (296)
54 PRK11705 cyclopropane fatty ac 98.7 2.5E-08 5.5E-13 86.0 7.1 75 5-90 190-270 (383)
55 TIGR00091 tRNA (guanine-N(7)-) 98.7 2.6E-08 5.7E-13 78.1 6.5 76 6-89 41-134 (194)
56 TIGR01983 UbiG ubiquinone bios 98.7 6.2E-08 1.3E-12 77.3 7.7 79 3-89 65-151 (224)
57 PRK13255 thiopurine S-methyltr 98.6 1.2E-07 2.5E-12 75.8 7.5 78 1-86 55-154 (218)
58 TIGR02469 CbiT precorrin-6Y C5 98.6 1.4E-07 3.1E-12 67.8 7.4 72 6-87 44-122 (124)
59 PRK11188 rrmJ 23S rRNA methylt 98.6 1.6E-07 3.6E-12 74.4 7.3 74 6-92 77-170 (209)
60 TIGR02021 BchM-ChlM magnesium 98.6 1.3E-07 2.8E-12 75.4 6.7 73 2-85 74-156 (219)
61 TIGR02081 metW methionine bios 98.6 1.3E-07 2.8E-12 74.1 6.3 65 5-77 36-103 (194)
62 TIGR00537 hemK_rel_arch HemK-r 98.6 2.8E-07 6.1E-12 71.2 8.0 77 3-89 39-142 (179)
63 PRK05134 bifunctional 3-demeth 98.5 2.8E-07 6E-12 74.1 7.0 79 3-89 68-153 (233)
64 PF07021 MetW: Methionine bios 98.5 9.7E-07 2.1E-11 68.3 8.8 67 4-77 35-103 (193)
65 KOG1541 Predicted protein carb 98.5 4.4E-07 9.5E-12 71.3 6.9 80 3-89 70-162 (270)
66 PRK04266 fibrillarin; Provisio 98.5 3.8E-07 8.3E-12 73.2 6.8 75 6-86 97-175 (226)
67 COG2230 Cfa Cyclopropane fatty 98.5 1.3E-06 2.8E-11 71.8 9.9 80 2-92 91-181 (283)
68 PRK14121 tRNA (guanine-N(7)-)- 98.5 5.8E-07 1.3E-11 77.1 8.0 80 6-91 147-239 (390)
69 PRK13942 protein-L-isoaspartat 98.5 4.8E-07 1E-11 71.9 6.7 68 6-86 102-175 (212)
70 PRK09489 rsmC 16S ribosomal RN 98.4 6.1E-07 1.3E-11 76.3 7.0 87 6-102 221-318 (342)
71 PRK13944 protein-L-isoaspartat 98.4 1E-06 2.2E-11 69.7 7.7 69 5-86 97-172 (205)
72 PF02353 CMAS: Mycolic acid cy 98.4 5E-07 1.1E-11 74.5 5.6 74 5-89 85-168 (273)
73 PRK13256 thiopurine S-methyltr 98.4 1.4E-06 3.1E-11 69.6 7.5 87 1-88 61-164 (226)
74 PRK10611 chemotaxis methyltran 98.4 1.3E-06 2.9E-11 72.3 7.4 81 7-89 149-263 (287)
75 PTZ00146 fibrillarin; Provisio 98.4 1.6E-06 3.4E-11 71.7 7.6 75 6-86 158-236 (293)
76 PRK15001 SAM-dependent 23S rib 98.3 3.1E-06 6.8E-11 72.7 9.4 75 6-89 253-342 (378)
77 TIGR01177 conserved hypothetic 98.3 2E-06 4.4E-11 72.8 8.1 80 4-91 203-298 (329)
78 TIGR00080 pimt protein-L-isoas 98.3 1.4E-06 3E-11 69.4 6.5 68 6-86 103-176 (215)
79 PF03848 TehB: Tellurite resis 98.3 1.3E-06 2.9E-11 68.0 6.3 79 1-88 48-134 (192)
80 PF01739 CheR: CheR methyltran 98.3 9.7E-07 2.1E-11 69.2 5.4 71 7-85 66-173 (196)
81 cd02440 AdoMet_MTases S-adenos 98.3 4.5E-06 9.7E-11 56.9 8.3 75 4-86 20-103 (107)
82 PRK00312 pcm protein-L-isoaspa 98.3 2.1E-06 4.6E-11 68.1 6.9 74 2-88 97-176 (212)
83 PF05891 Methyltransf_PK: AdoM 98.3 2.9E-06 6.2E-11 66.9 7.4 80 1-88 74-162 (218)
84 PF05175 MTS: Methyltransferas 98.3 3.3E-06 7.1E-11 64.8 7.1 74 7-89 57-142 (170)
85 PRK00377 cbiT cobalt-precorrin 98.2 4.1E-06 8.8E-11 65.8 7.3 73 5-87 65-145 (198)
86 TIGR03438 probable methyltrans 98.2 3E-06 6.5E-11 70.9 6.9 74 5-86 88-176 (301)
87 COG4976 Predicted methyltransf 98.2 1.8E-07 3.9E-12 73.9 -0.5 80 4-89 146-227 (287)
88 TIGR00438 rrmJ cell division p 98.2 4.4E-06 9.5E-11 65.0 7.2 71 6-89 58-148 (188)
89 PF05148 Methyltransf_8: Hypot 98.2 1.2E-06 2.7E-11 68.5 3.9 53 36-89 108-160 (219)
90 PRK14967 putative methyltransf 98.2 6E-06 1.3E-10 66.0 8.0 75 6-89 60-161 (223)
91 KOG2361 Predicted methyltransf 98.2 4.1E-06 9E-11 66.7 6.4 83 7-93 99-189 (264)
92 PRK08287 cobalt-precorrin-6Y C 98.2 9.5E-06 2.1E-10 63.1 8.0 70 6-87 56-131 (187)
93 PF05219 DREV: DREV methyltran 98.2 5.6E-06 1.2E-10 66.9 6.6 75 1-86 112-187 (265)
94 PF13659 Methyltransf_26: Meth 98.2 2.5E-06 5.3E-11 60.9 4.0 74 6-87 24-115 (117)
95 PRK14968 putative methyltransf 98.1 8E-06 1.7E-10 63.1 7.1 77 2-87 42-148 (188)
96 TIGR02716 C20_methyl_CrtF C-20 98.1 9.3E-06 2E-10 68.0 7.9 73 6-89 174-256 (306)
97 KOG3045 Predicted RNA methylas 98.1 8.1E-06 1.8E-10 65.7 6.8 50 39-89 217-266 (325)
98 PRK07580 Mg-protoporphyrin IX 98.1 6E-06 1.3E-10 66.0 6.3 71 2-83 82-162 (230)
99 TIGR00406 prmA ribosomal prote 98.1 1.2E-05 2.7E-10 66.8 7.9 72 6-89 183-261 (288)
100 PLN02585 magnesium protoporphy 98.1 9.4E-06 2E-10 68.2 6.8 71 2-84 163-247 (315)
101 PF03291 Pox_MCEL: mRNA cappin 98.0 7.8E-06 1.7E-10 69.2 5.7 83 4-89 84-188 (331)
102 PRK07402 precorrin-6B methylas 98.0 2.3E-05 4.9E-10 61.4 7.9 75 5-89 64-144 (196)
103 PRK00811 spermidine synthase; 98.0 1.7E-05 3.8E-10 65.8 7.4 75 5-87 100-191 (283)
104 TIGR03534 RF_mod_PrmC protein- 98.0 2.7E-05 5.8E-10 63.0 8.1 72 6-86 112-216 (251)
105 KOG1975 mRNA cap methyltransfe 98.0 1E-05 2.2E-10 67.0 5.3 78 5-85 140-235 (389)
106 PF05724 TPMT: Thiopurine S-me 98.0 8.4E-06 1.8E-10 65.1 4.5 76 1-84 55-152 (218)
107 PRK14903 16S rRNA methyltransf 97.9 3.7E-05 8E-10 67.5 7.9 77 5-89 262-368 (431)
108 PRK14904 16S rRNA methyltransf 97.9 4.2E-05 9.2E-10 67.4 8.3 76 5-89 275-379 (445)
109 PRK13943 protein-L-isoaspartat 97.9 3.6E-05 7.8E-10 64.9 7.0 68 6-86 106-179 (322)
110 PRK00517 prmA ribosomal protei 97.9 2.6E-05 5.6E-10 63.5 6.0 70 6-89 143-215 (250)
111 KOG1331 Predicted methyltransf 97.9 1.3E-05 2.8E-10 65.4 4.0 75 7-89 67-145 (293)
112 PRK01581 speE spermidine synth 97.9 4.5E-05 9.7E-10 65.0 7.1 76 5-87 174-268 (374)
113 TIGR03533 L3_gln_methyl protei 97.9 5.3E-05 1.2E-09 62.9 7.4 70 6-85 146-249 (284)
114 PRK04457 spermidine synthase; 97.8 4.1E-05 8.9E-10 62.8 6.4 75 6-88 91-178 (262)
115 PF08003 Methyltransf_9: Prote 97.8 8E-05 1.7E-09 61.7 7.5 76 5-88 138-220 (315)
116 TIGR00536 hemK_fam HemK family 97.8 6.2E-05 1.3E-09 62.5 7.0 71 6-85 139-242 (284)
117 PRK14901 16S rRNA methyltransf 97.8 8.5E-05 1.9E-09 65.3 8.2 74 6-87 278-384 (434)
118 PRK11805 N5-glutamine S-adenos 97.8 0.0001 2.2E-09 61.9 7.9 71 6-85 158-261 (307)
119 COG1352 CheR Methylase of chem 97.8 0.00012 2.5E-09 60.2 7.5 77 4-89 128-242 (268)
120 PHA03411 putative methyltransf 97.7 0.00013 2.9E-09 59.9 7.7 72 6-86 89-182 (279)
121 PRK03612 spermidine synthase; 97.7 8.6E-05 1.9E-09 66.7 7.2 74 6-87 322-415 (521)
122 TIGR00417 speE spermidine synt 97.7 0.00011 2.4E-09 60.5 7.2 75 5-86 96-185 (270)
123 PRK10901 16S rRNA methyltransf 97.7 0.00014 2.9E-09 63.9 8.0 75 6-88 269-373 (427)
124 TIGR00446 nop2p NOL1/NOP2/sun 97.7 0.00013 2.9E-09 59.9 7.5 75 6-88 97-200 (264)
125 KOG1269 SAM-dependent methyltr 97.7 4.4E-05 9.5E-10 65.3 4.5 76 6-89 134-217 (364)
126 PRK14902 16S rRNA methyltransf 97.6 0.0002 4.4E-09 63.1 7.8 74 5-87 275-379 (444)
127 PRK09328 N5-glutamine S-adenos 97.6 0.00024 5.3E-09 58.3 7.8 72 6-86 133-237 (275)
128 TIGR00563 rsmB ribosomal RNA s 97.6 0.00023 4.9E-09 62.5 7.5 77 5-89 262-370 (426)
129 COG0500 SmtA SAM-dependent met 97.6 0.0006 1.3E-08 49.3 8.7 78 6-91 73-159 (257)
130 PLN02366 spermidine synthase 97.5 0.00035 7.7E-09 58.6 7.8 75 5-86 115-205 (308)
131 KOG2899 Predicted methyltransf 97.5 0.00012 2.6E-09 58.5 4.4 76 7-85 84-207 (288)
132 COG4123 Predicted O-methyltran 97.5 0.00015 3.3E-09 58.6 5.0 73 6-86 69-169 (248)
133 smart00650 rADc Ribosomal RNA 97.5 0.00021 4.5E-09 54.6 4.9 75 2-86 32-112 (169)
134 COG1041 Predicted DNA modifica 97.5 0.00047 1E-08 58.2 7.3 77 5-89 219-312 (347)
135 PF00891 Methyltransf_2: O-met 97.5 0.00032 7E-09 56.6 6.3 72 7-90 126-202 (241)
136 TIGR03704 PrmC_rel_meth putati 97.4 0.0006 1.3E-08 55.6 7.4 73 6-86 111-215 (251)
137 PF03141 Methyltransf_29: Puta 97.4 5.5E-05 1.2E-09 66.3 1.2 44 42-86 173-218 (506)
138 PLN02781 Probable caffeoyl-CoA 97.4 0.00057 1.2E-08 55.1 6.7 76 5-86 93-177 (234)
139 PRK13168 rumA 23S rRNA m(5)U19 97.3 0.00073 1.6E-08 59.6 7.2 81 1-88 315-401 (443)
140 COG2521 Predicted archaeal met 97.3 0.00019 4.2E-09 57.1 3.0 77 3-87 154-245 (287)
141 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.00049 1.1E-08 64.0 6.1 75 6-88 562-657 (702)
142 PRK15128 23S rRNA m(5)C1962 me 97.3 0.0006 1.3E-08 59.2 6.0 78 5-87 243-339 (396)
143 PRK14966 unknown domain/N5-glu 97.2 0.0012 2.7E-08 57.3 7.6 73 5-85 275-379 (423)
144 PHA03412 putative methyltransf 97.2 0.0024 5.2E-08 51.4 8.5 70 5-83 76-159 (241)
145 PF01135 PCMT: Protein-L-isoas 97.1 0.00043 9.3E-09 54.9 3.4 68 5-85 97-170 (209)
146 KOG1271 Methyltransferases [Ge 97.1 0.0014 3E-08 50.5 5.8 75 7-89 93-183 (227)
147 PRK01544 bifunctional N5-gluta 97.1 0.0021 4.5E-08 57.7 7.5 72 5-85 162-267 (506)
148 COG4122 Predicted O-methyltran 97.1 0.0017 3.7E-08 51.7 6.2 73 5-87 84-166 (219)
149 PF02390 Methyltransf_4: Putat 97.0 0.0024 5.3E-08 50.1 6.8 80 6-90 42-136 (195)
150 PLN02823 spermine synthase 97.0 0.0023 5E-08 54.4 7.1 75 5-86 127-219 (336)
151 PRK03522 rumB 23S rRNA methylu 97.0 0.0021 4.5E-08 54.2 6.6 79 1-89 191-276 (315)
152 TIGR00479 rumA 23S rRNA (uraci 97.0 0.0014 3E-08 57.6 5.5 81 1-88 310-397 (431)
153 COG4627 Uncharacterized protei 97.0 0.00033 7.1E-09 52.4 1.3 44 42-86 39-85 (185)
154 COG2242 CobL Precorrin-6B meth 96.9 0.006 1.3E-07 47.2 7.9 75 3-88 56-136 (187)
155 PRK00536 speE spermidine synth 96.9 0.004 8.8E-08 51.0 7.3 69 3-86 92-170 (262)
156 KOG3178 Hydroxyindole-O-methyl 96.9 0.0034 7.4E-08 52.9 7.0 77 4-91 198-279 (342)
157 COG1092 Predicted SAM-dependen 96.9 0.0012 2.6E-08 57.0 4.2 76 7-89 242-338 (393)
158 COG0421 SpeE Spermidine syntha 96.8 0.0046 1E-07 51.2 6.6 79 5-93 100-195 (282)
159 COG2264 PrmA Ribosomal protein 96.7 0.0035 7.6E-08 52.2 5.7 73 6-89 186-265 (300)
160 PF01564 Spermine_synth: Sperm 96.6 0.0039 8.5E-08 50.7 5.0 77 5-87 100-191 (246)
161 PF10672 Methyltrans_SAM: S-ad 96.6 0.002 4.3E-08 53.5 3.2 78 6-88 147-239 (286)
162 COG2518 Pcm Protein-L-isoaspar 96.6 0.0049 1.1E-07 48.6 5.2 72 1-85 90-167 (209)
163 PLN02589 caffeoyl-CoA O-methyl 96.5 0.0069 1.5E-07 49.3 6.0 74 5-85 104-188 (247)
164 PF01596 Methyltransf_3: O-met 96.5 0.0045 9.7E-08 49.0 4.6 80 4-87 69-155 (205)
165 COG0220 Predicted S-adenosylme 96.4 0.012 2.7E-07 47.2 6.9 80 7-91 74-168 (227)
166 PLN02476 O-methyltransferase 96.4 0.0065 1.4E-07 50.2 5.4 75 5-85 143-226 (278)
167 KOG3987 Uncharacterized conser 96.4 0.00078 1.7E-08 52.8 -0.3 74 1-85 130-205 (288)
168 PF06325 PrmA: Ribosomal prote 96.3 0.01 2.3E-07 49.5 6.1 72 6-89 185-261 (295)
169 PF03059 NAS: Nicotianamine sy 96.3 0.015 3.3E-07 48.0 6.7 75 6-88 147-231 (276)
170 PF06962 rRNA_methylase: Putat 96.1 0.019 4.1E-07 42.5 5.7 78 7-90 1-95 (140)
171 COG2813 RsmC 16S RNA G1207 met 96.1 0.056 1.2E-06 45.0 9.0 89 6-104 183-283 (300)
172 TIGR00478 tly hemolysin TlyA f 95.9 0.031 6.7E-07 44.9 6.9 73 2-85 94-169 (228)
173 COG2519 GCD14 tRNA(1-methylade 95.9 0.038 8.2E-07 44.8 7.3 72 5-89 119-197 (256)
174 PRK10909 rsmD 16S rRNA m(2)G96 95.9 0.028 6E-07 44.3 6.3 81 2-89 73-161 (199)
175 KOG1663 O-methyltransferase [S 95.8 0.034 7.4E-07 44.4 6.3 77 3-86 96-182 (237)
176 KOG1661 Protein-L-isoaspartate 95.7 0.03 6.6E-07 44.1 5.6 70 4-86 107-192 (237)
177 PF12147 Methyltransf_20: Puta 95.6 0.12 2.6E-06 42.9 9.1 78 5-87 161-249 (311)
178 PF06080 DUF938: Protein of un 95.6 0.015 3.2E-07 45.8 3.7 39 48-87 100-141 (204)
179 PF01170 UPF0020: Putative RNA 95.6 0.055 1.2E-06 41.8 6.8 65 7-79 63-143 (179)
180 PF02527 GidB: rRNA small subu 95.5 0.046 9.9E-07 42.5 6.1 69 6-86 73-147 (184)
181 TIGR00755 ksgA dimethyladenosi 95.4 0.045 9.7E-07 44.6 6.0 70 2-86 48-125 (253)
182 PRK00274 ksgA 16S ribosomal RN 95.3 0.017 3.7E-07 47.6 3.3 51 2-59 61-114 (272)
183 COG3963 Phospholipid N-methylt 95.3 0.09 2E-06 40.1 6.7 82 6-90 74-159 (194)
184 PRK11933 yebU rRNA (cytosine-C 95.2 0.085 1.8E-06 46.9 7.6 74 6-87 139-242 (470)
185 PF08704 GCD14: tRNA methyltra 95.2 0.097 2.1E-06 42.6 7.2 73 5-89 65-148 (247)
186 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.12 2.7E-06 37.0 7.1 79 5-90 14-92 (130)
187 PRK14896 ksgA 16S ribosomal RN 95.0 0.039 8.5E-07 45.1 4.5 52 2-62 48-103 (258)
188 PLN02672 methionine S-methyltr 95.0 0.09 2E-06 51.1 7.5 18 6-23 143-160 (1082)
189 TIGR02085 meth_trns_rumB 23S r 94.9 0.088 1.9E-06 45.5 6.7 78 1-88 251-335 (374)
190 PRK04338 N(2),N(2)-dimethylgua 94.9 0.059 1.3E-06 46.7 5.6 71 6-87 82-158 (382)
191 PF09445 Methyltransf_15: RNA 94.8 0.02 4.2E-07 43.6 2.2 34 1-34 17-57 (163)
192 PF02475 Met_10: Met-10+ like- 94.8 0.11 2.4E-06 40.9 6.5 69 4-84 124-199 (200)
193 PRK05031 tRNA (uracil-5-)-meth 94.8 0.034 7.4E-07 47.8 3.9 81 1-89 224-322 (362)
194 PF01269 Fibrillarin: Fibrilla 94.7 0.19 4.2E-06 40.0 7.6 75 6-86 99-177 (229)
195 PF03141 Methyltransf_29: Puta 94.6 0.035 7.5E-07 49.1 3.6 47 42-89 419-469 (506)
196 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.6 0.042 9E-07 44.9 3.8 38 50-88 158-200 (256)
197 PF06859 Bin3: Bicoid-interact 94.6 0.023 5.1E-07 40.1 2.0 36 50-86 1-43 (110)
198 COG2265 TrmA SAM-dependent met 94.4 0.05 1.1E-06 47.9 4.1 73 1-89 311-398 (432)
199 TIGR02143 trmA_only tRNA (urac 94.4 0.033 7.1E-07 47.8 2.8 34 1-34 215-254 (353)
200 PRK01544 bifunctional N5-gluta 94.1 0.13 2.8E-06 46.3 6.0 78 6-89 372-464 (506)
201 COG2520 Predicted methyltransf 93.7 0.25 5.4E-06 42.1 6.7 77 2-89 207-291 (341)
202 KOG2352 Predicted spermine/spe 93.6 0.26 5.7E-06 43.5 6.9 76 5-88 71-162 (482)
203 PF11968 DUF3321: Putative met 93.6 0.098 2.1E-06 41.5 3.9 46 40-86 91-148 (219)
204 PTZ00338 dimethyladenosine tra 93.6 0.089 1.9E-06 44.0 3.8 53 2-63 55-114 (294)
205 COG1063 Tdh Threonine dehydrog 93.3 0.38 8.3E-06 41.1 7.4 80 5-91 193-273 (350)
206 PF05958 tRNA_U5-meth_tr: tRNA 93.2 0.1 2.2E-06 44.7 3.8 35 1-35 214-254 (352)
207 COG4262 Predicted spermidine s 93.1 0.27 5.9E-06 42.1 5.9 77 3-87 311-407 (508)
208 COG2890 HemK Methylase of poly 93.0 0.16 3.5E-06 42.1 4.5 71 6-86 135-237 (280)
209 KOG2187 tRNA uracil-5-methyltr 92.9 0.32 6.9E-06 43.3 6.4 50 1-50 401-456 (534)
210 PRK11524 putative methyltransf 92.7 0.17 3.6E-06 42.0 4.2 42 45-87 22-80 (284)
211 PF13578 Methyltransf_24: Meth 92.6 0.079 1.7E-06 36.8 1.9 74 7-87 25-105 (106)
212 PRK13699 putative methylase; P 92.6 0.14 3E-06 41.1 3.6 40 45-87 15-72 (227)
213 KOG1709 Guanidinoacetate methy 92.5 0.4 8.6E-06 38.2 5.7 71 9-87 128-206 (271)
214 TIGR03439 methyl_EasF probable 92.4 0.55 1.2E-05 39.7 7.0 77 5-85 104-195 (319)
215 PRK04148 hypothetical protein; 92.3 0.17 3.7E-06 37.2 3.4 76 1-89 35-111 (134)
216 PF10294 Methyltransf_16: Puta 92.3 0.26 5.6E-06 37.8 4.5 77 5-86 69-155 (173)
217 COG1064 AdhP Zn-dependent alco 92.0 0.44 9.6E-06 40.5 5.9 73 4-89 189-261 (339)
218 TIGR00308 TRM1 tRNA(guanine-26 91.8 0.42 9E-06 41.4 5.6 74 5-89 69-149 (374)
219 PRK11783 rlmL 23S rRNA m(2)G24 91.6 0.77 1.7E-05 43.1 7.6 76 6-89 257-349 (702)
220 PF11899 DUF3419: Protein of u 91.3 0.35 7.6E-06 41.9 4.8 59 25-91 275-338 (380)
221 COG4798 Predicted methyltransf 91.3 0.34 7.5E-06 37.9 4.2 42 47-89 119-168 (238)
222 PF09243 Rsm22: Mitochondrial 91.0 0.74 1.6E-05 38.0 6.2 81 4-93 57-145 (274)
223 PF05185 PRMT5: PRMT5 arginine 90.8 0.45 9.8E-06 42.2 5.0 70 6-84 215-294 (448)
224 COG2263 Predicted RNA methylas 89.8 0.73 1.6E-05 35.9 4.8 61 6-77 69-138 (198)
225 PLN02668 indole-3-acetate carb 89.7 1.1 2.3E-05 39.0 6.3 25 39-63 151-175 (386)
226 PRK09424 pntA NAD(P) transhydr 89.2 2.1 4.5E-05 38.6 7.9 83 4-88 187-286 (509)
227 PF07942 N2227: N2227-like pro 88.9 0.44 9.6E-06 39.3 3.2 49 33-82 145-197 (270)
228 PRK09880 L-idonate 5-dehydroge 88.2 2.5 5.5E-05 35.6 7.6 73 6-88 195-267 (343)
229 KOG1500 Protein arginine N-met 88.2 0.8 1.7E-05 38.9 4.3 70 5-84 200-279 (517)
230 PF04672 Methyltransf_19: S-ad 88.0 1.8 3.9E-05 35.6 6.2 84 5-89 95-192 (267)
231 COG0144 Sun tRNA and rRNA cyto 88.0 2.4 5.2E-05 36.4 7.3 84 6-94 183-296 (355)
232 KOG1499 Protein arginine N-met 87.9 0.79 1.7E-05 38.9 4.2 71 5-84 83-164 (346)
233 COG0116 Predicted N6-adenine-s 87.8 0.83 1.8E-05 39.4 4.3 64 7-77 256-331 (381)
234 PRK11760 putative 23S rRNA C24 87.8 1.5 3.3E-05 37.4 5.8 75 2-89 230-306 (357)
235 PF01728 FtsJ: FtsJ-like methy 87.7 0.65 1.4E-05 35.5 3.4 82 6-93 49-145 (181)
236 cd08283 FDH_like_1 Glutathione 86.7 3.1 6.7E-05 35.8 7.3 79 7-87 211-306 (386)
237 KOG0024 Sorbitol dehydrogenase 86.6 3.7 8.1E-05 34.7 7.3 82 5-93 194-279 (354)
238 PRK00050 16S rRNA m(4)C1402 me 84.4 0.87 1.9E-05 38.1 2.7 60 6-70 45-113 (296)
239 TIGR00095 RNA methyltransferas 84.4 4.2 9.2E-05 31.5 6.5 77 6-86 73-158 (189)
240 PF03269 DUF268: Caenorhabditi 82.6 1.2 2.6E-05 33.8 2.5 38 48-86 61-110 (177)
241 COG0742 N6-adenine-specific me 82.4 2.7 5.8E-05 32.7 4.5 80 1-87 62-154 (187)
242 cd08254 hydroxyacyl_CoA_DH 6-h 82.2 7.1 0.00015 32.4 7.5 76 5-89 189-265 (338)
243 COG0357 GidB Predicted S-adeno 82.1 3.1 6.8E-05 33.1 4.9 67 7-84 93-165 (215)
244 KOG3420 Predicted RNA methylas 81.9 1.3 2.7E-05 33.2 2.4 54 5-60 71-124 (185)
245 PF03602 Cons_hypoth95: Conser 81.7 0.93 2E-05 35.1 1.8 82 2-87 62-153 (183)
246 PRK11727 23S rRNA mA1618 methy 80.3 3.2 7E-05 35.1 4.7 53 5-61 138-200 (321)
247 TIGR02822 adh_fam_2 zinc-bindi 79.3 11 0.00025 31.6 7.8 67 5-88 189-255 (329)
248 COG0293 FtsJ 23S rRNA methylas 78.6 9 0.0002 30.3 6.3 76 7-89 72-161 (205)
249 COG0030 KsgA Dimethyladenosine 78.5 2.8 6.1E-05 34.3 3.6 51 1-58 48-103 (259)
250 KOG3201 Uncharacterized conser 78.3 2.2 4.7E-05 32.6 2.7 84 6-90 55-143 (201)
251 TIGR03451 mycoS_dep_FDH mycoth 78.2 10 0.00022 32.2 7.2 76 7-89 203-278 (358)
252 PF02384 N6_Mtase: N-6 DNA Met 77.8 8.8 0.00019 31.9 6.6 75 5-86 77-182 (311)
253 COG4076 Predicted RNA methylas 76.1 5.8 0.00013 31.1 4.5 73 2-84 51-132 (252)
254 PF04989 CmcI: Cephalosporin h 74.7 11 0.00024 29.8 5.9 79 6-87 61-147 (206)
255 cd08232 idonate-5-DH L-idonate 73.9 18 0.0004 30.1 7.6 72 7-88 192-263 (339)
256 PF03492 Methyltransf_7: SAM d 72.8 2.3 4.9E-05 36.3 1.8 24 40-63 97-120 (334)
257 KOG2730 Methylase [General fun 72.5 3.9 8.5E-05 32.8 2.9 33 2-34 113-152 (263)
258 cd05278 FDH_like Formaldehyde 71.9 12 0.00027 31.1 6.1 75 6-87 193-267 (347)
259 cd05188 MDR Medium chain reduc 71.7 19 0.0004 28.5 6.9 78 4-89 157-234 (271)
260 cd08281 liver_ADH_like1 Zinc-d 71.7 15 0.00033 31.2 6.7 75 7-89 218-292 (371)
261 PF04816 DUF633: Family of unk 69.6 8.1 0.00018 30.5 4.2 74 5-89 21-103 (205)
262 PF08123 DOT1: Histone methyla 69.5 6.7 0.00015 31.0 3.7 75 4-84 65-155 (205)
263 cd08291 ETR_like_1 2-enoyl thi 69.3 28 0.00061 28.8 7.7 76 5-88 168-243 (324)
264 cd08293 PTGR2 Prostaglandin re 68.8 23 0.00049 29.6 7.1 71 7-87 182-254 (345)
265 TIGR02819 fdhA_non_GSH formald 68.7 25 0.00055 30.4 7.4 80 7-89 212-301 (393)
266 PF01555 N6_N4_Mtase: DNA meth 68.2 4.4 9.4E-05 31.6 2.4 24 65-89 35-58 (231)
267 cd08239 THR_DH_like L-threonin 67.9 24 0.00052 29.4 7.0 75 5-88 187-263 (339)
268 KOG1562 Spermidine synthase [A 67.1 17 0.00036 30.6 5.5 77 5-87 145-236 (337)
269 KOG2904 Predicted methyltransf 66.7 12 0.00027 31.0 4.7 46 6-57 173-229 (328)
270 cd08237 ribitol-5-phosphate_DH 66.6 20 0.00044 30.1 6.4 68 6-88 190-257 (341)
271 TIGR02987 met_A_Alw26 type II 65.2 22 0.00048 32.1 6.6 18 6-23 64-81 (524)
272 cd08230 glucose_DH Glucose deh 65.1 32 0.00069 29.0 7.2 73 5-89 196-271 (355)
273 KOG0820 Ribosomal RNA adenine 64.9 7.8 0.00017 32.1 3.2 47 3-58 78-131 (315)
274 TIGR00006 S-adenosyl-methyltra 64.7 7.7 0.00017 32.6 3.3 33 56-89 204-242 (305)
275 PF01189 Nol1_Nop2_Fmu: NOL1/N 64.3 8.7 0.00019 31.9 3.5 75 5-87 110-219 (283)
276 KOG2539 Mitochondrial/chloropl 64.0 30 0.00064 30.9 6.8 76 5-91 226-319 (491)
277 PF01861 DUF43: Protein of unk 63.6 22 0.00047 28.9 5.5 75 4-89 66-150 (243)
278 TIGR02825 B4_12hDH leukotriene 62.9 56 0.0012 27.0 8.3 74 5-88 163-238 (325)
279 cd08294 leukotriene_B4_DH_like 62.0 57 0.0012 26.8 8.1 73 5-87 168-241 (329)
280 cd08286 FDH_like_ADH2 formalde 61.6 25 0.00055 29.3 6.0 75 6-88 192-267 (345)
281 TIGR03366 HpnZ_proposed putati 61.1 38 0.00082 27.5 6.8 73 7-88 147-219 (280)
282 COG1189 Predicted rRNA methyla 60.6 22 0.00047 28.9 5.0 74 5-86 102-177 (245)
283 PF00398 RrnaAD: Ribosomal RNA 60.2 14 0.0003 30.1 4.0 67 2-77 49-122 (262)
284 PLN03154 putative allyl alcoho 59.5 63 0.0014 27.3 8.1 74 5-88 183-259 (348)
285 cd08243 quinone_oxidoreductase 58.2 62 0.0013 26.3 7.7 73 5-88 167-239 (320)
286 COG0275 Predicted S-adenosylme 57.8 11 0.00024 31.6 3.0 33 56-89 208-246 (314)
287 cd08233 butanediol_DH_like (2R 57.8 50 0.0011 27.7 7.2 74 7-88 199-273 (351)
288 cd08285 NADP_ADH NADP(H)-depen 57.7 53 0.0012 27.5 7.3 74 7-88 193-267 (351)
289 cd08261 Zn_ADH7 Alcohol dehydr 57.4 52 0.0011 27.3 7.2 77 5-88 183-259 (337)
290 COG1062 AdhC Zn-dependent alco 57.1 49 0.0011 28.4 6.7 79 5-91 210-289 (366)
291 PRK00050 16S rRNA m(4)C1402 me 56.5 13 0.00028 31.2 3.2 34 56-90 200-239 (296)
292 PRK10309 galactitol-1-phosphat 55.7 65 0.0014 26.9 7.6 74 7-88 187-261 (347)
293 cd08236 sugar_DH NAD(P)-depend 55.1 64 0.0014 26.8 7.4 73 7-87 186-258 (343)
294 cd08255 2-desacetyl-2-hydroxye 54.5 52 0.0011 26.3 6.6 69 7-89 124-192 (277)
295 PF01795 Methyltransf_5: MraW 54.3 12 0.00025 31.7 2.6 33 56-89 205-243 (310)
296 cd01842 SGNH_hydrolase_like_5 54.2 27 0.0006 27.0 4.4 44 46-91 46-102 (183)
297 TIGR00006 S-adenosyl-methyltra 54.1 18 0.00039 30.5 3.7 62 6-69 45-114 (305)
298 PF02153 PDH: Prephenate dehyd 53.8 18 0.00039 29.4 3.7 66 5-84 11-76 (258)
299 cd08278 benzyl_alcohol_DH Benz 52.9 63 0.0014 27.4 7.1 73 7-88 213-286 (365)
300 TIGR00561 pntA NAD(P) transhyd 52.7 24 0.00051 32.0 4.5 79 4-84 186-281 (511)
301 PLN02740 Alcohol dehydrogenase 51.9 64 0.0014 27.6 7.0 75 7-89 225-302 (381)
302 cd00401 AdoHcyase S-adenosyl-L 51.4 41 0.00088 29.6 5.6 71 4-93 224-295 (413)
303 TIGR01202 bchC 2-desacetyl-2-h 50.6 55 0.0012 27.1 6.2 62 7-88 171-232 (308)
304 PF02005 TRM: N2,N2-dimethylgu 50.5 34 0.00073 29.7 5.0 73 5-89 74-156 (377)
305 cd08238 sorbose_phosphate_red 50.0 53 0.0011 28.5 6.2 73 7-86 205-287 (410)
306 COG1889 NOP1 Fibrillarin-like 49.6 76 0.0017 25.3 6.2 76 5-86 100-179 (231)
307 cd08231 MDR_TM0436_like Hypoth 49.5 99 0.0022 26.0 7.7 74 7-88 204-281 (361)
308 PF14740 DUF4471: Domain of un 49.5 16 0.00035 30.5 2.7 33 48-86 220-253 (289)
309 cd08298 CAD2 Cinnamyl alcohol 48.4 1E+02 0.0022 25.3 7.6 67 5-88 191-257 (329)
310 PRK05396 tdh L-threonine 3-deh 47.7 72 0.0016 26.5 6.5 75 7-89 190-265 (341)
311 cd08295 double_bond_reductase_ 47.6 1.3E+02 0.0027 25.1 8.0 74 5-88 176-252 (338)
312 cd08265 Zn_ADH3 Alcohol dehydr 46.7 1E+02 0.0022 26.4 7.4 75 7-88 230-308 (384)
313 cd08234 threonine_DH_like L-th 45.9 94 0.002 25.6 6.9 73 7-89 186-259 (334)
314 cd08266 Zn_ADH_like1 Alcohol d 45.5 88 0.0019 25.5 6.7 77 4-88 190-266 (342)
315 cd05285 sorbitol_DH Sorbitol d 44.5 1.3E+02 0.0029 25.0 7.7 74 8-88 190-266 (343)
316 PLN02827 Alcohol dehydrogenase 44.4 85 0.0018 26.9 6.6 73 7-88 220-296 (378)
317 cd08263 Zn_ADH10 Alcohol dehyd 44.0 92 0.002 26.3 6.7 74 7-88 214-288 (367)
318 cd08242 MDR_like Medium chain 43.6 1E+02 0.0023 25.2 6.9 66 5-86 179-244 (319)
319 TIGR02818 adh_III_F_hyde S-(hy 43.5 65 0.0014 27.4 5.7 73 7-88 212-288 (368)
320 COG4017 Uncharacterized protei 43.2 34 0.00074 27.0 3.4 58 4-80 66-123 (254)
321 PRK07417 arogenate dehydrogena 43.0 48 0.001 27.2 4.6 67 3-83 21-87 (279)
322 PRK10754 quinone oxidoreductas 42.9 1.7E+02 0.0038 23.9 8.1 75 5-88 165-240 (327)
323 cd08296 CAD_like Cinnamyl alco 42.8 1.4E+02 0.0031 24.7 7.6 73 5-88 187-260 (333)
324 cd08279 Zn_ADH_class_III Class 42.3 1.1E+02 0.0025 25.7 7.0 74 7-88 209-283 (363)
325 PF03748 FliL: Flagellar basal 42.2 87 0.0019 20.9 5.2 51 155-207 48-98 (99)
326 cd08245 CAD Cinnamyl alcohol d 41.2 1.1E+02 0.0024 25.1 6.7 72 5-88 186-257 (330)
327 COG4301 Uncharacterized conser 40.3 1.4E+02 0.0029 24.8 6.5 77 6-85 107-191 (321)
328 cd05281 TDH Threonine dehydrog 39.6 99 0.0021 25.7 6.2 72 7-87 190-262 (341)
329 PRK05708 2-dehydropantoate 2-r 39.4 1.8E+02 0.0039 24.2 7.6 86 1-90 21-107 (305)
330 PRK07718 fliL flagellar basal 39.2 81 0.0018 23.2 4.9 51 155-207 91-141 (142)
331 COG0604 Qor NADPH:quinone redu 39.2 1.2E+02 0.0027 25.5 6.7 80 2-89 163-243 (326)
332 COG0686 Ald Alanine dehydrogen 39.1 41 0.00089 28.6 3.5 72 5-84 191-265 (371)
333 KOG2798 Putative trehalase [Ca 39.0 37 0.0008 28.9 3.3 35 49-84 258-293 (369)
334 TIGR01444 fkbM_fam methyltrans 38.3 21 0.00045 25.6 1.6 17 7-23 24-40 (143)
335 PRK11064 wecC UDP-N-acetyl-D-m 38.3 1.2E+02 0.0026 26.6 6.6 90 1-93 22-125 (415)
336 cd08289 MDR_yhfp_like Yhfp put 38.2 1.7E+02 0.0037 23.9 7.3 74 5-88 171-244 (326)
337 cd05284 arabinose_DH_like D-ar 38.2 1.5E+02 0.0031 24.6 6.9 74 6-88 193-267 (340)
338 PF05430 Methyltransf_30: S-ad 38.1 21 0.00046 25.7 1.6 39 49-89 49-92 (124)
339 cd05286 QOR2 Quinone oxidoredu 37.6 2.1E+02 0.0045 22.9 7.7 75 5-88 161-236 (320)
340 TIGR00692 tdh L-threonine 3-de 37.6 1.8E+02 0.0038 24.2 7.4 74 7-88 188-262 (340)
341 cd08300 alcohol_DH_class_III c 37.3 1.6E+02 0.0034 25.0 7.1 74 7-88 213-289 (368)
342 COG3897 Predicted methyltransf 36.9 1.3E+02 0.0028 23.9 5.7 75 6-92 103-184 (218)
343 KOG2915 tRNA(1-methyladenosine 36.8 1.3E+02 0.0027 25.2 5.9 68 6-85 131-208 (314)
344 TIGR03201 dearomat_had 6-hydro 36.2 1.8E+02 0.0039 24.3 7.3 77 5-89 190-274 (349)
345 cd08301 alcohol_DH_plants Plan 35.2 1.5E+02 0.0032 25.1 6.6 75 7-89 214-291 (369)
346 PF12641 Flavodoxin_3: Flavodo 35.0 1.2E+02 0.0026 22.8 5.3 43 48-91 37-79 (160)
347 PRK08177 short chain dehydroge 34.7 1E+02 0.0022 23.9 5.1 59 1-60 21-81 (225)
348 PRK08455 fliL flagellar basal 34.6 96 0.0021 24.0 4.8 51 155-207 131-181 (182)
349 PF03721 UDPG_MGDP_dh_N: UDP-g 34.5 27 0.00059 26.9 1.8 93 1-103 19-137 (185)
350 PF01795 Methyltransf_5: MraW 34.2 87 0.0019 26.5 4.8 50 6-56 45-99 (310)
351 PTZ00354 alcohol dehydrogenase 33.8 2.5E+02 0.0053 22.9 7.6 74 5-87 165-240 (334)
352 cd05288 PGDH Prostaglandin deh 33.8 2.5E+02 0.0055 22.9 7.7 74 5-87 170-244 (329)
353 PRK09260 3-hydroxybutyryl-CoA 33.5 99 0.0021 25.4 5.1 22 2-23 21-42 (288)
354 TIGR02817 adh_fam_1 zinc-bindi 33.1 2.3E+02 0.005 23.2 7.3 73 5-86 174-246 (336)
355 cd05283 CAD1 Cinnamyl alcohol 32.8 2E+02 0.0044 23.8 7.0 72 5-88 193-264 (337)
356 cd08274 MDR9 Medium chain dehy 32.6 2.7E+02 0.0058 23.0 7.7 71 5-87 202-273 (350)
357 cd08235 iditol_2_DH_like L-idi 32.5 2.1E+02 0.0045 23.6 7.0 75 6-87 190-265 (343)
358 PLN02586 probable cinnamyl alc 32.2 1.4E+02 0.0031 25.3 6.0 72 5-88 207-279 (360)
359 cd08260 Zn_ADH6 Alcohol dehydr 31.8 2E+02 0.0044 23.8 6.8 75 5-88 189-265 (345)
360 cd08244 MDR_enoyl_red Possible 31.5 2.8E+02 0.0061 22.4 8.1 75 5-88 167-242 (324)
361 cd08240 6_hydroxyhexanoate_dh_ 31.1 2.2E+02 0.0049 23.6 7.0 73 7-88 202-275 (350)
362 cd08282 PFDH_like Pseudomonas 31.0 1.9E+02 0.0041 24.6 6.6 78 7-88 203-286 (375)
363 KOG2352 Predicted spermine/spe 30.9 53 0.0011 29.5 3.1 78 5-85 319-414 (482)
364 PF11599 AviRa: RRNA methyltra 30.8 36 0.00078 27.4 1.9 20 4-23 76-95 (246)
365 cd05289 MDR_like_2 alcohol deh 30.6 2.8E+02 0.006 22.1 8.1 71 5-88 169-239 (309)
366 PRK12785 fliL flagellar basal 30.4 1.3E+02 0.0029 22.7 4.9 51 155-207 115-165 (166)
367 cd08268 MDR2 Medium chain dehy 30.3 2.4E+02 0.0052 22.7 7.0 77 4-88 168-244 (328)
368 PRK05476 S-adenosyl-L-homocyst 30.1 1.3E+02 0.0028 26.7 5.4 71 4-93 234-305 (425)
369 KOG1596 Fibrillarin and relate 30.0 2.4E+02 0.0052 23.3 6.4 70 7-87 183-261 (317)
370 cd08284 FDH_like_2 Glutathione 29.9 2E+02 0.0042 23.8 6.4 76 6-89 193-268 (344)
371 PRK10083 putative oxidoreducta 29.9 3E+02 0.0065 22.6 7.6 73 7-89 188-261 (339)
372 PF05971 Methyltransf_10: Prot 29.7 1.6E+02 0.0035 24.8 5.7 52 7-61 128-188 (299)
373 cd08241 QOR1 Quinone oxidoredu 29.7 2.5E+02 0.0054 22.5 6.9 75 5-88 164-239 (323)
374 TIGR02824 quinone_pig3 putativ 29.6 2.6E+02 0.0057 22.4 7.1 75 5-88 164-239 (325)
375 cd08253 zeta_crystallin Zeta-c 28.6 3.1E+02 0.0066 21.9 7.5 76 4-88 168-244 (325)
376 cd08277 liver_alcohol_DH_like 28.5 2.2E+02 0.0048 24.0 6.6 73 7-88 211-287 (365)
377 cd08269 Zn_ADH9 Alcohol dehydr 28.1 3E+02 0.0066 22.1 7.2 73 8-88 157-230 (312)
378 PRK07502 cyclohexadienyl dehyd 27.8 1.6E+02 0.0034 24.4 5.4 67 6-85 32-98 (307)
379 PF14258 DUF4350: Domain of un 27.6 1.2E+02 0.0026 18.9 3.7 41 42-86 29-69 (70)
380 cd08252 AL_MDR Arginate lyase 27.5 3.3E+02 0.007 22.3 7.3 73 6-87 176-248 (336)
381 COG3510 CmcI Cephalosporin hyd 27.3 97 0.0021 24.6 3.6 81 6-88 98-181 (237)
382 KOG0822 Protein kinase inhibit 27.3 42 0.00092 30.6 1.9 73 7-88 397-479 (649)
383 cd08287 FDH_like_ADH3 formalde 27.3 3.4E+02 0.0074 22.4 7.4 73 7-87 195-268 (345)
384 PLN02178 cinnamyl-alcohol dehy 26.9 2.2E+02 0.0047 24.4 6.2 72 5-88 202-274 (375)
385 TIGR03026 NDP-sugDHase nucleot 26.7 2.8E+02 0.0061 24.1 7.0 23 1-23 19-41 (411)
386 cd08251 polyketide_synthase po 26.5 3.3E+02 0.0071 21.6 8.2 75 5-87 145-219 (303)
387 cd05279 Zn_ADH1 Liver alcohol 26.3 3E+02 0.0064 23.2 7.0 75 7-88 210-286 (365)
388 cd08292 ETR_like_2 2-enoyl thi 25.7 3.6E+02 0.0079 21.8 7.3 75 5-88 164-239 (324)
389 PRK08293 3-hydroxybutyryl-CoA 24.8 1.3E+02 0.0029 24.6 4.4 22 2-23 23-44 (287)
390 cd05280 MDR_yhdh_yhfp Yhdh and 24.7 3E+02 0.0065 22.3 6.6 74 5-88 171-244 (325)
391 COG0275 Predicted S-adenosylme 24.3 1.2E+02 0.0026 25.6 3.9 51 5-57 48-103 (314)
392 cd08276 MDR7 Medium chain dehy 24.1 3.9E+02 0.0085 21.6 7.6 75 5-88 184-260 (336)
393 KOG3191 Predicted N6-DNA-methy 24.0 1.3E+02 0.0029 23.6 3.8 76 5-89 68-170 (209)
394 PRK09489 rsmC 16S ribosomal RN 23.8 96 0.0021 26.5 3.4 42 49-91 75-116 (342)
395 COG5499 Predicted transcriptio 23.8 1.5E+02 0.0033 21.0 3.8 42 151-193 73-114 (120)
396 cd08297 CAD3 Cinnamyl alcohol 23.6 4.2E+02 0.009 21.8 7.4 76 5-88 190-266 (341)
397 cd08270 MDR4 Medium chain dehy 23.6 3.9E+02 0.0084 21.4 8.0 67 5-88 157-223 (305)
398 TIGR00872 gnd_rel 6-phosphoglu 23.4 1.9E+02 0.0042 23.9 5.2 71 2-84 20-90 (298)
399 cd05276 p53_inducible_oxidored 22.9 3.7E+02 0.008 21.4 6.8 76 4-88 163-239 (323)
400 PRK01706 S-adenosylmethionine 22.8 98 0.0021 22.3 2.8 36 42-81 70-106 (123)
401 COG2384 Predicted SAM-dependen 22.8 1.4E+02 0.0029 24.1 3.8 64 5-77 40-111 (226)
402 KOG1122 tRNA and rRNA cytosine 22.2 4.3E+02 0.0094 23.6 7.0 81 5-94 266-379 (460)
403 cd08256 Zn_ADH2 Alcohol dehydr 22.1 4.3E+02 0.0093 21.9 7.1 74 6-87 200-274 (350)
404 PF11899 DUF3419: Protein of u 22.0 80 0.0017 27.5 2.6 21 2-22 54-74 (380)
405 PF04445 SAM_MT: Putative SAM- 21.8 47 0.001 26.8 1.1 53 2-60 94-161 (234)
406 COG5379 BtaA S-adenosylmethion 21.7 2.2E+02 0.0047 24.3 4.9 45 47-92 324-371 (414)
407 TIGR03330 SAM_DCase_Bsu S-aden 21.3 1.1E+02 0.0024 21.6 2.8 37 42-82 67-104 (112)
408 COG1867 TRM1 N2,N2-dimethylgua 21.2 1.3E+02 0.0027 26.2 3.6 71 7-89 78-156 (380)
409 PRK06853 indolepyruvate oxidor 21.1 1.5E+02 0.0033 22.8 3.9 31 48-86 66-96 (197)
410 TIGR00745 apbA_panE 2-dehydrop 21.0 4.3E+02 0.0093 21.2 6.8 85 1-90 10-96 (293)
411 cd05282 ETR_like 2-enoyl thioe 20.9 4.5E+02 0.0098 21.2 7.0 75 5-88 163-238 (323)
412 PRK15057 UDP-glucose 6-dehydro 20.9 4.5E+02 0.0098 22.8 7.1 19 5-23 22-40 (388)
413 PLN02514 cinnamyl-alcohol dehy 20.7 3.8E+02 0.0081 22.6 6.5 73 5-88 204-276 (357)
414 cd08246 crotonyl_coA_red croto 20.3 5.4E+02 0.012 21.8 8.1 75 5-88 218-316 (393)
415 KOG1253 tRNA methyltransferase 20.2 1.3E+02 0.0028 27.2 3.5 78 4-89 133-218 (525)
No 1
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=226.63 Aligned_cols=209 Identities=37% Similarity=0.640 Sum_probs=179.4
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
+|.++++|+|+|+|+.||+.|++++++++......|..+++.++--+++|+|||+++||+||||.+.+++++.|+||++|
T Consensus 51 iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 51 IAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDG 130 (261)
T ss_pred HHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence 47889999999999999999999999998888777877777777667999999999999999999999999999999677
Q ss_pred eEEEEEeCCC-CCcChHHHHhcccccccccccccc-chhHHHHcccccCCCCCCCCCCCCCCCCCcceeEEEeeCHHHHH
Q 035840 81 GVIAAWTYTM-PEINESVGAVFKPFDTVDCEPFWE-PQRKLVDNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVMDLDNYF 158 (213)
Q Consensus 81 G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~t~~~~~ 158 (213)
|.+++|+|++ ....++...++.+++.+ .+|||. +.+.++.++|++++|||..+....-..+. .+.+.+..++++|.
T Consensus 131 g~iavW~Y~dd~v~~pE~dsv~~r~~~~-~~p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~-~l~~~~~lsl~~F~ 208 (261)
T KOG3010|consen 131 GLIAVWNYNDDFVDWPEFDSVMLRLYDS-TLPYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPK-TLEIPHTLSLEGFS 208 (261)
T ss_pred CEEEEEEccCCCcCCHHHHHHHHHHhhc-cCchhhhHHHHhhccccccccccccccCCCCCCCce-eehhhHHHHHHHHH
Confidence 7999999995 44478999999888763 678864 66777788999999999887532111132 67788899999999
Q ss_pred HHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEEEeeeC
Q 035840 159 TFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLRIGQVG 212 (213)
Q Consensus 159 ~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
++++|||.+..+.+.+.+.+.+.+..++++.|+... ....+.|+.++..|+++
T Consensus 209 ~~~rsws~~~~akek~~e~i~~~~I~e~~~~~~~~~-~~~~V~y~tf~~~gk~~ 261 (261)
T KOG3010|consen 209 GFLRSWSAYKEAKEKGLELIADIFIPEFEEAWGEDN-LVKTVVYSTFMLLGKVR 261 (261)
T ss_pred HHHhCcHHHHHHHhcChHHHHHHHHHHHHhhccccc-ceeEEEeeeeeeecccC
Confidence 999999999999999999999989999999999985 46799999999999875
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=7.5e-19 Score=140.55 Aligned_cols=79 Identities=28% Similarity=0.389 Sum_probs=73.1
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
++|+|+|+|++||+.|+++ .+++|++++| +++||+|+|||+|+++++++++ |++++|+|++||||
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA-------e~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK- 147 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA-------ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK- 147 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCccceEEEEech-------hhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-
Confidence 7999999999999999984 2388999999 9999999999999999999999 99999999999999
Q ss_pred CCeEEEEEeCCCCC
Q 035840 79 PNGVIAAWTYTMPE 92 (213)
Q Consensus 79 pgG~l~~~~~~~~~ 92 (213)
|||++++.....|.
T Consensus 148 pgG~~~vle~~~p~ 161 (238)
T COG2226 148 PGGRLLVLEFSKPD 161 (238)
T ss_pred CCeEEEEEEcCCCC
Confidence 99999988887663
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=3.6e-17 Score=131.59 Aligned_cols=90 Identities=29% Similarity=0.360 Sum_probs=68.4
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
.++|+|+|+|++|++.|+++ .+++++++++ +++|+++++||+|++++++|.+ |+.++++|++||||
T Consensus 72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-------~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 72 NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-------EDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK 144 (233)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-------TB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE
T ss_pred ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-------HHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC
Confidence 35999999999999999973 4789999999 8999999999999999999988 99999999999999
Q ss_pred CCCeEEEEEeCCCCCcChHHHHhccc
Q 035840 78 KPNGVIAAWTYTMPEINESVGAVFKP 103 (213)
Q Consensus 78 ~pgG~l~~~~~~~~~~~~~~~~~~~~ 103 (213)
|||+|++.++..|.. +.+..+|.-
T Consensus 145 -PGG~l~ile~~~p~~-~~~~~~~~~ 168 (233)
T PF01209_consen 145 -PGGRLVILEFSKPRN-PLLRALYKF 168 (233)
T ss_dssp -EEEEEEEEEEEB-SS-HHHHHHHHH
T ss_pred -CCeEEEEeeccCCCC-chhhceeee
Confidence 999999998876642 344444443
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.66 E-value=3.3e-15 Score=121.59 Aligned_cols=187 Identities=16% Similarity=0.240 Sum_probs=116.2
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCC
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKP 79 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~p 79 (213)
+..+.+|+|+|+|+.|++.|++. +...+.++++ +.+|+++++||+|+++.++||+ |+..++.++.|+|| |
T Consensus 61 ~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-------~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~ 132 (251)
T PRK10258 61 RERGSQVTALDLSPPMLAQARQKDAADHYLAGDI-------ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-P 132 (251)
T ss_pred HHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc-------ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-C
Confidence 34568999999999999999985 4456777777 8888999999999999999999 99999999999999 9
Q ss_pred CeEEEEEeCCCCCcChHHHHhccccccc-cccccccchhHHHHcccccCCCCCCCCCCCCCCCCCcceeEEEeeCHHHHH
Q 035840 80 NGVIAAWTYTMPEINESVGAVFKPFDTV-DCEPFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVMDLDNYF 158 (213)
Q Consensus 80 gG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~t~~~~~ 158 (213)
||.|++.+.+...+ +++.+.+...... ...++... .. +...+...+ +. +. . .......-+..+++
T Consensus 133 gG~l~~~~~~~~~~-~el~~~~~~~~~~~~~~~~~~~-~~-l~~~l~~~~--~~-~~------~--~~~~~~f~~~~~~l 198 (251)
T PRK10258 133 GGVVAFTTLVQGSL-PELHQAWQAVDERPHANRFLPP-DA-IEQALNGWR--YQ-HH------I--QPITLWFDDALSAM 198 (251)
T ss_pred CeEEEEEeCCCCch-HHHHHHHHHhccCCccccCCCH-HH-HHHHHHhCC--ce-ee------e--eEEEEECCCHHHHH
Confidence 99999887775443 3444443322110 01112211 11 112222221 11 00 0 11222344566666
Q ss_pred HHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEEEeee
Q 035840 159 TFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLRIGQV 211 (213)
Q Consensus 159 ~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
..++..+.-......++..+......++.+.|...+ +.+.++|.+....++|
T Consensus 199 ~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~lty~v~~~~~~~ 250 (251)
T PRK10258 199 RSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQ-GRYPLTYHLFLGVIER 250 (251)
T ss_pred HHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhccccC-CCcceEEEEEEEEEEc
Confidence 666655443322112233344434455666676532 3678999988876665
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=2.6e-16 Score=108.33 Aligned_cols=76 Identities=28% Similarity=0.303 Sum_probs=65.3
Q ss_pred ccc-CCeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHh
Q 035840 2 AKI-YKNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVL 76 (213)
Q Consensus 2 a~~-~~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvL 76 (213)
+++ ..+|+|+|+|++|++.|++. .++++..+++ +++|+++++||+|++..++||+ ++.++++|+.|+|
T Consensus 15 ~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~-------~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvL 87 (95)
T PF08241_consen 15 AKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA-------EDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVL 87 (95)
T ss_dssp HHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT-------TSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHE
T ss_pred HhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH-------HhCccccccccccccccceeeccCHHHHHHHHHHHc
Confidence 345 78999999999999999983 4566888877 8899999999999999999999 9999999999999
Q ss_pred cCCCeEEEE
Q 035840 77 KKPNGVIAA 85 (213)
Q Consensus 77 k~pgG~l~~ 85 (213)
| |||.++|
T Consensus 88 k-~gG~l~~ 95 (95)
T PF08241_consen 88 K-PGGRLVI 95 (95)
T ss_dssp E-EEEEEEE
T ss_pred C-cCeEEeC
Confidence 9 9999875
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=6.4e-15 Score=120.25 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+|+|+|+.|++.|++. ++++..+++ ++++ ++++||+|++..++||+ |+.+++++++++|| |||.+
T Consensus 53 ~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~-------~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l 122 (255)
T PRK14103 53 GAVIEALDSSPEMVAAARER-GVDARTGDV-------RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWI 122 (255)
T ss_pred CCEEEEEECCHHHHHHHHhc-CCcEEEcCh-------hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEE
Confidence 45899999999999999875 688888877 6664 56789999999999999 99999999999999 99999
Q ss_pred EEEeCCCCCc--ChHHHHhc--cccc---ccc-cc-ccccchhHHHHcccccCCCCCCCCCCCCCCCCCcceeEEEee-C
Q 035840 84 AAWTYTMPEI--NESVGAVF--KPFD---TVD-CE-PFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVM-D 153 (213)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~~--~~~~---~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-t 153 (213)
++...+.... ......+. ..+. ... .. +........+.+.+.+.+|...... . .....+ .
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~---------~-~~~~~~~~ 192 (255)
T PRK14103 123 AVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE---------T-TYVHQLTG 192 (255)
T ss_pred EEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe---------e-eeeeeCCC
Confidence 8764432111 11111111 1111 000 00 0000111222334555543211110 1 111122 2
Q ss_pred HHHHHHHHhhhh---HHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEEEeeeCC
Q 035840 154 LDNYFTFIRSCS---GYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLRIGQVGN 213 (213)
Q Consensus 154 ~~~~~~~l~s~s---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
.+.+.+++...+ ....+.++..+.+.+++.+.+++.+...+.+...+.|.-..++|+|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~a~~~~ 255 (255)
T PRK14103 193 EDPVLDWITGTALRPVRERLSDDSWEQFRAELIPLLREAYPPRADGTTFFPFRRVFVVARVGG 255 (255)
T ss_pred chhhhhhhhccchhhhhhhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEeeeccEEEEEEeCC
Confidence 455777775433 122333334455555577777777543222356778877888888874
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=1e-15 Score=116.49 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=67.3
Q ss_pred EEEeCCHHHHHHhhcC---------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 9 IATDTSPKQLEFAIKL---------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 9 ~gvD~S~~ml~~Ar~~---------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
+|+|+|++|++.|+++ .+++|.++++ +++|+++++||+|+++.++||+ |+..+++|++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~-------~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk- 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA-------IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK- 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech-------hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-
Confidence 5999999999999752 2578888888 8899999999999999999988 99999999999999
Q ss_pred CCeEEEEEeCCCC
Q 035840 79 PNGVIAAWTYTMP 91 (213)
Q Consensus 79 pgG~l~~~~~~~~ 91 (213)
|||.|++..+..+
T Consensus 73 pGG~l~i~d~~~~ 85 (160)
T PLN02232 73 PGSRVSILDFNKS 85 (160)
T ss_pred cCeEEEEEECCCC
Confidence 9999999888754
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.60 E-value=5.3e-15 Score=117.43 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC---------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cCChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL---------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WFDLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~---------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~d~~~~~~e~~r 74 (213)
-++|+++|+||.||+.|+++ +.+.|++++| |++||++++||+.|+++++. |.|++++++|++|
T Consensus 130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA-------E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYR 202 (296)
T KOG1540|consen 130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA-------EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYR 202 (296)
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-------ccCCCCCCcceeEEEecceecCCCHHHHHHHHHH
Confidence 47999999999999999873 2378999999 99999999999999999997 5599999999999
Q ss_pred HhcCCCeEEEEEeCCCCCcChHHHHhccccc
Q 035840 75 VLKKPNGVIAAWTYTMPEINESVGAVFKPFD 105 (213)
Q Consensus 75 vLk~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 105 (213)
||| |||+|.+..+.... ++.+..+|..|.
T Consensus 203 VLK-pGGrf~cLeFskv~-~~~l~~fy~~ys 231 (296)
T KOG1540|consen 203 VLK-PGGRFSCLEFSKVE-NEPLKWFYDQYS 231 (296)
T ss_pred hcC-CCcEEEEEEccccc-cHHHHHHHHhhh
Confidence 999 99999866554221 134555555443
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=8.5e-15 Score=119.95 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=70.5
Q ss_pred CeEEEEeCCHHHHHHhhcC---------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL---------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWV 75 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rv 75 (213)
++|+|+|+|++|++.|+++ +++++.++++ +++|+++++||+|+++.++|++ |+..+++|+.|+
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-------~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv 171 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-------TDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRV 171 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-------ccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHH
Confidence 5899999999999999753 3678888887 8899999999999999999999 999999999999
Q ss_pred hcCCCeEEEEEeCCCC
Q 035840 76 LKKPNGVIAAWTYTMP 91 (213)
Q Consensus 76 Lk~pgG~l~~~~~~~~ 91 (213)
|| |||.|++..+..+
T Consensus 172 Lk-pGG~l~i~d~~~~ 186 (261)
T PLN02233 172 LK-PGSRVSILDFNKS 186 (261)
T ss_pred cC-cCcEEEEEECCCC
Confidence 99 9999999887754
No 10
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=2e-13 Score=111.53 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=64.7
Q ss_pred CCeEEEEeCCHHHHHHhhcC-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIKL-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~ 82 (213)
..+|+|+|+|+.|++.|++. +++.+..+++ +++. ++++||+|+++.++||+ |+..+++++.++|| |||.
T Consensus 55 ~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~-------~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~ 125 (258)
T PRK01683 55 AARITGIDSSPAMLAEARSRLPDCQFVEADI-------ASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGV 125 (258)
T ss_pred CCEEEEEECCHHHHHHHHHhCCCCeEEECch-------hccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcE
Confidence 36899999999999999985 6788888877 5553 45689999999999999 99999999999999 9999
Q ss_pred EEEEe
Q 035840 83 IAAWT 87 (213)
Q Consensus 83 l~~~~ 87 (213)
+++..
T Consensus 126 ~~~~~ 130 (258)
T PRK01683 126 LAVQM 130 (258)
T ss_pred EEEEC
Confidence 98753
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.52 E-value=6.8e-14 Score=118.74 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHh
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVL 76 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvL 76 (213)
..+|+|+|+|+.|++.|++. ++++|.++++ .++|+++++||+|++..++|++ |+.+++++++|+|
T Consensus 141 g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-------~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 141 GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-------LNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-------ccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 46999999999999998862 3688888888 7889999999999999999877 9999999999999
Q ss_pred cCCCeEEEEEeCC
Q 035840 77 KKPNGVIAAWTYT 89 (213)
Q Consensus 77 k~pgG~l~~~~~~ 89 (213)
| |||.|++.++.
T Consensus 214 k-pGG~lvi~~~~ 225 (340)
T PLN02244 214 A-PGGRIIIVTWC 225 (340)
T ss_pred C-CCcEEEEEEec
Confidence 9 99999887654
No 12
>PRK08317 hypothetical protein; Provisional
Probab=99.48 E-value=2.2e-12 Score=103.40 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=66.8
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~p 79 (213)
.+|+|+|+|+.|++.|++. +++++..+++ +..++++++||+|++..+++++ |+..+++++.++|| |
T Consensus 45 ~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-------~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~ 116 (241)
T PRK08317 45 GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-------DGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR-P 116 (241)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-------ccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhc-C
Confidence 5899999999999999874 4677888776 6777888999999999999988 99999999999999 9
Q ss_pred CeEEEEEeCC
Q 035840 80 NGVIAAWTYT 89 (213)
Q Consensus 80 gG~l~~~~~~ 89 (213)
||.+++....
T Consensus 117 gG~l~~~~~~ 126 (241)
T PRK08317 117 GGRVVVLDTD 126 (241)
T ss_pred CcEEEEEecC
Confidence 9999877643
No 13
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.44 E-value=8.1e-13 Score=102.76 Aligned_cols=189 Identities=15% Similarity=0.197 Sum_probs=119.2
Q ss_pred CCeEEEEeCCHHHHHHhhc-CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIK-LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~-~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~ 82 (213)
.+.|+|+|-|++||+.|++ .++++|..+|+ .+| -+...+|+++++.+|||+ |+.+.|..+...|. |||+
T Consensus 54 ~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl-------~~w-~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~ 124 (257)
T COG4106 54 DAVITGIDSSPAMLAKAAQRLPDATFEEADL-------RTW-KPEQPTDLLFANAVLQWLPDHPELLPRLVSQLA-PGGV 124 (257)
T ss_pred CCeEeeccCCHHHHHHHHHhCCCCceecccH-------hhc-CCCCccchhhhhhhhhhccccHHHHHHHHHhhC-CCce
Confidence 4689999999999999987 48999999887 777 466779999999999999 99999999999999 9999
Q ss_pred EEEEeCCCCC--cChHHHHhccccccc-cccc---ccc---chhHHHHcccccCCCCCCCCCCCCCCCCCcceeEEEeeC
Q 035840 83 IAAWTYTMPE--INESVGAVFKPFDTV-DCEP---FWE---PQRKLVDNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVMD 153 (213)
Q Consensus 83 l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~---~~~---~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~t 153 (213)
|++..-+... ....+.++.+.-... .++. ... +...+ .+.+... -.+|+ .|.+ ......-+
T Consensus 125 LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Y-y~lLa~~---~~rvD-iW~T-----~Y~h~l~~ 194 (257)
T COG4106 125 LAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAY-YELLAPL---ACRVD-IWHT-----TYYHQLPG 194 (257)
T ss_pred EEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHH-HHHhCcc---cceee-eeee-----eccccCCC
Confidence 9987443221 123344433321110 0110 000 11111 1222222 12221 1111 11222345
Q ss_pred HHHHHHHHhhhhHHH---HHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEEEeeeC
Q 035840 154 LDNYFTFIRSCSGYQ---TAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLRIGQVG 212 (213)
Q Consensus 154 ~~~~~~~l~s~s~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
.+.++++++...... .+.++....+.+...+.|.+++.....+++-+.|+=..++|+|+
T Consensus 195 a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 195 ADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred ccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 677777777643322 23233334444557788888887766568889999888888876
No 14
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.38 E-value=1.4e-11 Score=98.77 Aligned_cols=178 Identities=18% Similarity=0.243 Sum_probs=110.6
Q ss_pred CeEEEEeCCHHHHHHhhcC--CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCeE
Q 035840 6 KNVIATDTSPKQLEFAIKL--PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~ 82 (213)
.+|+|+|+|+.|+..+++. +++++..+++ ++.++++++||+|++..++||+ |+..++.++.++|| |||.
T Consensus 59 ~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~ 130 (240)
T TIGR02072 59 AEFIALDISAGMLAQAKTKLSENVQFICGDA-------EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGL 130 (240)
T ss_pred CcEEEEeChHHHHHHHHHhcCCCCeEEecch-------hhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcE
Confidence 4689999999999999874 4677888777 7788888999999999999999 99999999999999 9999
Q ss_pred EEEEeCCCCCcChHHHHhccccccccccccccchhHHHHcccccCCCCCCCCCCCCCCCCCcceeEEEeeCHHHHHHHHh
Q 035840 83 IAAWTYTMPEINESVGAVFKPFDTVDCEPFWEPQRKLVDNKYMSIDFPFEPVDGVDNTGPFDQFVLEKVMDLDNYFTFIR 162 (213)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~t~~~~~~~l~ 162 (213)
+++.......+ ..+...+.... .++... ..+.+.+... |..+... . ........+...+..+++
T Consensus 131 l~~~~~~~~~~-~~~~~~~~~~~----~~~~~~--~~~~~~l~~~---f~~~~~~----~--~~~~~~~~~~~~~~~~l~ 194 (240)
T TIGR02072 131 LAFSTFGPGTL-HELRQSFGQHG----LRYLSL--DELKALLKNS---FELLTLE----E--ELITLSFDDPLDVLRHLK 194 (240)
T ss_pred EEEEeCCccCH-HHHHHHHHHhc----cCCCCH--HHHHHHHHHh---cCCcEEE----E--EEEEEeCCCHHHHHHHHH
Confidence 98876654433 22222222110 112211 1111122221 2211100 0 111122345677777777
Q ss_pred hhhHHHHHHH-hCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEEEeee
Q 035840 163 SCSGYQTAKD-KGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLRIGQV 211 (213)
Q Consensus 163 s~s~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
..+....... ..++.+.+ +.+.+.+.+... .+...|.+...+|+|
T Consensus 195 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---gi~~~~~~~~~~~~k 240 (240)
T TIGR02072 195 KTGANGLSSGRTSRKQLKA-FLERYEQEFQPD---GLPLTYHVVYGIAKK 240 (240)
T ss_pred HhccCcCCCCCCCHHHHHH-HHHHHHHhhcCC---CceeEEEEEEEEEEC
Confidence 6544322111 23233333 666666666552 378899999888876
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=105.03 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=58.7
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCC
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pg 80 (213)
.+|+|+|+|++|++.|++. ..+.++++ +++|+++++||+|++++++||+ |++++++|++|+|| |.
T Consensus 75 ~~v~gvD~S~~Ml~~a~~~--~~~~~~d~-------~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~ 140 (226)
T PRK05785 75 YYVVALDYAENMLKMNLVA--DDKVVGSF-------EALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ 140 (226)
T ss_pred CEEEEECCCHHHHHHHHhc--cceEEech-------hhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc
Confidence 6999999999999999975 24566666 8899999999999999999988 99999999999999 84
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=1.2e-11 Score=101.44 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk 77 (213)
..+|+|+|+|+.|++.|+++ +++.+..+++ .+.|+++++||+|++..+++++ |+..++++++|+||
T Consensus 75 ~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~-------~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 75 GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI-------LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLK 147 (263)
T ss_pred CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc-------ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcC
Confidence 34999999999999999974 3577888777 6778899999999998887654 88999999999999
Q ss_pred CCCeEEEEEeCCC
Q 035840 78 KPNGVIAAWTYTM 90 (213)
Q Consensus 78 ~pgG~l~~~~~~~ 90 (213)
|||.|++..+..
T Consensus 148 -PGG~lvi~d~~~ 159 (263)
T PTZ00098 148 -PNGILLITDYCA 159 (263)
T ss_pred -CCcEEEEEEecc
Confidence 999999877643
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.35 E-value=1.3e-12 Score=109.75 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=70.3
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVK 73 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~ 73 (213)
|+.+.+|+|+|+|+.|++.|+++ .+++|.++++ +++++++++||+|++..++|++ |+..+++++.
T Consensus 150 a~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da-------e~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~ 222 (322)
T PLN02396 150 ARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA-------EKLADEGRKFDAVLSLEVIEHVANPAEFCKSLS 222 (322)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH-------HHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHH
Confidence 55677999999999999999863 2577888777 7888888899999999999988 9999999999
Q ss_pred HHhcCCCeEEEEEeCC
Q 035840 74 WVLKKPNGVIAAWTYT 89 (213)
Q Consensus 74 rvLk~pgG~l~~~~~~ 89 (213)
|+|| |||.+++...+
T Consensus 223 r~Lk-PGG~liist~n 237 (322)
T PLN02396 223 ALTI-PNGATVLSTIN 237 (322)
T ss_pred HHcC-CCcEEEEEECC
Confidence 9999 99999887655
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=2.2e-12 Score=105.35 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=68.5
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccC-CCCCCceeeeeechhhccC-ChhHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWF-DLPQFYKQ 71 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~-d~~~~~~e 71 (213)
|+....+|+|+|+|+.|++.|++. ++++++++++ +++ ++.+++||+|++..++||+ |+..++++
T Consensus 62 la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~-------~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~ 134 (255)
T PRK11036 62 LAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA-------QDIAQHLETPVDLILFHAVLEWVADPKSVLQT 134 (255)
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-------HHHhhhcCCCCCEEEehhHHHhhCCHHHHHHH
Confidence 356678999999999999999873 3577888777 554 3567899999999999999 99999999
Q ss_pred HHHHhcCCCeEEEEEeCC
Q 035840 72 VKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 72 ~~rvLk~pgG~l~~~~~~ 89 (213)
+.|+|| |||.|++..++
T Consensus 135 ~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 135 LWSVLR-PGGALSLMFYN 151 (255)
T ss_pred HHHHcC-CCeEEEEEEEC
Confidence 999999 99999876555
No 19
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=8.5e-12 Score=96.46 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCeEEEEeCCHHHHHHhhc------CCCce-EEecCCCCcchhhccCC-CCCCceeeeeechhhccC-ChhHHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIK------LPNIR-YQLTPPTMSITELEQNV-ATQSSVDLVTIAAALHWF-DLPQFYKQVKWV 75 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~~~v~-~~~~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rv 75 (213)
...|+++||+|.|-+.|.+ ..++. |+++++ |++| ++|+|+|.|++..+++-+ |+.+.+.|+.|+
T Consensus 99 ~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g-------e~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rl 171 (252)
T KOG4300|consen 99 INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG-------ENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRL 171 (252)
T ss_pred CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech-------hcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHh
Confidence 4589999999999999887 25666 888888 7887 899999999999999988 999999999999
Q ss_pred hcCCCeEEEEEeCCCC
Q 035840 76 LKKPNGVIAAWTYTMP 91 (213)
Q Consensus 76 Lk~pgG~l~~~~~~~~ 91 (213)
|| |||+++++.++..
T Consensus 172 LR-pgG~iifiEHva~ 186 (252)
T KOG4300|consen 172 LR-PGGRIIFIEHVAG 186 (252)
T ss_pred cC-CCcEEEEEecccc
Confidence 99 9999999988744
No 20
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.26 E-value=2.4e-11 Score=100.02 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=67.0
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
.+|+|+|+|+.|++.|++. +++++..+++ +++++++++||+|++..++|+. |..++++++.|+||
T Consensus 103 ~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-------~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~Lk- 174 (272)
T PRK11873 103 GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-------EALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLK- 174 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-------hhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcC-
Confidence 4799999999999999972 5677777776 7888888999999999999988 99999999999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
|||+|++.+..
T Consensus 175 pGG~l~i~~~~ 185 (272)
T PRK11873 175 PGGRFAISDVV 185 (272)
T ss_pred CCcEEEEEEee
Confidence 99999987654
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.25 E-value=3.7e-11 Score=96.48 Aligned_cols=78 Identities=24% Similarity=0.269 Sum_probs=68.2
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
.+|+|+|+|+.|++.|++. +++++..+++ +++++++++||+|++..++||+ ++.++++++.|+||
T Consensus 71 ~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-------~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk- 142 (231)
T TIGR02752 71 GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA-------MELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK- 142 (231)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech-------hcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-
Confidence 5899999999999999862 4677888877 7778888999999999999998 99999999999999
Q ss_pred CCeEEEEEeCCCC
Q 035840 79 PNGVIAAWTYTMP 91 (213)
Q Consensus 79 pgG~l~~~~~~~~ 91 (213)
|||.+++.....+
T Consensus 143 ~gG~l~~~~~~~~ 155 (231)
T TIGR02752 143 PGGKVVCLETSQP 155 (231)
T ss_pred cCeEEEEEECCCC
Confidence 9999987766544
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.22 E-value=3.5e-11 Score=94.63 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=62.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQ 71 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e 71 (213)
||.+..+|+|+|+|+.|++.|++. .++++.+++. .+.+++ ++||+|++..++||+ +...++.+
T Consensus 48 La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~-------~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~ 119 (197)
T PRK11207 48 LAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL-------NNLTFD-GEYDFILSTVVLMFLEAKTIPGLIAN 119 (197)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh-------hhCCcC-CCcCEEEEecchhhCCHHHHHHHHHH
Confidence 456677999999999999999862 3466666665 666664 569999999999998 46799999
Q ss_pred HHHHhcCCCeEEEEEe
Q 035840 72 VKWVLKKPNGVIAAWT 87 (213)
Q Consensus 72 ~~rvLk~pgG~l~~~~ 87 (213)
+.|+|| |||.+++..
T Consensus 120 i~~~Lk-pgG~~~~~~ 134 (197)
T PRK11207 120 MQRCTK-PGGYNLIVA 134 (197)
T ss_pred HHHHcC-CCcEEEEEE
Confidence 999999 999976543
No 23
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.21 E-value=1.5e-11 Score=97.59 Aligned_cols=82 Identities=26% Similarity=0.331 Sum_probs=70.0
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC---CC--ceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL---PN--IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKW 74 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~---~~--v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~r 74 (213)
||+.+++|+|+|+|+.+|+.|+.+ .+ ++|....+ +++-...++||+|+|...++++ |+..++..+.+
T Consensus 77 mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~-------edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~ 149 (243)
T COG2227 77 LARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV-------EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAK 149 (243)
T ss_pred HHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH-------HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHH
Confidence 477889999999999999999974 33 44777766 6665555899999999999988 99999999999
Q ss_pred HhcCCCeEEEEEeCCC
Q 035840 75 VLKKPNGVIAAWTYTM 90 (213)
Q Consensus 75 vLk~pgG~l~~~~~~~ 90 (213)
.+| |||.+++.+.+.
T Consensus 150 lvk-P~G~lf~STinr 164 (243)
T COG2227 150 LVK-PGGILFLSTINR 164 (243)
T ss_pred HcC-CCcEEEEecccc
Confidence 999 999998887663
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.20 E-value=5.9e-11 Score=89.34 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=66.4
Q ss_pred CCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccC-ChhHHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWF-DLPQFYKQVKWV 75 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rv 75 (213)
.++|+|+|+|+.|++.|++ .++++|.++++ ++++ ++ ++||+|++..++||+ ++..+++++.++
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~-------~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~ 99 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI-------EDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRL 99 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT-------TCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHH
T ss_pred CCEEEEEECcHHHHHHhhcccccccccccceEEeeh-------hccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHH
Confidence 5689999999999999998 25789999888 4455 55 789999999999999 888999999999
Q ss_pred hcCCCeEEEEEeCC
Q 035840 76 LKKPNGVIAAWTYT 89 (213)
Q Consensus 76 Lk~pgG~l~~~~~~ 89 (213)
|| +||.+++....
T Consensus 100 lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 100 LK-PGGILIISDPN 112 (152)
T ss_dssp EE-EEEEEEEEEEE
T ss_pred cC-CCcEEEEEECC
Confidence 99 99999877655
No 25
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=1.2e-11 Score=86.20 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=44.8
Q ss_pred CCeEEEEeCCHHHHHHhhcC----C--CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL----P--NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----~--~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
..+++|+|+|+.|++.|+++ . +......... +... ....++||+|++..++||+ |+..+++++.++||
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAELGNDNFERLRFDVL----DLFD-YDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLK 94 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SS----S----CCC----SEEEEE-TTS--S-HHHHHHHHTTT-T
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecC----Chhh-cccccccceehhhhhHhhhhhHHHHHHHHHHHcC
Confidence 56899999999999988874 2 2223332220 0011 1223689999999999999 99999999999999
Q ss_pred CCCeEE
Q 035840 78 KPNGVI 83 (213)
Q Consensus 78 ~pgG~l 83 (213)
|||.|
T Consensus 95 -pgG~l 99 (99)
T PF08242_consen 95 -PGGIL 99 (99)
T ss_dssp -SS-EE
T ss_pred -CCCCC
Confidence 99986
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=9.8e-11 Score=103.71 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.3
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
..+|+|+|+|+.|++.|++. .+++|..+++ ...++++++||+|++..+++|+ |+..++++++|+||
T Consensus 289 ~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~-------~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lk- 360 (475)
T PLN02336 289 DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC-------TKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLK- 360 (475)
T ss_pred CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc-------ccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcC-
Confidence 35899999999999999863 3577888777 6777888899999999999888 99999999999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
|||.|++..+.
T Consensus 361 pgG~l~i~~~~ 371 (475)
T PLN02336 361 PGGKVLISDYC 371 (475)
T ss_pred CCeEEEEEEec
Confidence 99999887654
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.17 E-value=1.1e-10 Score=98.70 Aligned_cols=76 Identities=24% Similarity=0.162 Sum_probs=66.6
Q ss_pred CeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCe
Q 035840 6 KNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG 81 (213)
.+|+|+|+|++|++.|++. .++++..+++ +++++++++||+|+++.++|++ |+..+++++.|+|| |||
T Consensus 138 ~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~-------e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG 209 (340)
T PLN02490 138 KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-------EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGG 209 (340)
T ss_pred CEEEEEECCHHHHHHHHHhhhccCCeEEeccH-------HhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCc
Confidence 5899999999999999974 4677777766 8888999999999999999876 99999999999999 999
Q ss_pred EEEEEeCC
Q 035840 82 VIAAWTYT 89 (213)
Q Consensus 82 ~l~~~~~~ 89 (213)
.+++....
T Consensus 210 ~LvIi~~~ 217 (340)
T PLN02490 210 KACLIGPV 217 (340)
T ss_pred EEEEEEec
Confidence 99876543
No 28
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=1.4e-10 Score=95.18 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=60.7
Q ss_pred CeEEEEeCCHHHHHHhhcC---------------------------------CCceEEecCCCCcchhhccCCCCCCcee
Q 035840 6 KNVIATDTSPKQLEFAIKL---------------------------------PNIRYQLTPPTMSITELEQNVATQSSVD 52 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---------------------------------~~v~~~~~~~~~~~~d~~~~~~~~~sfD 52 (213)
.+|+|+|+|+.||+.|++. .+|+|.+++. .+.++++++||
T Consensus 133 ~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl-------~~~~~~~~~fD 205 (264)
T smart00138 133 VKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNL-------LAESPPLGDFD 205 (264)
T ss_pred eEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccC-------CCCCCccCCCC
Confidence 5899999999999999972 1456666665 66667788999
Q ss_pred eeeechhhccCC---hhHHHHHHHHHhcCCCeEEEEE
Q 035840 53 LVTIAAALHWFD---LPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 53 lV~~~~~~hw~d---~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|+|..++|+++ ..+++++++++|+ |||.|++-
T Consensus 206 ~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg 241 (264)
T smart00138 206 LIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLG 241 (264)
T ss_pred EEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 999999999994 3479999999999 99999763
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.13 E-value=3.4e-11 Score=84.38 Aligned_cols=68 Identities=29% Similarity=0.519 Sum_probs=57.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechh-hccCC---hhHHHHHHHHHh
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAA-LHWFD---LPQFYKQVKWVL 76 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~-~hw~d---~~~~~~e~~rvL 76 (213)
.+++|+|+|++|++.|++. .+++|.++++ .+++..+++||+|++..+ +++++ ...+++++.++|
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-------~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-------RDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLL 97 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-------TCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTE
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-------hHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999983 4788988888 777788889999999544 88884 578999999999
Q ss_pred cCCCe
Q 035840 77 KKPNG 81 (213)
Q Consensus 77 k~pgG 81 (213)
| |||
T Consensus 98 ~-pgG 101 (101)
T PF13649_consen 98 R-PGG 101 (101)
T ss_dssp E-EEE
T ss_pred C-CCC
Confidence 9 998
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.10 E-value=2.5e-10 Score=92.87 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=62.8
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC---hhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD---LPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d---~~~~~~e~~r 74 (213)
..+|+|+|+|+.|++.|+++ .++++.++++ .+++++ .+|+|+++.++|+++ ...++++++|
T Consensus 82 ~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~-------~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~ 152 (247)
T PRK15451 82 NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-------RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQ 152 (247)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh-------hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHH
Confidence 46999999999999999873 2578888777 666654 489999999999994 4679999999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
+|| |||.|++.+..
T Consensus 153 ~Lk-pGG~l~l~e~~ 166 (247)
T PRK15451 153 GLN-PGGALVLSEKF 166 (247)
T ss_pred hcC-CCCEEEEEEec
Confidence 999 99999987643
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.09 E-value=8.3e-11 Score=88.63 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=62.1
Q ss_pred cccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCC
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pg 80 (213)
++.+.+|+|+|+|+.|++. .++.....+. ...+.++++||+|++..++||+ |+..+++++.++|| ||
T Consensus 41 ~~~~~~~~g~D~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pg 108 (161)
T PF13489_consen 41 AKRGFEVTGVDISPQMIEK----RNVVFDNFDA-------QDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PG 108 (161)
T ss_dssp HHTTSEEEEEESSHHHHHH----TTSEEEEEEC-------HTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EE
T ss_pred HHhCCEEEEEECCHHHHhh----hhhhhhhhhh-------hhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CC
Confidence 3456699999999999999 2344444333 4445678899999999999999 99999999999999 99
Q ss_pred eEEEEEeCC
Q 035840 81 GVIAAWTYT 89 (213)
Q Consensus 81 G~l~~~~~~ 89 (213)
|.+++....
T Consensus 109 G~l~~~~~~ 117 (161)
T PF13489_consen 109 GYLVISDPN 117 (161)
T ss_dssp EEEEEEEEB
T ss_pred CEEEEEEcC
Confidence 999877665
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.06 E-value=6.4e-10 Score=78.97 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=60.1
Q ss_pred cCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeech-hhccC----ChhHHHHH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAA-ALHWF----DLPQFYKQ 71 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~-~~hw~----d~~~~~~e 71 (213)
...+|+|+|+||.|++.|++. +++++..+++. ... -....||+|++.. +++++ ++..++++
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~------~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~ 96 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAE------FDP-DFLEPFDLVICSGFTLHFLLPLDERRRVLER 96 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCH------GGT-TTSSCEEEEEECSGSGGGCCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccc------cCc-ccCCCCCEEEECCCccccccchhHHHHHHHH
Confidence 577999999999999999973 68899998761 222 2334499999998 66643 45789999
Q ss_pred HHHHhcCCCeEEEEEe
Q 035840 72 VKWVLKKPNGVIAAWT 87 (213)
Q Consensus 72 ~~rvLk~pgG~l~~~~ 87 (213)
+.+.|+ |||+|.+..
T Consensus 97 ~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 97 IRRLLK-PGGRLVINT 111 (112)
T ss_dssp HHHHEE-EEEEEEEEE
T ss_pred HHHhcC-CCcEEEEEE
Confidence 999999 999998753
No 33
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=7.3e-10 Score=87.19 Aligned_cols=79 Identities=32% Similarity=0.384 Sum_probs=67.4
Q ss_pred cCCeEEEEeCCHHHHHHhhcC--CCc--eEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 4 IYKNVIATDTSPKQLEFAIKL--PNI--RYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~--~~v--~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
...+++-+|-|-.|++.++.- |.+ ++.+++- |.++|.+++||+|+++.++||+ |.+..+.++...||
T Consensus 94 ~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE-------E~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lK- 165 (325)
T KOG2940|consen 94 GVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE-------EFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALK- 165 (325)
T ss_pred chhheeeeecchHHHHHhhccCCCceEEEEEecch-------hcccccccchhhhhhhhhhhhhccCchHHHHHHHhcC-
Confidence 356889999999999999974 444 4667776 8889999999999999999999 99999999999999
Q ss_pred CCeEEEEEeCCC
Q 035840 79 PNGVIAAWTYTM 90 (213)
Q Consensus 79 pgG~l~~~~~~~ 90 (213)
|+|.|+-.-.+.
T Consensus 166 PDg~Fiasmlgg 177 (325)
T KOG2940|consen 166 PDGLFIASMLGG 177 (325)
T ss_pred CCccchhHHhcc
Confidence 999987554443
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=5e-10 Score=94.42 Aligned_cols=74 Identities=24% Similarity=0.039 Sum_probs=62.7
Q ss_pred CeEEEEeCCHHHHHHhhc-------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEFAIK-------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~-------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
+.|+|+|+|+.|+.+++. ..++.|..+++ +++|+ +++||+|++..++|+. |+..++++++++||
T Consensus 146 ~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-------e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk 217 (322)
T PRK15068 146 KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-------EQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV 217 (322)
T ss_pred CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-------HHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcC
Confidence 469999999999987543 13678888776 78887 7889999999999888 99999999999999
Q ss_pred CCCeEEEEEeC
Q 035840 78 KPNGVIAAWTY 88 (213)
Q Consensus 78 ~pgG~l~~~~~ 88 (213)
|||.|++.+.
T Consensus 218 -pGG~lvl~~~ 227 (322)
T PRK15068 218 -PGGELVLETL 227 (322)
T ss_pred -CCcEEEEEEE
Confidence 9999986543
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.05 E-value=4.6e-10 Score=88.11 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=60.6
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC---CC--ceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL---PN--IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQV 72 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~---~~--v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~ 72 (213)
||.+..+|+|+|+|+.|++.|++. .+ +.+...+. ...+++ ++||+|++..++|++ +....++++
T Consensus 48 la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-------~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~ 119 (195)
T TIGR00477 48 LSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-------NAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANM 119 (195)
T ss_pred HHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-------hhcccc-CCCCEEEEecccccCCHHHHHHHHHHH
Confidence 355677999999999999998763 23 44445444 555554 579999999999988 457899999
Q ss_pred HHHhcCCCeEEEEEeC
Q 035840 73 KWVLKKPNGVIAAWTY 88 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~ 88 (213)
+|+|| |||.+++..+
T Consensus 120 ~~~Lk-pgG~lli~~~ 134 (195)
T TIGR00477 120 QAHTR-PGGYNLIVAA 134 (195)
T ss_pred HHHhC-CCcEEEEEEe
Confidence 99999 9999765543
No 36
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.05 E-value=2.8e-10 Score=91.20 Aligned_cols=78 Identities=27% Similarity=0.302 Sum_probs=64.4
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC--------CC----ceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL--------PN----IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQ 67 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~--------~~----v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~ 67 (213)
||+.++.|+|+|+|+.|++.|+++ .+ ++|.+.++ |.. .+.||.|+|...++++ |++.
T Consensus 107 LArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~-------E~~---~~~fDaVvcsevleHV~dp~~ 176 (282)
T KOG1270|consen 107 LARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV-------EGL---TGKFDAVVCSEVLEHVKDPQE 176 (282)
T ss_pred hHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch-------hhc---ccccceeeeHHHHHHHhCHHH
Confidence 689999999999999999999984 22 34444454 432 2239999999999988 9999
Q ss_pred HHHHHHHHhcCCCeEEEEEeCC
Q 035840 68 FYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
++..+.+.|| |||.+.+.+..
T Consensus 177 ~l~~l~~~lk-P~G~lfittin 197 (282)
T KOG1270|consen 177 FLNCLSALLK-PNGRLFITTIN 197 (282)
T ss_pred HHHHHHHHhC-CCCceEeeehh
Confidence 9999999999 99999887765
No 37
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.03 E-value=9.1e-10 Score=90.75 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=59.9
Q ss_pred CeEEEEeCCHHHHHHhhcC-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 6 KNVIATDTSPKQLEFAIKL-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
.+|+|+|+|+.|++.|++. +++.|.++++ .++|+++++||+|++..+ +..++|+.|+|| |||.|+
T Consensus 113 ~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-------~~lp~~~~sfD~I~~~~~------~~~~~e~~rvLk-pgG~li 178 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKRYPQVTFCVASS-------HRLPFADQSLDAIIRIYA------PCKAEELARVVK-PGGIVI 178 (272)
T ss_pred CeEEEECCCHHHHHHHHHhCCCCeEEEeec-------ccCCCcCCceeEEEEecC------CCCHHHHHhhcc-CCCEEE
Confidence 3799999999999999874 7888999887 788999999999998654 345789999999 999998
Q ss_pred EEeCC
Q 035840 85 AWTYT 89 (213)
Q Consensus 85 ~~~~~ 89 (213)
+...+
T Consensus 179 ~~~p~ 183 (272)
T PRK11088 179 TVTPG 183 (272)
T ss_pred EEeCC
Confidence 77655
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.02 E-value=8e-10 Score=89.34 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=62.4
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~r 74 (213)
..+|+|+|+|+.|++.|+++ .++++..+++ .+.+++ .+|+|++..++||+ ++..+++++.|
T Consensus 79 ~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~-------~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~ 149 (239)
T TIGR00740 79 NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI-------RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYE 149 (239)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh-------hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHH
Confidence 45899999999999999873 2567777776 776655 48999999999998 45789999999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
+|| |||.|++.+..
T Consensus 150 ~Lk-pgG~l~i~d~~ 163 (239)
T TIGR00740 150 GLN-PNGVLVLSEKF 163 (239)
T ss_pred hcC-CCeEEEEeecc
Confidence 999 99999887653
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.02 E-value=7.8e-10 Score=97.98 Aligned_cols=82 Identities=23% Similarity=0.197 Sum_probs=67.8
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C--hhHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D--LPQFYKQVK 73 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d--~~~~~~e~~ 73 (213)
|++++.+|+|+|+|+.|++.+++. +++++.+++++. ..+++++++||+|++..++||+ | ...+++++.
T Consensus 55 la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-----~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~ 129 (475)
T PLN02336 55 LAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-----PDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMV 129 (475)
T ss_pred HHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-----cccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHH
Confidence 356678999999999999998752 578888887721 2467888999999999999998 3 578999999
Q ss_pred HHhcCCCeEEEEEeC
Q 035840 74 WVLKKPNGVIAAWTY 88 (213)
Q Consensus 74 rvLk~pgG~l~~~~~ 88 (213)
|+|| |||.+++..+
T Consensus 130 r~Lk-~gG~l~~~d~ 143 (475)
T PLN02336 130 KWLK-VGGYIFFRES 143 (475)
T ss_pred HhcC-CCeEEEEEec
Confidence 9999 9999987643
No 40
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.01 E-value=5.4e-10 Score=86.44 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=61.8
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc----CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC-h---hHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK----LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD-L---PQFYKQV 72 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~----~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d-~---~~~~~e~ 72 (213)
||+++.+++++|+|+..|+.||+ .++|+|.+++. .+. .++++||+|+.+..+++++ . ..++..+
T Consensus 61 LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv-------p~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l 132 (201)
T PF05401_consen 61 LAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV-------PEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRL 132 (201)
T ss_dssp HGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T-------TT----SS-EEEEEEES-GGGSSSHHHHHHHHHHH
T ss_pred HHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC-------CCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHH
Confidence 68899999999999999999998 37899999877 443 5788999999999999994 3 3578999
Q ss_pred HHHhcCCCeEEEEEeCC
Q 035840 73 KWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~~ 89 (213)
...|+ |||.|++-.+.
T Consensus 133 ~~~L~-pgG~LV~g~~r 148 (201)
T PF05401_consen 133 VAALA-PGGHLVFGHAR 148 (201)
T ss_dssp HHTEE-EEEEEEEEEE-
T ss_pred HHHhC-CCCEEEEEEec
Confidence 99999 99999775543
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.00 E-value=9.9e-10 Score=87.74 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=62.8
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
.+|+|+|+|++|++.|+++ .++++..++. ...+++ ++||+|++..++|++ |+...++++.++||
T Consensus 24 ~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~-------~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~Lk 95 (224)
T smart00828 24 LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS-------AKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLK 95 (224)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc-------ccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcC
Confidence 4899999999999999873 3467777766 444554 479999999999988 99999999999999
Q ss_pred CCCeEEEEEeCC
Q 035840 78 KPNGVIAAWTYT 89 (213)
Q Consensus 78 ~pgG~l~~~~~~ 89 (213)
|||.+++....
T Consensus 96 -pgG~l~i~~~~ 106 (224)
T smart00828 96 -DGGHLVLADFI 106 (224)
T ss_pred -CCCEEEEEEcc
Confidence 99999887653
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.98 E-value=1.9e-09 Score=90.27 Aligned_cols=74 Identities=19% Similarity=-0.001 Sum_probs=60.0
Q ss_pred CeEEEEeCCHHHHHHhhc-------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEFAIK-------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~-------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
..|+|+|||+.|+.+++. ..++.+...++ +++|.. .+||+|++..+++|+ |+..++++++|+||
T Consensus 145 ~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i-------e~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk 216 (314)
T TIGR00452 145 KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI-------EQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLV 216 (314)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH-------HHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcC
Confidence 479999999999987543 13456666655 777654 479999999999888 99999999999999
Q ss_pred CCCeEEEEEeC
Q 035840 78 KPNGVIAAWTY 88 (213)
Q Consensus 78 ~pgG~l~~~~~ 88 (213)
|||.|++.+.
T Consensus 217 -pGG~Lvletl 226 (314)
T TIGR00452 217 -IKGELVLETL 226 (314)
T ss_pred -CCCEEEEEEE
Confidence 9999987653
No 43
>PRK06922 hypothetical protein; Provisional
Probab=98.95 E-value=2.5e-09 Score=96.29 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccC--------------
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWF-------------- 63 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~-------------- 63 (213)
..+|+|+|+|+.|++.|++. .++.+.++++ .++| +++++||+|+++.++||+
T Consensus 442 ~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa-------~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~e 514 (677)
T PRK06922 442 DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA-------INLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHE 514 (677)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch-------HhCccccCCCCEEEEEEchHHHhhhhhcccccccccHH
Confidence 35999999999999999873 2456667776 6666 788999999999999864
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEeC
Q 035840 64 DLPQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 64 d~~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
+..+++++++|+|| |||.+++...
T Consensus 515 dl~kiLreI~RVLK-PGGrLII~D~ 538 (677)
T PRK06922 515 VIKKGLQSAYEVLK-PGGRIIIRDG 538 (677)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 45789999999999 9999988754
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.90 E-value=3.7e-09 Score=87.84 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=61.3
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVK 73 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~ 73 (213)
|....+|+|+|+|+.|++.|++. .++++...+. ...++ +++||+|++..++|++ +....++++.
T Consensus 139 a~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~-------~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~ 210 (287)
T PRK12335 139 ALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI-------NSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQ 210 (287)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech-------hcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHH
Confidence 55677999999999999998863 2456666555 55444 6789999999999998 4578999999
Q ss_pred HHhcCCCeEEEEEe
Q 035840 74 WVLKKPNGVIAAWT 87 (213)
Q Consensus 74 rvLk~pgG~l~~~~ 87 (213)
|+|| |||.+++..
T Consensus 211 ~~Lk-pgG~~l~v~ 223 (287)
T PRK12335 211 EHTN-PGGYNLIVC 223 (287)
T ss_pred HhcC-CCcEEEEEE
Confidence 9999 999976543
No 45
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.88 E-value=7.6e-09 Score=83.01 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=66.9
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHh
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVL 76 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvL 76 (213)
..+|+|+|+|+.|++.|++. .++.+..+++ .+.++++++||+|++..++|++ ++...+.++.++|
T Consensus 76 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L 148 (239)
T PRK00216 76 TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-------EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVL 148 (239)
T ss_pred CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-------ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhc
Confidence 37999999999999999874 3467777766 6666778899999999999988 9999999999999
Q ss_pred cCCCeEEEEEeCCCC
Q 035840 77 KKPNGVIAAWTYTMP 91 (213)
Q Consensus 77 k~pgG~l~~~~~~~~ 91 (213)
+ |||.+++.+...+
T Consensus 149 ~-~gG~li~~~~~~~ 162 (239)
T PRK00216 149 K-PGGRLVILEFSKP 162 (239)
T ss_pred c-CCcEEEEEEecCC
Confidence 9 9999987765543
No 46
>PRK06202 hypothetical protein; Provisional
Probab=98.86 E-value=6.8e-09 Score=83.54 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=59.4
Q ss_pred CeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Ch--hHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DL--PQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~--~~~~~e~~rvLk~p 79 (213)
.+|+|+|+|+.|++.|++. +++++...++ +.++.++++||+|+++.++||+ |. ..+++++.|+++
T Consensus 89 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-------~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-- 159 (232)
T PRK06202 89 LEVTAIDPDPRAVAFARANPRRPGVTFRQAVS-------DELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-- 159 (232)
T ss_pred cEEEEEcCCHHHHHHHHhccccCCCeEEEEec-------ccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--
Confidence 4899999999999999974 4677777766 5666678899999999999999 43 579999999998
Q ss_pred CeEEEEEeCC
Q 035840 80 NGVIAAWTYT 89 (213)
Q Consensus 80 gG~l~~~~~~ 89 (213)
|+ +++....
T Consensus 160 ~~-~~i~dl~ 168 (232)
T PRK06202 160 RL-VLHNDLI 168 (232)
T ss_pred ee-EEEeccc
Confidence 43 3344444
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.86 E-value=1.2e-08 Score=79.47 Aligned_cols=71 Identities=23% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
..+|+|+|+|+.|++.|++. +++++..+++ ++.+. +++||+|++.. +.+++.++.+++++||
T Consensus 69 ~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~-------~~~~~-~~~fDlV~~~~---~~~~~~~l~~~~~~Lk- 136 (187)
T PRK00107 69 ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA-------EEFGQ-EEKFDVVTSRA---VASLSDLVELCLPLLK- 136 (187)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH-------hhCCC-CCCccEEEEcc---ccCHHHHHHHHHHhcC-
Confidence 56999999999999999872 4688888887 66655 77899999864 3488999999999999
Q ss_pred CCeEEEEEe
Q 035840 79 PNGVIAAWT 87 (213)
Q Consensus 79 pgG~l~~~~ 87 (213)
|||.+++..
T Consensus 137 pGG~lv~~~ 145 (187)
T PRK00107 137 PGGRFLALK 145 (187)
T ss_pred CCeEEEEEe
Confidence 999998663
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.85 E-value=1.5e-08 Score=80.37 Aligned_cols=78 Identities=31% Similarity=0.371 Sum_probs=67.1
Q ss_pred CeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCC
Q 035840 6 KNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pg 80 (213)
.+++|+|+|+.+++.+++. .++++..+++ .+.++++++||+|++..++|++ ++..+++++.++|+ ||
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~-------~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~g 136 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA-------EALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PG 136 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhccCCCceEEecch-------hcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CC
Confidence 4899999999999999873 3577777776 6677778899999999999988 99999999999999 99
Q ss_pred eEEEEEeCCCC
Q 035840 81 GVIAAWTYTMP 91 (213)
Q Consensus 81 G~l~~~~~~~~ 91 (213)
|.+++..+..+
T Consensus 137 G~l~~~~~~~~ 147 (223)
T TIGR01934 137 GRLVILEFSKP 147 (223)
T ss_pred cEEEEEEecCC
Confidence 99988776533
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.84 E-value=1.5e-08 Score=80.05 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=60.9
Q ss_pred CCeEEEEeCCHHHHHHhhc-CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC---hhHHHHHHHHHhcCCC
Q 035840 5 YKNVIATDTSPKQLEFAIK-LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD---LPQFYKQVKWVLKKPN 80 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~-~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d---~~~~~~e~~rvLk~pg 80 (213)
..+|+|+|+|+.|++.|++ .+++.+..+++ .+ |+++++||+|++..++|+++ ..++++++.|+++
T Consensus 67 ~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~-------~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--- 135 (204)
T TIGR03587 67 FKHIYGVEINEYAVEKAKAYLPNINIIQGSL-------FD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--- 135 (204)
T ss_pred CCeEEEEECCHHHHHHHHhhCCCCcEEEeec-------cC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC---
Confidence 4689999999999999998 46778888776 55 78899999999999998885 4677788888776
Q ss_pred eEEEEEeCCCC
Q 035840 81 GVIAAWTYTMP 91 (213)
Q Consensus 81 G~l~~~~~~~~ 91 (213)
+.+++..+..+
T Consensus 136 ~~v~i~e~~~~ 146 (204)
T TIGR03587 136 RYILIAEYYNP 146 (204)
T ss_pred cEEEEEEeeCC
Confidence 35666665444
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.84 E-value=7.1e-09 Score=81.80 Aligned_cols=77 Identities=23% Similarity=0.228 Sum_probs=62.2
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccCC---------hhHH
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWFD---------LPQF 68 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~d---------~~~~ 68 (213)
.+|+|+|+|+.|++.|++. +++++.++++. +.++ +++++||+|++..+..|.. ...+
T Consensus 65 ~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~------~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~ 138 (202)
T PRK00121 65 INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV------EVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEF 138 (202)
T ss_pred ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH------HHHHHHcCccccceEEEECCCCCCCccccccccCCHHH
Confidence 5899999999999999862 56788887761 3344 6788999999988877763 4678
Q ss_pred HHHHHHHhcCCCeEEEEEeCC
Q 035840 69 YKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 69 ~~e~~rvLk~pgG~l~~~~~~ 89 (213)
++++.++|| |||.|++.+..
T Consensus 139 l~~i~~~Lk-pgG~l~i~~~~ 158 (202)
T PRK00121 139 LALYARKLK-PGGEIHFATDW 158 (202)
T ss_pred HHHHHHHcC-CCCEEEEEcCC
Confidence 999999999 99999876544
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.78 E-value=2.8e-08 Score=77.07 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=56.2
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
.+|+|+|+|+.|++.|++ .+++++..+++ ++++ .+++||+|++.. +.+....++.+.++|| |
T Consensus 67 ~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-------~~~~-~~~~fD~I~s~~---~~~~~~~~~~~~~~Lk-p 134 (181)
T TIGR00138 67 LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-------EDFQ-HEEQFDVITSRA---LASLNVLLELTLNLLK-V 134 (181)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-------hhcc-ccCCccEEEehh---hhCHHHHHHHHHHhcC-C
Confidence 589999999999998875 24688888887 5553 467899999865 3367788999999999 9
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
||.++++
T Consensus 135 gG~lvi~ 141 (181)
T TIGR00138 135 GGYFLAY 141 (181)
T ss_pred CCEEEEE
Confidence 9999876
No 52
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.77 E-value=2.5e-08 Score=79.32 Aligned_cols=81 Identities=21% Similarity=0.055 Sum_probs=61.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------------------CCceEEecCCCCcchhhccCCCC-CCceeeeeechhhc
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------------------PNIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAALH 61 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------------------~~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~h 61 (213)
||.++-+|+|+|+|+.+++.|.+. .++++.++|. .+++.. .++||.|+-..++|
T Consensus 52 LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~-------~~~~~~~~~~fD~i~D~~~~~ 124 (213)
T TIGR03840 52 LAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF-------FALTAADLGPVDAVYDRAALI 124 (213)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC-------CCCCcccCCCcCEEEechhhc
Confidence 578888999999999999996432 2345555554 555432 35699999988888
Q ss_pred cC---ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 62 WF---DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 62 w~---d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
.+ .+...++.+.++|| |||++.+.++.
T Consensus 125 ~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~ 154 (213)
T TIGR03840 125 ALPEEMRQRYAAHLLALLP-PGARQLLITLD 154 (213)
T ss_pred cCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence 77 55678999999999 99987666553
No 53
>PLN03075 nicotianamine synthase; Provisional
Probab=98.75 E-value=4.2e-08 Score=81.17 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=60.3
Q ss_pred CeEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cC--ChhHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WF--DLPQFYKQVKW 74 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~--d~~~~~~e~~r 74 (213)
++|+|+|.|++|++.||+. .+++|.++++ .+.+-..+.||+|+++ ++| |- ++.+++.++++
T Consensus 150 ~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da-------~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~ 221 (296)
T PLN03075 150 TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV-------MDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGK 221 (296)
T ss_pred CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch-------hhcccccCCcCEEEEe-cccccccccHHHHHHHHHH
Confidence 4799999999999999982 3589999888 4433234679999999 665 52 89999999999
Q ss_pred HhcCCCeEEEEEe
Q 035840 75 VLKKPNGVIAAWT 87 (213)
Q Consensus 75 vLk~pgG~l~~~~ 87 (213)
.|+ |||.|.+-.
T Consensus 222 ~Lk-PGG~Lvlr~ 233 (296)
T PLN03075 222 HMA-PGALLMLRS 233 (296)
T ss_pred hcC-CCcEEEEec
Confidence 999 999998765
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.73 E-value=2.5e-08 Score=85.97 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=60.5
Q ss_pred CCeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhcC
Q 035840 5 YKNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLKK 78 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~ 78 (213)
..+|+|+|+|++|++.|+++ .++++..++. .++ +++||.|++..+++++ +....++++.|+||
T Consensus 190 g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~-------~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk- 258 (383)
T PRK11705 190 GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY-------RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK- 258 (383)
T ss_pred CCEEEEEeCCHHHHHHHHHHhccCeEEEEECch-------hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-
Confidence 45899999999999999974 2355666555 443 4689999999999988 34789999999999
Q ss_pred CCeEEEEEeCCC
Q 035840 79 PNGVIAAWTYTM 90 (213)
Q Consensus 79 pgG~l~~~~~~~ 90 (213)
|||.+++...+.
T Consensus 259 pGG~lvl~~i~~ 270 (383)
T PRK11705 259 PDGLFLLHTIGS 270 (383)
T ss_pred CCcEEEEEEccC
Confidence 999998876653
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.73 E-value=2.6e-08 Score=78.06 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=61.7
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCC---CCCCceeeeeechhhccCCh---------hH
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNV---ATQSSVDLVTIAAALHWFDL---------PQ 67 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~---~~~~sfDlV~~~~~~hw~d~---------~~ 67 (213)
.+|+|+|+|+.|++.|++ ..++++..+++ .+++ ++++++|.|++...-+|... +.
T Consensus 41 ~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~-------~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~ 113 (194)
T TIGR00091 41 KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA-------NELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPH 113 (194)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH-------HHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHH
Confidence 589999999999999876 25788888887 3332 56679999999988888732 56
Q ss_pred HHHHHHHHhcCCCeEEEEEeCC
Q 035840 68 FYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
++++++|+|| |||.|.+.+..
T Consensus 114 ~l~~~~r~Lk-pgG~l~~~td~ 134 (194)
T TIGR00091 114 FLKEYANVLK-KGGVIHFKTDN 134 (194)
T ss_pred HHHHHHHHhC-CCCEEEEEeCC
Confidence 8999999999 99999876544
No 56
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.69 E-value=6.2e-08 Score=77.25 Aligned_cols=79 Identities=28% Similarity=0.343 Sum_probs=64.1
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-----C-CceEEecCCCCcchhhccCCCC-CCceeeeeechhhccC-ChhHHHHHHHH
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-----P-NIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAALHWF-DLPQFYKQVKW 74 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-----~-~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~hw~-d~~~~~~e~~r 74 (213)
....+|+|+|+|+.|++.|++. . ++++..+++ ++++.. +++||+|++..++|++ ++..+++++.+
T Consensus 65 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-------~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~ 137 (224)
T TIGR01983 65 RLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV-------EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQ 137 (224)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-------HHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHH
Confidence 3456799999999999999872 1 466777666 555544 4789999999999988 99999999999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
+|+ |||.+.+....
T Consensus 138 ~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 138 LLK-PGGILFFSTIN 151 (224)
T ss_pred hcC-CCcEEEEEecC
Confidence 999 99998776544
No 57
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.63 E-value=1.2e-07 Score=75.78 Aligned_cols=78 Identities=19% Similarity=0.010 Sum_probs=59.3
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------------------CCceEEecCCCCcchhhccCCCC-CCceeeeeechhhc
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------------------PNIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAALH 61 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------------------~~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~h 61 (213)
||.++.+|+|||+|+..++.|.+. .++++.++|. .+++.. ..+||+|+-..++|
T Consensus 55 LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-------~~l~~~~~~~fd~v~D~~~~~ 127 (218)
T PRK13255 55 LAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF-------FALTAADLADVDAVYDRAALI 127 (218)
T ss_pred HHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc-------cCCCcccCCCeeEEEehHhHh
Confidence 577888999999999999987431 2344555554 555433 25799999999998
Q ss_pred cC---ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 62 WF---DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 62 w~---d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.+ .+...++.+.++|| |||++.+.
T Consensus 128 ~l~~~~R~~~~~~l~~lL~-pgG~~~l~ 154 (218)
T PRK13255 128 ALPEEMRERYVQQLAALLP-AGCRGLLV 154 (218)
T ss_pred hCCHHHHHHHHHHHHHHcC-CCCeEEEE
Confidence 87 56789999999999 99975543
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.63 E-value=1.4e-07 Score=67.75 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=55.7
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhcc-CCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQ-NVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~-~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
.+|+|+|+|+.|++.|++. +++.+..+++ .. .+....+||.|++..+.+. ...+++++.|+||
T Consensus 44 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk- 113 (124)
T TIGR02469 44 GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA-------PEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLR- 113 (124)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc-------cccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcC-
Confidence 5899999999999998862 4677777766 32 2233458999998776543 4689999999999
Q ss_pred CCeEEEEEe
Q 035840 79 PNGVIAAWT 87 (213)
Q Consensus 79 pgG~l~~~~ 87 (213)
|||.|++..
T Consensus 114 ~gG~li~~~ 122 (124)
T TIGR02469 114 PGGRIVLNA 122 (124)
T ss_pred CCCEEEEEe
Confidence 999997654
No 59
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.59 E-value=1.6e-07 Score=74.43 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=57.5
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccC--------CCCCCceeeeeechhhccC-Ch-----------
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQN--------VATQSSVDLVTIAAALHWF-DL----------- 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~--------~~~~~sfDlV~~~~~~hw~-d~----------- 65 (213)
++|+|||+++ |. ..+++.+..+++ .+. ++.+++||+|++..+.+|. ++
T Consensus 77 ~~V~aVDi~~-~~----~~~~v~~i~~D~-------~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~ 144 (209)
T PRK11188 77 GRVIACDILP-MD----PIVGVDFLQGDF-------RDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLV 144 (209)
T ss_pred ceEEEEeccc-cc----CCCCcEEEecCC-------CChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHH
Confidence 5899999998 32 346788888887 332 3567889999999988886 32
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWTYTMPE 92 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~~~~~~ 92 (213)
..++.++.|+|| |||.|++..+....
T Consensus 145 ~~~L~~~~~~Lk-pGG~~vi~~~~~~~ 170 (209)
T PRK11188 145 ELALDMCRDVLA-PGGSFVVKVFQGEG 170 (209)
T ss_pred HHHHHHHHHHcC-CCCEEEEEEecCcC
Confidence 468999999999 99999886665443
No 60
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.59 E-value=1.3e-07 Score=75.43 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=58.4
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQ 71 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e 71 (213)
+....+|+|+|+|++|++.|+++ .++.|.++++ ++.+ ++||+|++..+++++ +...++.+
T Consensus 74 a~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-------~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~ 143 (219)
T TIGR02021 74 AKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL-------LSLC---GEFDIVVCMDVLIHYPASDMAKALGH 143 (219)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh-------hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHH
Confidence 44567999999999999999873 2677888777 5544 789999999998766 45788999
Q ss_pred HHHHhcCCCeEEEE
Q 035840 72 VKWVLKKPNGVIAA 85 (213)
Q Consensus 72 ~~rvLk~pgG~l~~ 85 (213)
+.++++ +|+.+.+
T Consensus 144 i~~~~~-~~~~i~~ 156 (219)
T TIGR02021 144 LASLTK-ERVIFTF 156 (219)
T ss_pred HHHHhC-CCEEEEE
Confidence 999999 7766654
No 61
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.58 E-value=1.3e-07 Score=74.06 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=55.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhcc-C-CCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQ-N-VATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~-~-~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
...++|+|+|++|++.|++. ++++..+++ ++ + ++++++||+|+++.++||+ |+..+++++.|+++
T Consensus 36 ~~~~~giD~s~~~i~~a~~~-~~~~~~~d~-------~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 36 QVRGYGIEIDQDGVLACVAR-GVNVIQGDL-------DEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCcEEEEeCCHHHHHHHHHc-CCeEEEEEh-------hhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 34789999999999999864 677887776 33 3 3778899999999999999 99999999999887
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.57 E-value=2.8e-07 Score=71.18 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=57.2
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C------------
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D------------ 64 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d------------ 64 (213)
....+|+|+|+|+.|++.|++. .++++..+++ .+. .+++||+|+++..+|.. +
T Consensus 39 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-------~~~--~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~ 109 (179)
T TIGR00537 39 GKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL-------FKG--VRGKFDVILFNPPYLPLEDDLRRGDWLDVAI 109 (179)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc-------ccc--cCCcccEEEECCCCCCCcchhcccchhhhhh
Confidence 3455899999999999999873 2456666665 333 24589999998777544 1
Q ss_pred ---------hhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 65 ---------LPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 65 ---------~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
....++++.|+|| |||.+.+....
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~ 142 (179)
T TIGR00537 110 DGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSS 142 (179)
T ss_pred hcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEec
Confidence 2467999999999 99999876543
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.52 E-value=2.8e-07 Score=74.06 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=62.3
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCC-CCCCceeeeeechhhccC-ChhHHHHHHHHH
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNV-ATQSSVDLVTIAAALHWF-DLPQFYKQVKWV 75 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rv 75 (213)
....+|+|+|+|+.+++.|++. ..+++..++. .+.+ ..+++||+|++..++++. ++..++.++.++
T Consensus 68 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~ 140 (233)
T PRK05134 68 RLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA-------EELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKL 140 (233)
T ss_pred HcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH-------HHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHH
Confidence 3456899999999999999862 2345655555 4443 345789999999999988 999999999999
Q ss_pred hcCCCeEEEEEeCC
Q 035840 76 LKKPNGVIAAWTYT 89 (213)
Q Consensus 76 Lk~pgG~l~~~~~~ 89 (213)
|+ |||.+++....
T Consensus 141 L~-~gG~l~v~~~~ 153 (233)
T PRK05134 141 VK-PGGLVFFSTLN 153 (233)
T ss_pred cC-CCcEEEEEecC
Confidence 99 99999876543
No 64
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.49 E-value=9.7e-07 Score=68.32 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=58.5
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCC-CCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNV-ATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
+.-+.+|+|++++.+..|.++ ++...++|++ +.++ ++|++||.|+.+++++-+ +|.+++.||.||-|
T Consensus 35 k~v~g~GvEid~~~v~~cv~r-Gv~Viq~Dld------~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 35 KQVDGYGVEIDPDNVAACVAR-GVSVIQGDLD------EGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred cCCeEEEEecCHHHHHHHHHc-CCCEEECCHH------HhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 345789999999999999987 6788898885 4453 899999999999999877 99999999999887
No 65
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.48 E-value=4.4e-07 Score=71.30 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=61.4
Q ss_pred ccCCeEEEEeCCHHHHHHhhcCC-CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Chh-----------HHH
Q 035840 3 KIYKNVIATDTSPKQLEFAIKLP-NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLP-----------QFY 69 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~~-~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~-----------~~~ 69 (213)
+.....+|+|+||.|+++|.+.. .-.+..++.- +.+||.+++||-|++-.+++|. +.. .+|
T Consensus 70 ~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG------~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF 143 (270)
T KOG1541|consen 70 DSGHQWIGVDISPSMLEQAVERELEGDLILCDMG------EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFF 143 (270)
T ss_pred cCCceEEeecCCHHHHHHHHHhhhhcCeeeeecC------CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHh
Confidence 44568999999999999999631 1234444442 8889999999999999999998 321 347
Q ss_pred HHHHHHhcCCCeEEEEEeCC
Q 035840 70 KQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~~~~ 89 (213)
..++.+|+ +|++..+..|-
T Consensus 144 ~tLy~~l~-rg~raV~QfYp 162 (270)
T KOG1541|consen 144 GTLYSCLK-RGARAVLQFYP 162 (270)
T ss_pred hhhhhhhc-cCceeEEEecc
Confidence 77999999 89998766654
No 66
>PRK04266 fibrillarin; Provisional
Probab=98.48 E-value=3.8e-07 Score=73.16 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=51.5
Q ss_pred CeEEEEeCCHHHHHHhh----cCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 6 KNVIATDTSPKQLEFAI----KLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar----~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
++|+|+|+|+.|++.+. +.+|+.+..+++... ....++. .+||+|++..+..| ....++.++.|+|| |||
T Consensus 97 g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~---~~~~~l~-~~~D~i~~d~~~p~-~~~~~L~~~~r~LK-pGG 170 (226)
T PRK04266 97 GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP---ERYAHVV-EKVDVIYQDVAQPN-QAEIAIDNAEFFLK-DGG 170 (226)
T ss_pred CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc---chhhhcc-ccCCEEEECCCChh-HHHHHHHHHHHhcC-CCc
Confidence 58999999999988543 347888888877310 0011233 45999996533222 12346899999999 999
Q ss_pred EEEEE
Q 035840 82 VIAAW 86 (213)
Q Consensus 82 ~l~~~ 86 (213)
.|++.
T Consensus 171 ~lvI~ 175 (226)
T PRK04266 171 YLLLA 175 (226)
T ss_pred EEEEE
Confidence 99873
No 67
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=1.3e-06 Score=71.77 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=62.9
Q ss_pred cccC-CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHH
Q 035840 2 AKIY-KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYK 70 (213)
Q Consensus 2 a~~~-~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~ 70 (213)
|+++ .+|+|+++|++|.+.|+++ .++++...+- .+ -++.||-|+|..+|+++ ..+..|+
T Consensus 91 A~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~-------rd---~~e~fDrIvSvgmfEhvg~~~~~~ff~ 160 (283)
T COG2230 91 AEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY-------RD---FEEPFDRIVSVGMFEHVGKENYDDFFK 160 (283)
T ss_pred HHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc-------cc---cccccceeeehhhHHHhCcccHHHHHH
Confidence 4454 7999999999999999982 2555555433 33 33349999999999988 4799999
Q ss_pred HHHHHhcCCCeEEEEEeCCCCC
Q 035840 71 QVKWVLKKPNGVIAAWTYTMPE 92 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~~~~ 92 (213)
.+.++|+ |||.+++.+...+.
T Consensus 161 ~~~~~L~-~~G~~llh~I~~~~ 181 (283)
T COG2230 161 KVYALLK-PGGRMLLHSITGPD 181 (283)
T ss_pred HHHhhcC-CCceEEEEEecCCC
Confidence 9999999 99999887766553
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.47 E-value=5.8e-07 Score=77.12 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=63.9
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Ch------hHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DL------PQFYKQV 72 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~------~~~~~e~ 72 (213)
..++|+|+++.|++.|.+ ..|+.+..+++. .+.. .++++++|.|++.....|. .+ +.++.++
T Consensus 147 ~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~----~ll~-~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~ 221 (390)
T PRK14121 147 KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDAR----LLLE-LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEA 221 (390)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH----Hhhh-hCCCCceeEEEEeCCCCccccchhhccHHHHHHHH
Confidence 589999999999999876 368889998882 1111 4789999999998777786 32 5899999
Q ss_pred HHHhcCCCeEEEEEeCCCC
Q 035840 73 KWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~~~~ 91 (213)
+|+|+ |||.+.+.+....
T Consensus 222 ~RvLk-pGG~l~l~TD~~~ 239 (390)
T PRK14121 222 LRVLK-PGGTLELRTDSEL 239 (390)
T ss_pred HHHcC-CCcEEEEEEECHH
Confidence 99999 9999988765533
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.45 E-value=4.8e-07 Score=71.91 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=53.9
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
++|+|+|++++|++.|++. .++++..+++ .....+++.||+|++..+++.+ ...+.+.|| |
T Consensus 102 ~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-------~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~Lk-p 168 (212)
T PRK13942 102 GKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-------TLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLK-D 168 (212)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-------ccCCCcCCCcCEEEECCCcccc-----hHHHHHhhC-C
Confidence 6999999999999999972 4688888887 5444566789999987766432 356788999 9
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
||++++-
T Consensus 169 gG~lvi~ 175 (212)
T PRK13942 169 GGIMVIP 175 (212)
T ss_pred CcEEEEE
Confidence 9998763
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.43 E-value=6.1e-07 Score=76.29 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=62.4
Q ss_pred CeEEEEeCCHHHHHHhhcC---C--CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC------ChhHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL---P--NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF------DLPQFYKQVKW 74 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~--~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~------d~~~~~~e~~r 74 (213)
.+|+|+|+|+.|++.|++. . ..++..+++ .. ..+++||+|+++-.||+. ....+++++.+
T Consensus 221 ~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~-------~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 221 IRLTLSDVSAAALESSRATLAANGLEGEVFASNV-------FS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVR 291 (342)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc-------cc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHH
Confidence 4899999999999999862 2 234444444 22 235679999999999973 34788999999
Q ss_pred HhcCCCeEEEEEeCCCCCcChHHHHhcc
Q 035840 75 VLKKPNGVIAAWTYTMPEINESVGAVFK 102 (213)
Q Consensus 75 vLk~pgG~l~~~~~~~~~~~~~~~~~~~ 102 (213)
.|| |||.|.+.........+.+++.+.
T Consensus 292 ~Lk-pgG~L~iVan~~l~y~~~l~~~Fg 318 (342)
T PRK09489 292 HLN-SGGELRIVANAFLPYPDLLDETFG 318 (342)
T ss_pred hcC-cCCEEEEEEeCCCChHHHHHHHcC
Confidence 999 999998876654433334444443
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.42 E-value=1e-06 Score=69.71 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=53.9
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk 77 (213)
.++|+|+|+|++|++.|++. .++++..+++ .+....+++||+|++..+++++ .+++.++||
T Consensus 97 ~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-------~~~~~~~~~fD~Ii~~~~~~~~-----~~~l~~~L~ 164 (205)
T PRK13944 97 RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-------KRGLEKHAPFDAIIVTAAASTI-----PSALVRQLK 164 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc-------ccCCccCCCccEEEEccCcchh-----hHHHHHhcC
Confidence 46999999999999999862 2477888877 4433456789999998887654 257899999
Q ss_pred CCCeEEEEE
Q 035840 78 KPNGVIAAW 86 (213)
Q Consensus 78 ~pgG~l~~~ 86 (213)
|||.|++-
T Consensus 165 -~gG~lvi~ 172 (205)
T PRK13944 165 -DGGVLVIP 172 (205)
T ss_pred -cCcEEEEE
Confidence 99999653
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.40 E-value=5e-07 Score=74.50 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~r 74 (213)
..+|+|+.+|++|.+.|+++ ..+++...+. .+++. +||.|++..++..+ +.+..++++.|
T Consensus 85 g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~-------~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~ 154 (273)
T PF02353_consen 85 GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY-------RDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISR 154 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G-------GG------S-SEEEEESEGGGTCGGGHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec-------cccCC---CCCEEEEEechhhcChhHHHHHHHHHHH
Confidence 56999999999999999862 3466666654 55433 89999999999888 56899999999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
+|| |||.+++....
T Consensus 155 ~Lk-pgG~~~lq~i~ 168 (273)
T PF02353_consen 155 LLK-PGGRLVLQTIT 168 (273)
T ss_dssp HSE-TTEEEEEEEEE
T ss_pred hcC-CCcEEEEEecc
Confidence 999 99999866544
No 73
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.37 E-value=1.4e-06 Score=69.61 Aligned_cols=87 Identities=13% Similarity=-0.035 Sum_probs=61.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC-----------CCceEEecCCCCcchhhccCCCC---CCceeeeeechhhccC---
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL-----------PNIRYQLTPPTMSITELEQNVAT---QSSVDLVTIAAALHWF--- 63 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~-----------~~v~~~~~~~~~~~~d~~~~~~~---~~sfDlV~~~~~~hw~--- 63 (213)
||.++.+|+|+|+|+.-++.+.+. ....+...++++..+||-+++.. .+.||+|+=..+|+-+
T Consensus 61 LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 61 FLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPND 140 (226)
T ss_pred HHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHH
Confidence 577888999999999999997551 00011222333333444666532 2579999988888877
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEeC
Q 035840 64 DLPQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 64 d~~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
.+.+..+.+.++|+ |||.+++.++
T Consensus 141 ~R~~Y~~~l~~lL~-pgg~llll~~ 164 (226)
T PRK13256 141 LRTNYAKMMLEVCS-NNTQILLLVM 164 (226)
T ss_pred HHHHHHHHHHHHhC-CCcEEEEEEE
Confidence 56678899999999 9999875543
No 74
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.36 E-value=1.3e-06 Score=72.25 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=55.6
Q ss_pred eEEEEeCCHHHHHHhhc--CC-----C------------------ceEEe-----cCCCCcchhhccCCCC-CCceeeee
Q 035840 7 NVIATDTSPKQLEFAIK--LP-----N------------------IRYQL-----TPPTMSITELEQNVAT-QSSVDLVT 55 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~--~~-----~------------------v~~~~-----~~~~~~~~d~~~~~~~-~~sfDlV~ 55 (213)
+|+|+|+|+.+|+.|++ ++ + -.|.+ ..+.+.+.++-+.+++ .+.||+|+
T Consensus 149 ~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~ 228 (287)
T PRK10611 149 KVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIF 228 (287)
T ss_pred EEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceee
Confidence 79999999999999997 11 0 00111 1112222233443332 57899999
Q ss_pred echhhccC---ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 56 IAAALHWF---DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 56 ~~~~~hw~---d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
|..++.++ ...+++..+++.|+ |||.| +.+..
T Consensus 229 cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L-~lG~s 263 (287)
T PRK10611 229 CRNVMIYFDKTTQERILRRFVPLLK-PDGLL-FAGHS 263 (287)
T ss_pred HhhHHhcCCHHHHHHHHHHHHHHhC-CCcEE-EEeCc
Confidence 99999888 46799999999999 99987 44444
No 75
>PTZ00146 fibrillarin; Provisional
Probab=98.35 E-value=1.6e-06 Score=71.68 Aligned_cols=75 Identities=19% Similarity=0.108 Sum_probs=54.1
Q ss_pred CeEEEEeCCHH----HHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 6 KNVIATDTSPK----QLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 6 ~~V~gvD~S~~----ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
.+|+|||+|+. |++.|+.++|+.+..+++..- ........+||+|++..+..| +...++.++.++|| |||
T Consensus 158 G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p----~~y~~~~~~vDvV~~Dva~pd-q~~il~~na~r~LK-pGG 231 (293)
T PTZ00146 158 GVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYP----QKYRMLVPMVDVIFADVAQPD-QARIVALNAQYFLK-NGG 231 (293)
T ss_pred CEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccCh----hhhhcccCCCCEEEEeCCCcc-hHHHHHHHHHHhcc-CCC
Confidence 58999999986 677777778999888887310 112223457999998775322 33455679999999 999
Q ss_pred EEEEE
Q 035840 82 VIAAW 86 (213)
Q Consensus 82 ~l~~~ 86 (213)
.|++.
T Consensus 232 ~~vI~ 236 (293)
T PTZ00146 232 HFIIS 236 (293)
T ss_pred EEEEE
Confidence 99873
No 76
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.34 E-value=3.1e-06 Score=72.71 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred CeEEEEeCCHHHHHHhhcC---------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC------hhHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL---------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD------LPQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d------~~~~~~ 70 (213)
.+|+++|+|+.|++.|++. .++++..+++ .+ .+++.+||+|+++--+|+.. ..+.+.
T Consensus 253 ~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~-------l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~ 324 (378)
T PRK15001 253 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA-------LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFH 324 (378)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc-------cc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHH
Confidence 5899999999999999962 1456666655 22 24556899999998888652 357889
Q ss_pred HHHHHhcCCCeEEEEEeCC
Q 035840 71 QVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~ 89 (213)
++.++|| |||.|.+....
T Consensus 325 ~a~~~Lk-pGG~L~iV~nr 342 (378)
T PRK15001 325 HARRCLK-INGELYIVANR 342 (378)
T ss_pred HHHHhcc-cCCEEEEEEec
Confidence 9999999 99999887544
No 77
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.33 E-value=2e-06 Score=72.79 Aligned_cols=80 Identities=18% Similarity=0.049 Sum_probs=60.7
Q ss_pred cCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhh--------ccC-C-hhH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL--------HWF-D-LPQ 67 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~--------hw~-d-~~~ 67 (213)
...+|+|+|+|+.|+..|++. .++.+..+|+ .++|+.+++||+|++.--+ +.. + ...
T Consensus 203 ~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-------~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~ 275 (329)
T TIGR01177 203 MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA-------TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYER 275 (329)
T ss_pred hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch-------hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHH
Confidence 356899999999999998862 3456667766 7788888899999985211 111 1 478
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCC
Q 035840 68 FYKQVKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~~~~~ 91 (213)
++.++.|+|| |||+++++.....
T Consensus 276 ~l~~~~r~Lk-~gG~lv~~~~~~~ 298 (329)
T TIGR01177 276 SLEEFHEVLK-SEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHcc-CCcEEEEEEcCCC
Confidence 9999999999 9999987765543
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.33 E-value=1.4e-06 Score=69.39 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=52.0
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
++|+|+|+++.|++.|++. .++++..+++ .+.....+.||+|++..+.. ...+.+.+.|| |
T Consensus 103 g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~-------~~~~~~~~~fD~Ii~~~~~~-----~~~~~~~~~L~-~ 169 (215)
T TIGR00080 103 GLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG-------TQGWEPLAPYDRIYVTAAGP-----KIPEALIDQLK-E 169 (215)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc-------ccCCcccCCCCEEEEcCCcc-----cccHHHHHhcC-c
Confidence 3599999999999999872 5788888887 44333456899999876543 34467889999 9
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
||+|++.
T Consensus 170 gG~lv~~ 176 (215)
T TIGR00080 170 GGILVMP 176 (215)
T ss_pred CcEEEEE
Confidence 9998754
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.33 E-value=1.3e-06 Score=68.04 Aligned_cols=79 Identities=25% Similarity=0.297 Sum_probs=59.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC---C--CceEEecCCCCcchhhccCCCCCCceeeeeechhhccCCh---hHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL---P--NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDL---PQFYKQV 72 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~---~--~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~---~~~~~e~ 72 (213)
||.++-.|+|+|.|+..++.+++. . +++..+.|. ++..++ +.+|+|++..+++++++ +..+..+
T Consensus 48 LA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-------~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m 119 (192)
T PF03848_consen 48 LASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-------NDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENM 119 (192)
T ss_dssp HHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-------CCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHH
T ss_pred HHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-------hhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHH
Confidence 577888999999999999987762 2 355555544 666664 57999999999999955 4678999
Q ss_pred HHHhcCCCeEEEEEeC
Q 035840 73 KWVLKKPNGVIAAWTY 88 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~ 88 (213)
...++ |||.+++.+.
T Consensus 120 ~~~~~-pGG~~li~~~ 134 (192)
T PF03848_consen 120 KAATK-PGGYNLIVTF 134 (192)
T ss_dssp HHTEE-EEEEEEEEEE
T ss_pred HhhcC-CcEEEEEEEe
Confidence 99999 9999876543
No 80
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.32 E-value=9.7e-07 Score=69.24 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=50.1
Q ss_pred eEEEEeCCHHHHHHhhcC----------------------------------CCceEEecCCCCcchhhccCCCCCCcee
Q 035840 7 NVIATDTSPKQLEFAIKL----------------------------------PNIRYQLTPPTMSITELEQNVATQSSVD 52 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~----------------------------------~~v~~~~~~~~~~~~d~~~~~~~~~sfD 52 (213)
+|+|+|+|+.+|+.|++- ..|+|...+. -+.+...+.||
T Consensus 66 ~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL-------~~~~~~~~~fD 138 (196)
T PF01739_consen 66 RILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNL-------LDPDPPFGRFD 138 (196)
T ss_dssp EEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--T-------T-S------EE
T ss_pred EEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEeccc-------CCCCcccCCcc
Confidence 899999999999999970 2466777665 33345567799
Q ss_pred eeeechhhccCCh---hHHHHHHHHHhcCCCeEEEE
Q 035840 53 LVTIAAALHWFDL---PQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 53 lV~~~~~~hw~d~---~~~~~e~~rvLk~pgG~l~~ 85 (213)
+|+|...+-++|. .++++.+++.|+ |||.|.+
T Consensus 139 ~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l 173 (196)
T PF01739_consen 139 LIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL 173 (196)
T ss_dssp EEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred EEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 9999999999944 688999999999 9999954
No 81
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.32 E-value=4.5e-06 Score=56.86 Aligned_cols=75 Identities=29% Similarity=0.396 Sum_probs=61.1
Q ss_pred cCCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCC-CCCceeeeeechhhcc-C-ChhHHHHHHHH
Q 035840 4 IYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVA-TQSSVDLVTIAAALHW-F-DLPQFYKQVKW 74 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~-~~~sfDlV~~~~~~hw-~-d~~~~~~e~~r 74 (213)
...+++|+|+|+.++..+++ ..++.+..++. .+... ..+++|+|++...+++ - +....++.+.+
T Consensus 20 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~ 92 (107)
T cd02440 20 PGARVTGVDISPVALELARKAAAALLADNVEVLKGDA-------EELPPEADESFDVIISDPPLHHLVEDLARFLEEARR 92 (107)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh-------hhhccccCCceEEEEEccceeehhhHHHHHHHHHHH
Confidence 45799999999999999882 24677777766 44432 5678999999999987 5 88999999999
Q ss_pred HhcCCCeEEEEE
Q 035840 75 VLKKPNGVIAAW 86 (213)
Q Consensus 75 vLk~pgG~l~~~ 86 (213)
.|+ |||.+++.
T Consensus 93 ~l~-~~g~~~~~ 103 (107)
T cd02440 93 LLK-PGGVLVLT 103 (107)
T ss_pred HcC-CCCEEEEE
Confidence 999 99999764
No 82
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.29 E-value=2.1e-06 Score=68.08 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=55.1
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWV 75 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rv 75 (213)
+....+|+++|+|++|++.|++. .++++..+++ .+...+.++||+|++..+++++ .+++.+.
T Consensus 97 a~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~-------~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~ 164 (212)
T PRK00312 97 AHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG-------WKGWPAYAPFDRILVTAAAPEI-----PRALLEQ 164 (212)
T ss_pred HHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc-------ccCCCcCCCcCEEEEccCchhh-----hHHHHHh
Confidence 34456899999999999999872 4677888776 3322234789999998877654 3567899
Q ss_pred hcCCCeEEEEEeC
Q 035840 76 LKKPNGVIAAWTY 88 (213)
Q Consensus 76 Lk~pgG~l~~~~~ 88 (213)
|+ |||.+++...
T Consensus 165 L~-~gG~lv~~~~ 176 (212)
T PRK00312 165 LK-EGGILVAPVG 176 (212)
T ss_pred cC-CCcEEEEEEc
Confidence 99 9999876443
No 83
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.29 E-value=2.9e-06 Score=66.92 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=59.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC-----CC-ceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL-----PN-IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQ 71 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~-----~~-v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e 71 (213)
|.+.|.+|--|||++..++.|++. ++ .++.+... +++..+++++|+|++.+++.+. |.-.+|+.
T Consensus 74 Ll~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL-------Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~R 146 (218)
T PF05891_consen 74 LLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL-------QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKR 146 (218)
T ss_dssp CCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G-------GG----TT-EEEEEEES-GGGS-HHHHHHHHHH
T ss_pred HHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH-------hhccCCCCcEeEEEehHhhccCCHHHHHHHHHH
Confidence 678999999999999999999962 23 23555544 7776667899999999999888 77899999
Q ss_pred HHHHhcCCCeEEEEEeC
Q 035840 72 VKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 72 ~~rvLk~pgG~l~~~~~ 88 (213)
+...|+ |||.+++=.+
T Consensus 147 Ck~~L~-~~G~IvvKEN 162 (218)
T PF05891_consen 147 CKQALK-PNGVIVVKEN 162 (218)
T ss_dssp HHHHEE-EEEEEEEEEE
T ss_pred HHHhCc-CCcEEEEEec
Confidence 999999 9999986544
No 84
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.26 E-value=3.3e-06 Score=64.76 Aligned_cols=74 Identities=27% Similarity=0.361 Sum_probs=55.0
Q ss_pred eEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C-----hhHHHHHHHH
Q 035840 7 NVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D-----LPQFYKQVKW 74 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d-----~~~~~~e~~r 74 (213)
+|+++|+|+.+++.|++. .++++..++. ++. .++++||+|+++==+|.- + ....+.++.+
T Consensus 57 ~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~------~~~--~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 57 KVTAVDINPDALELAKRNAERNGLENVEVVQSDL------FEA--LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST------TTT--CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCccccccccccc------ccc--ccccceeEEEEccchhcccccchhhHHHHHHHHHH
Confidence 599999999999999871 3367777765 133 447889999998766655 3 4788899999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
.|| |||.|.+....
T Consensus 129 ~Lk-~~G~l~lv~~~ 142 (170)
T PF05175_consen 129 YLK-PGGRLFLVINS 142 (170)
T ss_dssp HEE-EEEEEEEEEET
T ss_pred hcc-CCCEEEEEeec
Confidence 999 99999755443
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.24 E-value=4.1e-06 Score=65.81 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhcc-CCCCCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQ-NVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~-~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
..+|+|+|+|+.|++.|++. .++.+..+++ .+ ++..+++||+|++.. ..-+...++.++.++|
T Consensus 65 ~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~-------~~~l~~~~~~~D~V~~~~--~~~~~~~~l~~~~~~L 135 (198)
T PRK00377 65 TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA-------PEILFTINEKFDRIFIGG--GSEKLKEIISASWEII 135 (198)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech-------hhhHhhcCCCCCEEEECC--CcccHHHHHHHHHHHc
Confidence 46899999999999998762 3567777766 33 222346799999854 2337789999999999
Q ss_pred cCCCeEEEEEe
Q 035840 77 KKPNGVIAAWT 87 (213)
Q Consensus 77 k~pgG~l~~~~ 87 (213)
| |||.+++..
T Consensus 136 k-pgG~lv~~~ 145 (198)
T PRK00377 136 K-KGGRIVIDA 145 (198)
T ss_pred C-CCcEEEEEe
Confidence 9 999997633
No 86
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.24 E-value=3e-06 Score=70.92 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=53.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----CCc--eEEecCCCCcchhhcc-CCCCCC----ceeeeeechhhccCC---hhHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----PNI--RYQLTPPTMSITELEQ-NVATQS----SVDLVTIAAALHWFD---LPQFY 69 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----~~v--~~~~~~~~~~~~d~~~-~~~~~~----sfDlV~~~~~~hw~d---~~~~~ 69 (213)
..+|+|+|+|++||+.|+++ +++ .+.+++. .+ .++... ...++++..++++++ ...++
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~-------~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L 160 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLEVHGICADF-------TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFL 160 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc-------cchhhhhcccccCCeEEEEecccccCCCHHHHHHHH
Confidence 46899999999999999863 444 4456665 32 233222 344566777888885 45679
Q ss_pred HHHHHHhcCCCeEEEEE
Q 035840 70 KQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~ 86 (213)
++++++|+ |||.|++-
T Consensus 161 ~~i~~~L~-pgG~~lig 176 (301)
T TIGR03438 161 RRIRQLLG-PGGGLLIG 176 (301)
T ss_pred HHHHHhcC-CCCEEEEe
Confidence 99999999 99999753
No 87
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.23 E-value=1.8e-07 Score=73.86 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=60.9
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCc-eEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCe
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNI-RYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v-~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG 81 (213)
..++.+|+|+|++|++.|.++..- ...++++. .|.. ...+..||+|++...+.++ +.+..+.-+...|+ |||
T Consensus 146 ~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~----~Fl~-~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gG 219 (287)
T COG4976 146 MADRLTGVDISENMLAKAHEKGLYDTLYVAEAV----LFLE-DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGG 219 (287)
T ss_pred HHhhccCCchhHHHHHHHHhccchHHHHHHHHH----HHhh-hccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCc
Confidence 356899999999999999986321 12333331 1111 1456779999999999999 99999999999999 999
Q ss_pred EEEEEeCC
Q 035840 82 VIAAWTYT 89 (213)
Q Consensus 82 ~l~~~~~~ 89 (213)
.|+++.-.
T Consensus 220 lfaFSvE~ 227 (287)
T COG4976 220 LFAFSVET 227 (287)
T ss_pred eEEEEecc
Confidence 99987543
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.22 E-value=4.4e-06 Score=65.03 Aligned_cols=71 Identities=27% Similarity=0.316 Sum_probs=51.9
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccC--------CCCCCceeeeeechhh----ccC-Ch-------
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQN--------VATQSSVDLVTIAAAL----HWF-DL------- 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~--------~~~~~sfDlV~~~~~~----hw~-d~------- 65 (213)
++|+|+|+|+.| ..+++.+..+++ .+. .+++++||+|++..+. +|. ++
T Consensus 58 ~~v~~vDis~~~-----~~~~i~~~~~d~-------~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~ 125 (188)
T TIGR00438 58 GRVIAVDLQPMK-----PIENVDFIRGDF-------TDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLV 125 (188)
T ss_pred ceEEEEeccccc-----cCCCceEEEeeC-------CChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHH
Confidence 479999999976 336788887766 222 1456789999986543 243 33
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
..++.++.++|+ |||.+++..+.
T Consensus 126 ~~~l~~~~~~Lk-pgG~lvi~~~~ 148 (188)
T TIGR00438 126 ELALDIAKEVLK-PKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHcc-CCCEEEEEEcc
Confidence 689999999999 99999876544
No 89
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.22 E-value=1.2e-06 Score=68.49 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=39.3
Q ss_pred CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 36 MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 36 ~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
++..|+..+|++++++|+++++.|++-.|....+.|+.|+|| |||.|.|....
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK-~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK-PGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec-cCcEEEEEEec
Confidence 334466999999999999999999999999999999999999 99999988755
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.22 E-value=6e-06 Score=66.05 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=53.9
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-----------------
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF----------------- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~----------------- 63 (213)
++|+|+|+|+.|++.|++. .++.+..++. .+. +++++||+|+++--++..
T Consensus 60 ~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~-------~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~ 131 (223)
T PRK14967 60 GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW-------ARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG 131 (223)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch-------hhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCC
Confidence 4999999999999998862 2355556555 442 567789999987533321
Q ss_pred -----ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 64 -----DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 64 -----d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
....++.++.++|| |||.+++....
T Consensus 132 ~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~ 161 (223)
T PRK14967 132 PDGRAVLDRLCDAAPALLA-PGGSLLLVQSE 161 (223)
T ss_pred CcHHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence 13567889999999 99999865433
No 91
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=4.1e-06 Score=66.68 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=61.6
Q ss_pred eEEEEeCCHHHHHHhhcCC-----CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhcC
Q 035840 7 NVIATDTSPKQLEFAIKLP-----NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLKK 78 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~-----~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~ 78 (213)
.|+++|.||..++.-++.+ ++.-.+.|.. .+-..-|.+.+++|+|++-+.+.=+ ....++++++++||
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt---~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llK- 174 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT---SPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLK- 174 (264)
T ss_pred EEEEcCCChHHHHHHHhccccchhhhcccceecc---chhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhC-
Confidence 6999999999999988741 1221122221 1112336788999999988877655 66889999999999
Q ss_pred CCeEEEEEeCCCCCc
Q 035840 79 PNGVIAAWTYTMPEI 93 (213)
Q Consensus 79 pgG~l~~~~~~~~~~ 93 (213)
|||.|++.+|+..++
T Consensus 175 PGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 175 PGGSLLFRDYGRYDL 189 (264)
T ss_pred CCcEEEEeecccchH
Confidence 999999999997654
No 92
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.17 E-value=9.5e-06 Score=63.06 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=53.7
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
.+|+|+|+|+.|++.|++. .++++..+++ .. ++ +++||+|++..+.+ .....+.++.++|+ |
T Consensus 56 ~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-------~~-~~-~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk-~ 123 (187)
T PRK08287 56 LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA-------PI-EL-PGKADAIFIGGSGG--NLTAIIDWSLAHLH-P 123 (187)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-------hh-hc-CcCCCEEEECCCcc--CHHHHHHHHHHhcC-C
Confidence 5899999999999999862 4577777665 21 23 35799999876543 45678999999999 9
Q ss_pred CeEEEEEe
Q 035840 80 NGVIAAWT 87 (213)
Q Consensus 80 gG~l~~~~ 87 (213)
||.+++..
T Consensus 124 gG~lv~~~ 131 (187)
T PRK08287 124 GGRLVLTF 131 (187)
T ss_pred CeEEEEEE
Confidence 99997643
No 93
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.16 E-value=5.6e-06 Score=66.88 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=60.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKP 79 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~p 79 (213)
|++.|++|+++|.|+.|+..-+++ +.+ +-+. .+|.-.+.+||+|.|...+-=+ +|...++++++.|+ |
T Consensus 112 l~~~f~~v~aTE~S~~Mr~rL~~k-g~~--vl~~-------~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p 180 (265)
T PF05219_consen 112 LAPLFKEVYATEASPPMRWRLSKK-GFT--VLDI-------DDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALK-P 180 (265)
T ss_pred HHhhcceEEeecCCHHHHHHHHhC-CCe--EEeh-------hhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhC-C
Confidence 478899999999999999998875 333 3333 3344456789999999999666 89999999999999 9
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
+|.+++.
T Consensus 181 ~G~lilA 187 (265)
T PF05219_consen 181 NGRLILA 187 (265)
T ss_pred CCEEEEE
Confidence 9998643
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.15 E-value=2.5e-06 Score=60.87 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=56.3
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccC---------ChhH
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWF---------DLPQ 67 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~---------d~~~ 67 (213)
.+|+|+|++|..++.|++. .++++.+++. .+.. +++++||+|+++-=+.-. ....
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~-------~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~ 96 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA-------RDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSR 96 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH-------HHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch-------hhchhhccCceeEEEEECCCCccccccchhhHHHHHH
Confidence 7999999999999999972 4577888766 4443 788999999986666421 2357
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 035840 68 FYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~ 87 (213)
+++++.++|| |||.+.++.
T Consensus 97 ~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 97 FLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp HHHHHHHHEE-EEEEEEEEE
T ss_pred HHHHHHHHcC-CCeEEEEEe
Confidence 7999999999 999998653
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=98.15 E-value=8e-06 Score=63.06 Aligned_cols=77 Identities=23% Similarity=0.215 Sum_probs=54.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC------CC--ceEEecCCCCcchhhccCCCCCCceeeeeechhhcc-----------
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL------PN--IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW----------- 62 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~------~~--v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw----------- 62 (213)
+....+|+|+|+|+.|++.|++. .+ +.+..++. .+ ++.+++||+|+++-.+..
T Consensus 42 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-------~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~ 113 (188)
T PRK14968 42 AKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL-------FE-PFRGDKFDVILFNPPYLPTEEEEEWDDWL 113 (188)
T ss_pred HhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc-------cc-cccccCceEEEECCCcCCCCchhhhhhhh
Confidence 34468999999999999999762 22 66776655 33 345558999997644322
Q ss_pred -------CC----hhHHHHHHHHHhcCCCeEEEEEe
Q 035840 63 -------FD----LPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 63 -------~d----~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.+ ...+++++.++|| |||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~ 148 (188)
T PRK14968 114 NYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQ 148 (188)
T ss_pred hhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence 11 3567899999999 999987653
No 96
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.14 E-value=9.3e-06 Score=68.03 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=56.7
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C--hhHHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D--LPQFYKQVKWV 75 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d--~~~~~~e~~rv 75 (213)
.+|+++|. |.|++.|++. ++++++.+++ .+.++++ +|+|+++..+|.. + ...++++++++
T Consensus 174 ~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~-------~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~ 243 (306)
T TIGR02716 174 LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI-------YKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDA 243 (306)
T ss_pred CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc-------cCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHh
Confidence 47999997 8999998862 3577777776 4444543 6999999999855 3 25789999999
Q ss_pred hcCCCeEEEEEeCC
Q 035840 76 LKKPNGVIAAWTYT 89 (213)
Q Consensus 76 Lk~pgG~l~~~~~~ 89 (213)
|| |||+|++.+..
T Consensus 244 L~-pgG~l~i~d~~ 256 (306)
T TIGR02716 244 MR-SGGRLLILDMV 256 (306)
T ss_pred cC-CCCEEEEEEec
Confidence 99 99999988753
No 97
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.13 E-value=8.1e-06 Score=65.71 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=45.9
Q ss_pred hhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 39 TELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 39 ~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
.|+...|++|+|+|++++|.|++-.|...++.|+.|||| |||.+.|....
T Consensus 217 cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk-~gG~l~IAEv~ 266 (325)
T KOG3045|consen 217 CDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILK-PGGLLYIAEVK 266 (325)
T ss_pred ccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhc-cCceEEEEehh
Confidence 355889999999999999999999999999999999999 99999887654
No 98
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.13 E-value=6e-06 Score=66.00 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=52.2
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQ 71 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e 71 (213)
++...+|+|+|+|+.|++.|++. .++.+..++. + ..+++||+|++..++|++ +...++++
T Consensus 82 ~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-------~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~ 151 (230)
T PRK07580 82 ARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-------E---SLLGRFDTVVCLDVLIHYPQEDAARMLAH 151 (230)
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-------h---hccCCcCEEEEcchhhcCCHHHHHHHHHH
Confidence 44567899999999999999973 2466777554 3 346789999999999654 44567788
Q ss_pred HHHHhcCCCeEE
Q 035840 72 VKWVLKKPNGVI 83 (213)
Q Consensus 72 ~~rvLk~pgG~l 83 (213)
+.+.++ +++.+
T Consensus 152 l~~~~~-~~~~i 162 (230)
T PRK07580 152 LASLTR-GSLIF 162 (230)
T ss_pred HHhhcC-CeEEE
Confidence 888766 45444
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.10 E-value=1.2e-05 Score=66.79 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=52.8
Q ss_pred CeEEEEeCCHHHHHHhhcC---CC----ceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIKL---PN----IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~----v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
.+|+|+|+|+.|++.|++. .+ +.+..++. .+..+++||+|+++...+. ...+++++.++||
T Consensus 183 ~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~---------~~~~~~~fDlVvan~~~~~--l~~ll~~~~~~Lk- 250 (288)
T TIGR00406 183 AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL---------EQPIEGKADVIVANILAEV--IKELYPQFSRLVK- 250 (288)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc---------ccccCCCceEEEEecCHHH--HHHHHHHHHHHcC-
Confidence 5899999999999999973 12 22232221 2244678999998765543 3578899999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
|||.|++....
T Consensus 251 pgG~li~sgi~ 261 (288)
T TIGR00406 251 PGGWLILSGIL 261 (288)
T ss_pred CCcEEEEEeCc
Confidence 99999887654
No 100
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.09 E-value=9.4e-06 Score=68.24 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=48.3
Q ss_pred cccCCeEEEEeCCHHHHHHhhcCC-----------CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C--hhH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKLP-----------NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D--LPQ 67 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~~-----------~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d--~~~ 67 (213)
++...+|+|+|+|+.|++.|+++. ++.|..++. +++ +++||+|++..+++++ + ...
T Consensus 163 a~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl-------~~l---~~~fD~Vv~~~vL~H~p~~~~~~ 232 (315)
T PLN02585 163 ALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL-------ESL---SGKYDTVTCLDVLIHYPQDKADG 232 (315)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch-------hhc---CCCcCEEEEcCEEEecCHHHHHH
Confidence 455679999999999999998741 245555554 443 5789999999998666 3 223
Q ss_pred HHHHHHHHhcCCCeEEE
Q 035840 68 FYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~ 84 (213)
.+..+.+ +. +||.++
T Consensus 233 ll~~l~~-l~-~g~liI 247 (315)
T PLN02585 233 MIAHLAS-LA-EKRLII 247 (315)
T ss_pred HHHHHHh-hc-CCEEEE
Confidence 4555554 46 565543
No 101
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.05 E-value=7.8e-06 Score=69.15 Aligned_cols=83 Identities=24% Similarity=0.234 Sum_probs=54.7
Q ss_pred cCCeEEEEeCCHHHHHHhhcCC----------------CceEEecCCCCcchhhccC-CCCCCceeeeeechhhccC--C
Q 035840 4 IYKNVIATDTSPKQLEFAIKLP----------------NIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWF--D 64 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~----------------~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~--d 64 (213)
..++++|+|||+.-|++|+++- ...|..+++- ...+.+. +.....||+|.|.+|+|++ .
T Consensus 84 ~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f--~~~l~~~~~~~~~~FDvVScQFalHY~Fes 161 (331)
T PF03291_consen 84 KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF--SESLREKLPPRSRKFDVVSCQFALHYAFES 161 (331)
T ss_dssp T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC--CSHHHCTSSSTTS-EEEEEEES-GGGGGSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc--cchhhhhccccCCCcceeehHHHHHHhcCC
Confidence 3578999999999999999731 2345555551 1122222 2223589999999999977 2
Q ss_pred h---hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 65 L---PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 65 ~---~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
. ..++.++...|| |||.|+....+
T Consensus 162 e~~ar~~l~Nvs~~Lk-~GG~FIgT~~d 188 (331)
T PF03291_consen 162 EEKARQFLKNVSSLLK-PGGYFIGTTPD 188 (331)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhcC-CCCEEEEEecC
Confidence 2 347789999999 99999765544
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.04 E-value=2.3e-05 Score=61.42 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
..+|+|+|+|+.|++.|++. .++++..+++. +.++.....+|.++.... -+...++.++.++|+
T Consensus 64 ~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~------~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~Lk- 133 (196)
T PRK07402 64 KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP------ECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLK- 133 (196)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH------HHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcC-
Confidence 36999999999999999862 46788887772 111111223566654321 166899999999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
|||.+++....
T Consensus 134 pgG~li~~~~~ 144 (196)
T PRK07402 134 PGGRLVATASS 144 (196)
T ss_pred CCeEEEEEeec
Confidence 99999877654
No 103
>PRK00811 spermidine synthase; Provisional
Probab=98.03 E-value=1.7e-05 Score=65.75 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=56.4
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----------CCceEEecCCCCcchhhccC-CCCCCceeeeeechhhccC-C----hhH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWF-D----LPQ 67 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~-d----~~~ 67 (213)
..+|++||+++.|++.|+++ +++++..+|+ ..+ ...+++||+|++-.+-++. . ...
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da-------~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~e 172 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG-------IKFVAETENSFDVIIVDSTDPVGPAEGLFTKE 172 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch-------HHHHhhCCCcccEEEECCCCCCCchhhhhHHH
Confidence 46899999999999999972 3567777777 322 2346789999986544443 1 256
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 035840 68 FYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~ 87 (213)
+++.+.+.|+ |||.++++.
T Consensus 173 f~~~~~~~L~-~gGvlv~~~ 191 (283)
T PRK00811 173 FYENCKRALK-EDGIFVAQS 191 (283)
T ss_pred HHHHHHHhcC-CCcEEEEeC
Confidence 7899999999 999997753
No 104
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.01 E-value=2.7e-05 Score=62.98 Aligned_cols=72 Identities=22% Similarity=0.193 Sum_probs=53.5
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc------C----------
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW------F---------- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw------~---------- 63 (213)
.+|+|+|+|+.|++.|++. +++.+..+++ .+ ++++++||+|+++--++. +
T Consensus 112 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~-------~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~ 183 (251)
T TIGR03534 112 ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW-------FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPR 183 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch-------hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCH
Confidence 4899999999999999862 3577778776 44 356788999998432211 1
Q ss_pred -----------ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 64 -----------DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 64 -----------d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
....+++++.++|+ |||.+++.
T Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~ 216 (251)
T TIGR03534 184 LALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLE 216 (251)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEE
Confidence 12367899999999 99998764
No 105
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.00 E-value=1e-05 Score=67.05 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=58.7
Q ss_pred CCeEEEEeCCHHHHHHhhcC--------C----CceEEecCCCCcchhhc-cCCCCCCceeeeeechhhccC-----Chh
Q 035840 5 YKNVIATDTSPKQLEFAIKL--------P----NIRYQLTPPTMSITELE-QNVATQSSVDLVTIAAALHWF-----DLP 66 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~--------~----~v~~~~~~~~~~~~d~~-~~~~~~~sfDlV~~~~~~hw~-----d~~ 66 (213)
.++++|+|+++..|++|+++ . .+.|.++|+. ...+. -+++.+.+||+|-|.+|+|+. -..
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~--~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF--KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc--hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 56899999999999999973 1 3567777661 12222 224566669999999999965 345
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 035840 67 QFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 67 ~~~~e~~rvLk~pgG~l~~ 85 (213)
.++.++.+.|| |||.|+-
T Consensus 218 ~~l~Nva~~Lk-pGG~FIg 235 (389)
T KOG1975|consen 218 IALRNVAKCLK-PGGVFIG 235 (389)
T ss_pred HHHHHHHhhcC-CCcEEEE
Confidence 67899999999 9999854
No 106
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.99 E-value=8.4e-06 Score=65.05 Aligned_cols=76 Identities=22% Similarity=0.176 Sum_probs=54.7
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------------------CCceEEecCCCCcchhhccCCCCC-Cceeeeeechhhc
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------------------PNIRYQLTPPTMSITELEQNVATQ-SSVDLVTIAAALH 61 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------------------~~v~~~~~~~~~~~~d~~~~~~~~-~sfDlV~~~~~~h 61 (213)
||.++.+|+|+|+|+..++.|.+. .+|++.++|. -+++... ++||+|+=..+|+
T Consensus 55 La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf-------F~l~~~~~g~fD~iyDr~~l~ 127 (218)
T PF05724_consen 55 LAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF-------FELPPEDVGKFDLIYDRTFLC 127 (218)
T ss_dssp HHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T-------TTGGGSCHHSEEEEEECSSTT
T ss_pred HHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc-------ccCChhhcCCceEEEEecccc
Confidence 467788999999999999998431 1234455444 5554333 5799999777776
Q ss_pred cC---ChhHHHHHHHHHhcCCCeEEE
Q 035840 62 WF---DLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 62 w~---d~~~~~~e~~rvLk~pgG~l~ 84 (213)
-+ .+++-.+.+.++|+ |||.++
T Consensus 128 Alpp~~R~~Ya~~l~~ll~-p~g~~l 152 (218)
T PF05724_consen 128 ALPPEMRERYAQQLASLLK-PGGRGL 152 (218)
T ss_dssp TS-GGGHHHHHHHHHHCEE-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhC-CCCcEE
Confidence 66 66788899999999 999944
No 107
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=3.7e-05 Score=67.50 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC-CCCCceeeeee---chhhccC--Ch-------
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV-ATQSSVDLVTI---AAALHWF--DL------- 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~~---~~~~hw~--d~------- 65 (213)
.++|+|+|+|+.|++.+++. .++++..+++ ..++ +.+++||.|++ +.++..+ ++
T Consensus 262 ~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-------~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~ 334 (431)
T PRK14903 262 QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA-------ERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVN 334 (431)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch-------hhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCC
Confidence 46999999999999999872 4567777777 4444 44678999994 4444433 22
Q ss_pred -----------hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 66 -----------PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 66 -----------~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
.+.+.++.+.|| |||.++..+..
T Consensus 335 ~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs 368 (431)
T PRK14903 335 KEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCT 368 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence 456889999999 99998765443
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=4.2e-05 Score=67.41 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=55.6
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeee---chhh---------ccC-Ch
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTI---AAAL---------HWF-DL 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~---~~~~---------hw~-d~ 65 (213)
.++|+|+|+|+.|++.+++. .++++..+++ ..++ ++++||.|++ +.+. .|. ++
T Consensus 275 ~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da-------~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~ 346 (445)
T PRK14904 275 RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA-------RSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTP 346 (445)
T ss_pred CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc-------cccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCH
Confidence 46899999999999999872 4577888777 5543 5678999994 2221 133 22
Q ss_pred ----------hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 66 ----------PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 66 ----------~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
.+.+.++.++|| |||.+++.+..
T Consensus 347 ~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs 379 (445)
T PRK14904 347 EKLAELVGLQAELLDHAASLLK-PGGVLVYATCS 379 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 357999999999 99999866543
No 109
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=3.6e-05 Score=64.93 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=51.4
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
++|+|+|+|++|++.|++ ..++.+..+++ .+.+.+.++||+|++..+.+- ....+.+.|+ |
T Consensus 106 g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~-------~~~~~~~~~fD~Ii~~~g~~~-----ip~~~~~~Lk-p 172 (322)
T PRK13943 106 GLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG-------YYGVPEFAPYDVIFVTVGVDE-----VPETWFTQLK-E 172 (322)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh-------hhcccccCCccEEEECCchHH-----hHHHHHHhcC-C
Confidence 369999999999999986 24677888776 444445567999998866542 2345788999 9
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
||.+++.
T Consensus 173 gG~Lvv~ 179 (322)
T PRK13943 173 GGRVIVP 179 (322)
T ss_pred CCEEEEE
Confidence 9998764
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.90 E-value=2.6e-05 Score=63.54 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=49.1
Q ss_pred CeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 6 KNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
.+|+|+|+|+.|++.|++. .++. .. -..+..+.+||+|+++...+. ....++++.++|| |||.
T Consensus 143 ~~v~giDis~~~l~~A~~n~~~~~~~---~~--------~~~~~~~~~fD~Vvani~~~~--~~~l~~~~~~~Lk-pgG~ 208 (250)
T PRK00517 143 KKVLAVDIDPQAVEAARENAELNGVE---LN--------VYLPQGDLKADVIVANILANP--LLELAPDLARLLK-PGGR 208 (250)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCC---ce--------EEEccCCCCcCEEEEcCcHHH--HHHHHHHHHHhcC-CCcE
Confidence 3699999999999999973 2221 00 111122337999998755433 3567899999999 9999
Q ss_pred EEEEeCC
Q 035840 83 IAAWTYT 89 (213)
Q Consensus 83 l~~~~~~ 89 (213)
+++....
T Consensus 209 lilsgi~ 215 (250)
T PRK00517 209 LILSGIL 215 (250)
T ss_pred EEEEECc
Confidence 9887654
No 111
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=1.3e-05 Score=65.40 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=64.1
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC----ChhHHHHHHHHHhcCCCeE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF----DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~----d~~~~~~e~~rvLk~pgG~ 82 (213)
.++|+|.+...+..|++........+++ -.+|+.+.+||.+++...+||+ -+..+++|+.|+|| |||.
T Consensus 67 ~~ig~D~c~~l~~~ak~~~~~~~~~ad~-------l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~ 138 (293)
T KOG1331|consen 67 LIIGCDLCTGLLGGAKRSGGDNVCRADA-------LKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGN 138 (293)
T ss_pred eeeecchhhhhccccccCCCceeehhhh-------hcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCc
Confidence 4899999999999999764434566666 8899999999999999999988 56789999999999 9999
Q ss_pred EEEEeCC
Q 035840 83 IAAWTYT 89 (213)
Q Consensus 83 l~~~~~~ 89 (213)
..++.+.
T Consensus 139 ~lvyvwa 145 (293)
T KOG1331|consen 139 ALVYVWA 145 (293)
T ss_pred eEEEEeh
Confidence 8777665
No 112
>PRK01581 speE spermidine synthase; Validated
Probab=97.87 E-value=4.5e-05 Score=64.96 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc------CCh
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW------FDL 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw------~d~ 65 (213)
..+|++||++++|++.|++. +++++..+|+- +-+.-.+++||+|++-..-.. .--
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~------~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT 247 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK------EFLSSPSSLYDVIIIDFPDPATELLSTLYT 247 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH------HHHHhcCCCccEEEEcCCCccccchhhhhH
Confidence 36999999999999999951 46777777771 212334567999997732111 122
Q ss_pred hHHHHHHHHHhcCCCeEEEEEe
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
..+++.+.+.|+ |||.++++.
T Consensus 248 ~EFy~~~~~~Lk-PgGV~V~Qs 268 (374)
T PRK01581 248 SELFARIATFLT-EDGAFVCQS 268 (374)
T ss_pred HHHHHHHHHhcC-CCcEEEEec
Confidence 568899999999 999997764
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.87 E-value=5.3e-05 Score=62.90 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=51.0
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeec------h-------hhccCCh
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIA------A-------ALHWFDL 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~------~-------~~hw~d~ 65 (213)
.+|+|+|+|+.|++.|++. .++++..+++ .+ ++++++||+|+++ . .+++ ++
T Consensus 146 ~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~-------~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~-ep 216 (284)
T TIGR03533 146 AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL-------FA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHH-EP 216 (284)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch-------hh-ccCCCCccEEEECCCCCCccchhhCCHhhhc-CH
Confidence 5899999999999999972 2477788776 22 2455689999985 0 1111 22
Q ss_pred --------------hHHHHHHHHHhcCCCeEEEE
Q 035840 66 --------------PQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 66 --------------~~~~~e~~rvLk~pgG~l~~ 85 (213)
...+.++.++|+ |||.+++
T Consensus 217 ~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~ 249 (284)
T TIGR03533 217 ELALASGEDGLDLVRRILAEAADHLN-ENGVLVV 249 (284)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 456888999999 9999865
No 114
>PRK04457 spermidine synthase; Provisional
Probab=97.85 E-value=4.1e-05 Score=62.83 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=54.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc------CChhHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW------FDLPQFYKQV 72 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw------~d~~~~~~e~ 72 (213)
.+|+++|++|.|++.|++. +++++..+|+. +-+.-.+++||+|++- +++- +....+++++
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~------~~l~~~~~~yD~I~~D-~~~~~~~~~~l~t~efl~~~ 163 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA------EYIAVHRHSTDVILVD-GFDGEGIIDALCTQPFFDDC 163 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH------HHHHhCCCCCCEEEEe-CCCCCCCccccCcHHHHHHH
Confidence 5899999999999999973 45778888772 1112224679999964 2221 2347999999
Q ss_pred HHHhcCCCeEEEEEeC
Q 035840 73 KWVLKKPNGVIAAWTY 88 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~ 88 (213)
.++|+ |||.+++-.+
T Consensus 164 ~~~L~-pgGvlvin~~ 178 (262)
T PRK04457 164 RNALS-SDGIFVVNLW 178 (262)
T ss_pred HHhcC-CCcEEEEEcC
Confidence 99999 9999987433
No 115
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.82 E-value=8e-05 Score=61.65 Aligned_cols=76 Identities=24% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCeEEEEeCCHHHHHHhhc---C---CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIK---L---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~---~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
.+.|+|+|||+--..+++. . ....+...- .+|++|. .++||+|+|.-.+.+. +|-..+.++...|+
T Consensus 138 A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl------gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~ 210 (315)
T PF08003_consen 138 AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL------GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR 210 (315)
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc------chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhC
Confidence 4579999999998888664 1 222233321 1388887 7889999999999766 99999999999999
Q ss_pred CCCeEEEEEeC
Q 035840 78 KPNGVIAAWTY 88 (213)
Q Consensus 78 ~pgG~l~~~~~ 88 (213)
|||.|++-+.
T Consensus 211 -~gGeLvLETl 220 (315)
T PF08003_consen 211 -PGGELVLETL 220 (315)
T ss_pred -CCCEEEEEEe
Confidence 9999986554
No 116
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.82 E-value=6.2e-05 Score=62.46 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=51.5
Q ss_pred CeEEEEeCCHHHHHHhhcC------C-CceEEecCCCCcchhhccCCCCCCceeeeeec-------------hhhccC--
Q 035840 6 KNVIATDTSPKQLEFAIKL------P-NIRYQLTPPTMSITELEQNVATQSSVDLVTIA-------------AALHWF-- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~-~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~-------------~~~hw~-- 63 (213)
.+|+|+|+|+.+++.|++. . ++++..++. .+ ++++++||+|+++ ...+|-
T Consensus 139 ~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~-------~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~ 210 (284)
T TIGR00536 139 AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL-------FE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPL 210 (284)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch-------hc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcH
Confidence 4899999999999999972 2 377888776 33 3445579999985 112221
Q ss_pred -----------ChhHHHHHHHHHhcCCCeEEEE
Q 035840 64 -----------DLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 64 -----------d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.....+.++.+.|+ |||.+++
T Consensus 211 ~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~ 242 (284)
T TIGR00536 211 LALVGGDDGLNILRQIIELAPDYLK-PNGFLVC 242 (284)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence 23467788999999 9999864
No 117
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.81 E-value=8.5e-05 Score=65.30 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=54.4
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC----CCCCceeeeee---chhh---------ccC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV----ATQSSVDLVTI---AAAL---------HWF 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~----~~~~sfDlV~~---~~~~---------hw~ 63 (213)
++|+|+|+|+.|++.+++. .++++..+++ .+++ ..+++||.|++ +.+. .|.
T Consensus 278 g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-------~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~ 350 (434)
T PRK14901 278 GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS-------RNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWR 350 (434)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-------hhcccccccccccCCEEEEeCCCCcccccccCcchhhh
Confidence 5899999999999999872 4677888777 4443 44678999995 2221 122
Q ss_pred -C----------hhHHHHHHHHHhcCCCeEEEEEe
Q 035840 64 -D----------LPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 64 -d----------~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
. ..+.+.++.++|| |||.|+..+
T Consensus 351 ~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvyst 384 (434)
T PRK14901 351 QTPEKIQELAPLQAELLESLAPLLK-PGGTLVYAT 384 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEe
Confidence 1 3577999999999 999987554
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.78 E-value=0.0001 Score=61.90 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=51.4
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeech-------------hhccC--
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAA-------------ALHWF-- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~-------------~~hw~-- 63 (213)
.+|+|+|+|+.|++.|++. .++++..+++ .+ ++++++||+|+++- .+++-
T Consensus 158 ~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~-------~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~ 229 (307)
T PRK11805 158 AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL-------FA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPE 229 (307)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch-------hh-hCCCCCccEEEECCCCCCccchhhcCHhhccCcc
Confidence 5899999999999999973 2477887775 32 23456899999851 11211
Q ss_pred -----------ChhHHHHHHHHHhcCCCeEEEE
Q 035840 64 -----------DLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 64 -----------d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.....++++.++|+ |||.+++
T Consensus 230 ~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~ 261 (307)
T PRK11805 230 LALAAGDDGLDLVRRILAEAPDYLT-EDGVLVV 261 (307)
T ss_pred ceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 02466899999999 9999976
No 119
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=0.00012 Score=60.17 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=56.7
Q ss_pred cCCeEEEEeCCHHHHHHhhc--CC---------------------------------CceEEecCCCCcchhhccCCCCC
Q 035840 4 IYKNVIATDTSPKQLEFAIK--LP---------------------------------NIRYQLTPPTMSITELEQNVATQ 48 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~--~~---------------------------------~v~~~~~~~~~~~~d~~~~~~~~ 48 (213)
.-=+|+|+|+|...|+.|++ ++ .|.|...+. +.+.+ ..
T Consensus 128 ~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL------l~~~~-~~ 200 (268)
T COG1352 128 FRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL------LDDSP-FL 200 (268)
T ss_pred CceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC------CCCcc-cc
Confidence 34589999999999999997 11 133444333 12222 45
Q ss_pred CceeeeeechhhccCCh---hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 49 SSVDLVTIAAALHWFDL---PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 49 ~sfDlV~~~~~~hw~d~---~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
+.||+|+|...+-+||. .+++..++..|+ |||.|.+ +..
T Consensus 201 ~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl-G~s 242 (268)
T COG1352 201 GKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL-GHS 242 (268)
T ss_pred CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE-ccC
Confidence 56999999999999954 589999999999 9999944 444
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=97.75 E-value=0.00013 Score=59.86 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=55.5
Q ss_pred CeEEEEeCCHHHHHHhhcC-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC--------------------
Q 035840 6 KNVIATDTSPKQLEFAIKL-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD-------------------- 64 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d-------------------- 64 (213)
.+|+|+|+|+.|++.|++. +++++..+++ .++. .+.+||+|+++-.+++..
T Consensus 89 ~~V~gVDisp~al~~Ar~n~~~v~~v~~D~-------~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l 160 (279)
T PHA03411 89 EKIVCVELNPEFARIGKRLLPEAEWITSDV-------FEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVM 160 (279)
T ss_pred CEEEEEECCHHHHHHHHHhCcCCEEEECch-------hhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccc
Confidence 5899999999999999974 6788888877 5553 356899999988887641
Q ss_pred -hhHHHHHHHHHhcCCCeEEEEE
Q 035840 65 -LPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 65 -~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
..+.++...++|+ |+|.+.+.
T Consensus 161 ~~~~~l~~v~~~L~-p~G~~~~~ 182 (279)
T PHA03411 161 TLGQKFADVGYFIV-PTGSAGFA 182 (279)
T ss_pred cHHHHHhhhHheec-CCceEEEE
Confidence 2345567778899 99976554
No 121
>PRK03612 spermidine synthase; Provisional
Probab=97.74 E-value=8.6e-05 Score=66.72 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=55.5
Q ss_pred CeEEEEeCCHHHHHHhhcC-------------CCceEEecCCCCcchhhcc-CCCCCCceeeeeechhhccC-C-----h
Q 035840 6 KNVIATDTSPKQLEFAIKL-------------PNIRYQLTPPTMSITELEQ-NVATQSSVDLVTIAAALHWF-D-----L 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------------~~v~~~~~~~~~~~~d~~~-~~~~~~sfDlV~~~~~~hw~-d-----~ 65 (213)
.+|+++|++++|++.|++. +++++..+|+ .+ +.-.+++||+|++.....+. + .
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da-------~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t 394 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA-------FNWLRKLAEKFDVIIVDLPDPSNPALGKLYS 394 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH-------HHHHHhCCCCCCEEEEeCCCCCCcchhccch
Confidence 6999999999999999982 4567777777 33 22235689999987554442 1 1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEe
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
..+++.+.+.|| |||.+++..
T Consensus 395 ~ef~~~~~~~L~-pgG~lv~~~ 415 (521)
T PRK03612 395 VEFYRLLKRRLA-PDGLLVVQS 415 (521)
T ss_pred HHHHHHHHHhcC-CCeEEEEec
Confidence 358899999999 999997654
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.73 E-value=0.00011 Score=60.51 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=54.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C----hhHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D----LPQFY 69 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d----~~~~~ 69 (213)
..+|+++|++++|++.|++. +++++..+++- +-+.-.+++||+|++.....+. . ...++
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~------~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~ 169 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF------KFLADTENTFDVIIVDSTDPVGPAETLFTKEFY 169 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH------HHHHhCCCCccEEEEeCCCCCCcccchhHHHHH
Confidence 46899999999999999973 34555565551 1111225689999986654333 1 35788
Q ss_pred HHHHHHhcCCCeEEEEE
Q 035840 70 KQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~ 86 (213)
+.+.+.|+ |||.+++.
T Consensus 170 ~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 170 ELLKKALN-EDGIFVAQ 185 (270)
T ss_pred HHHHHHhC-CCcEEEEc
Confidence 99999999 99999876
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.72 E-value=0.00014 Score=63.90 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=53.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCC--CCCCceeeeee---chh---------hccC-Ch
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTI---AAA---------LHWF-DL 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~---~~~---------~hw~-d~ 65 (213)
++|+|+|+|+.|++.+++. .++++..+++ .+.+ +.+++||.|++ +.+ ++|. ..
T Consensus 269 ~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~-------~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~ 341 (427)
T PRK10901 269 AQVVALDIDAQRLERVRENLQRLGLKATVIVGDA-------RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRP 341 (427)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc-------ccchhhcccCCCCEEEECCCCCcccccccCccccccCCH
Confidence 5899999999999999872 2356777776 4432 34678999993 222 2243 22
Q ss_pred ----------hHHHHHHHHHhcCCCeEEEEEeC
Q 035840 66 ----------PQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 66 ----------~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
.+.+.++.++|| |||.+++.+.
T Consensus 342 ~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystc 373 (427)
T PRK10901 342 EDIAALAALQSEILDALWPLLK-PGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 368999999999 9999976543
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.72 E-value=0.00013 Score=59.86 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=53.0
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeee---chhh-----------ccC--
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTI---AAAL-----------HWF-- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~---~~~~-----------hw~-- 63 (213)
++|+|+|+|+.|++.+++. .++.+..+++ ..++...++||.|++ +.+. .|.
T Consensus 97 g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-------~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~ 169 (264)
T TIGR00446 97 GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-------RVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEE 169 (264)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-------HHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHH
Confidence 5899999999999998862 4567777766 554444566999984 2222 121
Q ss_pred -------ChhHHHHHHHHHhcCCCeEEEEEeC
Q 035840 64 -------DLPQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 64 -------d~~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
...+.+.++.+.|| |||.|+..+.
T Consensus 170 ~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstc 200 (264)
T TIGR00446 170 DIQEISALQKELIDSAFDALK-PGGVLVYSTC 200 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 12358899999999 9999975543
No 125
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.70 E-value=4.4e-05 Score=65.29 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk 77 (213)
..++|+|.++..+.++... ....++.++. -..|+++++||.+-+..+.++. ++.++++|++|+++
T Consensus 134 ~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~-------~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~k 206 (364)
T KOG1269|consen 134 AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF-------GKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLK 206 (364)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh-------hcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccC
Confidence 5899999999999998873 2233444444 8889999999999999999999 99999999999999
Q ss_pred CCCeEEEEEeCC
Q 035840 78 KPNGVIAAWTYT 89 (213)
Q Consensus 78 ~pgG~l~~~~~~ 89 (213)
|||.++...+.
T Consensus 207 -pGG~~i~~e~i 217 (364)
T KOG1269|consen 207 -PGGLFIVKEWI 217 (364)
T ss_pred -CCceEEeHHHH
Confidence 99999866543
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.63 E-value=0.0002 Score=63.10 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=52.7
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC--CCCCceeeeeec---hhhc---------cC-
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIA---AALH---------WF- 63 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~---~~~h---------w~- 63 (213)
.++|+|+|+|+.|++.+++. .++++..+++ .+.+ ++ ++||+|++. .+.. |.
T Consensus 275 ~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~-------~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~ 346 (444)
T PRK14902 275 TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA-------RKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNK 346 (444)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc-------ccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcC
Confidence 36899999999999999862 4577888777 4432 23 679999952 2221 22
Q ss_pred Ch----------hHHHHHHHHHhcCCCeEEEEEe
Q 035840 64 DL----------PQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 64 d~----------~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.. ...+.++.++|| |||.|+..+
T Consensus 347 ~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvyst 379 (444)
T PRK14902 347 TKEDIESLQEIQLEILESVAQYLK-KGGILVYST 379 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEc
Confidence 11 357899999999 999997543
No 127
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.63 E-value=0.00024 Score=58.30 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=51.9
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechh------hccC----------
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAA------LHWF---------- 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~------~hw~---------- 63 (213)
.+|+|+|+|+.|++.|++. .++.+..++. .+ ++.+++||+|+++-- ++.+
T Consensus 133 ~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~-------~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~ 204 (275)
T PRK09328 133 AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW-------FE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPH 204 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc-------cC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCc
Confidence 6899999999999999973 3577777765 22 234678999997421 1101
Q ss_pred -----------ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 64 -----------DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 64 -----------d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.....+.++.++|| |||.+++-
T Consensus 205 ~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e 237 (275)
T PRK09328 205 LALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLLE 237 (275)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEEE
Confidence 13567788889999 99999763
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.59 E-value=0.00023 Score=62.48 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCeEEEEeCCHHHHHHhhcC---CCc--eE--EecCCCCcchhhccCCC--CCCceeeeee---chhhc---------cC
Q 035840 5 YKNVIATDTSPKQLEFAIKL---PNI--RY--QLTPPTMSITELEQNVA--TQSSVDLVTI---AAALH---------WF 63 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~---~~v--~~--~~~~~~~~~~d~~~~~~--~~~sfDlV~~---~~~~h---------w~ 63 (213)
.++|+|+|+|+.|++.+++. .++ .. ..+++ ...+. ++++||.|++ +.++. |.
T Consensus 262 ~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-------~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~ 334 (426)
T TIGR00563 262 QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG-------RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL 334 (426)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc-------ccccccccccccCEEEEcCCCCCCcccccCcchhhc
Confidence 36999999999999999862 222 23 33333 33222 5678999984 23322 22
Q ss_pred -C----------hhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 64 -D----------LPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 64 -d----------~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
+ ....+.++.++|| |||.|++.+..
T Consensus 335 ~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs 370 (426)
T TIGR00563 335 RKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCS 370 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 2 2578999999999 99999866443
No 129
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.59 E-value=0.0006 Score=49.28 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=59.1
Q ss_pred CeEEEEeCCHHHHHHhhcCC---C---ceEEecCCCCcchhhcc--CCCCC-CceeeeeechhhccCChhHHHHHHHHHh
Q 035840 6 KNVIATDTSPKQLEFAIKLP---N---IRYQLTPPTMSITELEQ--NVATQ-SSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~---~---v~~~~~~~~~~~~d~~~--~~~~~-~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
..++|+|+|+.|+..++... . +.+..++. .. .++.+ ..||++.+....+|.+....+.++.++|
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 145 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA-------LGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVL 145 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc-------ccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhc
Confidence 47999999999999966531 1 35566555 33 67777 5899995555556778899999999999
Q ss_pred cCCCeEEEEEeCCCC
Q 035840 77 KKPNGVIAAWTYTMP 91 (213)
Q Consensus 77 k~pgG~l~~~~~~~~ 91 (213)
+ |+|.+.+......
T Consensus 146 ~-~~g~~~~~~~~~~ 159 (257)
T COG0500 146 K-PGGRLVLSDLLRD 159 (257)
T ss_pred C-CCcEEEEEeccCC
Confidence 9 9999987766543
No 130
>PLN02366 spermidine synthase
Probab=97.55 E-value=0.00035 Score=58.62 Aligned_cols=75 Identities=15% Similarity=0.300 Sum_probs=54.9
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhh-ccCCCCCCceeeeeechhhccCC-----hhHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITEL-EQNVATQSSVDLVTIAAALHWFD-----LPQF 68 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~-~~~~~~~~sfDlV~~~~~~hw~d-----~~~~ 68 (213)
..+|+.||+++.+++.|+++ ++++++.+|+- .+ ++ .++++||+|++-..-++.- -..+
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~----~~l~~--~~~~~yDvIi~D~~dp~~~~~~L~t~ef 188 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV----EFLKN--APEGTYDAIIVDSSDPVGPAQELFEKPF 188 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH----HHHhh--ccCCCCCEEEEcCCCCCCchhhhhHHHH
Confidence 46899999999999999983 35777777761 11 21 2356799999754444331 2467
Q ss_pred HHHHHHHhcCCCeEEEEE
Q 035840 69 YKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 69 ~~e~~rvLk~pgG~l~~~ 86 (213)
++.+.++|+ |||.+++.
T Consensus 189 ~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 189 FESVARALR-PGGVVCTQ 205 (308)
T ss_pred HHHHHHhcC-CCcEEEEC
Confidence 999999999 99999764
No 131
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00012 Score=58.52 Aligned_cols=76 Identities=17% Similarity=0.414 Sum_probs=53.3
Q ss_pred eEEEEeCCHHHHHHhhcC-----------C------------------------------CceEEecCCCCcchhhccCC
Q 035840 7 NVIATDTSPKQLEFAIKL-----------P------------------------------NIRYQLTPPTMSITELEQNV 45 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~-----------~------------------------------~v~~~~~~~~~~~~d~~~~~ 45 (213)
.|+|+|+.+..|+.||+. + ++.|+..+-.+.-+||- .
T Consensus 84 ~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~ 161 (288)
T KOG2899|consen 84 RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--D 161 (288)
T ss_pred eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecchhh--h
Confidence 799999999999999972 1 22222222221112233 2
Q ss_pred CCCCceeeeeechhhccC--Ch-----hHHHHHHHHHhcCCCeEEEE
Q 035840 46 ATQSSVDLVTIAAALHWF--DL-----PQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 46 ~~~~sfDlV~~~~~~hw~--d~-----~~~~~e~~rvLk~pgG~l~~ 85 (213)
+....||+|.|...-.|+ ++ -.+|..+.+.|. |||.|++
T Consensus 162 ~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiLvv 207 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-PGGILVV 207 (288)
T ss_pred hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-cCcEEEE
Confidence 456779999988888888 33 478999999999 9999965
No 132
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00015 Score=58.63 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCC--CCCCceeeeeech----------------hh
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAA----------------AL 60 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~----------------~~ 60 (213)
.+|+|||+.+.|.+.|++. ..+++.++|. .++. ..-.+||+|+|+= ..
T Consensus 69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di-------~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~A 141 (248)
T COG4123 69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI-------KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIA 141 (248)
T ss_pred CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH-------HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhh
Confidence 7999999999999999972 3555666555 5553 4445799999741 12
Q ss_pred ccC---ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 61 HWF---DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 61 hw~---d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
||. +.+..++-+.++|| |||.+++.
T Consensus 142 r~e~~~~le~~i~~a~~~lk-~~G~l~~V 169 (248)
T COG4123 142 RHEITLDLEDLIRAAAKLLK-PGGRLAFV 169 (248)
T ss_pred hhhhcCCHHHHHHHHHHHcc-CCCEEEEE
Confidence 444 78899999999999 99999865
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.47 E-value=0.00021 Score=54.64 Aligned_cols=75 Identities=8% Similarity=-0.118 Sum_probs=52.8
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHH--
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWV-- 75 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rv-- 75 (213)
+++..+|+|+|+|+.|++.+++. +++++..+++ .++++++.+||.|+++--+|.. ...+..+.+-
T Consensus 32 ~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~-------~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~ 102 (169)
T smart00650 32 LERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA-------LKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPP 102 (169)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch-------hcCCccccCCCEEEECCCcccH--HHHHHHHHhcCC
Confidence 44578999999999999999874 4677777777 7777777789999998777653 2333333322
Q ss_pred hcCCCeEEEEE
Q 035840 76 LKKPNGVIAAW 86 (213)
Q Consensus 76 Lk~pgG~l~~~ 86 (213)
+. ++|.|.+.
T Consensus 103 ~~-~~~~l~~q 112 (169)
T smart00650 103 AF-RDAVLMVQ 112 (169)
T ss_pred Cc-ceEEEEEE
Confidence 34 46666443
No 134
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00047 Score=58.18 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEec-CCCCcchhhccCCCCCCceeeeee------chhhccCC----hhH
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLT-PPTMSITELEQNVATQSSVDLVTI------AAALHWFD----LPQ 67 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~------~~~~hw~d----~~~ 67 (213)
+.+|+|+|++..|+.-|+.. .+..+..+ |+ ..+|+++++||.|.+ +....-.. ...
T Consensus 219 G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-------~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~ 291 (347)
T COG1041 219 GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA-------TNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEE 291 (347)
T ss_pred CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc-------ccCCCCCCccceEEecCCCCcccccccccHHHHHHH
Confidence 56999999999999999972 23323333 77 889999999999982 22222223 468
Q ss_pred HHHHHHHHhcCCCeEEEEEeCC
Q 035840 68 FYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
++..+.++|| +||.++++...
T Consensus 292 ~le~~~evLk-~gG~~vf~~p~ 312 (347)
T COG1041 292 ALESASEVLK-PGGRIVFAAPR 312 (347)
T ss_pred HHHHHHHHhh-cCcEEEEecCC
Confidence 8999999999 99999988763
No 135
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.46 E-value=0.00032 Score=56.62 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cC--ChhHHHHHHHHHhcCCC--e
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WF--DLPQFYKQVKWVLKKPN--G 81 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~--d~~~~~~e~~rvLk~pg--G 81 (213)
+++..|+ |..++.|++.+++++..++. - -++|. +|+++....+| |- +..+.++++++.|+ || |
T Consensus 126 ~~~v~Dl-p~v~~~~~~~~rv~~~~gd~-------f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g 193 (241)
T PF00891_consen 126 RATVFDL-PEVIEQAKEADRVEFVPGDF-------F-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALK-PGKDG 193 (241)
T ss_dssp EEEEEE--HHHHCCHHHTTTEEEEES-T-------T-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSE-ECTTE
T ss_pred cceeecc-HhhhhccccccccccccccH-------H-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhC-CCCCC
Confidence 7899999 99999999877899988876 3 24545 99999999998 55 56688999999999 99 9
Q ss_pred EEEEEeCCC
Q 035840 82 VIAAWTYTM 90 (213)
Q Consensus 82 ~l~~~~~~~ 90 (213)
+|+|.....
T Consensus 194 ~llI~e~~~ 202 (241)
T PF00891_consen 194 RLLIIEMVL 202 (241)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEeecc
Confidence 999887653
No 136
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.41 E-value=0.0006 Score=55.59 Aligned_cols=73 Identities=21% Similarity=0.145 Sum_probs=49.6
Q ss_pred CeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhcc-CC-CCCCceeeeeech------hh---------c----
Q 035840 6 KNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQ-NV-ATQSSVDLVTIAA------AL---------H---- 61 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~-~~-~~~~sfDlV~~~~------~~---------h---- 61 (213)
.+|+|+|+|+.|++.|++. .++++..++. .+ ++ ...++||+|+++- .+ |
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~-------~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~ 183 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLADAGGTVHEGDL-------YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRV 183 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCEEEEeec-------hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHH
Confidence 4899999999999999973 3456777765 32 21 1135799999752 11 1
Q ss_pred -cC---C----hhHHHHHHHHHhcCCCeEEEEE
Q 035840 62 -WF---D----LPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 62 -w~---d----~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+. | ....+..+.++|| |||.+++.
T Consensus 184 al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~ 215 (251)
T TIGR03704 184 ALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVE 215 (251)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 11 1 2366777889999 99999754
No 137
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.40 E-value=5.5e-05 Score=66.27 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=38.5
Q ss_pred ccCCCCCCceeeeeechhh-ccC-ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 42 EQNVATQSSVDLVTIAAAL-HWF-DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 42 ~~~~~~~~sfDlV~~~~~~-hw~-d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
..+|+++++||+|+|+.|+ .|. +-...+-|+.|+|| |||.+...
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S 218 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLS 218 (506)
T ss_pred ccccCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEec
Confidence 7889999999999999999 588 55678899999999 99998544
No 138
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.37 E-value=0.00057 Score=55.14 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccCChhHHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWFDLPQFYKQVKWV 75 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~d~~~~~~e~~rv 75 (213)
.++|+++|+++++++.|++. .++++..+++... +..+. .++++||+|+.-..= -.....+.++.+.
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~---L~~l~~~~~~~~fD~VfiDa~k--~~y~~~~~~~~~l 167 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA---LDQLLNNDPKPEFDFAFVDADK--PNYVHFHEQLLKL 167 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH---HHHHHhCCCCCCCCEEEECCCH--HHHHHHHHHHHHh
Confidence 46999999999999999972 3578888887211 11110 124689999864211 1335778999999
Q ss_pred hcCCCeEEEEE
Q 035840 76 LKKPNGVIAAW 86 (213)
Q Consensus 76 Lk~pgG~l~~~ 86 (213)
|| |||.+++-
T Consensus 168 l~-~GG~ii~d 177 (234)
T PLN02781 168 VK-VGGIIAFD 177 (234)
T ss_pred cC-CCeEEEEE
Confidence 99 99998653
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.31 E-value=0.00073 Score=59.59 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=54.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKW 74 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~r 74 (213)
||..+++|+|+|+|+.|++.|++. .++++..++++. .+...++.+++||+|++.=-- ......+..+.+
T Consensus 315 la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~---~l~~~~~~~~~fD~Vi~dPPr--~g~~~~~~~l~~ 389 (443)
T PRK13168 315 LARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE---DFTDQPWALGGFDKVLLDPPR--AGAAEVMQALAK 389 (443)
T ss_pred HHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH---hhhhhhhhcCCCCEEEECcCC--cChHHHHHHHHh
Confidence 356678999999999999999972 468888888731 112234556789999853211 112344555554
Q ss_pred HhcCCCeEEEEEeC
Q 035840 75 VLKKPNGVIAAWTY 88 (213)
Q Consensus 75 vLk~pgG~l~~~~~ 88 (213)
++ |++.+++.+.
T Consensus 390 -~~-~~~ivyvSCn 401 (443)
T PRK13168 390 -LG-PKRIVYVSCN 401 (443)
T ss_pred -cC-CCeEEEEEeC
Confidence 68 8988877764
No 140
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00019 Score=57.14 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=56.3
Q ss_pred ccCC-eEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccC--CCCCCceeeeee---chhhc-cCChhH
Q 035840 3 KIYK-NVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQN--VATQSSVDLVTI---AAALH-WFDLPQ 67 (213)
Q Consensus 3 ~~~~-~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~---~~~~h-w~d~~~ 67 (213)
.+++ +|+-++-+|+-|+.|.-. .+++...||+ .+. .|+|.|||.|+. .+|+- -.=-..
T Consensus 154 ~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~-------~e~V~~~~D~sfDaIiHDPPRfS~AgeLYsee 226 (287)
T COG2521 154 ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA-------YEVVKDFDDESFDAIIHDPPRFSLAGELYSEE 226 (287)
T ss_pred HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH-------HHHHhcCCccccceEeeCCCccchhhhHhHHH
Confidence 3456 999999999999999863 3466777776 333 388999999982 22221 223468
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 035840 68 FYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~ 87 (213)
++.|++|+|| |||++....
T Consensus 227 fY~El~RiLk-rgGrlFHYv 245 (287)
T COG2521 227 FYRELYRILK-RGGRLFHYV 245 (287)
T ss_pred HHHHHHHHcC-cCCcEEEEe
Confidence 8999999999 999996543
No 141
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.29 E-value=0.00049 Score=64.04 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=53.9
Q ss_pred CeEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccC-CCCCCceeeeeec-----------hhhccC-C
Q 035840 6 KNVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIA-----------AALHWF-D 64 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~-----------~~~hw~-d 64 (213)
++|++||+|+.+++.|++. .++++..+++ .++ .-..++||+|++. ..+.-. +
T Consensus 562 ~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~-------~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~ 634 (702)
T PRK11783 562 KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC-------LAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRD 634 (702)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH-------HHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHH
Confidence 4799999999999999972 2567888776 221 1114679999962 222233 5
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEeC
Q 035840 65 LPQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 65 ~~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
....+..+.++|+ |||.|++.+.
T Consensus 635 y~~l~~~a~~lL~-~gG~l~~~~~ 657 (702)
T PRK11783 635 HVALIKDAKRLLR-PGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHcC-CCCEEEEEeC
Confidence 6778889999999 9999876543
No 142
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.27 E-value=0.0006 Score=59.22 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhh-ccCCCCCCceeeeeechh---------hccC-Ch
Q 035840 5 YKNVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITEL-EQNVATQSSVDLVTIAAA---------LHWF-DL 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~-~~~~~~~~sfDlV~~~~~---------~hw~-d~ 65 (213)
.++|+++|+|+.+++.|++. .++++..+|+- ++ ..+....++||+|++.== .... +.
T Consensus 243 a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~----~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y 318 (396)
T PRK15128 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF----KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY 318 (396)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH----HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHH
Confidence 45999999999999999972 25678888771 11 111123567999995511 0111 33
Q ss_pred hHHHHHHHHHhcCCCeEEEEEe
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
...+..+.++|+ |||.|++.+
T Consensus 319 ~~l~~~a~~lLk-~gG~lv~~s 339 (396)
T PRK15128 319 KDINMLAIQLLN-PGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHcC-CCeEEEEEe
Confidence 445556789999 999987544
No 143
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.24 E-value=0.0012 Score=57.35 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCC-CCCceeeeeechhhc-----------------
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVA-TQSSVDLVTIAAALH----------------- 61 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~-~~~sfDlV~~~~~~h----------------- 61 (213)
..+|+|+|+|+.|++.|++. .++++..++. .+..+ .+++||+|+++=-..
T Consensus 275 ~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl-------~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~ 347 (423)
T PRK14966 275 DAFVRASDISPPALETARKNAADLGARVEFAHGSW-------FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQ 347 (423)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch-------hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHH
Confidence 46899999999999999973 2467777765 33222 245799999843110
Q ss_pred --cC---C----hhHHHHHHHHHhcCCCeEEEE
Q 035840 62 --WF---D----LPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 62 --w~---d----~~~~~~e~~rvLk~pgG~l~~ 85 (213)
+. | ....++++.+.|+ |||.+++
T Consensus 348 ~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lil 379 (423)
T PRK14966 348 IALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLL 379 (423)
T ss_pred HHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEE
Confidence 11 1 2255666778999 9999864
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0024 Score=51.41 Aligned_cols=70 Identities=4% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc------cC-------ChhHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH------WF-------DLPQFYK 70 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h------w~-------d~~~~~~ 70 (213)
..+|+|+|+++.|++.|++. +++.+..+++ ...++ +++||+|+++==++ +- -...++.
T Consensus 76 ~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~-------~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~ 147 (241)
T PHA03412 76 PREIVCVELNHTYYKLGKRIVPEATWINADA-------LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIE 147 (241)
T ss_pred CcEEEEEECCHHHHHHHHhhccCCEEEEcch-------hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHH
Confidence 45899999999999999974 5677888766 55444 56899999653222 11 1445788
Q ss_pred HHHHHhcCCCeEE
Q 035840 71 QVKWVLKKPNGVI 83 (213)
Q Consensus 71 e~~rvLk~pgG~l 83 (213)
.+.|+++ ||+.+
T Consensus 148 ~A~~Ll~-~G~~I 159 (241)
T PHA03412 148 RASQIAR-QGTFI 159 (241)
T ss_pred HHHHHcC-CCEEE
Confidence 8889777 67653
No 145
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.12 E-value=0.00043 Score=54.91 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=49.7
Q ss_pred CCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 5 YKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
.++|+++|+.+.+.+.|++ ..|+.+..+++. ..+ .....||.|++..+.. ..-..+.+-||
T Consensus 97 ~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~------~g~-~~~apfD~I~v~~a~~-----~ip~~l~~qL~- 163 (209)
T PF01135_consen 97 VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS------EGW-PEEAPFDRIIVTAAVP-----EIPEALLEQLK- 163 (209)
T ss_dssp TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG------GTT-GGG-SEEEEEESSBBS-----S--HHHHHTEE-
T ss_pred cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh------hcc-ccCCCcCEEEEeeccc-----hHHHHHHHhcC-
Confidence 3479999999999999998 258899999872 322 2445699999887773 33355777799
Q ss_pred CCeEEEE
Q 035840 79 PNGVIAA 85 (213)
Q Consensus 79 pgG~l~~ 85 (213)
+||++.+
T Consensus 164 ~gGrLV~ 170 (209)
T PF01135_consen 164 PGGRLVA 170 (209)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999975
No 146
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.11 E-value=0.0014 Score=50.45 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=54.6
Q ss_pred eEEEEeCCHHHHHHhhcC------CC-ceEEecCCCCcchhhccCCCCCCceeeee-----echhhccC---Ch-hHHHH
Q 035840 7 NVIATDTSPKQLEFAIKL------PN-IRYQLTPPTMSITELEQNVATQSSVDLVT-----IAAALHWF---DL-PQFYK 70 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~------~~-v~~~~~~~~~~~~d~~~~~~~~~sfDlV~-----~~~~~hw~---d~-~~~~~ 70 (213)
..+|||.|+..++.|+.. ++ |+|.+.+. -+-.+..+.||+|. =+.+++-. .+ ..-+.
T Consensus 93 ~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI-------~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d 165 (227)
T KOG1271|consen 93 KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI-------TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD 165 (227)
T ss_pred CccccccCHHHHHHHHHHHHhcCCCcceeEEEeec-------cCCcccccceeEEeecCceeeeecCCCCcccceeeehh
Confidence 489999999999998862 44 88998776 44356778899998 34455544 22 23357
Q ss_pred HHHHHhcCCCeEEEEEeCC
Q 035840 71 QVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~ 89 (213)
-+.++|+ |||.|.|.+.+
T Consensus 166 ~v~~ll~-~~gifvItSCN 183 (227)
T KOG1271|consen 166 SVEKLLS-PGGIFVITSCN 183 (227)
T ss_pred hHhhccC-CCcEEEEEecC
Confidence 7888999 99999876554
No 147
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.06 E-value=0.0021 Score=57.71 Aligned_cols=72 Identities=26% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhh-----------c-----
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL-----------H----- 61 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~-----------h----- 61 (213)
..+|+|+|+|+.|++.|++. .++++..++. .+ ++++++||+|+++=-. .
T Consensus 162 ~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~-------~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~E 233 (506)
T PRK01544 162 NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW-------FE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYE 233 (506)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch-------hh-hCcCCCccEEEECCCCCCchhhhhcCchhhccC
Confidence 35899999999999999972 2456666654 22 2345689999983211 0
Q ss_pred ----cC-------ChhHHHHHHHHHhcCCCeEEEE
Q 035840 62 ----WF-------DLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 62 ----w~-------d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
++ .....+.++.++|+ |||.+++
T Consensus 234 P~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~l 267 (506)
T PRK01544 234 PSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIIL 267 (506)
T ss_pred cHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence 11 02345678889999 9999875
No 148
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.06 E-value=0.0017 Score=51.69 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEe-cCCCCcchhhccCC-CCCCceeeeeechhhccC-ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQL-TPPTMSITELEQNV-ATQSSVDLVTIAAALHWF-DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~-~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~-d~~~~~~e~~r 74 (213)
-++++.+|+++++.+.|++. +.++... +++ ++.+. ...++||+|+.= ++- +.+..+..+.+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda------l~~l~~~~~~~fDliFID---adK~~yp~~le~~~~ 154 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA------LDVLSRLLDGSFDLVFID---ADKADYPEYLERALP 154 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH------HHHHHhccCCCccEEEEe---CChhhCHHHHHHHHH
Confidence 56999999999999999982 3356666 355 12222 567899999843 233 66899999999
Q ss_pred HhcCCCeEEEEEe
Q 035840 75 VLKKPNGVIAAWT 87 (213)
Q Consensus 75 vLk~pgG~l~~~~ 87 (213)
.|+ |||.+++=+
T Consensus 155 lLr-~GGliv~DN 166 (219)
T COG4122 155 LLR-PGGLIVADN 166 (219)
T ss_pred HhC-CCcEEEEee
Confidence 999 999986544
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.03 E-value=0.0024 Score=50.05 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=57.4
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCCh---------hHHHH
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDL---------PQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~---------~~~~~ 70 (213)
..++|+|++..-+..|.+ .+|+.+..++|... +..+ ++++++|-|+..+-=-|... +..+.
T Consensus 42 ~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~---l~~~-~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~ 117 (195)
T PF02390_consen 42 INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL---LRRL-FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLE 117 (195)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH---HHHH-STTTSEEEEEEES-----SGGGGGGSTTSHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH---Hhhc-ccCCchheEEEeCCCCCcccchhhhhcCCchHHH
Confidence 579999999999998876 48999999998421 1222 66899999999888777732 47899
Q ss_pred HHHHHhcCCCeEEEEEeCCC
Q 035840 71 QVKWVLKKPNGVIAAWTYTM 90 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~~ 90 (213)
+++++|+ |||.|.+.+...
T Consensus 118 ~~~~~L~-~gG~l~~~TD~~ 136 (195)
T PF02390_consen 118 LLARVLK-PGGELYFATDVE 136 (195)
T ss_dssp HHHHHEE-EEEEEEEEES-H
T ss_pred HHHHHcC-CCCEEEEEeCCH
Confidence 9999999 999998876653
No 150
>PLN02823 spermine synthase
Probab=97.03 E-value=0.0023 Score=54.39 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-------ChhH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-------DLPQ 67 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-------d~~~ 67 (213)
..+|++||+++.+++.||++ ++++++.+|+- .-+.-.+++||+|++-..=.+- =-..
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~------~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~e 200 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR------AELEKRDEKFDVIIGDLADPVEGGPCYQLYTKS 200 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH------HHHhhCCCCccEEEecCCCccccCcchhhccHH
Confidence 46899999999999999972 45677777771 2223345789999965321111 1235
Q ss_pred HHH-HHHHHhcCCCeEEEEE
Q 035840 68 FYK-QVKWVLKKPNGVIAAW 86 (213)
Q Consensus 68 ~~~-e~~rvLk~pgG~l~~~ 86 (213)
+++ .+.+.|+ |||.+++.
T Consensus 201 F~~~~~~~~L~-p~Gvlv~q 219 (336)
T PLN02823 201 FYERIVKPKLN-PGGIFVTQ 219 (336)
T ss_pred HHHHHHHHhcC-CCcEEEEe
Confidence 777 8999999 99998765
No 151
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.00 E-value=0.0021 Score=54.19 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCC-CCCceeeeeechhhccCChhHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVA-TQSSVDLVTIAAALHWFDLPQFYKQVK 73 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~-~~~sfDlV~~~~~~hw~d~~~~~~e~~ 73 (213)
||.++++|+|+|+|+.|++.|++. .+++|..+++ +++.. .+++||+|++.-- .-...+.+.++.
T Consensus 191 la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~-------~~~~~~~~~~~D~Vv~dPP--r~G~~~~~~~~l 261 (315)
T PRK03522 191 CATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS-------TQFATAQGEVPDLVLVNPP--RRGIGKELCDYL 261 (315)
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH-------HHHHHhcCCCCeEEEECCC--CCCccHHHHHHH
Confidence 356678999999999999999862 4688888887 44322 3457999986521 011112222333
Q ss_pred HHhcCCCeEEEEEeCC
Q 035840 74 WVLKKPNGVIAAWTYT 89 (213)
Q Consensus 74 rvLk~pgG~l~~~~~~ 89 (213)
.-++ |++.+++.|..
T Consensus 262 ~~~~-~~~ivyvsc~p 276 (315)
T PRK03522 262 SQMA-PRFILYSSCNA 276 (315)
T ss_pred HHcC-CCeEEEEECCc
Confidence 3356 67666555443
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.97 E-value=0.0014 Score=57.60 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC-hhHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD-LPQFYKQVK 73 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d-~~~~~~e~~ 73 (213)
||+.+++|+|+|+|+.|++.|++ ..+++|..++++. .+..+++.+++||+|++.=.= .. ...++..+.
T Consensus 310 la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~---~l~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~ 384 (431)
T TIGR00479 310 LAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET---VLPKQPWAGQIPDVLLLDPPR--KGCAAEVLRTII 384 (431)
T ss_pred HHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH---HHHHHHhcCCCCCEEEECcCC--CCCCHHHHHHHH
Confidence 35667899999999999999997 2578888888731 012233446679999842110 11 134445544
Q ss_pred HHhcCCCeEEEEEeC
Q 035840 74 WVLKKPNGVIAAWTY 88 (213)
Q Consensus 74 rvLk~pgG~l~~~~~ 88 (213)
-++ |++.+++.+.
T Consensus 385 -~l~-~~~ivyvsc~ 397 (431)
T TIGR00479 385 -ELK-PERIVYVSCN 397 (431)
T ss_pred -hcC-CCEEEEEcCC
Confidence 388 8887766543
No 153
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.00033 Score=52.36 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=38.0
Q ss_pred ccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 42 EQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 42 ~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.+.+|.++|.|+|.+-..+.++ .-..++++++|+|| |||.|-+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriA 85 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIA 85 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 5668999999999999999555 55688999999999 99999775
No 154
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.91 E-value=0.006 Score=47.16 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=60.1
Q ss_pred ccCCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 3 KIYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
....+|+|+|=++++++..++ .+|++.+.++|. +.++-.+ ++|.|+.+-+ -..+..+..+...|
T Consensus 56 ~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap------~~L~~~~-~~daiFIGGg---~~i~~ile~~~~~l 125 (187)
T COG2242 56 GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP------EALPDLP-SPDAIFIGGG---GNIEEILEAAWERL 125 (187)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch------HhhcCCC-CCCEEEECCC---CCHHHHHHHHHHHc
Confidence 446799999999999999776 378999999884 3333222 7999999888 48899999999999
Q ss_pred cCCCeEEEEEeC
Q 035840 77 KKPNGVIAAWTY 88 (213)
Q Consensus 77 k~pgG~l~~~~~ 88 (213)
| |||++.+-..
T Consensus 126 ~-~ggrlV~nai 136 (187)
T COG2242 126 K-PGGRLVANAI 136 (187)
T ss_pred C-cCCeEEEEee
Confidence 9 9999965433
No 155
>PRK00536 speE spermidine synthase; Provisional
Probab=96.91 E-value=0.004 Score=51.00 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=50.8
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHH
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQV 72 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~ 72 (213)
+|-.+|+-||+.+.+++.||++ |+++.... +.+ ...++||+|++=.+ +.+..++.+
T Consensus 92 kh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--------~~~--~~~~~fDVIIvDs~----~~~~fy~~~ 157 (262)
T PRK00536 92 KYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--------LLD--LDIKKYDLIICLQE----PDIHKIDGL 157 (262)
T ss_pred CcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--------hhh--ccCCcCCEEEEcCC----CChHHHHHH
Confidence 3445999999999999999992 34443331 121 12467999997644 557889999
Q ss_pred HHHhcCCCeEEEEE
Q 035840 73 KWVLKKPNGVIAAW 86 (213)
Q Consensus 73 ~rvLk~pgG~l~~~ 86 (213)
.|+|+ |||.++..
T Consensus 158 ~~~L~-~~Gi~v~Q 170 (262)
T PRK00536 158 KRMLK-EDGVFISV 170 (262)
T ss_pred HHhcC-CCcEEEEC
Confidence 99999 99999765
No 156
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.90 E-value=0.0034 Score=52.90 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=62.3
Q ss_pred cCCeEEEEeCCHHHHHHhhc-C-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cC--ChhHHHHHHHHHhcC
Q 035840 4 IYKNVIATDTSPKQLEFAIK-L-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WF--DLPQFYKQVKWVLKK 78 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~-~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~--d~~~~~~e~~rvLk~ 78 (213)
+|.+|-|+++....+-.++. + ++|+.+-++. |.+.|- -|+|++.+++| |- |..+.|+++...|+
T Consensus 198 ~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm------fq~~P~----~daI~mkWiLhdwtDedcvkiLknC~~sL~- 266 (342)
T KOG3178|consen 198 KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM------FQDTPK----GDAIWMKWILHDWTDEDCVKILKNCKKSLP- 266 (342)
T ss_pred hCCCCceeecCHHHHHhhhhhhcCCcceecccc------cccCCC----cCeEEEEeecccCChHHHHHHHHHHHHhCC-
Confidence 68889999999988887665 5 7777777665 455543 35999999996 88 77899999999999
Q ss_pred CCeEEEEEeCCCC
Q 035840 79 PNGVIAAWTYTMP 91 (213)
Q Consensus 79 pgG~l~~~~~~~~ 91 (213)
|||.+++.....|
T Consensus 267 ~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 267 PGGKIIVVENVTP 279 (342)
T ss_pred CCCEEEEEeccCC
Confidence 9999998877544
No 157
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.87 E-value=0.0012 Score=57.04 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=55.7
Q ss_pred eEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccCC---CCCCceeeeee---------chhhccC-Ch
Q 035840 7 NVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQNV---ATQSSVDLVTI---------AAALHWF-DL 65 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~~---~~~~sfDlV~~---------~~~~hw~-d~ 65 (213)
+|++||.|..-|+.|++. ..+.|+++|+ |+-+. -...+||+|+. .+.+.-. |.
T Consensus 242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv------f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy 315 (393)
T COG1092 242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV------FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDY 315 (393)
T ss_pred ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH------HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHH
Confidence 999999999999999982 3457888877 33322 23458999992 1222323 78
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 66 PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 66 ~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
...+..+.++|+ |||.+++.+..
T Consensus 316 ~~l~~~~~~iL~-pgG~l~~~s~~ 338 (393)
T COG1092 316 KDLNDLALRLLA-PGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHHHcC-CCCEEEEEecC
Confidence 888999999999 99999866544
No 158
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0046 Score=51.23 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=57.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccC-CCCCCceeeeeechhhccCCh------hH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWFDL------PQ 67 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~d~------~~ 67 (213)
..+++.||+.+..++.||++ |.++...+|+ -++ .-...+||+|++-..-. ..+ ..
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-------~~~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~e 171 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-------VEFLRDCEEKFDVIIVDSTDP-VGPAEALFTEE 171 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-------HHHHHhCCCcCCEEEEcCCCC-CCcccccCCHH
Confidence 36999999999999999983 3455566665 322 22233799999766554 344 78
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCc
Q 035840 68 FYKQVKWVLKKPNGVIAAWTYTMPEI 93 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~~~~~~~~ 93 (213)
+++.++|+|+ ++|.+... .+.+.+
T Consensus 172 Fy~~~~~~L~-~~Gi~v~q-~~~~~~ 195 (282)
T COG0421 172 FYEGCRRALK-EDGIFVAQ-AGSPFL 195 (282)
T ss_pred HHHHHHHhcC-CCcEEEEe-cCCccc
Confidence 9999999999 99999776 333443
No 159
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0035 Score=52.17 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=50.9
Q ss_pred CeEEEEeCCHHHHHHhhc---CCCce----EEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 6 KNVIATDTSPKQLEFAIK---LPNIR----YQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~---~~~v~----~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
++|+|+|+.|-.++.|+. +.++. ....+. .+. ...+.||+|+++-..+-+ ....+++.+.||
T Consensus 186 ~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~-------~~~-~~~~~~DvIVANILA~vl--~~La~~~~~~lk- 254 (300)
T COG2264 186 KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL-------LEV-PENGPFDVIVANILAEVL--VELAPDIKRLLK- 254 (300)
T ss_pred ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc-------hhh-cccCcccEEEehhhHHHH--HHHHHHHHHHcC-
Confidence 479999999999999997 23333 111111 111 233589999998755322 367799999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
|||.+++++.-
T Consensus 255 pgg~lIlSGIl 265 (300)
T COG2264 255 PGGRLILSGIL 265 (300)
T ss_pred CCceEEEEeeh
Confidence 99999888743
No 160
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.58 E-value=0.0039 Score=50.70 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=52.7
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc-----CChhHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW-----FDLPQFY 69 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw-----~d~~~~~ 69 (213)
..+|++||+++.+++.|+++ ++++.+.+|+ ..+-.- ...++||+|+.-..-.. +=-..++
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg----~~~l~~-~~~~~yDvIi~D~~dp~~~~~~l~t~ef~ 174 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG----RKFLKE-TQEEKYDVIIVDLTDPDGPAPNLFTREFY 174 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH----HHHHHT-SSST-EEEEEEESSSTTSCGGGGSSHHHH
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh----HHHHHh-ccCCcccEEEEeCCCCCCCcccccCHHHH
Confidence 36999999999999999982 4678888877 121111 12228999995332211 1235889
Q ss_pred HHHHHHhcCCCeEEEEEe
Q 035840 70 KQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~~ 87 (213)
+.+.+.|+ |||.++++.
T Consensus 175 ~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 175 QLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp HHHHHHEE-EEEEEEEEE
T ss_pred HHHHhhcC-CCcEEEEEc
Confidence 99999999 999998776
No 161
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.56 E-value=0.002 Score=53.48 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=50.2
Q ss_pred CeEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccCCCCCCceeeeee------chhhccC-ChhHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQNVATQSSVDLVTI------AAALHWF-DLPQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~------~~~~hw~-d~~~~~~ 70 (213)
.+|++||.|...++.|++. ..++|..+|+-. -+..+ -..+.||+|++ -..+.-. |..+.+.
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~---~l~~~-~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~ 222 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK---FLKRL-KKGGRFDLIILDPPSFAKSKFDLERDYKKLLR 222 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH---HHHHH-HHTT-EEEEEE--SSEESSTCEHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH---HHHHH-hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999981 357788877610 01111 12457999992 2222212 6778888
Q ss_pred HHHHHhcCCCeEEEEEeC
Q 035840 71 QVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~ 88 (213)
.+.++|+ |||.|++.+.
T Consensus 223 ~a~~ll~-~gG~l~~~sc 239 (286)
T PF10672_consen 223 RAMKLLK-PGGLLLTCSC 239 (286)
T ss_dssp HHHHTEE-EEEEEEEEE-
T ss_pred HHHHhcC-CCCEEEEEcC
Confidence 8999999 9999865443
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0049 Score=48.58 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=53.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKW 74 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~r 74 (213)
||+..++|+.+|..+...+.|++ +.||.+.++|+. ..+ .+...||.|++.-+.- ..=+.+.+
T Consensus 90 la~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~------~G~-~~~aPyD~I~Vtaaa~-----~vP~~Ll~ 157 (209)
T COG2518 90 LARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS------KGW-PEEAPYDRIIVTAAAP-----EVPEALLD 157 (209)
T ss_pred HHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc------cCC-CCCCCcCEEEEeeccC-----CCCHHHHH
Confidence 35567799999999999999998 367899999882 333 3446799999776653 22344567
Q ss_pred HhcCCCeEEEE
Q 035840 75 VLKKPNGVIAA 85 (213)
Q Consensus 75 vLk~pgG~l~~ 85 (213)
-|| |||++.+
T Consensus 158 QL~-~gGrlv~ 167 (209)
T COG2518 158 QLK-PGGRLVI 167 (209)
T ss_pred hcc-cCCEEEE
Confidence 799 9999864
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.51 E-value=0.0069 Score=49.26 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=52.6
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCC---CCCceeeeeechhhccC-ChhHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVA---TQSSVDLVTIAAALHWF-DLPQFYKQVK 73 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~---~~~sfDlV~~~~~~hw~-d~~~~~~e~~ 73 (213)
.++|+.+|+++++.+.|++. .+|++..|++... +..+.- ..++||+|+.=.. - .....+..+.
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~---L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l 177 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV---LDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLI 177 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH---HHHHHhccccCCcccEEEecCC---HHHhHHHHHHHH
Confidence 56999999999999999972 5788888887211 111110 1368999995422 2 4567778888
Q ss_pred HHhcCCCeEEEE
Q 035840 74 WVLKKPNGVIAA 85 (213)
Q Consensus 74 rvLk~pgG~l~~ 85 (213)
+.|+ |||.+++
T Consensus 178 ~ll~-~GGviv~ 188 (247)
T PLN02589 178 DLVK-VGGVIGY 188 (247)
T ss_pred HhcC-CCeEEEE
Confidence 9999 9999864
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.49 E-value=0.0045 Score=48.95 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=54.0
Q ss_pred cCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 4 IYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
..++|+.+|+++++.+.|++. ..+++..+++-.....+.. .-+.++||+|+.-..=. +....+..+.+.|
T Consensus 69 ~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~-~~~~~~fD~VFiDa~K~--~y~~y~~~~~~ll 145 (205)
T PF01596_consen 69 EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN-DGEEGQFDFVFIDADKR--NYLEYFEKALPLL 145 (205)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH-TTTTTSEEEEEEESTGG--GHHHHHHHHHHHE
T ss_pred ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh-ccCCCceeEEEEccccc--chhhHHHHHhhhc
Confidence 467999999999999999872 4688999888211111110 01246799999544211 4557788888999
Q ss_pred cCCCeEEEEEe
Q 035840 77 KKPNGVIAAWT 87 (213)
Q Consensus 77 k~pgG~l~~~~ 87 (213)
+ |||.+++=+
T Consensus 146 ~-~ggvii~DN 155 (205)
T PF01596_consen 146 R-PGGVIIADN 155 (205)
T ss_dssp E-EEEEEEEET
T ss_pred c-CCeEEEEcc
Confidence 9 999986543
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.44 E-value=0.012 Score=47.20 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=63.9
Q ss_pred eEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Ch--------hHHHHH
Q 035840 7 NVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DL--------PQFYKQ 71 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~--------~~~~~e 71 (213)
.++|||+...-+..|-+ ..|+...++||. .+.+.-++++|.|-|+.++.=-|. .+ +..++.
T Consensus 74 nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~----~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~ 149 (227)
T COG0220 74 NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV----EVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKL 149 (227)
T ss_pred CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH----HHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHH
Confidence 68999999998888776 248899999983 344444667799999999998888 22 478999
Q ss_pred HHHHhcCCCeEEEEEeCCCC
Q 035840 72 VKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 72 ~~rvLk~pgG~l~~~~~~~~ 91 (213)
++++|| |||.|.+.+-...
T Consensus 150 ~a~~Lk-~gG~l~~aTD~~~ 168 (227)
T COG0220 150 YARKLK-PGGVLHFATDNEE 168 (227)
T ss_pred HHHHcc-CCCEEEEEecCHH
Confidence 999999 9999988766533
No 166
>PLN02476 O-methyltransferase
Probab=96.42 E-value=0.0065 Score=50.21 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCC--CCCCceeeeeechhhccCChhHHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNV--ATQSSVDLVTIAAALHWFDLPQFYKQVKWV 75 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~--~~~~sfDlV~~~~~~hw~d~~~~~~e~~rv 75 (213)
.++|+++|.++++.+.|++. .++++..+++... +..+. -.+++||+|+.-..= -+....+..+.+.
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~---L~~l~~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~l 217 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES---LKSMIQNGEGSSYDFAFVDADK--RMYQDYFELLLQL 217 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH---HHHHHhcccCCCCCEEEECCCH--HHHHHHHHHHHHh
Confidence 46899999999999999972 4688888887211 11110 124689999954321 1456778899999
Q ss_pred hcCCCeEEEE
Q 035840 76 LKKPNGVIAA 85 (213)
Q Consensus 76 Lk~pgG~l~~ 85 (213)
|+ |||.+++
T Consensus 218 L~-~GGvIV~ 226 (278)
T PLN02476 218 VR-VGGVIVM 226 (278)
T ss_pred cC-CCcEEEE
Confidence 99 9999864
No 167
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.37 E-value=0.00078 Score=52.82 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=56.7
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKP 79 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~p 79 (213)
++++|.+|+|+++|..|+.+.+++. |.+-.+ -+|--.+-.+|+|+|...+-=+ |+-+.++.++.+|+ |
T Consensus 130 m~p~feevyATElS~tMr~rL~kk~---ynVl~~-------~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~-p 198 (288)
T KOG3987|consen 130 MAPTFEEVYATELSWTMRDRLKKKN---YNVLTE-------IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLA-P 198 (288)
T ss_pred hcchHHHHHHHHhhHHHHHHHhhcC---Cceeee-------hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhc-c
Confidence 3678999999999999999988651 222212 2333345579999999999644 99999999999999 8
Q ss_pred -CeEEEE
Q 035840 80 -NGVIAA 85 (213)
Q Consensus 80 -gG~l~~ 85 (213)
+|++++
T Consensus 199 sngrviv 205 (288)
T KOG3987|consen 199 SNGRVIV 205 (288)
T ss_pred CCCcEEE
Confidence 888753
No 168
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.32 E-value=0.01 Score=49.49 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=49.6
Q ss_pred CeEEEEeCCHHHHHHhhcC---CCc--eEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 6 KNVIATDTSPKQLEFAIKL---PNI--RYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~v--~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
++|+|+|++|..++.|++. .++ ++..... .+ .....||+|+++--.+-+ ......+.++|+ ||
T Consensus 185 ~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~-------~~--~~~~~~dlvvANI~~~vL--~~l~~~~~~~l~-~~ 252 (295)
T PF06325_consen 185 KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS-------ED--LVEGKFDLVVANILADVL--LELAPDIASLLK-PG 252 (295)
T ss_dssp SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT-------SC--TCCS-EEEEEEES-HHHH--HHHHHHCHHHEE-EE
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe-------cc--cccccCCEEEECCCHHHH--HHHHHHHHHhhC-CC
Confidence 4799999999999999972 111 3333222 22 234789999988766432 356678899999 99
Q ss_pred eEEEEEeCC
Q 035840 81 GVIAAWTYT 89 (213)
Q Consensus 81 G~l~~~~~~ 89 (213)
|.|++++.-
T Consensus 253 G~lIlSGIl 261 (295)
T PF06325_consen 253 GYLILSGIL 261 (295)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEcccc
Confidence 999987654
No 169
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.28 E-value=0.015 Score=47.98 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=51.7
Q ss_pred CeEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC--ChhHHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF--DLPQFYKQVKWV 75 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~--d~~~~~~e~~rv 75 (213)
..|+++|.++..++.|++. .+++|.++++ .+.+.+-..||+|+.+....-- +..+.+.++.+.
T Consensus 147 ~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~-------~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~ 219 (276)
T PF03059_consen 147 ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV-------LDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKH 219 (276)
T ss_dssp -EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G-------GGG-GG----SEEEE-TT-S----SHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch-------hccccccccCCEEEEhhhcccccchHHHHHHHHHhh
Confidence 4799999999999999872 4578888877 4444444679999977666533 889999999999
Q ss_pred hcCCCeEEEEEeC
Q 035840 76 LKKPNGVIAAWTY 88 (213)
Q Consensus 76 Lk~pgG~l~~~~~ 88 (213)
++ ||+.+++...
T Consensus 220 m~-~ga~l~~Rsa 231 (276)
T PF03059_consen 220 MA-PGARLVVRSA 231 (276)
T ss_dssp S--TTSEEEEEE-
T ss_pred CC-CCcEEEEecc
Confidence 99 9999987743
No 170
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.07 E-value=0.019 Score=42.46 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred eEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhh-----ccC--Ch---hHHH
Q 035840 7 NVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL-----HWF--DL---PQFY 69 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~-----hw~--d~---~~~~ 69 (213)
+|+|.|+-+..|+.++++ .++++....=+ .+.+. ++++.+|+|+.+.+. |=+ .+ -+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe----~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHE----NLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GG----GGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHH----HHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 699999999999999973 35777765431 12222 334689999988766 211 22 3788
Q ss_pred HHHHHHhcCCCeEEEEEeCCC
Q 035840 70 KQVKWVLKKPNGVIAAWTYTM 90 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~~~~~ 90 (213)
+.+.+.|+ |||.+.+..|..
T Consensus 76 ~~al~lL~-~gG~i~iv~Y~G 95 (140)
T PF06962_consen 76 EAALELLK-PGGIITIVVYPG 95 (140)
T ss_dssp HHHHHHEE-EEEEEEEEE--S
T ss_pred HHHHHhhc-cCCEEEEEEeCC
Confidence 99999999 999999888753
No 171
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.056 Score=44.96 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=64.9
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc-CCh-----hHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW-FDL-----PQFYKQVK 73 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw-~d~-----~~~~~e~~ 73 (213)
.+|+-+|.|...++.||+. .+..+..++. -+ +..+ +||+|+++==||= .+. .+.+.++.
T Consensus 183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-------~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~ 253 (300)
T COG2813 183 AKLTLVDVNARAVESARKNLAANGVENTEVWASNL-------YE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAA 253 (300)
T ss_pred CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-------cc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence 5999999999999999982 2223344443 22 3445 8999999888872 222 36889999
Q ss_pred HHhcCCCeEEEEEeCCCCCcChHHHHhcccc
Q 035840 74 WVLKKPNGVIAAWTYTMPEINESVGAVFKPF 104 (213)
Q Consensus 74 rvLk~pgG~l~~~~~~~~~~~~~~~~~~~~~ 104 (213)
+.|+ +||.|.+..++.+...+.++++|.+.
T Consensus 254 ~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~v 283 (300)
T COG2813 254 RHLK-PGGELWIVANRHLPYEKKLKELFGNV 283 (300)
T ss_pred Hhhc-cCCEEEEEEcCCCChHHHHHHhcCCE
Confidence 9999 99999988887666656677777644
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.95 E-value=0.031 Score=44.93 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=44.9
Q ss_pred ccc-CCeEEEEeCCHHHHHH-hhcCCCce-EEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 2 AKI-YKNVIATDTSPKQLEF-AIKLPNIR-YQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 2 a~~-~~~V~gvD~S~~ml~~-Ar~~~~v~-~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
+++ .++|+|+|+|++|+.. .++.+.+. +...++.. -+.++.+.+-..+|+++++.++ .+..+.+.|+
T Consensus 94 ~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~--~~~~~~~~d~~~~DvsfiS~~~-------~l~~i~~~l~- 163 (228)
T TIGR00478 94 LQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRY--VTPADIFPDFATFDVSFISLIS-------ILPELDLLLN- 163 (228)
T ss_pred HHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCccc--CCHhHcCCCceeeeEEEeehHh-------HHHHHHHHhC-
Confidence 344 4689999999988886 55555543 34444421 1223333233467766665544 4889999999
Q ss_pred CCeEEEE
Q 035840 79 PNGVIAA 85 (213)
Q Consensus 79 pgG~l~~ 85 (213)
| |.+.+
T Consensus 164 ~-~~~~~ 169 (228)
T TIGR00478 164 P-NDLTL 169 (228)
T ss_pred c-CeEEE
Confidence 9 76543
No 173
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.038 Score=44.80 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk 77 (213)
-++|+..|.-++..+.|++. .++++..+|. .+.-+++ .||.|+.=. -||-.+++.+..+||
T Consensus 119 ~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv-------~~~~~~~-~vDav~LDm----p~PW~~le~~~~~Lk 186 (256)
T COG2519 119 EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV-------REGIDEE-DVDAVFLDL----PDPWNVLEHVSDALK 186 (256)
T ss_pred CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc-------ccccccc-ccCEEEEcC----CChHHHHHHHHHHhC
Confidence 36999999999999999972 2367777766 4443444 799998532 277799999999999
Q ss_pred CCCeEEEEEeCC
Q 035840 78 KPNGVIAAWTYT 89 (213)
Q Consensus 78 ~pgG~l~~~~~~ 89 (213)
|||.+++++-+
T Consensus 187 -pgg~~~~y~P~ 197 (256)
T COG2519 187 -PGGVVVVYSPT 197 (256)
T ss_pred -CCcEEEEEcCC
Confidence 99999877554
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.87 E-value=0.028 Score=44.25 Aligned_cols=81 Identities=11% Similarity=-0.035 Sum_probs=48.2
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHH-
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKW- 74 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~r- 74 (213)
++..++|+++|.++..++.|++. .++++..+++. +.++....+||+|++.==++.=-...++..+..
T Consensus 73 sr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~------~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~ 146 (199)
T PRK10909 73 SRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL------SFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDN 146 (199)
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH------HHHhhcCCCceEEEECCCCCCChHHHHHHHHHHC
Confidence 34567999999999999998872 35677777661 222223456999996433321111233333333
Q ss_pred -HhcCCCeEEEEEeCC
Q 035840 75 -VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 -vLk~pgG~l~~~~~~ 89 (213)
+|+ |+|.+++....
T Consensus 147 ~~l~-~~~iv~ve~~~ 161 (199)
T PRK10909 147 GWLA-DEALIYVESEV 161 (199)
T ss_pred CCcC-CCcEEEEEecC
Confidence 256 77777665443
No 175
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.034 Score=44.37 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=56.4
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccC--CCCCCceeeeeechhhccC-ChhHHHHHH
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQN--VATQSSVDLVTIAAALHWF-DLPQFYKQV 72 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~~~~~hw~-d~~~~~~e~ 72 (213)
+.-++|+++|+.++-.+.+... .++++.++++-. .+.++ ..+.++||+++.= ||- +...-+.++
T Consensus 96 p~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e---sLd~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~ 169 (237)
T KOG1663|consen 96 PEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE---SLDELLADGESGTFDFAFVD---ADKDNYSNYYERL 169 (237)
T ss_pred CCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh---hHHHHHhcCCCCceeEEEEc---cchHHHHHHHHHH
Confidence 4578999999999998888762 468889887732 12222 1467899998742 454 445788999
Q ss_pred HHHhcCCCeEEEEE
Q 035840 73 KWVLKKPNGVIAAW 86 (213)
Q Consensus 73 ~rvLk~pgG~l~~~ 86 (213)
.+.+| +||.+++=
T Consensus 170 l~Llr-~GGvi~~D 182 (237)
T KOG1663|consen 170 LRLLR-VGGVIVVD 182 (237)
T ss_pred Hhhcc-cccEEEEe
Confidence 99999 89999753
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.03 Score=44.13 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=55.1
Q ss_pred cCCeEEEEeCCHHHHHHhhcC----------------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL----------------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQ 67 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~----------------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~ 67 (213)
.+..+.|||.-++.++.+++. +++.++++|+ ...-.+...+|.|+++. +..+
T Consensus 107 ~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg-------r~g~~e~a~YDaIhvGA-----aa~~ 174 (237)
T KOG1661|consen 107 TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG-------RKGYAEQAPYDAIHVGA-----AASE 174 (237)
T ss_pred CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc-------cccCCccCCcceEEEcc-----Cccc
Confidence 355569999999999999871 4567778887 55556778899999984 4567
Q ss_pred HHHHHHHHhcCCCeEEEEE
Q 035840 68 FYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~~~ 86 (213)
..+++...|+ |||++.+-
T Consensus 175 ~pq~l~dqL~-~gGrllip 192 (237)
T KOG1661|consen 175 LPQELLDQLK-PGGRLLIP 192 (237)
T ss_pred cHHHHHHhhc-cCCeEEEe
Confidence 8889999999 89998753
No 177
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.63 E-value=0.12 Score=42.90 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCeEEEEeCCHHHHHHhhc------CCCc-eEEecCCCCcchhhccCCCCCCceeeeeechhhccC-C---hhHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIK------LPNI-RYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-D---LPQFYKQVK 73 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~~~v-~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d---~~~~~~e~~ 73 (213)
-.+|.-.|.|+.-++.+++ ..++ +|..++| -|.+.+.--+-..++++++-.+.-| | ...+++.+.
T Consensus 161 ~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA----fd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~ 236 (311)
T PF12147_consen 161 PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA----FDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLA 236 (311)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC----CCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHH
Confidence 3589999999999999997 2455 9999988 2223333224457999999888877 6 456899999
Q ss_pred HHhcCCCeEEEEEe
Q 035840 74 WVLKKPNGVIAAWT 87 (213)
Q Consensus 74 rvLk~pgG~l~~~~ 87 (213)
+++. |||.++..+
T Consensus 237 ~al~-pgG~lIyTg 249 (311)
T PF12147_consen 237 RALE-PGGYLIYTG 249 (311)
T ss_pred HHhC-CCcEEEEcC
Confidence 9999 999995544
No 178
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.61 E-value=0.015 Score=45.80 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=34.8
Q ss_pred CCceeeeeechhhccC---ChhHHHHHHHHHhcCCCeEEEEEe
Q 035840 48 QSSVDLVTIAAALHWF---DLPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 48 ~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.++||.|++.-.+|-+ ..+..++.+.++|+ |||.|++++
T Consensus 100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YG 141 (204)
T PF06080_consen 100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYG 141 (204)
T ss_pred CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeC
Confidence 5689999999999977 66788899999999 999998875
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.57 E-value=0.055 Score=41.79 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=44.7
Q ss_pred eEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-----C----hhHHHH
Q 035840 7 NVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-----D----LPQFYK 70 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-----d----~~~~~~ 70 (213)
+++|+|+++.|++.|++. ..+.+...++ .++++.++++|.|++.-=+.-- + ...+++
T Consensus 63 ~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~-------~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~ 135 (179)
T PF01170_consen 63 KIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA-------RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLR 135 (179)
T ss_dssp -EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G-------GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHH
T ss_pred cEEecCCCHHHHHHHHHHHHhcccCCceEEEecch-------hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHH
Confidence 489999999999999972 2356666666 8888788899999965333211 1 135668
Q ss_pred HHHHHhcCC
Q 035840 71 QVKWVLKKP 79 (213)
Q Consensus 71 e~~rvLk~p 79 (213)
++.|+|+ |
T Consensus 136 ~~~~~l~-~ 143 (179)
T PF01170_consen 136 ELKRVLK-P 143 (179)
T ss_dssp HHHCHST-T
T ss_pred HHHHHCC-C
Confidence 8888899 7
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.48 E-value=0.046 Score=42.47 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=55.1
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
.+|+-+|.+..-+..-+. .+|++...+.+ |+ +....+||+|++.... .....+.-+.+.|+ +
T Consensus 73 ~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~-------E~-~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~-~ 140 (184)
T PF02527_consen 73 LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA-------EE-PEYRESFDVVTARAVA---PLDKLLELARPLLK-P 140 (184)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H-------HH-TTTTT-EEEEEEESSS---SHHHHHHHHGGGEE-E
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee-------cc-cccCCCccEEEeehhc---CHHHHHHHHHHhcC-C
Confidence 468999999988777665 47899999988 66 5677889999998766 77888899999999 8
Q ss_pred CeEEEEE
Q 035840 80 NGVIAAW 86 (213)
Q Consensus 80 gG~l~~~ 86 (213)
||.++++
T Consensus 141 ~G~~l~~ 147 (184)
T PF02527_consen 141 GGRLLAY 147 (184)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 9998765
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.36 E-value=0.045 Score=44.55 Aligned_cols=70 Identities=19% Similarity=0.070 Sum_probs=48.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCcee---eeeechhhccCChhHHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVD---LVTIAAALHWFDLPQFYKQVKW 74 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfD---lV~~~~~~hw~d~~~~~~e~~r 74 (213)
++.+.+|+|+|+++.|++.+++. +++++..+|+ .+.+++ ++| +|+++.-+|+ +..-+.+
T Consensus 48 ~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~-------~~~~~~--~~d~~~~vvsNlPy~i-----~~~il~~ 113 (253)
T TIGR00755 48 LKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA-------LKVDLP--DFPKQLKVVSNLPYNI-----SSPLIFK 113 (253)
T ss_pred HHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch-------hcCChh--HcCCcceEEEcCChhh-----HHHHHHH
Confidence 45677899999999999999873 5677788777 666554 466 8888877664 3344555
Q ss_pred Hh-cCCCeEEEEE
Q 035840 75 VL-KKPNGVIAAW 86 (213)
Q Consensus 75 vL-k~pgG~l~~~ 86 (213)
+| . +|+..++.
T Consensus 114 ll~~-~~~~~~~~ 125 (253)
T TIGR00755 114 LLEK-PKFRLAVL 125 (253)
T ss_pred Hhcc-CCCceEEE
Confidence 55 5 66654443
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.29 E-value=0.017 Score=47.59 Aligned_cols=51 Identities=8% Similarity=-0.096 Sum_probs=38.1
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC---CCceEEecCCCCcchhhccCCCCCCceeeeeechh
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL---PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAA 59 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~---~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~ 59 (213)
++++.+|+|+|+|+.|++.+++. +++++..+|+ .++++++-..|.|+++--
T Consensus 61 ~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~-------~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 61 LERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA-------LKVDLSELQPLKVVANLP 114 (272)
T ss_pred HHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh-------hcCCHHHcCcceEEEeCC
Confidence 45677999999999999999874 5778888877 666655422577777643
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.26 E-value=0.09 Score=40.09 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=64.1
Q ss_pred CeEEEEeCCHHHHHHhhc-CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhcCCCe
Q 035840 6 KNVIATDTSPKQLEFAIK-LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~-~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~pgG 81 (213)
..++++|.|++....-.+ ++++.++.|++..+...+.+ ..+.-||.|+|+-=+--+ -.-+.++++...|+ +||
T Consensus 74 ~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg 150 (194)
T COG3963 74 ESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGG 150 (194)
T ss_pred cceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh--cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCC
Confidence 468999999999999887 58888999998544333333 556779999998877544 34466788999999 999
Q ss_pred EEEEEeCCC
Q 035840 82 VIAAWTYTM 90 (213)
Q Consensus 82 ~l~~~~~~~ 90 (213)
.|....|+.
T Consensus 151 ~lvqftYgp 159 (194)
T COG3963 151 PLVQFTYGP 159 (194)
T ss_pred eEEEEEecC
Confidence 999888883
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.20 E-value=0.085 Score=46.94 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=49.9
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC-CCCCceeeee----echhhccC-Ch--------
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV-ATQSSVDLVT----IAAALHWF-DL-------- 65 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~----~~~~~hw~-d~-------- 65 (213)
+.|+++|+|+..++..++. .++.....++ ..++ ..++.||.|+ |+-.=.|- ++
T Consensus 139 g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-------~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~ 211 (470)
T PRK11933 139 GAIVANEYSASRVKVLHANISRCGVSNVALTHFDG-------RVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSP 211 (470)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-------hhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCH
Confidence 5899999999999888762 4555556665 3321 2345799999 33221222 32
Q ss_pred ----------hHHHHHHHHHhcCCCeEEEEEe
Q 035840 66 ----------PQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 66 ----------~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.+.+..+.+.|| |||.|+..+
T Consensus 212 ~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYST 242 (470)
T PRK11933 212 ESNLEIAATQRELIESAFHALK-PGGTLVYST 242 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEC
Confidence 467788899999 999986443
No 185
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.16 E-value=0.097 Score=42.60 Aligned_cols=73 Identities=22% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCeEEEEeCCHHHHHHhhc------C-CCceEEecCCCCcchhhccCCCC---CCceeeeeechhhccCChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIK------L-PNIRYQLTPPTMSITELEQNVAT---QSSVDLVTIAAALHWFDLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~-~~v~~~~~~~~~~~~d~~~~~~~---~~sfDlV~~~~~~hw~d~~~~~~e~~r 74 (213)
.++|+..|..++..+.|++ . .++++...|. .+-.++ ++.+|.|+.=.= +|-.++..+.+
T Consensus 65 ~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv-------~~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~ 133 (247)
T PF08704_consen 65 TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV-------CEEGFDEELESDFDAVFLDLP----DPWEAIPHAKR 133 (247)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G-------GCG--STT-TTSEEEEEEESS----SGGGGHHHHHH
T ss_pred CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce-------ecccccccccCcccEEEEeCC----CHHHHHHHHHH
Confidence 4699999999999999997 2 4788888776 322232 367999874322 56689999999
Q ss_pred Hh-cCCCeEEEEEeCC
Q 035840 75 VL-KKPNGVIAAWTYT 89 (213)
Q Consensus 75 vL-k~pgG~l~~~~~~ 89 (213)
+| | |||.++++.-.
T Consensus 134 ~L~~-~gG~i~~fsP~ 148 (247)
T PF08704_consen 134 ALKK-PGGRICCFSPC 148 (247)
T ss_dssp HE-E-EEEEEEEEESS
T ss_pred HHhc-CCceEEEECCC
Confidence 99 8 99999887554
No 186
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.12 E-value=0.12 Score=36.98 Aligned_cols=79 Identities=22% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
+.+|+++|.|+.-++.+++..-..+.....+.....+.++ .+...+|+|+-+.+ ....+.+...+|+ |||++.
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~g-----~~~~~~~~~~~l~-~~G~~v 86 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIREL-TGGRGVDVVIDCVG-----SGDTLQEAIKLLR-PGGRIV 86 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHH-TTTSSEEEEEESSS-----SHHHHHHHHHHEE-EEEEEE
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccccccccccccc-cccccceEEEEecC-----cHHHHHHHHHHhc-cCCEEE
Confidence 5799999999999999998742223333332122233332 33457999996655 3689999999999 999999
Q ss_pred EEeCCC
Q 035840 85 AWTYTM 90 (213)
Q Consensus 85 ~~~~~~ 90 (213)
+.....
T Consensus 87 ~vg~~~ 92 (130)
T PF00107_consen 87 VVGVYG 92 (130)
T ss_dssp EESSTS
T ss_pred EEEccC
Confidence 887664
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.98 E-value=0.039 Score=45.10 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=41.3
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhcc
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW 62 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw 62 (213)
++...+|+|+|+++.|++.+++. +++++..+|+ .+.+++ .||.|+++--++.
T Consensus 48 ~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~-------~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 48 AKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA-------LKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred HHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc-------ccCCch--hceEEEEcCCccc
Confidence 45567999999999999999873 5678888877 666554 3899999888765
No 188
>PLN02672 methionine S-methyltransferase
Probab=94.96 E-value=0.09 Score=51.14 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=16.6
Q ss_pred CeEEEEeCCHHHHHHhhc
Q 035840 6 KNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~ 23 (213)
++|+|+|+|+.+++.|++
T Consensus 143 ~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 143 SKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred CEEEEEECCHHHHHHHHH
Confidence 589999999999999975
No 189
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.90 E-value=0.088 Score=45.48 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=49.7
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC-CCCCceeeeeechhhccCChhHHHHHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV-ATQSSVDLVTIAAALHWFDLPQFYKQVK 73 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~d~~~~~~e~~ 73 (213)
||..+++|+|+|.|+.+++.|++. .+++|..+++ ++.. -..++||+|++.=--.-+ ..+++..+.
T Consensus 251 la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-------~~~~~~~~~~~D~vi~DPPr~G~-~~~~l~~l~ 322 (374)
T TIGR02085 251 CAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-------AKFATAQMSAPELVLVNPPRRGI-GKELCDYLS 322 (374)
T ss_pred HhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-------HHHHHhcCCCCCEEEECCCCCCC-cHHHHHHHH
Confidence 356678999999999999999972 4678888877 3321 112459998753111001 123444443
Q ss_pred HHhcCCCeEEEEEeC
Q 035840 74 WVLKKPNGVIAAWTY 88 (213)
Q Consensus 74 rvLk~pgG~l~~~~~ 88 (213)
-++ |++.+++.+.
T Consensus 323 -~~~-p~~ivyvsc~ 335 (374)
T TIGR02085 323 -QMA-PKFILYSSCN 335 (374)
T ss_pred -hcC-CCeEEEEEeC
Confidence 478 8888877754
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.88 E-value=0.059 Score=46.71 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=50.3
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
.+|+++|+++..++.+++. .++++..+++ ..+....+.||+|..- -+ =.+..++..+.+.++ |
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da-------~~~l~~~~~fD~V~lD-P~--Gs~~~~l~~al~~~~-~ 150 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA-------NALLHEERKFDVVDID-PF--GSPAPFLDSAIRSVK-R 150 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH-------HHHHhhcCCCCEEEEC-CC--CCcHHHHHHHHHHhc-C
Confidence 4899999999999999862 3455666666 4321114569999863 11 133577788888899 9
Q ss_pred CeEEEEEe
Q 035840 80 NGVIAAWT 87 (213)
Q Consensus 80 gG~l~~~~ 87 (213)
||.+++..
T Consensus 151 ~gilyvSA 158 (382)
T PRK04338 151 GGLLCVTA 158 (382)
T ss_pred CCEEEEEe
Confidence 99998774
No 191
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.84 E-value=0.02 Score=43.60 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=26.8
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc----C---CCceEEecCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK----L---PNIRYQLTPP 34 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~----~---~~v~~~~~~~ 34 (213)
||+.|.+|+|+|+++..++.|++ + .++.|+.+|.
T Consensus 17 FA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~ 57 (163)
T PF09445_consen 17 FARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF 57 (163)
T ss_dssp HHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H
T ss_pred HHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH
Confidence 47889999999999999999998 2 4788888877
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.83 E-value=0.11 Score=40.88 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=45.9
Q ss_pred cCCeEEEEeCCHHHHHHhhc-------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 4 IYKNVIATDTSPKQLEFAIK-------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~-------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
..++|+|+|++|..++..++ ...+....+|+ .++.. .+.+|.|++..=- .-..++..+.+++
T Consensus 124 ~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~-------~~~~~-~~~~drvim~lp~---~~~~fl~~~~~~~ 192 (200)
T PF02475_consen 124 KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA-------REFLP-EGKFDRVIMNLPE---SSLEFLDAALSLL 192 (200)
T ss_dssp -SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G-------GG----TT-EEEEEE--TS---SGGGGHHHHHHHE
T ss_pred CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH-------HHhcC-ccccCEEEECChH---HHHHHHHHHHHHh
Confidence 57799999999999999887 14466777777 55533 7889998875421 2335677899999
Q ss_pred cCCCeEEE
Q 035840 77 KKPNGVIA 84 (213)
Q Consensus 77 k~pgG~l~ 84 (213)
| +||.+.
T Consensus 193 ~-~~g~ih 199 (200)
T PF02475_consen 193 K-EGGIIH 199 (200)
T ss_dssp E-EEEEEE
T ss_pred c-CCcEEE
Confidence 9 798763
No 193
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.80 E-value=0.034 Score=47.79 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=49.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC-C--------CCCceeeeeechhhccCCh
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV-A--------TQSSVDLVTIAAALHWFDL 65 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~-~--------~~~sfDlV~~~~~~hw~d~ 65 (213)
|++.+++|+|+|.|+.|++.|++. .+++|..++++.....+.... + ....||+|+. ||
T Consensus 224 la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-------DP 296 (362)
T PRK05031 224 LARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV-------DP 296 (362)
T ss_pred HHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE-------CC
Confidence 466788999999999999999972 468888888732111111000 0 0224788763 66
Q ss_pred hHH--HHHHHHH-hcCCCeEEEEEeCC
Q 035840 66 PQF--YKQVKWV-LKKPNGVIAAWTYT 89 (213)
Q Consensus 66 ~~~--~~e~~rv-Lk~pgG~l~~~~~~ 89 (213)
+.. ..++.+. ++ |++.+++.+.-
T Consensus 297 PR~G~~~~~l~~l~~-~~~ivyvSC~p 322 (362)
T PRK05031 297 PRAGLDDETLKLVQA-YERILYISCNP 322 (362)
T ss_pred CCCCCcHHHHHHHHc-cCCEEEEEeCH
Confidence 532 3455333 45 77777666554
No 194
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.74 E-value=0.19 Score=40.05 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=49.8
Q ss_pred CeEEEEeCCH----HHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 6 KNVIATDTSP----KQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 6 ~~V~gvD~S~----~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
+.|+||+.|+ +.+..|++++|+-=..+||-.= +.-..--..+|+|++--+ |-=...-+..++..-|| +||
T Consensus 99 G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P----~~Y~~lv~~VDvI~~DVa-Qp~Qa~I~~~Na~~fLk-~gG 172 (229)
T PF01269_consen 99 GVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP----EKYRMLVEMVDVIFQDVA-QPDQARIAALNARHFLK-PGG 172 (229)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG----GGGTTTS--EEEEEEE-S-STTHHHHHHHHHHHHEE-EEE
T ss_pred CcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh----HHhhcccccccEEEecCC-ChHHHHHHHHHHHhhcc-CCc
Confidence 5899999999 7788899999987677776210 111111237999997655 22234456678888999 899
Q ss_pred EEEEE
Q 035840 82 VIAAW 86 (213)
Q Consensus 82 ~l~~~ 86 (213)
.+++.
T Consensus 173 ~~~i~ 177 (229)
T PF01269_consen 173 HLIIS 177 (229)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98865
No 195
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.64 E-value=0.035 Score=49.13 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=38.8
Q ss_pred ccCCCCCCceeeeeechhhc-c---CChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 42 EQNVATQSSVDLVTIAAALH-W---FDLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 42 ~~~~~~~~sfDlV~~~~~~h-w---~d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
|.++.=++++|||++...|. | ++....+-||.|+|| |||.++|....
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD~~ 469 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRDTV 469 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEeccH
Confidence 55667789999999887773 3 488899999999999 99999887544
No 196
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.62 E-value=0.042 Score=44.92 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=32.0
Q ss_pred ceeeeeechhhccC--Ch---hHHHHHHHHHhcCCCeEEEEEeC
Q 035840 50 SVDLVTIAAALHWF--DL---PQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 50 sfDlV~~~~~~hw~--d~---~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
.||+|++..++.-+ |+ .++++++.++|| |||.|++...
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 59999999999765 54 578899999999 9999987654
No 197
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.62 E-value=0.023 Score=40.05 Aligned_cols=36 Identities=17% Similarity=0.555 Sum_probs=28.8
Q ss_pred ceeeeeechhhccC--Ch-----hHHHHHHHHHhcCCCeEEEEE
Q 035840 50 SVDLVTIAAALHWF--DL-----PQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 50 sfDlV~~~~~~hw~--d~-----~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.||+|+|.....|+ +. ..+|+.+++.|+ |||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEEe
Confidence 38999999999888 22 468999999999 99999663
No 198
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.05 Score=47.88 Aligned_cols=73 Identities=27% Similarity=0.346 Sum_probs=51.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCC---CCCCceeeeeechhhccCChh-----
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNV---ATQSSVDLVTIAAALHWFDLP----- 66 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~---~~~~sfDlV~~~~~~hw~d~~----- 66 (213)
||+++.+|+|+|+++++++.|++ ..|+.|..+++ ++.. .....+|.|+. ||+
T Consensus 311 lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a-------e~~~~~~~~~~~~d~Vvv-------DPPR~G~~ 376 (432)
T COG2265 311 LAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA-------EEFTPAWWEGYKPDVVVV-------DPPRAGAD 376 (432)
T ss_pred hcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH-------HHHhhhccccCCCCEEEE-------CCCCCCCC
Confidence 68899999999999999999997 36789999988 4432 23356788773 664
Q ss_pred -HHHHHHHHHhcCCCeEEEEEeCC
Q 035840 67 -QFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 67 -~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
.+++.+.+ ++ |-..++++|+-
T Consensus 377 ~~~lk~l~~-~~-p~~IvYVSCNP 398 (432)
T COG2265 377 REVLKQLAK-LK-PKRIVYVSCNP 398 (432)
T ss_pred HHHHHHHHh-cC-CCcEEEEeCCH
Confidence 34444444 45 56677777654
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.39 E-value=0.033 Score=47.77 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.6
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPP 34 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~ 34 (213)
|++.+++|+|+|+|+.|++.|++. .++++..+++
T Consensus 215 la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~ 254 (353)
T TIGR02143 215 LAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA 254 (353)
T ss_pred HHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH
Confidence 466778999999999999999972 4678888887
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.05 E-value=0.13 Score=46.27 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=59.8
Q ss_pred CeEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Ch--------hHHHH
Q 035840 6 KNVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DL--------PQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~--------~~~~~ 70 (213)
..++|+|++..-+..|-+ ..|+.+..++++. +... ++++++|-|+..+.=-|. .+ +..+.
T Consensus 372 ~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~----~~~~-~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~ 446 (506)
T PRK01544 372 ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL----ILND-LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLK 446 (506)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHh-cCcccccEEEEECCCCCCCCCCccccccCHHHHH
Confidence 479999999997776554 3677777766522 1232 789999999999988886 22 47899
Q ss_pred HHHHHhcCCCeEEEEEeCC
Q 035840 71 QVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~ 89 (213)
.++++|| |||.+.+.+..
T Consensus 447 ~~~~~Lk-~gG~i~~~TD~ 464 (506)
T PRK01544 447 ILQDKLK-DNGNLVFASDI 464 (506)
T ss_pred HHHHhcC-CCCEEEEEcCC
Confidence 9999999 99999877655
No 201
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.68 E-value=0.25 Score=42.08 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=58.8
Q ss_pred cccCCe-EEEEeCCHHHHHHhhcC------CC-ceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHH
Q 035840 2 AKIYKN-VIATDTSPKQLEFAIKL------PN-IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVK 73 (213)
Q Consensus 2 a~~~~~-V~gvD~S~~ml~~Ar~~------~~-v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~ 73 (213)
|.+.+. |+|+|++|..++..++. .+ +....||+ .+....-+.+|-|+++.-- +-.+++..+.
T Consensus 207 Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~-------rev~~~~~~aDrIim~~p~---~a~~fl~~A~ 276 (341)
T COG2520 207 AKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA-------REVAPELGVADRIIMGLPK---SAHEFLPLAL 276 (341)
T ss_pred hhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH-------HHhhhccccCCEEEeCCCC---cchhhHHHHH
Confidence 445554 99999999999998871 23 66777877 6665444789999987543 5678899999
Q ss_pred HHhcCCCeEEEEEeCC
Q 035840 74 WVLKKPNGVIAAWTYT 89 (213)
Q Consensus 74 rvLk~pgG~l~~~~~~ 89 (213)
+.+| +||.+-+....
T Consensus 277 ~~~k-~~g~iHyy~~~ 291 (341)
T COG2520 277 ELLK-DGGIIHYYEFV 291 (341)
T ss_pred HHhh-cCcEEEEEecc
Confidence 9999 89998766655
No 202
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.63 E-value=0.26 Score=43.53 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=57.8
Q ss_pred CCeEEEEeCCHHHHHHhhc-----CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-----------ChhHH
Q 035840 5 YKNVIATDTSPKQLEFAIK-----LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-----------DLPQF 68 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~-----~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-----------d~~~~ 68 (213)
|.-|+-+|.|+--++.... .+...+...+. ..+.|++.|||+|+-=-.++-+ -....
T Consensus 71 ~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-------~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~ 143 (482)
T KOG2352|consen 71 FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-------DQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNM 143 (482)
T ss_pred CCCceeccccHHHHHHHHhccccCCcceEEEEecc-------hhccCCCcceeEEEecCccccccCCchhhhhhHHhhHH
Confidence 5678999999988887654 35567778777 8889999999999955555322 23456
Q ss_pred HHHHHHHhcCCCeEEEEEeC
Q 035840 69 YKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 69 ~~e~~rvLk~pgG~l~~~~~ 88 (213)
+.+++|+|+ |||++...++
T Consensus 144 ~~eVsrvl~-~~gk~~svtl 162 (482)
T KOG2352|consen 144 LDEVSRVLA-PGGKYISVTL 162 (482)
T ss_pred HhhHHHHhc-cCCEEEEEEe
Confidence 789999999 9999875555
No 203
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.61 E-value=0.098 Score=41.49 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=36.4
Q ss_pred hhccCCC---CCCceeeeeechhhccC-Ch---hHHHHHHHHHhcCCCeE-----EEEE
Q 035840 40 ELEQNVA---TQSSVDLVTIAAALHWF-DL---PQFYKQVKWVLKKPNGV-----IAAW 86 (213)
Q Consensus 40 d~~~~~~---~~~sfDlV~~~~~~hw~-d~---~~~~~e~~rvLk~pgG~-----l~~~ 86 (213)
||-+.|+ +.++||+|.++..+.++ ++ ...+..+++.|+ |+|. |.+.
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlV 148 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLV 148 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEE
Confidence 4455554 46789999999999999 44 577888899999 9999 6554
No 204
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.57 E-value=0.089 Score=43.97 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=39.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhc-------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC
Q 035840 2 AKIYKNVIATDTSPKQLEFAIK-------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF 63 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~-------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~ 63 (213)
+....+|+|+|+++.|++.+++ .+++++..+|+ .+.++ ..||.|+++--.++-
T Consensus 55 l~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da-------l~~~~--~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 55 LQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA-------LKTEF--PYFDVCVANVPYQIS 114 (294)
T ss_pred HHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH-------hhhcc--cccCEEEecCCcccC
Confidence 4456789999999999999986 24677888877 44443 358999987766664
No 205
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.31 E-value=0.38 Score=41.11 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=53.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCC-cchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTM-SITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~-~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
.++|+++|++++-++.|++.-.........+. ......+. .....+|+|+=+.+ ...++.++.+++| |||++
T Consensus 193 a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~-t~g~g~D~vie~~G-----~~~~~~~ai~~~r-~gG~v 265 (350)
T COG1063 193 ASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILEL-TGGRGADVVIEAVG-----SPPALDQALEALR-PGGTV 265 (350)
T ss_pred CceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHH-hCCCCCCEEEECCC-----CHHHHHHHHHHhc-CCCEE
Confidence 36999999999999999985444444333210 00000111 11236999997666 4569999999999 99999
Q ss_pred EEEeCCCC
Q 035840 84 AAWTYTMP 91 (213)
Q Consensus 84 ~~~~~~~~ 91 (213)
.+......
T Consensus 266 ~~vGv~~~ 273 (350)
T COG1063 266 VVVGVYGG 273 (350)
T ss_pred EEEeccCC
Confidence 98776533
No 206
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.21 E-value=0.1 Score=44.69 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=27.1
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc------CCCceEEecCCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK------LPNIRYQLTPPT 35 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~ 35 (213)
||+++++|+|||.++++++.|++ ..|++|..++++
T Consensus 214 la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 214 LAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 57899999999999999999997 368899988873
No 207
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.08 E-value=0.27 Score=42.10 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=51.8
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-------------CCceEEecCCCCcchhhccC-CCCCCceeeeeec------hhhcc
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-------------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIA------AALHW 62 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-------------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~------~~~hw 62 (213)
+.+.+|+-||+.|.|++.+++. |.++.+..|+ -+| .-..+.||.|+.- .++.=
T Consensus 311 P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA-------f~wlr~a~~~fD~vIVDl~DP~tps~~r 383 (508)
T COG4262 311 PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA-------FQWLRTAADMFDVVIVDLPDPSTPSIGR 383 (508)
T ss_pred CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH-------HHHHHhhcccccEEEEeCCCCCCcchhh
Confidence 3578999999999999999951 4566666655 222 2233468888742 22222
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEEe
Q 035840 63 FDLPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 63 ~d~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.=-..++.-+.|.|+ ++|.+.+..
T Consensus 384 lYS~eFY~ll~~~l~-e~Gl~VvQa 407 (508)
T COG4262 384 LYSVEFYRLLSRHLA-ETGLMVVQA 407 (508)
T ss_pred hhhHHHHHHHHHhcC-cCceEEEec
Confidence 222477888999999 999987653
No 208
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=92.99 E-value=0.16 Score=42.07 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=44.9
Q ss_pred CeEEEEeCCHHHHHHhhcC---CC---ceEEecCCCCcchhhccCCCCCCceeeeeec-----hh---h--ccC------
Q 035840 6 KNVIATDTSPKQLEFAIKL---PN---IRYQLTPPTMSITELEQNVATQSSVDLVTIA-----AA---L--HWF------ 63 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~~---v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~-----~~---~--hw~------ 63 (213)
.+|+|+|+|+..++.|++. .+ +.+..++. |+. +. ++||+|+++ .. . ..+
T Consensus 135 ~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl------f~~--~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~ 205 (280)
T COG2890 135 AEVIAVDISPDALALARENAERNGLVRVLVVQSDL------FEP--LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLL 205 (280)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec------ccc--cC-CceeEEEeCCCCCCCcccccChhhhccCHHH
Confidence 3999999999999999872 22 23333332 122 22 279999954 11 0 111
Q ss_pred ----------ChhHHHHHHHHHhcCCCeEEEEE
Q 035840 64 ----------DLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 64 ----------d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.....+.++.+.|+ |||.+++-
T Consensus 206 Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le 237 (280)
T COG2890 206 ALVGGGDGLEVYRRILGEAPDILK-PGGVLILE 237 (280)
T ss_pred HHccCccHHHHHHHHHHhhHHHcC-CCcEEEEE
Confidence 12356678888999 99988654
No 209
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.92 E-value=0.32 Score=43.30 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=38.4
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCc
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSS 50 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~s 50 (213)
||+.+++|+|+++||..++-|+.. .|++|.+|.+|.+-..+...+++..+
T Consensus 401 la~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~ 456 (534)
T KOG2187|consen 401 LARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSET 456 (534)
T ss_pred hhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCc
Confidence 588899999999999999999972 68899999886555444444334443
No 210
>PRK11524 putative methyltransferase; Provisional
Probab=92.68 E-value=0.17 Score=42.04 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCCCCceeeeee--chhh---------cc-----C-ChhHHHHHHHHHhcCCCeEEEEEe
Q 035840 45 VATQSSVDLVTI--AAAL---------HW-----F-DLPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 45 ~~~~~sfDlV~~--~~~~---------hw-----~-d~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.+++++||+|++ .+.. +| . -....+.++.|+|| |||.+++..
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~ 80 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN 80 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 367889999997 2221 11 1 12578899999999 999998753
No 211
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.65 E-value=0.079 Score=36.82 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=39.5
Q ss_pred eEEEEeCCH---HHHHHhhc---CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cCChhHHHHHHHHHhcCC
Q 035840 7 NVIATDTSP---KQLEFAIK---LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 7 ~V~gvD~S~---~ml~~Ar~---~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~d~~~~~~e~~rvLk~p 79 (213)
+++++|+.+ ...+..++ ..++++..++... .+.. ++++++|+|+.=- -| +-.....+..+.+.|+ |
T Consensus 25 ~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~l~~--~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~-~ 97 (106)
T PF13578_consen 25 KLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPD---FLPS--LPDGPIDLIFIDG-DHSYEAVLRDLENALPRLA-P 97 (106)
T ss_dssp --EEEESS------------GGG-BTEEEEES-THH---HHHH--HHH--EEEEEEES----HHHHHHHHHHHGGGEE-E
T ss_pred CEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHH---HHHH--cCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcC-C
Confidence 799999999 44444443 2568888887631 1222 2367899998543 22 2255677888889999 9
Q ss_pred CeEEEEEe
Q 035840 80 NGVIAAWT 87 (213)
Q Consensus 80 gG~l~~~~ 87 (213)
||.+++-+
T Consensus 98 ggviv~dD 105 (106)
T PF13578_consen 98 GGVIVFDD 105 (106)
T ss_dssp EEEEEEE-
T ss_pred CeEEEEeC
Confidence 99887643
No 212
>PRK13699 putative methylase; Provisional
Probab=92.64 E-value=0.14 Score=41.13 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=28.8
Q ss_pred CCCCCceeeeeec--h--hh--------------ccCChhHHHHHHHHHhcCCCeEEEEEe
Q 035840 45 VATQSSVDLVTIA--A--AL--------------HWFDLPQFYKQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 45 ~~~~~sfDlV~~~--~--~~--------------hw~d~~~~~~e~~rvLk~pgG~l~~~~ 87 (213)
.++++|+|+|+.- + +. .| ....+.|++|+|| |||.+++++
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew--~~~~l~E~~RVLK-pgg~l~if~ 72 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEW--LQPACNEMYRVLK-KDALMVSFY 72 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHH--HHHHHHHHHHHcC-CCCEEEEEe
Confidence 4788889988833 1 11 12 2578899999999 999987654
No 213
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.47 E-value=0.4 Score=38.21 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=49.9
Q ss_pred EEEeCCHHHHHHhhc-----CCCceEEecCCCCcchhhccC--CCCCCceeeeeechh-hccCChhHHHHHHHHHhcCCC
Q 035840 9 IATDTSPKQLEFAIK-----LPNIRYQLTPPTMSITELEQN--VATQSSVDLVTIAAA-LHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 9 ~gvD~S~~ml~~Ar~-----~~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~~~~-~hw~d~~~~~~e~~rvLk~pg 80 (213)
+-++..|+-++.-|. +.||....+.= ++. .++|+.||-|..-.- =+.-|...+.+.+.|+|| |+
T Consensus 128 ~IiE~hp~V~krmr~~gw~ek~nViil~g~W-------eDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLk-P~ 199 (271)
T KOG1709|consen 128 WIIEAHPDVLKRMRDWGWREKENVIILEGRW-------EDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLK-PE 199 (271)
T ss_pred EEEecCHHHHHHHHhcccccccceEEEecch-------HhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcC-CC
Confidence 456777777777665 24665555543 222 278899999996544 345588889999999999 99
Q ss_pred eEEEEEe
Q 035840 81 GVIAAWT 87 (213)
Q Consensus 81 G~l~~~~ 87 (213)
|.+-+++
T Consensus 200 gv~SyfN 206 (271)
T KOG1709|consen 200 GVFSYFN 206 (271)
T ss_pred ceEEEec
Confidence 9996554
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.40 E-value=0.55 Score=39.73 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCeEEEEeCCHHHHHHhhc------CCCceEE--ecCCCCcchhhccCCC--CCCceeeee-echhhccCChh---HHHH
Q 035840 5 YKNVIATDTSPKQLEFAIK------LPNIRYQ--LTPPTMSITELEQNVA--TQSSVDLVT-IAAALHWFDLP---QFYK 70 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~------~~~v~~~--~~~~~~~~~d~~~~~~--~~~sfDlV~-~~~~~hw~d~~---~~~~ 70 (213)
....+++|+|.++|+.+.+ +|.+++. +++-+ ..+.-++- ..+...+++ .+.++.-+++. .+++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~---~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~ 180 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD---DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLA 180 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH---HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHH
Confidence 3468999999999999876 2556653 33321 01111221 123345555 66788877554 5667
Q ss_pred HHHH-HhcCCCeEEEE
Q 035840 71 QVKW-VLKKPNGVIAA 85 (213)
Q Consensus 71 e~~r-vLk~pgG~l~~ 85 (213)
++++ .|+ |||.|++
T Consensus 181 ~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 181 GFLATALS-PSDSFLI 195 (319)
T ss_pred HHHHhhCC-CCCEEEE
Confidence 8888 999 9999865
No 215
>PRK04148 hypothetical protein; Provisional
Probab=92.31 E-value=0.17 Score=37.17 Aligned_cols=76 Identities=17% Similarity=0.033 Sum_probs=47.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCC-CCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
|+..+.+|+|+|+|+..++.|++. .+.++++|. -+.++. -..+|+|.+.- -++....-+.++-|+-
T Consensus 35 L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDl-------f~p~~~~y~~a~liysir-----pp~el~~~~~~la~~~ 101 (134)
T PRK04148 35 LKESGFDVIVIDINEKAVEKAKKL-GLNAFVDDL-------FNPNLEIYKNAKLIYSIR-----PPRDLQPFILELAKKI 101 (134)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHh-CCeEEECcC-------CCCCHHHHhcCCEEEEeC-----CCHHHHHHHHHHHHHc
Confidence 355678999999999999999876 457777766 222222 34588887643 3444555555555423
Q ss_pred CeEEEEEeCC
Q 035840 80 NGVIAAWTYT 89 (213)
Q Consensus 80 gG~l~~~~~~ 89 (213)
|.-+.+....
T Consensus 102 ~~~~~i~~l~ 111 (134)
T PRK04148 102 NVPLIIKPLS 111 (134)
T ss_pred CCCEEEEcCC
Confidence 4456665443
No 216
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=92.28 E-value=0.26 Score=37.75 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCeEEEEeCCHHHHHHhhcC---------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL---------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~---------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~r 74 (213)
..+|+.+|..+ -++..+.. +++.+..-+=.. +...-.+..++||+|+++.++..- ..+..+.-+.+
T Consensus 69 ~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~---~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ 144 (173)
T PF10294_consen 69 AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD---ELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKR 144 (173)
T ss_dssp -SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS----HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHH
T ss_pred CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC---cccccccccccCCEEEEecccchHHHHHHHHHHHHH
Confidence 56999999998 77766641 233333322100 000111345689999999999977 77888899999
Q ss_pred HhcCCCeEEEEE
Q 035840 75 VLKKPNGVIAAW 86 (213)
Q Consensus 75 vLk~pgG~l~~~ 86 (213)
+|+ |+|.+++.
T Consensus 145 ll~-~~~~vl~~ 155 (173)
T PF10294_consen 145 LLK-PNGKVLLA 155 (173)
T ss_dssp HBT-T-TTEEEE
T ss_pred HhC-CCCEEEEE
Confidence 999 89986544
No 217
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.01 E-value=0.44 Score=40.54 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=52.3
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
.+++|+++|.|++=++.|+++....+..+..+ ..++.. .+.||+|+..-. ...+....+.|| +||++
T Consensus 189 ~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~---~~~~~~---~~~~d~ii~tv~------~~~~~~~l~~l~-~~G~~ 255 (339)
T COG1064 189 MGAEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAV---KEIADAIIDTVG------PATLEPSLKALR-RGGTL 255 (339)
T ss_pred cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc---hhhHHh---HhhCcEEEECCC------hhhHHHHHHHHh-cCCEE
Confidence 46899999999999999999854444543311 111221 123888886543 578899999999 99999
Q ss_pred EEEeCC
Q 035840 84 AAWTYT 89 (213)
Q Consensus 84 ~~~~~~ 89 (213)
.+....
T Consensus 256 v~vG~~ 261 (339)
T COG1064 256 VLVGLP 261 (339)
T ss_pred EEECCC
Confidence 988776
No 218
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=91.75 E-value=0.42 Score=41.36 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccC-CCCCCceeeeeechhhccCChhHHHHHHHHHhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWFDLPQFYKQVKWVLK 77 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk 77 (213)
.++|+++|+|+..++.+++. .++.+..+++ ..+ .-....||+|..-= +. .+...+..+.+.++
T Consensus 69 a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da-------~~~l~~~~~~fDvIdlDP-fG--s~~~fld~al~~~~ 138 (374)
T TIGR00308 69 VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA-------ANVLRYRNRKFHVIDIDP-FG--TPAPFVDSAIQASA 138 (374)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH-------HHHHHHhCCCCCEEEeCC-CC--CcHHHHHHHHHhcc
Confidence 46899999999999999872 3455666665 322 11135699998632 32 44688999999999
Q ss_pred CCCeEEEEEeCC
Q 035840 78 KPNGVIAAWTYT 89 (213)
Q Consensus 78 ~pgG~l~~~~~~ 89 (213)
+||.|++.+.+
T Consensus 139 -~~glL~vTaTD 149 (374)
T TIGR00308 139 -ERGLLLVTATD 149 (374)
T ss_pred -cCCEEEEEecc
Confidence 89999887543
No 219
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.55 E-value=0.77 Score=43.07 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=49.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCC--CCceeeeeechhh--ccC---ChhHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVAT--QSSVDLVTIAAAL--HWF---DLPQFYKQ 71 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~--~~sfDlV~~~~~~--hw~---d~~~~~~e 71 (213)
.+|+|+|+++.|++.|++. ..+.+..+++ .+++.+ .+++|+|+++==+ ..- +....+.+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~-------~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV-------ADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh-------hhcccccccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 3799999999999999972 2356777766 555433 3579999976222 232 33345555
Q ss_pred HHHH---hcCCCeEEEEEeCC
Q 035840 72 VKWV---LKKPNGVIAAWTYT 89 (213)
Q Consensus 72 ~~rv---Lk~pgG~l~~~~~~ 89 (213)
+.+. .. ||+.+++.+..
T Consensus 330 lg~~lk~~~-~g~~~~llt~~ 349 (702)
T PRK11783 330 LGRRLKQQF-GGWNAALFSSS 349 (702)
T ss_pred HHHHHHHhC-CCCeEEEEeCC
Confidence 4444 45 78888766544
No 220
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.34 E-value=0.35 Score=41.89 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCceEEecCCCCcchhhccC--CCCCCceeeeeechhhccCCh---hHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035840 25 PNIRYQLTPPTMSITELEQN--VATQSSVDLVTIAAALHWFDL---PQFYKQVKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 25 ~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~~~~~hw~d~---~~~~~e~~rvLk~pgG~l~~~~~~~~ 91 (213)
.++++..++. ++. ..+++++|.++....+-||++ .+.++++.|+++ |||++++++...+
T Consensus 275 drv~i~t~si-------~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSI-------EEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccH-------HHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence 5566677655 332 257899999999999999955 466788999999 9999999988754
No 221
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.34 E-value=0.34 Score=37.92 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCceeeeeechhhccC--------ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 47 TQSSVDLVTIAAALHWF--------DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 47 ~~~sfDlV~~~~~~hw~--------d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
+++..|++.-.+.-|=+ ...++..++++.|| |||.+++..+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~ 168 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHR 168 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 44446666654444322 45688999999999 99999988775
No 222
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.03 E-value=0.74 Score=38.02 Aligned_cols=81 Identities=23% Similarity=0.154 Sum_probs=47.7
Q ss_pred cCCeEEEEeCCHHHHHHhhcC----CCceEE--ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHh-
Q 035840 4 IYKNVIATDTSPKQLEFAIKL----PNIRYQ--LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL- 76 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~----~~v~~~--~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL- 76 (213)
...+++++|.|+.|++.|+.. ++..-. .... .. +..++.. .|+|+++.++.=+.. ....++.+.|
T Consensus 57 ~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~~--~DLvi~s~~L~EL~~-~~r~~lv~~LW 128 (274)
T PF09243_consen 57 SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL---YR--DFLPFPP--DDLVIASYVLNELPS-AARAELVRSLW 128 (274)
T ss_pred CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh---hc--ccccCCC--CcEEEEehhhhcCCc-hHHHHHHHHHH
Confidence 356899999999999999873 111100 0000 00 1222333 399999999986622 3334444444
Q ss_pred -cCCCeEEEEEeCCCCCc
Q 035840 77 -KKPNGVIAAWTYTMPEI 93 (213)
Q Consensus 77 -k~pgG~l~~~~~~~~~~ 93 (213)
+ -.+.|++...+.+.-
T Consensus 129 ~~-~~~~LVlVEpGt~~G 145 (274)
T PF09243_consen 129 NK-TAPVLVLVEPGTPAG 145 (274)
T ss_pred Hh-ccCcEEEEcCCChHH
Confidence 3 344888888887643
No 223
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.80 E-value=0.45 Score=42.15 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=47.7
Q ss_pred CeEEEEeCCHHHHHHhhc------C-CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC---hhHHHHHHHHH
Q 035840 6 KNVIATDTSPKQLEFAIK------L-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD---LPQFYKQVKWV 75 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~------~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d---~~~~~~e~~rv 75 (213)
.+|+|||=|+..+...++ . ..|+++.++. +++..+. .+|+|+|=..=.+-+ .+..+....|.
T Consensus 215 ~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~-------r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rf 286 (448)
T PF05185_consen 215 VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM-------REVELPE-KVDIIVSELLGSFGDNELSPECLDAADRF 286 (448)
T ss_dssp SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T-------TTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGG
T ss_pred eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc-------cCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhh
Confidence 599999999987765533 1 5788888877 7776554 799999533222222 34678888999
Q ss_pred hcCCCeEEE
Q 035840 76 LKKPNGVIA 84 (213)
Q Consensus 76 Lk~pgG~l~ 84 (213)
|| |||.++
T Consensus 287 Lk-p~Gi~I 294 (448)
T PF05185_consen 287 LK-PDGIMI 294 (448)
T ss_dssp EE-EEEEEE
T ss_pred cC-CCCEEe
Confidence 99 999875
No 224
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.77 E-value=0.73 Score=35.89 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=40.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cC---ChhHHHHHHHHHh
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WF---DLPQFYKQVKWVL 76 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~---d~~~~~~e~~rvL 76 (213)
.+|+|+|+.+++++.|++. .++.|.++++ .+. ++.+|.|+++==|. |. |+ .++..+.++-
T Consensus 69 ~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv-------~~~---~~~~dtvimNPPFG~~~rhaDr-~Fl~~Ale~s 137 (198)
T COG2263 69 SRVLAVDIDPEALEIARANAEELLGDVEFVVADV-------SDF---RGKFDTVIMNPPFGSQRRHADR-PFLLKALEIS 137 (198)
T ss_pred cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch-------hhc---CCccceEEECCCCccccccCCH-HHHHHHHHhh
Confidence 5899999999999999984 3588888777 443 34477777654442 33 43 3444444444
Q ss_pred c
Q 035840 77 K 77 (213)
Q Consensus 77 k 77 (213)
+
T Consensus 138 ~ 138 (198)
T COG2263 138 D 138 (198)
T ss_pred h
Confidence 3
No 225
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.71 E-value=1.1 Score=38.98 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.6
Q ss_pred hhhccCCCCCCceeeeeechhhccC
Q 035840 39 TELEQNVATQSSVDLVTIAAALHWF 63 (213)
Q Consensus 39 ~d~~~~~~~~~sfDlV~~~~~~hw~ 63 (213)
++|..--||++|.+++++++|+||.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWL 175 (386)
T ss_pred ccccccccCCCceEEEEeeccceec
Confidence 4555555999999999999999999
No 226
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.18 E-value=2.1 Score=38.65 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=52.5
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCC-----------cchhhcc---CCCCC--CceeeeeechhhccCChhH
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTM-----------SITELEQ---NVATQ--SSVDLVTIAAALHWFDLPQ 67 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~-----------~~~d~~~---~~~~~--~sfDlV~~~~~~hw~d~~~ 67 (213)
.+++|+++|.+++-+++|++. +.++...+... +-.++.+ -.+.+ +.+|+|+.+....--..+.
T Consensus 187 lGA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~ 265 (509)
T PRK09424 187 LGAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPK 265 (509)
T ss_pred CCCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcc
Confidence 356899999999999999986 45544322100 0000000 00111 4599999887765443345
Q ss_pred H-HHHHHHHhcCCCeEEEEEeC
Q 035840 68 F-YKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 68 ~-~~e~~rvLk~pgG~l~~~~~ 88 (213)
+ .+++.+.+| |||++.....
T Consensus 266 lit~~~v~~mk-pGgvIVdvg~ 286 (509)
T PRK09424 266 LITAEMVASMK-PGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHhcC-CCCEEEEEcc
Confidence 5 599999999 9999886554
No 227
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=88.86 E-value=0.44 Score=39.27 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCCCcchhhccCCCCC---CceeeeeechhhccC-ChhHHHHHHHHHhcCCCeE
Q 035840 33 PPTMSITELEQNVATQ---SSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 33 ~~~~~~~d~~~~~~~~---~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~ 82 (213)
+..+..+||.+.-.++ ++||.|+.++=+-=. +.-.-+..+.++|| |||.
T Consensus 145 ~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG~ 197 (270)
T PF07942_consen 145 NLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGGY 197 (270)
T ss_pred ceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCCE
Confidence 3445556777775555 799999988333222 45567899999999 9993
No 228
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.21 E-value=2.5 Score=35.63 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=47.4
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
++|+++|.+++-++.|+++. +.......+ .++.+..-..+.+|+|+-+.. .+.++..+.++|+ +||++.+
T Consensus 195 ~~Vi~~~~~~~~~~~a~~lG-a~~vi~~~~---~~~~~~~~~~g~~D~vid~~G-----~~~~~~~~~~~l~-~~G~iv~ 264 (343)
T PRK09880 195 AEIVCADVSPRSLSLAREMG-ADKLVNPQN---DDLDHYKAEKGYFDVSFEVSG-----HPSSINTCLEVTR-AKGVMVQ 264 (343)
T ss_pred cEEEEEeCCHHHHHHHHHcC-CcEEecCCc---ccHHHHhccCCCCCEEEECCC-----CHHHHHHHHHHhh-cCCEEEE
Confidence 37999999999999999863 332221110 112222212235898885544 2457889999999 9999987
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 265 ~G~ 267 (343)
T PRK09880 265 VGM 267 (343)
T ss_pred Ecc
Confidence 764
No 229
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.20 E-value=0.8 Score=38.92 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeec-hhhccC--ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIA-AALHWF--DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~-~~~hw~--d~~~~~~e~~r 74 (213)
.++|++|+-| +|.++||++ ..+..+-|.. |+..+|. .+|+|++- ++..-+ -....+-.+.|
T Consensus 200 A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi-------EdieLPE-k~DviISEPMG~mL~NERMLEsYl~Ark 270 (517)
T KOG1500|consen 200 AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI-------EDIELPE-KVDVIISEPMGYMLVNERMLESYLHARK 270 (517)
T ss_pred cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc-------ccccCch-hccEEEeccchhhhhhHHHHHHHHHHHh
Confidence 4589999986 699999983 3455555666 7776655 49999842 222223 44567777889
Q ss_pred HhcCCCeEEE
Q 035840 75 VLKKPNGVIA 84 (213)
Q Consensus 75 vLk~pgG~l~ 84 (213)
.|| |.|...
T Consensus 271 ~l~-P~GkMf 279 (517)
T KOG1500|consen 271 WLK-PNGKMF 279 (517)
T ss_pred hcC-CCCccc
Confidence 999 999863
No 230
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.04 E-value=1.8 Score=35.61 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=51.9
Q ss_pred CCeEEEEeCCHHHHHHhhcC----CC--ceEEecCCCCcchhhcc--C-C-CCCCceeeeeechhhccC----ChhHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----PN--IRYQLTPPTMSITELEQ--N-V-ATQSSVDLVTIAAALHWF----DLPQFYK 70 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----~~--v~~~~~~~~~~~~d~~~--~-~-~~~~sfDlV~~~~~~hw~----d~~~~~~ 70 (213)
-++|+=||..|--++.+|.. ++ ..++.+|.-.-+.=++. . . +.-...=.|.....+||+ |+...+.
T Consensus 95 ~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~ 174 (267)
T PF04672_consen 95 DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVA 174 (267)
T ss_dssp T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHH
T ss_pred CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHH
Confidence 46899999999999999983 45 67888776322111110 0 0 222223356677888999 5788889
Q ss_pred HHHHHhcCCCeEEEEEeCC
Q 035840 71 QVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~ 89 (213)
.+...|. ||..|++.-..
T Consensus 175 ~l~d~la-pGS~L~ish~t 192 (267)
T PF04672_consen 175 RLRDALA-PGSYLAISHAT 192 (267)
T ss_dssp HHHCCS--TT-EEEEEEEB
T ss_pred HHHHhCC-CCceEEEEecC
Confidence 9999999 99999876554
No 231
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=87.96 E-value=2.4 Score=36.40 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=49.4
Q ss_pred CeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeee-----echhhc-------cC-C--
Q 035840 6 KNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVT-----IAAALH-------WF-D-- 64 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~-----~~~~~h-------w~-d-- 64 (213)
..|+++|.|+.=+...++. .++.....++.. +.+.....+.||.|. ++.+.. |- .
T Consensus 183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~----~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~ 258 (355)
T COG0144 183 AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR----LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPE 258 (355)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc----ccccccccCcCcEEEECCCCCCCcccccCccccccCCHH
Confidence 4579999999888777761 344555555410 111112233599998 233221 32 1
Q ss_pred --------hhHHHHHHHHHhcCCCeEEEEE-eCCCCCcC
Q 035840 65 --------LPQFYKQVKWVLKKPNGVIAAW-TYTMPEIN 94 (213)
Q Consensus 65 --------~~~~~~e~~rvLk~pgG~l~~~-~~~~~~~~ 94 (213)
....+..+.++|| |||.|... |...+.-+
T Consensus 259 ~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS~~~eEN 296 (355)
T COG0144 259 DIAELAKLQKEILAAALKLLK-PGGVLVYSTCSLTPEEN 296 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccCCchhcC
Confidence 1256788899999 99998644 33344333
No 232
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=87.90 E-value=0.79 Score=38.91 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC------C-CceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHH----HHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL------P-NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQF----YKQVK 73 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~-~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~----~~e~~ 73 (213)
..+|+|||-|.-+ +.|++. . -+++..|.+ |+..+|-.++|+|++=+.=+|.=.+.. +-.=-
T Consensus 83 A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv-------Edi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARd 154 (346)
T KOG1499|consen 83 ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV-------EDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARD 154 (346)
T ss_pred cceEEEEechHHH-HHHHHHHHhcCccceEEEeecce-------EEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhh
Confidence 3599999998765 888872 2 256667777 666677788999997665555533333 33335
Q ss_pred HHhcCCCeEEE
Q 035840 74 WVLKKPNGVIA 84 (213)
Q Consensus 74 rvLk~pgG~l~ 84 (213)
+.|+ |||.++
T Consensus 155 kwL~-~~G~i~ 164 (346)
T KOG1499|consen 155 KWLK-EGGLIY 164 (346)
T ss_pred hccC-CCceEc
Confidence 6799 999874
No 233
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.82 E-value=0.83 Score=39.42 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=43.6
Q ss_pred eEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeec--hhhccC---ChhHHHHHHHH
Q 035840 7 NVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIA--AALHWF---DLPQFYKQVKW 74 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~--~~~hw~---d~~~~~~e~~r 74 (213)
.++|+|+++.|++.|+.. ..|+|.++++ ..++-+-..+|+|+|+ +...-- ...+.+.++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~-------~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA-------TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch-------hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 577999999999999972 4578889888 5543332679999965 333332 24446666665
Q ss_pred Hhc
Q 035840 75 VLK 77 (213)
Q Consensus 75 vLk 77 (213)
.||
T Consensus 329 ~lk 331 (381)
T COG0116 329 TLK 331 (381)
T ss_pred HHH
Confidence 553
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=87.81 E-value=1.5 Score=37.40 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=52.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
+.+..+|+|||.++ |-..-+..++|....+++ +...| +.+.+|+|+|=.+- .|..+..-|.+.|. .|
T Consensus 230 ~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~------fr~~p-~~~~vDwvVcDmve---~P~rva~lm~~Wl~-~g- 296 (357)
T PRK11760 230 VRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADG------FKFRP-PRKNVDWLVCDMVE---KPARVAELMAQWLV-NG- 296 (357)
T ss_pred HHcCCEEEEEechh-cCHhhhCCCCEEEEeccC------cccCC-CCCCCCEEEEeccc---CHHHHHHHHHHHHh-cC-
Confidence 45677999999765 555555567888888766 23333 26679999988775 78899999999998 45
Q ss_pred E--EEEEeCC
Q 035840 82 V--IAAWTYT 89 (213)
Q Consensus 82 ~--l~~~~~~ 89 (213)
+ -+|++.-
T Consensus 297 ~cr~aIfnLK 306 (357)
T PRK11760 297 WCREAIFNLK 306 (357)
T ss_pred cccEEEEEEE
Confidence 4 3455543
No 235
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=87.71 E-value=0.65 Score=35.51 Aligned_cols=82 Identities=24% Similarity=0.240 Sum_probs=41.5
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCC--cchhhccC-CCCCCceeeeeechhhccC-----Ch-------hHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTM--SITELEQN-VATQSSVDLVTIAAALHWF-----DL-------PQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~--~~~d~~~~-~~~~~sfDlV~~~~~~hw~-----d~-------~~~~~ 70 (213)
.+|+|+|+.+. ...+++.+..++.-. ....+.+. +-....+|+|++=.+.... |. ..++.
T Consensus 49 ~~v~avDl~~~-----~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~ 123 (181)
T PF01728_consen 49 GRVVAVDLGPM-----DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLL 123 (181)
T ss_dssp EEEEEEESSST-----GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHH
T ss_pred ceEEEEecccc-----ccccceeeeecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHH
Confidence 79999999987 122333333332210 00122222 1123689999987744332 22 23444
Q ss_pred HHHHHhcCCCeEEEEEeCCCCCc
Q 035840 71 QVKWVLKKPNGVIAAWTYTMPEI 93 (213)
Q Consensus 71 e~~rvLk~pgG~l~~~~~~~~~~ 93 (213)
-+.+.|| |||.+++-.+..+..
T Consensus 124 ~a~~~L~-~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 124 LALELLK-PGGTFVIKVFKGPEI 145 (181)
T ss_dssp HHHHHHC-TTEEEEEEESSSTTS
T ss_pred HHHhhhc-CCCEEEEEeccCccH
Confidence 5567799 999988766654443
No 236
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.67 E-value=3.1 Score=35.84 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=50.0
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCC-CcchhhccCCCCCCceeeeeechhhcc----------------CChhHHH
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPT-MSITELEQNVATQSSVDLVTIAAALHW----------------FDLPQFY 69 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~-~~~~d~~~~~~~~~sfDlV~~~~~~hw----------------~d~~~~~ 69 (213)
+|+++|.++.+++.++++.++.......+ .....+.++ .....+|+|+-+..-+. -|....+
T Consensus 211 ~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
T cd08283 211 RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL-TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDAL 289 (386)
T ss_pred EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH-cCCCCCCEEEECCCCcccccccccccccccccccCchHHH
Confidence 69999999999999998644433322111 011111222 23346999986543211 1456789
Q ss_pred HHHHHHhcCCCeEEEEEe
Q 035840 70 KQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~~ 87 (213)
.++.+.|+ |||++.+..
T Consensus 290 ~~~~~~l~-~~G~iv~~g 306 (386)
T cd08283 290 REAIQAVR-KGGTVSIIG 306 (386)
T ss_pred HHHHHHhc-cCCEEEEEc
Confidence 99999999 999997664
No 237
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.61 E-value=3.7 Score=34.75 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEE--ecCCCCcch--hhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQ--LTPPTMSIT--ELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~--~~~~~~~~~--d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
.++|+.+|++++-|+.|++. +.+.. .......+. +.-+.......+|..+-+..++ ..+..+...|| +|
T Consensus 194 A~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~-----~~~~aai~a~r-~g 266 (354)
T KOG0024|consen 194 ASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAE-----VTIRAAIKATR-SG 266 (354)
T ss_pred CCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCch-----HHHHHHHHHhc-cC
Confidence 35899999999999999995 22212 111100000 1111124545689998877764 56667788999 89
Q ss_pred eEEEEEeCCCCCc
Q 035840 81 GVIAAWTYTMPEI 93 (213)
Q Consensus 81 G~l~~~~~~~~~~ 93 (213)
|++.+..++.+..
T Consensus 267 Gt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 267 GTVVLVGMGAEEI 279 (354)
T ss_pred CEEEEeccCCCcc
Confidence 9988888886543
No 238
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=84.43 E-value=0.87 Score=38.11 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=38.6
Q ss_pred CeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCC--Cceeeeeechhh--ccC-ChhHHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQ--SSVDLVTIAAAL--HWF-DLPQFYK 70 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~--~sfDlV~~~~~~--hw~-d~~~~~~ 70 (213)
++|+|+|.++.|++.|++. .+++++.++.. ++... +++ .++|.|++-... +-+ +....|.
T Consensus 45 g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~----~l~~~-l~~~~~~vDgIl~DLGvSs~Qld~~~RGFS 113 (296)
T PRK00050 45 GRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFS----NLKEV-LAEGLGKVDGILLDLGVSSPQLDDAERGFS 113 (296)
T ss_pred CEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHH----HHHHH-HHcCCCccCEEEECCCccccccCCCcCCcc
Confidence 6899999999999999974 35777777662 22211 122 279999955444 323 5555543
No 239
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=84.40 E-value=4.2 Score=31.53 Aligned_cols=77 Identities=8% Similarity=-0.014 Sum_probs=42.8
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHH--Hh
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKW--VL 76 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~r--vL 76 (213)
++|+++|.++..++.+++. .++++..+++.. -+..+.-....||+|+.-==+..-.....+..+.+ +|
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~---~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l 149 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR---ALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWIL 149 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH---HHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCC
Confidence 4899999999999999872 245667766610 01111111224788884222211123444444433 57
Q ss_pred cCCCeEEEEE
Q 035840 77 KKPNGVIAAW 86 (213)
Q Consensus 77 k~pgG~l~~~ 86 (213)
+ +||.+++-
T Consensus 150 ~-~~~iiv~E 158 (189)
T TIGR00095 150 E-DTVLIVVE 158 (189)
T ss_pred C-CCeEEEEE
Confidence 7 78776543
No 240
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=82.56 E-value=1.2 Score=33.83 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCceeeeeechhhccC------Ch------hHHHHHHHHHhcCCCeEEEEE
Q 035840 48 QSSVDLVTIAAALHWF------DL------PQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 48 ~~sfDlV~~~~~~hw~------d~------~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.++||.+.|..++..+ || .+++.++.++|| |||.|.+.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l~ 110 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFLG 110 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhc-cCCeEEEE
Confidence 5679999988888443 22 478899999999 99998754
No 241
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=82.39 E-value=2.7 Score=32.74 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=51.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCC-CCC-Cceeeeeechhhcc--CChhHHH
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNV-ATQ-SSVDLVTIAAALHW--FDLPQFY 69 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~-~~~-~sfDlV~~~~~~hw--~d~~~~~ 69 (213)
|++-.++|+.||.+..-+...++. .++.....++. ..++ ... +.||+|+.===+++ .+....+
T Consensus 62 lSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~------~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~ 135 (187)
T COG0742 62 LSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL------RALKQLGTREPFDLVFLDPPYAKGLLDKELAL 135 (187)
T ss_pred HhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH------HHHHhcCCCCcccEEEeCCCCccchhhHHHHH
Confidence 356678999999999999998872 45666677762 2211 222 24999995333332 2445555
Q ss_pred HH--HHHHhcCCCeEEEEEe
Q 035840 70 KQ--VKWVLKKPNGVIAAWT 87 (213)
Q Consensus 70 ~e--~~rvLk~pgG~l~~~~ 87 (213)
.. -..+|+ |||.+++-.
T Consensus 136 ~~~~~~~~L~-~~~~iv~E~ 154 (187)
T COG0742 136 LLLEENGWLK-PGALIVVEH 154 (187)
T ss_pred HHHHhcCCcC-CCcEEEEEe
Confidence 44 456699 898886543
No 242
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=82.22 E-value=7.1 Score=32.35 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCC-CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPT-MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~-~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.|+.+.+.+++.. +......-+ .....+ . ....+.+|+|+.+.. ....+.++.+.|+ +||++
T Consensus 189 G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~-~~~~~~~D~vid~~g-----~~~~~~~~~~~l~-~~G~~ 259 (338)
T cd08254 189 GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKK-A-AGLGGGFDVIFDFVG-----TQPTFEDAQKAVK-PGGRI 259 (338)
T ss_pred CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHH-H-HhcCCCceEEEECCC-----CHHHHHHHHHHhh-cCCEE
Confidence 457999999999999997652 333322211 000001 0 134567998875433 2468899999999 99999
Q ss_pred EEEeCC
Q 035840 84 AAWTYT 89 (213)
Q Consensus 84 ~~~~~~ 89 (213)
+..+..
T Consensus 260 v~~g~~ 265 (338)
T cd08254 260 VVVGLG 265 (338)
T ss_pred EEECCC
Confidence 876554
No 243
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=82.07 E-value=3.1 Score=33.12 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=48.4
Q ss_pred eEEEEeCCHHHHHHhhc------CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 7 NVIATDTSPKQLEFAIK------LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~------~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
+|+-+|....=+..-++ .+|++++.+.+ |+..-...-||+||+.... +......=+...+| +|
T Consensus 93 ~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra-------E~~~~~~~~~D~vtsRAva---~L~~l~e~~~pllk-~~ 161 (215)
T COG0357 93 KVTLLESLGKKIAFLREVKKELGLENVEIVHGRA-------EEFGQEKKQYDVVTSRAVA---SLNVLLELCLPLLK-VG 161 (215)
T ss_pred cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH-------hhcccccccCcEEEeehcc---chHHHHHHHHHhcc-cC
Confidence 48888888776666554 47899999999 5543211119999988765 56667777788888 88
Q ss_pred eEEE
Q 035840 81 GVIA 84 (213)
Q Consensus 81 G~l~ 84 (213)
|.+.
T Consensus 162 g~~~ 165 (215)
T COG0357 162 GGFL 165 (215)
T ss_pred Ccch
Confidence 8864
No 244
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.89 E-value=1.3 Score=33.24 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhh
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL 60 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~ 60 (213)
...|+|+|+.|+.++.+++... +|.+ .+++++.|+.++-+..+.||.++.+.-|
T Consensus 71 ~e~vlGfDIdpeALEIf~rNae-EfEv-qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 71 NESVLGFDIDPEALEIFTRNAE-EFEV-QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CceEEeeecCHHHHHHHhhchH-Hhhh-hhheeeeeccchhccCCeEeeEEecCCC
Confidence 3579999999999999997421 1111 1233444446665666888888877666
No 245
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=81.74 E-value=0.93 Score=35.11 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=48.8
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCC-hhHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFD-LPQFYKQVK 73 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d-~~~~~~e~~ 73 (213)
++-.++|+.||.|+..+...++. .++.....++. ..+....-....||+|++-==...-. ..+++..+.
T Consensus 62 SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~---~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 62 SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF---KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH---HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH---HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 34567999999999999998872 23555565541 11122212467899999543222222 367777776
Q ss_pred --HHhcCCCeEEEEEe
Q 035840 74 --WVLKKPNGVIAAWT 87 (213)
Q Consensus 74 --rvLk~pgG~l~~~~ 87 (213)
.+|+ ++|.+++-.
T Consensus 139 ~~~~l~-~~~~ii~E~ 153 (183)
T PF03602_consen 139 ENNLLN-EDGLIIIEH 153 (183)
T ss_dssp HTTSEE-EEEEEEEEE
T ss_pred HCCCCC-CCEEEEEEe
Confidence 6888 888875543
No 246
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=80.32 E-value=3.2 Score=35.15 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC----C----CceEEe-cCCCCcchhh-ccCCCCCCceeeeeechhhc
Q 035840 5 YKNVIATDTSPKQLEFAIKL----P----NIRYQL-TPPTMSITEL-EQNVATQSSVDLVTIAAALH 61 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----~----~v~~~~-~~~~~~~~d~-~~~~~~~~sfDlV~~~~~~h 61 (213)
..+++|+|+++.+++.|++. + .+++.. .+. .++ +....+++.||+|+|+==+|
T Consensus 138 ~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~----~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 138 GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS----KAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch----hhhhhcccccCCceEEEEeCCCCc
Confidence 45899999999999999972 2 234432 222 111 11112466899999875554
No 247
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.33 E-value=11 Score=31.56 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.|++-++.|++.. +..... . .+ ...+.+|+++.+.+. ...+.+..++|+ +||++.
T Consensus 189 G~~vi~~~~~~~~~~~a~~~G-a~~vi~-~-------~~--~~~~~~d~~i~~~~~-----~~~~~~~~~~l~-~~G~~v 251 (329)
T TIGR02822 189 GATVHVMTRGAAARRLALALG-AASAGG-A-------YD--TPPEPLDAAILFAPA-----GGLVPPALEALD-RGGVLA 251 (329)
T ss_pred CCeEEEEeCChHHHHHHHHhC-Cceecc-c-------cc--cCcccceEEEECCCc-----HHHHHHHHHhhC-CCcEEE
Confidence 457999999999999999862 222211 1 11 112347876644432 357899999999 999998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
+...
T Consensus 252 ~~G~ 255 (329)
T TIGR02822 252 VAGI 255 (329)
T ss_pred EEec
Confidence 7765
No 248
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.56 E-value=9 Score=30.28 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccC--CCCCCceeeeeech----hhccC-Chh-------HHHHHH
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQN--VATQSSVDLVTIAA----ALHWF-DLP-------QFYKQV 72 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~~~----~~hw~-d~~-------~~~~e~ 72 (213)
+|+|+|+-|-- -.++|.+.+++... ...++.+ -++...+|+|+|=. +-+|- |+. .++.-+
T Consensus 72 ~ivavDi~p~~-----~~~~V~~iq~d~~~-~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a 145 (205)
T COG0293 72 KIVAVDILPMK-----PIPGVIFLQGDITD-EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFA 145 (205)
T ss_pred cEEEEECcccc-----cCCCceEEeeeccC-ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHH
Confidence 48999986531 23678888876621 0111111 14555589999433 33555 654 455566
Q ss_pred HHHhcCCCeEEEEEeCC
Q 035840 73 KWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 73 ~rvLk~pgG~l~~~~~~ 89 (213)
..+|+ |||.+++-.+.
T Consensus 146 ~~vL~-~~G~fv~K~fq 161 (205)
T COG0293 146 LEVLK-PGGSFVAKVFQ 161 (205)
T ss_pred HHeeC-CCCeEEEEEEe
Confidence 77899 99998765443
No 249
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=78.52 E-value=2.8 Score=34.35 Aligned_cols=51 Identities=12% Similarity=-0.087 Sum_probs=38.3
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC----CCceEEecCCCCcchhhccCCCCCC-ceeeeeech
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL----PNIRYQLTPPTMSITELEQNVATQS-SVDLVTIAA 58 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~----~~v~~~~~~~~~~~~d~~~~~~~~~-sfDlV~~~~ 58 (213)
|++..++|+|+|+.+.|++..++. .+++.+.+|+ -..+++.. .++.|+++-
T Consensus 48 Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da-------Lk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 48 LLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA-------LKFDFPSLAQPYKVVANL 103 (259)
T ss_pred HHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch-------hcCcchhhcCCCEEEEcC
Confidence 467789999999999999998874 5677788777 55555543 467777553
No 250
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.27 E-value=2.2 Score=32.57 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=50.2
Q ss_pred CeEEEEeCCHHHHHHhhcC--CCceEEecCCCCcchhh--ccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCC
Q 035840 6 KNVIATDTSPKQLEFAIKL--PNIRYQLTPPTMSITEL--EQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~--~~v~~~~~~~~~~~~d~--~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pg 80 (213)
+.|.-+|=++..++.-++. .|-.+....+-.+.-+. .......++||+|.++.|+-+- -+....+-+.+.|+ |.
T Consensus 55 ~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~ 133 (201)
T KOG3201|consen 55 SSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PS 133 (201)
T ss_pred ceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cc
Confidence 4677788888877776652 12101100000000000 1112456789999999999666 55667789999999 99
Q ss_pred eEEEEEeCCC
Q 035840 81 GVIAAWTYTM 90 (213)
Q Consensus 81 G~l~~~~~~~ 90 (213)
|.-.++....
T Consensus 134 g~Al~fsPRR 143 (201)
T KOG3201|consen 134 GRALLFSPRR 143 (201)
T ss_pred cceeEecCcc
Confidence 9955555443
No 251
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.20 E-value=10 Score=32.17 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=46.8
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|+++|.++..++.+++..-..+.....+.....+.+. .....+|+|+-+.+- +.++.+..+.|+ +||++.+.
T Consensus 203 ~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vid~~g~-----~~~~~~~~~~~~-~~G~iv~~ 275 (358)
T TIGR03451 203 KIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVIDAVGR-----PETYKQAFYARD-LAGTVVLV 275 (358)
T ss_pred eEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEEECCCC-----HHHHHHHHHHhc-cCCEEEEE
Confidence 59999999999999987632122221111000111121 123458988854432 357888899999 99999877
Q ss_pred eCC
Q 035840 87 TYT 89 (213)
Q Consensus 87 ~~~ 89 (213)
...
T Consensus 276 G~~ 278 (358)
T TIGR03451 276 GVP 278 (358)
T ss_pred CCC
Confidence 653
No 252
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=77.80 E-value=8.8 Score=31.94 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=44.2
Q ss_pred CCeEEEEeCCHHHHHHhhc----C----CCceEEecCCCCcchhhccCCCC-CCceeeeeechhh--c-cCCh-------
Q 035840 5 YKNVIATDTSPKQLEFAIK----L----PNIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAAL--H-WFDL------- 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~----~----~~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~--h-w~d~------- 65 (213)
-.+++|+|+++.++..|+. + .+.....++. +...... ...||+|+++==+ . |.+.
T Consensus 77 ~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~------l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~ 150 (311)
T PF02384_consen 77 EINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS------LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDER 150 (311)
T ss_dssp CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T------TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred cceeEeecCcHHHHHHHHhhhhhhcccccccccccccc------ccccccccccccccccCCCCcccccccccccccccc
Confidence 3479999999999999875 1 2223445543 2222222 5789999954322 2 3211
Q ss_pred ------------hHHHHHHHHHhcCCCeEEEEE
Q 035840 66 ------------PQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 66 ------------~~~~~e~~rvLk~pgG~l~~~ 86 (213)
-.++..+.+.|| +||++++.
T Consensus 151 ~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~I 182 (311)
T PF02384_consen 151 FKKYFPPKSNAEYAFIEHALSLLK-PGGRAAII 182 (311)
T ss_dssp CTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred ccccCCCccchhhhhHHHHHhhcc-cccceeEE
Confidence 146788999999 89998754
No 253
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=76.12 E-value=5.8 Score=31.09 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=52.2
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhc-cC--ChhHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH-WF--DLPQFYKQV 72 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h-w~--d~~~~~~e~ 72 (213)
|.+..+|++++..|.-...|.+. .|++.+.+|| .+..| ...|.|+|-+.=- -+ ..-.++..+
T Consensus 51 a~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA-------~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~v 121 (252)
T COG4076 51 AHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA-------RDYDF--ENADVVICEMLDTALIEEKQVPVINAV 121 (252)
T ss_pred HhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc-------ccccc--cccceeHHHHhhHHhhcccccHHHHHH
Confidence 44567999999999999999873 4778888888 66556 3478877543221 11 445677778
Q ss_pred HHHhcCCCeEEE
Q 035840 73 KWVLKKPNGVIA 84 (213)
Q Consensus 73 ~rvLk~pgG~l~ 84 (213)
..-|| -.|++.
T Consensus 122 leFLr-~d~tii 132 (252)
T COG4076 122 LEFLR-YDPTII 132 (252)
T ss_pred HHHhh-cCCccc
Confidence 88888 688875
No 254
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=74.66 E-value=11 Score=29.79 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=40.4
Q ss_pred CeEEEEeCCHHHHHH-hhcC----CCceEEecCCCCcchhhccCC-C-CCCceeeeeechhhc-cCChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEF-AIKL----PNIRYQLTPPTMSITELEQNV-A-TQSSVDLVTIAAALH-WFDLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~-Ar~~----~~v~~~~~~~~~~~~d~~~~~-~-~~~sfDlV~~~~~~h-w~d~~~~~~e~~rvLk 77 (213)
++|+|+|+...-... |.+. +.|++.+|+....+. ++... . .+.... +++-.+-| +.+..+.|.....+++
T Consensus 61 ~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~-~~~v~~~~~~~~~v-lVilDs~H~~~hvl~eL~~y~plv~ 138 (206)
T PF04989_consen 61 GKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEI-VDQVRELASPPHPV-LVILDSSHTHEHVLAELEAYAPLVS 138 (206)
T ss_dssp -EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHH-HHTSGSS----SSE-EEEESS----SSHHHHHHHHHHT--
T ss_pred ceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHH-HHHHHHhhccCCce-EEEECCCccHHHHHHHHHHhCccCC
Confidence 699999995444433 2222 689999987632211 11111 1 122223 34555556 4488899999999999
Q ss_pred CCCeEEEEEe
Q 035840 78 KPNGVIAAWT 87 (213)
Q Consensus 78 ~pgG~l~~~~ 87 (213)
||+.+++.+
T Consensus 139 -~G~Y~IVeD 147 (206)
T PF04989_consen 139 -PGSYLIVED 147 (206)
T ss_dssp -TT-EEEETS
T ss_pred -CCCEEEEEe
Confidence 999886643
No 255
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=73.85 E-value=18 Score=30.06 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=45.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|++++.|+.+.+.+++..-..+.....+ ++..+....+.+|+|+.+... ...+.++.+.|+ ++|+++..
T Consensus 192 ~v~~~~~s~~~~~~~~~~g~~~vi~~~~~----~~~~~~~~~~~vd~vld~~g~-----~~~~~~~~~~L~-~~G~~v~~ 261 (339)
T cd08232 192 EIVATDLADAPLAVARAMGADETVNLARD----PLAAYAADKGDFDVVFEASGA-----PAALASALRVVR-PGGTVVQV 261 (339)
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEcCCch----hhhhhhccCCCccEEEECCCC-----HHHHHHHHHHHh-cCCEEEEE
Confidence 78999999999998876532122211110 112222223458999865442 356789999999 99999865
Q ss_pred eC
Q 035840 87 TY 88 (213)
Q Consensus 87 ~~ 88 (213)
..
T Consensus 262 g~ 263 (339)
T cd08232 262 GM 263 (339)
T ss_pred ec
Confidence 43
No 256
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=72.84 E-value=2.3 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=15.4
Q ss_pred hhccCCCCCCceeeeeechhhccC
Q 035840 40 ELEQNVATQSSVDLVTIAAALHWF 63 (213)
Q Consensus 40 d~~~~~~~~~sfDlV~~~~~~hw~ 63 (213)
+|..--+|++|.|+++++.|+||.
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-
T ss_pred hhhhccCCCCceEEEEEechhhhc
Confidence 445555999999999999999999
No 257
>KOG2730 consensus Methylase [General function prediction only]
Probab=72.47 E-value=3.9 Score=32.80 Aligned_cols=33 Identities=24% Similarity=0.130 Sum_probs=25.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCC
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPP 34 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~ 34 (213)
|-++-.|+++|++|.-|..||+. +.|+|.+|+.
T Consensus 113 a~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 113 ALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred HHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence 45678999999999999999973 3556666654
No 258
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=71.89 E-value=12 Score=31.12 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=44.8
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
..|++++-++...+.+++.....+....-+.....+... .+++.+|+|+-+..- ...+.++.+.|+ ++|++..
T Consensus 193 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~~g~-----~~~~~~~~~~l~-~~G~~v~ 265 (347)
T cd05278 193 ARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEAVGF-----EETFEQAVKVVR-PGGTIAN 265 (347)
T ss_pred CEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEccCC-----HHHHHHHHHHhh-cCCEEEE
Confidence 378888888888888776532122221111011111222 233569998864332 257899999999 9999876
Q ss_pred Ee
Q 035840 86 WT 87 (213)
Q Consensus 86 ~~ 87 (213)
.+
T Consensus 266 ~g 267 (347)
T cd05278 266 VG 267 (347)
T ss_pred Ec
Confidence 54
No 259
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.74 E-value=19 Score=28.49 Aligned_cols=78 Identities=27% Similarity=0.194 Sum_probs=46.3
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
...+|++++.++...+.++..................+. ....+.+|+|+.+.+- ......+.+.|+ ++|++
T Consensus 157 ~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~~~~~-----~~~~~~~~~~l~-~~G~~ 228 (271)
T cd05188 157 AGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR--LTGGGGADVVIDAVGG-----PETLAQALRLLR-PGGRI 228 (271)
T ss_pred cCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH--HhcCCCCCEEEECCCC-----HHHHHHHHHhcc-cCCEE
Confidence 356899999999988888764211111111100000111 1234569999865432 256788899999 89999
Q ss_pred EEEeCC
Q 035840 84 AAWTYT 89 (213)
Q Consensus 84 ~~~~~~ 89 (213)
+.....
T Consensus 229 v~~~~~ 234 (271)
T cd05188 229 VVVGGT 234 (271)
T ss_pred EEEccC
Confidence 866543
No 260
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.68 E-value=15 Score=31.23 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|+++|.++.-++.|++..-..+.....+.....+.+. .++.+|+|+-+.. ....+..+.+.|+ +||++++.
T Consensus 218 ~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~--~~~g~d~vid~~G-----~~~~~~~~~~~l~-~~G~iv~~ 289 (371)
T cd08281 218 QVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL--TGGGVDYAFEMAG-----SVPALETAYEITR-RGGTTVTA 289 (371)
T ss_pred cEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH--hCCCCCEEEECCC-----ChHHHHHHHHHHh-cCCEEEEE
Confidence 69999999999999987632112221111000111111 1225898885433 2467888999999 99999876
Q ss_pred eCC
Q 035840 87 TYT 89 (213)
Q Consensus 87 ~~~ 89 (213)
...
T Consensus 290 G~~ 292 (371)
T cd08281 290 GLP 292 (371)
T ss_pred ccC
Confidence 543
No 261
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.58 E-value=8.1 Score=30.49 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCc-eeeee-echhhccCChhHHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSS-VDLVT-IAAALHWFDLPQFYKQVKWV 75 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~s-fDlV~-~~~~~hw~d~~~~~~e~~rv 75 (213)
..+|+++|+++.-++.|++. ..+++..+++ ++. ++++. .|.|+ ++++-.= ....+.+....
T Consensus 21 ~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG------L~~--l~~~e~~d~ivIAGMGG~l--I~~ILe~~~~~ 90 (205)
T PF04816_consen 21 APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG------LEV--LKPGEDVDTIVIAGMGGEL--IIEILEAGPEK 90 (205)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG------GGG----GGG---EEEEEEE-HHH--HHHHHHHTGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc------ccc--cCCCCCCCEEEEecCCHHH--HHHHHHhhHHH
Confidence 45899999999999999972 4588888887 343 34433 77777 4444321 22444444445
Q ss_pred hcCCCeEEEEEeCC
Q 035840 76 LKKPNGVIAAWTYT 89 (213)
Q Consensus 76 Lk~pgG~l~~~~~~ 89 (213)
++ ....|.+....
T Consensus 91 ~~-~~~~lILqP~~ 103 (205)
T PF04816_consen 91 LS-SAKRLILQPNT 103 (205)
T ss_dssp GT-T--EEEEEESS
T ss_pred hc-cCCeEEEeCCC
Confidence 55 44466554443
No 262
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=69.54 E-value=6.7 Score=30.95 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=38.9
Q ss_pred cCCeEEEEeCCHHHHHHhhcC---------------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL---------------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQ 67 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~---------------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~ 67 (213)
.+++++|||+.+...+.|... ..+++. .++++..++....+ ...|+|+++... |= +...
T Consensus 65 ~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~--~gdfl~~~~~~~~~--s~AdvVf~Nn~~-F~~~l~~ 139 (205)
T PF08123_consen 65 GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI--HGDFLDPDFVKDIW--SDADVVFVNNTC-FDPDLNL 139 (205)
T ss_dssp --SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE--CS-TTTHHHHHHHG--HC-SEEEE--TT-T-HHHHH
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee--ccCccccHhHhhhh--cCCCEEEEeccc-cCHHHHH
Confidence 467899999999988877641 223333 44344433322212 236888866432 22 4456
Q ss_pred HHHHHHHHhcCCCeEEE
Q 035840 68 FYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 68 ~~~e~~rvLk~pgG~l~ 84 (213)
.+.+...-|| ||-+++
T Consensus 140 ~L~~~~~~lk-~G~~II 155 (205)
T PF08123_consen 140 ALAELLLELK-PGARII 155 (205)
T ss_dssp HHHHHHTTS--TT-EEE
T ss_pred HHHHHHhcCC-CCCEEE
Confidence 6677778889 787764
No 263
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=69.28 E-value=28 Score=28.81 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=45.4
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.|+.-.+.+++.....+.....+.....+.+. .+...+|+|+-+.+ ........+.|+ +||+++
T Consensus 168 G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~-~~~~~~d~vid~~g------~~~~~~~~~~l~-~~G~~v 239 (324)
T cd08291 168 GIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKEL-IAKLNATIFFDAVG------GGLTGQILLAMP-YGSTLY 239 (324)
T ss_pred CCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHH-hCCCCCcEEEECCC------cHHHHHHHHhhC-CCCEEE
Confidence 4589999999999999987632222222211111111222 23345899885443 233466788899 899997
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 240 ~~g~ 243 (324)
T cd08291 240 VYGY 243 (324)
T ss_pred EEEe
Confidence 6653
No 264
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=68.76 E-value=23 Score=29.57 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=43.8
Q ss_pred eEEEEeCCHHHHHHhhc-CCCceEE-ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 7 NVIATDTSPKQLEFAIK-LPNIRYQ-LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~-~~~v~~~-~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
+|++++.|++..+.+++ . +++.. ...-+.....+.++ .++.+|+|+-+.+- ..+.++.+.|+ +||+++
T Consensus 182 ~Vi~~~~s~~~~~~~~~~l-Ga~~vi~~~~~~~~~~i~~~--~~~gvd~vid~~g~------~~~~~~~~~l~-~~G~iv 251 (345)
T cd08293 182 RVVGICGSDEKCQLLKSEL-GFDAAINYKTDNVAERLREL--CPEGVDVYFDNVGG------EISDTVISQMN-ENSHII 251 (345)
T ss_pred EEEEEcCCHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHH--CCCCceEEEECCCc------HHHHHHHHHhc-cCCEEE
Confidence 79999999999888875 4 33322 21111111112222 23569999854431 24578899999 999998
Q ss_pred EEe
Q 035840 85 AWT 87 (213)
Q Consensus 85 ~~~ 87 (213)
...
T Consensus 252 ~~G 254 (345)
T cd08293 252 LCG 254 (345)
T ss_pred EEe
Confidence 654
No 265
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=68.69 E-value=25 Score=30.45 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=49.8
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecC-CCCcchhhccCCCCCCceeeeeechhhcc-------C--ChhHHHHHHHHHh
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTP-PTMSITELEQNVATQSSVDLVTIAAALHW-------F--DLPQFYKQVKWVL 76 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~-~~~~~~d~~~~~~~~~sfDlV~~~~~~hw-------~--d~~~~~~e~~rvL 76 (213)
.|+.+|.+++-++.|++.. +...... .......+.+. .....+|+|+-+.+... + +...++.++.+++
T Consensus 212 ~vi~~d~~~~r~~~a~~~G-a~~v~~~~~~~~~~~v~~~-~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (393)
T TIGR02819 212 VVIVGDLNPARLAQARSFG-CETVDLSKDATLPEQIEQI-LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVT 289 (393)
T ss_pred eEEEeCCCHHHHHHHHHcC-CeEEecCCcccHHHHHHHH-cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHh
Confidence 4677899999999999863 3322211 10111112222 22345899986665432 1 3456899999999
Q ss_pred cCCCeEEEEEeCC
Q 035840 77 KKPNGVIAAWTYT 89 (213)
Q Consensus 77 k~pgG~l~~~~~~ 89 (213)
+ +||++.+....
T Consensus 290 ~-~~G~i~~~G~~ 301 (393)
T TIGR02819 290 R-VGGAIGIPGLY 301 (393)
T ss_pred h-CCCEEEEeeec
Confidence 9 99999877653
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=68.23 E-value=4.4 Score=31.57 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 65 LPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 65 ~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
....+.++.|+|| |||.+++....
T Consensus 35 ~~~~~~~~~rvLk-~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLK-PGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEE-C
T ss_pred HHHHHHHHHhhcC-CCeeEEEEecc
Confidence 5788999999999 99999766444
No 267
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.90 E-value=24 Score=29.44 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCe-EEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKN-VIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~-V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..+ |+++|.+++.++.+++.. +.... ...+. ...+.+. .....+|+|+-+.. ....+.++.+.|+ +||+
T Consensus 187 G~~~vi~~~~~~~~~~~~~~~g-a~~~i~~~~~~-~~~~~~~-~~~~~~d~vid~~g-----~~~~~~~~~~~l~-~~G~ 257 (339)
T cd08239 187 GAEDVIGVDPSPERLELAKALG-ADFVINSGQDD-VQEIREL-TSGAGADVAIECSG-----NTAARRLALEAVR-PWGR 257 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHhC-CCEEEcCCcch-HHHHHHH-hCCCCCCEEEECCC-----CHHHHHHHHHHhh-cCCE
Confidence 345 999999999999998763 22222 11110 0111121 12346898885433 2346678899999 9999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.+...
T Consensus 258 ~v~~g~ 263 (339)
T cd08239 258 LVLVGE 263 (339)
T ss_pred EEEEcC
Confidence 987654
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=67.07 E-value=17 Score=30.61 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC----------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-----ChhHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL----------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-----DLPQFY 69 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~----------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-----d~~~~~ 69 (213)
+.++.-+|+..+.++..+++ +.+....||+ ..|-+. ...+.||+|+.-.+=.-. =....+
T Consensus 145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG----~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~ 219 (337)
T KOG1562|consen 145 VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG----FLFLED-LKENPFDVIITDSSDPVGPACALFQKPYF 219 (337)
T ss_pred ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH----HHHHHH-hccCCceEEEEecCCccchHHHHHHHHHH
Confidence 66888999999999988873 5667777776 233222 457889999843222111 124566
Q ss_pred HHHHHHhcCCCeEEEEEe
Q 035840 70 KQVKWVLKKPNGVIAAWT 87 (213)
Q Consensus 70 ~e~~rvLk~pgG~l~~~~ 87 (213)
.-+.+.|| |||.+++..
T Consensus 220 ~~v~~aLk-~dgv~~~q~ 236 (337)
T KOG1562|consen 220 GLVLDALK-GDGVVCTQG 236 (337)
T ss_pred HHHHHhhC-CCcEEEEec
Confidence 78999999 999998765
No 269
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=66.70 E-value=12 Score=31.04 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=32.1
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEE----ecCCCCcchhhccCCCCCCceeeeeec
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQ----LTPPTMSITELEQNVATQSSVDLVTIA 57 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~----~~~~~~~~~d~~~~~~~~~sfDlV~~~ 57 (213)
.+|+|+|.|+..+..|.+. ..+..+ .++. ++..+..++..|+++++
T Consensus 173 ~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~------~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 173 CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA------SDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc------ccccccccCceeEEecC
Confidence 5899999999999999872 233333 2222 24445677889999975
No 270
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.61 E-value=20 Score=30.14 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=44.1
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.+|+++|.+++-++.|++. +..+.. +++. .+..+|+|+=+..-. ..+.++.+..++|+ +||++.+
T Consensus 190 ~~vi~~~~~~~k~~~a~~~-~~~~~~----------~~~~-~~~g~d~viD~~G~~--~~~~~~~~~~~~l~-~~G~iv~ 254 (341)
T cd08237 190 SKLVVFGKHQEKLDLFSFA-DETYLI----------DDIP-EDLAVDHAFECVGGR--GSQSAINQIIDYIR-PQGTIGL 254 (341)
T ss_pred CcEEEEeCcHhHHHHHhhc-Cceeeh----------hhhh-hccCCcEEEECCCCC--ccHHHHHHHHHhCc-CCcEEEE
Confidence 5899999999999988752 222111 1110 112488887443310 13568899999999 9999987
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 255 ~G~ 257 (341)
T cd08237 255 MGV 257 (341)
T ss_pred Eee
Confidence 664
No 271
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=65.17 E-value=22 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=16.3
Q ss_pred CeEEEEeCCHHHHHHhhc
Q 035840 6 KNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~ 23 (213)
..++|+|+++..+..|+.
T Consensus 64 ~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKK 81 (524)
T ss_pred eeeeeechhHHHHHHHHH
Confidence 478999999999999986
No 272
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=65.08 E-value=32 Score=29.05 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCeEEEEeC---CHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 5 YKNVIATDT---SPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 5 ~~~V~gvD~---S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
..+|++++. ++.-++.|++. ++.+.....+ ++++. ...+.+|+|+-+.. ....+.++.++|+ +||
T Consensus 196 G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~----~~~~~-~~~~~~d~vid~~g-----~~~~~~~~~~~l~-~~G 263 (355)
T cd08230 196 GFEVYVLNRRDPPDPKADIVEEL-GATYVNSSKT----PVAEV-KLVGEFDLIIEATG-----VPPLAFEALPALA-PNG 263 (355)
T ss_pred CCeEEEEecCCCCHHHHHHHHHc-CCEEecCCcc----chhhh-hhcCCCCEEEECcC-----CHHHHHHHHHHcc-CCc
Confidence 348999986 78888888875 3344322111 11111 11245898886554 2347889999999 999
Q ss_pred EEEEEeCC
Q 035840 82 VIAAWTYT 89 (213)
Q Consensus 82 ~l~~~~~~ 89 (213)
++.+....
T Consensus 264 ~~v~~G~~ 271 (355)
T cd08230 264 VVILFGVP 271 (355)
T ss_pred EEEEEecC
Confidence 99876543
No 273
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=64.92 E-value=7.8 Score=32.15 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=32.5
Q ss_pred ccCCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeeech
Q 035840 3 KIYKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAA 58 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~ 58 (213)
...++|+|+|..|.|++.-.++ ...+...||. -..++ .-||.++++.
T Consensus 78 e~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~-------lK~d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 78 EAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF-------LKTDL--PRFDGCVSNL 131 (315)
T ss_pred HhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc-------ccCCC--cccceeeccC
Confidence 4678999999999999998763 2344455544 44333 3489988743
No 274
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=64.73 E-value=7.7 Score=32.63 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=25.2
Q ss_pred echhhc-cC-----ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 56 IAAALH-WF-----DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 56 ~~~~~h-w~-----d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
..|++. ++ ....++..+..+|+ |||+|++.++.
T Consensus 204 ~FQALRI~VN~EL~~L~~~L~~~~~~L~-~gGrl~VISfH 242 (305)
T TIGR00006 204 VFQAIRIYVNDELEELEEALQFAPNLLA-PGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 556664 33 23578888999999 99999988876
No 275
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=64.28 E-value=8.7 Score=31.86 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccC-C-CCCCceeeeee---chhhc-cC-Ch------
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQN-V-ATQSSVDLVTI---AAALH-WF-DL------ 65 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~-~-~~~~sfDlV~~---~~~~h-w~-d~------ 65 (213)
-++|+++|+++.-+...+.. .++.....++ ... + .....||.|.. +.+.. +- ++
T Consensus 110 ~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~-------~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~ 182 (283)
T PF01189_consen 110 KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA-------RKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRR 182 (283)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH-------HHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE
T ss_pred hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc-------ccccccccccccchhhcCCCccchhhhhhccchhhcc
Confidence 36899999999998887752 4555554443 222 1 22335999982 22221 11 21
Q ss_pred ------------hHHHHHHHHHh----cCCCeEEEEEe
Q 035840 66 ------------PQFYKQVKWVL----KKPNGVIAAWT 87 (213)
Q Consensus 66 ------------~~~~~e~~rvL----k~pgG~l~~~~ 87 (213)
.+.+..+.+.+ | |||+++..+
T Consensus 183 ~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsT 219 (283)
T PF01189_consen 183 SPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYST 219 (283)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEe
Confidence 25678888899 9 999987543
No 276
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=64.00 E-value=30 Score=30.91 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=49.3
Q ss_pred CCeEEEEeCCHHHHHHhhcC--C----------CceEEecCCCCcchhhccCCCCC-CceeeeeechhhccC----ChhH
Q 035840 5 YKNVIATDTSPKQLEFAIKL--P----------NIRYQLTPPTMSITELEQNVATQ-SSVDLVTIAAALHWF----DLPQ 67 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~--~----------~v~~~~~~~~~~~~d~~~~~~~~-~sfDlV~~~~~~hw~----d~~~ 67 (213)
-..++.||.|..|....... . ++.|.. .-+|.+. +.+|+|+++..+|.. .+..
T Consensus 226 ~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r----------~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~ 295 (491)
T KOG2539|consen 226 KREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR----------QRLPIDIKNGYDLVICAHKLHELGSKFSRLD 295 (491)
T ss_pred cceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc----------ccCCCCcccceeeEEeeeeeeccCCchhhhh
Confidence 45789999999999997751 1 112222 2234433 449999999999877 3334
Q ss_pred HHHHHH-HHhcCCCeEEEEEeCCCC
Q 035840 68 FYKQVK-WVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 68 ~~~e~~-rvLk~pgG~l~~~~~~~~ 91 (213)
...+.. +..+ +||.+.+..-+.+
T Consensus 296 v~~s~~r~~~r-~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 296 VPESLWRKTDR-SGYFLVIIEKGTT 319 (491)
T ss_pred hhHHHHHhccC-CCceEEEEecCCc
Confidence 444444 4467 8999887766544
No 277
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=63.63 E-value=22 Score=28.89 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=37.8
Q ss_pred cCCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCC---Cceeeeeec--hhhccCChhHHHHHHH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQ---SSVDLVTIA--AALHWFDLPQFYKQVK 73 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~---~sfDlV~~~--~~~hw~d~~~~~~e~~ 73 (213)
..++|+.+|+.+.+++.-++. -+++....|. .+ |+|+ ++||+++.- +.. -...-++....
T Consensus 66 ~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~Dl-------R~-~LP~~~~~~fD~f~TDPPyT~--~G~~LFlsRgi 135 (243)
T PF01861_consen 66 LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDL-------RD-PLPEELRGKFDVFFTDPPYTP--EGLKLFLSRGI 135 (243)
T ss_dssp --SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---T-------TS----TTTSS-BSEEEE---SSH--HHHHHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecc-------cc-cCCHHHhcCCCEEEeCCCCCH--HHHHHHHHHHH
Confidence 357999999999999987652 2366666554 32 3443 789998741 111 02235567788
Q ss_pred HHhcCCCeEEEEEeCC
Q 035840 74 WVLKKPNGVIAAWTYT 89 (213)
Q Consensus 74 rvLk~pgG~l~~~~~~ 89 (213)
..|| ..|...+.+++
T Consensus 136 ~~Lk-~~g~~gy~~~~ 150 (243)
T PF01861_consen 136 EALK-GEGCAGYFGFT 150 (243)
T ss_dssp HTB--STT-EEEEEE-
T ss_pred HHhC-CCCceEEEEEe
Confidence 8999 45544455554
No 278
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=62.93 E-value=56 Score=27.02 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=45.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEe-cCC-CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQL-TPP-TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~-~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..+|++++.|++..+.+++.. +.... ... +.....+... .++.+|+|+-+.+- ..+.++.++|+ +||+
T Consensus 163 G~~Vi~~~~s~~~~~~~~~lG-a~~vi~~~~~~~~~~~~~~~--~~~gvdvv~d~~G~------~~~~~~~~~l~-~~G~ 232 (325)
T TIGR02825 163 GCKVVGAAGSDEKVAYLKKLG-FDVAFNYKTVKSLEETLKKA--SPDGYDCYFDNVGG------EFSNTVIGQMK-KFGR 232 (325)
T ss_pred CCEEEEEeCCHHHHHHHHHcC-CCEEEeccccccHHHHHHHh--CCCCeEEEEECCCH------HHHHHHHHHhC-cCcE
Confidence 458999999999999998752 32221 111 0111111121 23469999854432 35688899999 9999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.....
T Consensus 233 iv~~G~ 238 (325)
T TIGR02825 233 IAICGA 238 (325)
T ss_pred EEEecc
Confidence 986643
No 279
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=61.96 E-value=57 Score=26.82 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCce-EEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIR-YQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~-~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.|++-.+.+++. +++ ......+.....+..+ .++.+|+|+-+.+ ...+.+..+.|+ ++|++
T Consensus 168 G~~vi~~~~s~~~~~~l~~~-Ga~~vi~~~~~~~~~~v~~~--~~~gvd~vld~~g------~~~~~~~~~~l~-~~G~i 237 (329)
T cd08294 168 GCKVIGCAGSDDKVAWLKEL-GFDAVFNYKTVSLEEALKEA--APDGIDCYFDNVG------GEFSSTVLSHMN-DFGRV 237 (329)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCccHHHHHHHH--CCCCcEEEEECCC------HHHHHHHHHhhc-cCCEE
Confidence 45899999999999998875 232 2222211111112222 2356999885443 256789999999 99999
Q ss_pred EEEe
Q 035840 84 AAWT 87 (213)
Q Consensus 84 ~~~~ 87 (213)
....
T Consensus 238 v~~g 241 (329)
T cd08294 238 AVCG 241 (329)
T ss_pred EEEc
Confidence 7654
No 280
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.59 E-value=25 Score=29.34 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=45.3
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCC-CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPP-TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~-~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
.+|++++.++.....+++.. +....... ......+..+ .++..+|+|+-+. .....+..+.+.|+ ++|++.
T Consensus 192 ~~v~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~-----g~~~~~~~~~~~l~-~~g~~v 263 (345)
T cd08286 192 SKIIMVDLDDNRLEVAKKLG-ATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV-----GIPATFELCQELVA-PGGHIA 263 (345)
T ss_pred CeEEEEcCCHHHHHHHHHhC-CCceeccccccHHHHHHHH-hCCCCCCEEEECC-----CCHHHHHHHHHhcc-CCcEEE
Confidence 47889999998888887653 22222111 0011111222 2334599998554 23456888999999 999987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 264 ~~g~ 267 (345)
T cd08286 264 NVGV 267 (345)
T ss_pred Eecc
Confidence 6543
No 281
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=61.11 E-value=38 Score=27.55 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=45.6
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|+++|.++.-++.|++.. +.......+ ....+.+. .....+|+|+-+.+ ...++.++.+.|+ |||++.+.
T Consensus 147 ~Vi~~~~~~~r~~~a~~~G-a~~~i~~~~-~~~~~~~~-~~~~g~d~vid~~G-----~~~~~~~~~~~l~-~~G~iv~~ 217 (280)
T TIGR03366 147 RVVAADPSPDRRELALSFG-ATALAEPEV-LAERQGGL-QNGRGVDVALEFSG-----ATAAVRACLESLD-VGGTAVLA 217 (280)
T ss_pred EEEEECCCHHHHHHHHHcC-CcEecCchh-hHHHHHHH-hCCCCCCEEEECCC-----ChHHHHHHHHHhc-CCCEEEEe
Confidence 4999999999999998763 222211110 00111111 12345888875443 2567899999999 99999877
Q ss_pred eC
Q 035840 87 TY 88 (213)
Q Consensus 87 ~~ 88 (213)
..
T Consensus 218 G~ 219 (280)
T TIGR03366 218 GS 219 (280)
T ss_pred cc
Confidence 64
No 282
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=60.64 E-value=22 Score=28.86 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCeEEEEeCCHHHHHH-hhcCCCceEE-ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEF-AIKLPNIRYQ-LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~-Ar~~~~v~~~-~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
.++|+|+|.+-+|+.. -|.-+.+... ..++..+ ..-.+.+ ..|++++--|| +-...++..+..+++ |||-
T Consensus 102 Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l----~~~~~~~-~~d~~v~DvSF--ISL~~iLp~l~~l~~-~~~~ 173 (245)
T COG1189 102 AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYL----TPEDFTE-KPDLIVIDVSF--ISLKLILPALLLLLK-DGGD 173 (245)
T ss_pred CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhC----CHHHccc-CCCeEEEEeeh--hhHHHHHHHHHHhcC-CCce
Confidence 5799999999999887 3333444333 2333111 1111333 58899987765 456789999999999 8987
Q ss_pred EEEE
Q 035840 83 IAAW 86 (213)
Q Consensus 83 l~~~ 86 (213)
+...
T Consensus 174 ~v~L 177 (245)
T COG1189 174 LVLL 177 (245)
T ss_pred EEEE
Confidence 7543
No 283
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=60.18 E-value=14 Score=30.14 Aligned_cols=67 Identities=15% Similarity=-0.000 Sum_probs=44.4
Q ss_pred cccCCeEEEEeCCHHHHHHhhc----CCCceEEecCCCCcchhhccCCCCC---CceeeeeechhhccCChhHHHHHHHH
Q 035840 2 AKIYKNVIATDTSPKQLEFAIK----LPNIRYQLTPPTMSITELEQNVATQ---SSVDLVTIAAALHWFDLPQFYKQVKW 74 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~----~~~v~~~~~~~~~~~~d~~~~~~~~---~sfDlV~~~~~~hw~d~~~~~~e~~r 74 (213)
+.++++|+++|+++.+.+..++ .++++.+.+|+ .++...+ +.-..|+++--. ---...+.++..
T Consensus 49 ~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~-------l~~~~~~~~~~~~~~vv~NlPy--~is~~il~~ll~ 119 (262)
T PF00398_consen 49 LKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF-------LKWDLYDLLKNQPLLVVGNLPY--NISSPILRKLLE 119 (262)
T ss_dssp HHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T-------TTSCGGGHCSSSEEEEEEEETG--TGHHHHHHHHHH
T ss_pred hcccCcceeecCcHhHHHHHHHHhhhcccceeeecch-------hccccHHhhcCCceEEEEEecc--cchHHHHHHHhh
Confidence 4556899999999999999987 36788888877 6665544 456677765433 222345566655
Q ss_pred Hhc
Q 035840 75 VLK 77 (213)
Q Consensus 75 vLk 77 (213)
.-+
T Consensus 120 ~~~ 122 (262)
T PF00398_consen 120 LYR 122 (262)
T ss_dssp HGG
T ss_pred ccc
Confidence 334
No 284
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=59.46 E-value=63 Score=27.29 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCeEEEEeCCHHHHHHhh-cCCCceEEe-cCC-CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 5 YKNVIATDTSPKQLEFAI-KLPNIRYQL-TPP-TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar-~~~~v~~~~-~~~-~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
..+|++++.|++..+.++ +. ++.... ... +.....+... .++.+|+|+-+.+ ...+.++.+.|+ +||
T Consensus 183 G~~Vi~~~~~~~k~~~~~~~l-Ga~~vi~~~~~~~~~~~i~~~--~~~gvD~v~d~vG------~~~~~~~~~~l~-~~G 252 (348)
T PLN03154 183 GCYVVGSAGSSQKVDLLKNKL-GFDEAFNYKEEPDLDAALKRY--FPEGIDIYFDNVG------GDMLDAALLNMK-IHG 252 (348)
T ss_pred CCEEEEEcCCHHHHHHHHHhc-CCCEEEECCCcccHHHHHHHH--CCCCcEEEEECCC------HHHHHHHHHHhc-cCC
Confidence 457999999999999887 44 232222 111 0111112222 1246999985544 247788999999 999
Q ss_pred EEEEEeC
Q 035840 82 VIAAWTY 88 (213)
Q Consensus 82 ~l~~~~~ 88 (213)
++.+...
T Consensus 253 ~iv~~G~ 259 (348)
T PLN03154 253 RIAVCGM 259 (348)
T ss_pred EEEEECc
Confidence 9987653
No 285
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=58.17 E-value=62 Score=26.26 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|+++..+++..+.+++. ++.......+.....+..+ .+.+|+|+.+.+ ...+.++.+.|+ ++|++.
T Consensus 167 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~---~~~~d~vl~~~~------~~~~~~~~~~l~-~~g~~v 235 (320)
T cd08243 167 GATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA---PGGFDKVLELVG------TATLKDSLRHLR-PGGIVC 235 (320)
T ss_pred CCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh---CCCceEEEECCC------hHHHHHHHHHhc-cCCEEE
Confidence 45799999999988888764 2322221111111122222 456999986543 246888899999 999987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 236 ~~g~ 239 (320)
T cd08243 236 MTGL 239 (320)
T ss_pred EEcc
Confidence 6643
No 286
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=57.84 E-value=11 Score=31.61 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=26.0
Q ss_pred echhhc-cC-----ChhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 56 IAAALH-WF-----DLPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 56 ~~~~~h-w~-----d~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
..|++. ++ ..+.++..+.++|+ |||+|++.++.
T Consensus 208 ~FQAiRI~VNdEL~~L~~~L~~a~~~L~-~gGRl~VIsFH 246 (314)
T COG0275 208 TFQAIRIYVNDELEELEEALEAALDLLK-PGGRLAVISFH 246 (314)
T ss_pred hhhhheeeehhHHHHHHHHHHHHHHhhC-CCcEEEEEEec
Confidence 566665 44 34688899999999 99999988766
No 287
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.83 E-value=50 Score=27.69 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
+|++++.++...+.+++. ++..... ........+.+. .+.+.+|+|+-+... ...+.++.+.|+ +||++..
T Consensus 199 ~v~~~~~~~~~~~~~~~~-ga~~~i~~~~~~~~~~l~~~-~~~~~~d~vid~~g~-----~~~~~~~~~~l~-~~G~~v~ 270 (351)
T cd08233 199 KIIVSEPSEARRELAEEL-GATIVLDPTEVDVVAEVRKL-TGGGGVDVSFDCAGV-----QATLDTAIDALR-PRGTAVN 270 (351)
T ss_pred EEEEECCCHHHHHHHHHh-CCCEEECCCccCHHHHHHHH-hCCCCCCEEEECCCC-----HHHHHHHHHhcc-CCCEEEE
Confidence 799999999999988765 2332221 110011111221 233458998855432 357789999999 9999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 271 ~g~ 273 (351)
T cd08233 271 VAI 273 (351)
T ss_pred Ecc
Confidence 654
No 288
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.71 E-value=53 Score=27.50 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|+++|.+++..+.+++.. +.... ..-......+... .....+|+|+-+.+ ...++.++.+.|+ ++|++..
T Consensus 193 ~v~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~g-----~~~~~~~~~~~l~-~~G~~v~ 264 (351)
T cd08285 193 RIIAVGSRPNRVELAKEYG-ATDIVDYKNGDVVEQILKL-TGGKGVDAVIIAGG-----GQDTFEQALKVLK-PGGTISN 264 (351)
T ss_pred eEEEEeCCHHHHHHHHHcC-CceEecCCCCCHHHHHHHH-hCCCCCcEEEECCC-----CHHHHHHHHHHhh-cCCEEEE
Confidence 6999999999999888753 22221 1110000111111 23346898885433 2467899999999 9999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
.+.
T Consensus 265 ~g~ 267 (351)
T cd08285 265 VNY 267 (351)
T ss_pred ecc
Confidence 543
No 289
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=57.43 E-value=52 Score=27.31 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|+++..|++..+.++++....+.....+.....+... .++..+|+++.+.. -...+.++.+.|+ ++|+++
T Consensus 183 g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vld~~g-----~~~~~~~~~~~l~-~~G~~i 255 (337)
T cd08261 183 GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLREL-TDGEGADVVIDATG-----NPASMEEAVELVA-HGGRVV 255 (337)
T ss_pred CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHH-hCCCCCCEEEECCC-----CHHHHHHHHHHHh-cCCEEE
Confidence 5578899888998888876532122211111111112222 23455899986532 2456899999999 999987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 256 ~~g~ 259 (337)
T cd08261 256 LVGL 259 (337)
T ss_pred EEcC
Confidence 6543
No 290
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=57.06 E-value=49 Score=28.45 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=50.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCC-CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPT-MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~-~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+|+|+++.=++.|+++.-..++...-. .+..-+.+ ..++..|.++ .-......+++....+. ++|..
T Consensus 210 A~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~--~T~gG~d~~~-----e~~G~~~~~~~al~~~~-~~G~~ 281 (366)
T COG1062 210 AGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVE--LTDGGADYAF-----ECVGNVEVMRQALEATH-RGGTS 281 (366)
T ss_pred CceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHH--hcCCCCCEEE-----EccCCHHHHHHHHHHHh-cCCeE
Confidence 5699999999999999999743333332110 01111111 2343566553 22244569999999999 89999
Q ss_pred EEEeCCCC
Q 035840 84 AAWTYTMP 91 (213)
Q Consensus 84 ~~~~~~~~ 91 (213)
.+.....+
T Consensus 282 v~iGv~~~ 289 (366)
T COG1062 282 VIIGVAGA 289 (366)
T ss_pred EEEecCCC
Confidence 88876544
No 291
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=56.55 E-value=13 Score=31.19 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=26.9
Q ss_pred echhhc-cC-----ChhHHHHHHHHHhcCCCeEEEEEeCCC
Q 035840 56 IAAALH-WF-----DLPQFYKQVKWVLKKPNGVIAAWTYTM 90 (213)
Q Consensus 56 ~~~~~h-w~-----d~~~~~~e~~rvLk~pgG~l~~~~~~~ 90 (213)
..||+. .+ ....++..+..+|+ |||++++.+|..
T Consensus 200 ~FQAlRI~VN~El~~L~~~L~~~~~~L~-~gGrl~visfHS 239 (296)
T PRK00050 200 TFQALRIEVNDELEELERALEAALDLLK-PGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhc-CCCEEEEEecCc
Confidence 677776 33 34678899999999 999999888773
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=55.75 E-value=65 Score=26.94 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=43.2
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCcee-eeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVD-LVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfD-lV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++.+++-++.+++.. +......-+.....+.+. .....+| +|+=+.. ...++.+..+.|+ +||++.+
T Consensus 187 ~v~~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~-~~~~~~d~~v~d~~G-----~~~~~~~~~~~l~-~~G~iv~ 258 (347)
T PRK10309 187 SVTAIDINSEKLALAKSLG-AMQTFNSREMSAPQIQSV-LRELRFDQLILETAG-----VPQTVELAIEIAG-PRAQLAL 258 (347)
T ss_pred eEEEECCCHHHHHHHHHcC-CceEecCcccCHHHHHHH-hcCCCCCeEEEECCC-----CHHHHHHHHHHhh-cCCEEEE
Confidence 4799999999999988653 222211110000111111 1233576 5543222 2468899999999 9999987
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 259 ~G~ 261 (347)
T PRK10309 259 VGT 261 (347)
T ss_pred Ecc
Confidence 754
No 293
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.05 E-value=64 Score=26.80 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=44.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.|++++.++.+.+.+++..-..+....... ...+... .+...+|+|+.+. .....+..+.+.|+ ++|++...
T Consensus 186 ~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~d~vld~~-----g~~~~~~~~~~~l~-~~G~~v~~ 257 (343)
T cd08236 186 RVIAVDIDDEKLAVARELGADDTINPKEED-VEKVREL-TEGRGADLVIEAA-----GSPATIEQALALAR-PGGKVVLV 257 (343)
T ss_pred EEEEEcCCHHHHHHHHHcCCCEEecCcccc-HHHHHHH-hCCCCCCEEEECC-----CCHHHHHHHHHHhh-cCCEEEEE
Confidence 389999999988887654221222211110 1122222 2334589998552 23567889999999 99998766
Q ss_pred e
Q 035840 87 T 87 (213)
Q Consensus 87 ~ 87 (213)
+
T Consensus 258 g 258 (343)
T cd08236 258 G 258 (343)
T ss_pred c
Confidence 5
No 294
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.54 E-value=52 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=43.3
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+|++++.+++.++.+++.....-.. .. ..-......+|+|+-+.. ....+.+..+.|+ ++|++...
T Consensus 124 ~vi~~~~~~~~~~~~~~~g~~~~~~-~~-------~~~~~~~~~~d~vl~~~~-----~~~~~~~~~~~l~-~~g~~~~~ 189 (277)
T cd08255 124 EVVGVDPDAARRELAEALGPADPVA-AD-------TADEIGGRGADVVIEASG-----SPSALETALRLLR-DRGRVVLV 189 (277)
T ss_pred cEEEECCCHHHHHHHHHcCCCcccc-cc-------chhhhcCCCCCEEEEccC-----ChHHHHHHHHHhc-CCcEEEEE
Confidence 3999999999999888653011000 00 100123446898875432 2357788999999 99999866
Q ss_pred eCC
Q 035840 87 TYT 89 (213)
Q Consensus 87 ~~~ 89 (213)
...
T Consensus 190 g~~ 192 (277)
T cd08255 190 GWY 192 (277)
T ss_pred ecc
Confidence 543
No 295
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=54.27 E-value=12 Score=31.67 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred echhhc-cCC-----hhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 56 IAAALH-WFD-----LPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 56 ~~~~~h-w~d-----~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
..|++. +++ ...++..+..+|+ |||++++.++.
T Consensus 205 ~FQALRI~VN~EL~~L~~~L~~a~~~L~-~gGrl~VISFH 243 (310)
T PF01795_consen 205 VFQALRIAVNDELEELERGLEAAPDLLK-PGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHHHEE-EEEEEEEEESS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEEec
Confidence 566665 442 3578889999999 99999998887
No 296
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.19 E-value=27 Score=26.99 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCCCceeeeeechhhccC-------------ChhHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035840 46 ATQSSVDLVTIAAALHWF-------------DLPQFYKQVKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 46 ~~~~sfDlV~~~~~~hw~-------------d~~~~~~e~~rvLk~pgG~l~~~~~~~~ 91 (213)
++++..|+|+++.|+|=+ +.++.+..+..+|+ |+ .+.||....|
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp-~~-allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLP-IE-CLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCC-Cc-cEEEEecCCC
Confidence 778889999999999622 22455556666666 66 6668887765
No 297
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=54.11 E-value=18 Score=30.48 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=38.6
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeechhh--c-cCChhHHH
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL--H-WFDLPQFY 69 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~--h-w~d~~~~~ 69 (213)
++|+|+|.++.+++.|++. .++.++.++...+..-+.+ .+.+++|.|++-.++ + +=++...|
T Consensus 45 g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~--~~~~~vDgIl~DLGvSS~Qld~~~RGF 114 (305)
T TIGR00006 45 GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE--LLVTKIDGILVDLGVSSPQLDDPERGF 114 (305)
T ss_pred CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh--cCCCcccEEEEeccCCHhhcCCCCCCC
Confidence 7999999999999999873 2566666655222111122 244679999954433 3 32555544
No 298
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=53.81 E-value=18 Score=29.42 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=40.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|+|.|+++..++.|.+..-+.-...+. +. +. .+|+|+.+.-.. -....++++...++ +|+.+.
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~-------~~--~~--~~DlvvlavP~~--~~~~~l~~~~~~~~-~~~iv~ 76 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALELGIIDEASTDI-------EA--VE--DADLVVLAVPVS--AIEDVLEEIAPYLK-PGAIVT 76 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHTTSSSEEESHH-------HH--GG--CCSEEEE-S-HH--HHHHHHHHHHCGS--TTSEEE
T ss_pred CeEEEEEeCCHHHHHHHHHCCCeeeccCCH-------hH--hc--CCCEEEEcCCHH--HHHHHHHHhhhhcC-CCcEEE
Confidence 369999999999999998763222111111 22 22 269999776443 25677788888888 787765
No 299
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=52.94 E-value=63 Score=27.37 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEE-ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQ-LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~-~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|+++|.++...+.+++.. +... ....+.....+.... ...+|+|+-+.. ....+.++.+.|+ ++|++..
T Consensus 213 ~v~~~~~~~~k~~~~~~~g-~~~~i~~~~~~~~~~v~~~~--~~~~d~vld~~g-----~~~~~~~~~~~l~-~~G~~v~ 283 (365)
T cd08278 213 TIIAVDIVDSRLELAKELG-ATHVINPKEEDLVAAIREIT--GGGVDYALDTTG-----VPAVIEQAVDALA-PRGTLAL 283 (365)
T ss_pred eEEEEeCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHHh--CCCCcEEEECCC-----CcHHHHHHHHHhc-cCCEEEE
Confidence 6999999999998888753 2222 211111111122222 445898885432 2457889999999 8999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 284 ~g~ 286 (365)
T cd08278 284 VGA 286 (365)
T ss_pred eCc
Confidence 653
No 300
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.70 E-value=24 Score=32.01 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=49.2
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCC----------------CCcchhhccCCCCCCceeeeeechhhccC-Chh
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPP----------------TMSITELEQNVATQSSVDLVTIAAALHWF-DLP 66 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~----------------~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~ 66 (213)
.+..|+++|.+++-++.++.. +.++..-+. ++.+...+.++-.-..+|+|+.+..+.-. .|.
T Consensus 186 lGA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~ 264 (511)
T TIGR00561 186 LGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK 264 (511)
T ss_pred CCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe
Confidence 356899999999999999975 334322211 00000000011112459999877766654 343
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 035840 67 QFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 67 ~~~~e~~rvLk~pgG~l~ 84 (213)
-..+++.+.+| ||+.++
T Consensus 265 Lit~emv~~MK-pGsvIV 281 (511)
T TIGR00561 265 LITEEMVDSMK-AGSVIV 281 (511)
T ss_pred eehHHHHhhCC-CCCEEE
Confidence 47799999999 999876
No 301
>PLN02740 Alcohol dehydrogenase-like
Probab=51.91 E-value=64 Score=27.59 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=45.8
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCC--CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPP--TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GVI 83 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~--~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~l 83 (213)
+|+++|.+++-++.|++..-..+..... +.....+.++ ..+.+|+|+-+.+ ...++.+..+.++ +| |++
T Consensus 225 ~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~dvvid~~G-----~~~~~~~a~~~~~-~g~G~~ 296 (381)
T PLN02740 225 KIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREM--TGGGVDYSFECAG-----NVEVLREAFLSTH-DGWGLT 296 (381)
T ss_pred cEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHH--hCCCCCEEEECCC-----ChHHHHHHHHhhh-cCCCEE
Confidence 6999999999999998763212221111 0000111222 1226898886544 3467888889999 87 998
Q ss_pred EEEeCC
Q 035840 84 AAWTYT 89 (213)
Q Consensus 84 ~~~~~~ 89 (213)
.+.+..
T Consensus 297 v~~G~~ 302 (381)
T PLN02740 297 VLLGIH 302 (381)
T ss_pred EEEccC
Confidence 776543
No 302
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=51.37 E-value=41 Score=29.65 Aligned_cols=71 Identities=14% Similarity=0.009 Sum_probs=46.7
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHH-HHHHhcCCCeE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQ-VKWVLKKPNGV 82 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e-~~rvLk~pgG~ 82 (213)
...+|+++|+++.-++.|+.. ++... .. ++. + ..+|+|+.+.+ ...++.. ..+.+| +||.
T Consensus 224 ~Ga~ViV~d~d~~R~~~A~~~-G~~~~--~~-------~e~-v--~~aDVVI~atG-----~~~~i~~~~l~~mk-~Ggi 284 (413)
T cd00401 224 QGARVIVTEVDPICALQAAME-GYEVM--TM-------EEA-V--KEGDIFVTTTG-----NKDIITGEHFEQMK-DGAI 284 (413)
T ss_pred CCCEEEEEECChhhHHHHHhc-CCEEc--cH-------HHH-H--cCCCEEEECCC-----CHHHHHHHHHhcCC-CCcE
Confidence 356899999999999988865 33222 11 211 1 24799987654 3456655 489999 8999
Q ss_pred EEEEeCCCCCc
Q 035840 83 IAAWTYTMPEI 93 (213)
Q Consensus 83 l~~~~~~~~~~ 93 (213)
++..+..+..+
T Consensus 285 lvnvG~~~~eI 295 (413)
T cd00401 285 VCNIGHFDVEI 295 (413)
T ss_pred EEEeCCCCCcc
Confidence 98777553333
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=50.64 E-value=55 Score=27.08 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=41.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.|+++|.++..++.|.+.. ..+. .+. ....+|+|+-+.. ....+.++.+.|+ |||++.+.
T Consensus 171 ~v~~~~~~~~rl~~a~~~~-----~i~~-------~~~--~~~g~Dvvid~~G-----~~~~~~~~~~~l~-~~G~iv~~ 230 (308)
T TIGR01202 171 PPAVWETNPRRRDGATGYE-----VLDP-------EKD--PRRDYRAIYDASG-----DPSLIDTLVRRLA-KGGEIVLA 230 (308)
T ss_pred eEEEeCCCHHHHHhhhhcc-----ccCh-------hhc--cCCCCCEEEECCC-----CHHHHHHHHHhhh-cCcEEEEE
Confidence 4778899998888877431 1111 110 2345898885544 2457889999999 99999876
Q ss_pred eC
Q 035840 87 TY 88 (213)
Q Consensus 87 ~~ 88 (213)
..
T Consensus 231 G~ 232 (308)
T TIGR01202 231 GF 232 (308)
T ss_pred ee
Confidence 54
No 304
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=50.52 E-value=34 Score=29.72 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------C-CceEEecCCCCcchhhccC-CCCCCceeeeeechhhccC-ChhHHHHHHHH
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------P-NIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWF-DLPQFYKQVKW 74 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~-~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~r 74 (213)
..+|++-|+|++.++..++. . .++....|| ..+ ......||+|=. --+ -+..++..+.+
T Consensus 74 ~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA-------n~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~ 142 (377)
T PF02005_consen 74 VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA-------NVLLYSRQERFDVIDL----DPFGSPAPFLDSALQ 142 (377)
T ss_dssp ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H-------HHHHCHSTT-EEEEEE------SS--HHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH-------HHHhhhccccCCEEEe----CCCCCccHhHHHHHH
Confidence 46899999999999998872 2 355556666 222 125666888752 112 34588999999
Q ss_pred HhcCCCeEEEEEeCC
Q 035840 75 VLKKPNGVIAAWTYT 89 (213)
Q Consensus 75 vLk~pgG~l~~~~~~ 89 (213)
.+| .||.|++...+
T Consensus 143 ~v~-~gGll~vTaTD 156 (377)
T PF02005_consen 143 AVK-DGGLLCVTATD 156 (377)
T ss_dssp HEE-EEEEEEEEE--
T ss_pred Hhh-cCCEEEEeccc
Confidence 999 79999887654
No 305
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.96 E-value=53 Score=28.49 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=44.0
Q ss_pred eEEEEeCCHHHHHHhhcC-C------CceEEecCC---CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 7 NVIATDTSPKQLEFAIKL-P------NIRYQLTPP---TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~-~------~v~~~~~~~---~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
+|+++|.++.-++.|++. . ++.....+. +.....+.++ .....+|+|+-+.+ ....+.+..+.+
T Consensus 205 ~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~-t~g~g~D~vid~~g-----~~~~~~~a~~~l 278 (410)
T cd08238 205 LLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL-TGGQGFDDVFVFVP-----VPELVEEADTLL 278 (410)
T ss_pred eEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH-hCCCCCCEEEEcCC-----CHHHHHHHHHHh
Confidence 799999999999999874 1 222111111 0010111111 12345888875432 257888999999
Q ss_pred cCCCeEEEEE
Q 035840 77 KKPNGVIAAW 86 (213)
Q Consensus 77 k~pgG~l~~~ 86 (213)
+ ++|.+.+.
T Consensus 279 ~-~~G~~v~~ 287 (410)
T cd08238 279 A-PDGCLNFF 287 (410)
T ss_pred c-cCCeEEEE
Confidence 9 89987654
No 306
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=49.56 E-value=76 Score=25.30 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCeEEEEeCCHHH----HHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 5 YKNVIATDTSPKQ----LEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 5 ~~~V~gvD~S~~m----l~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
-+.|+||+.|+.+ |..|++++|+-=..+||..= +.-..-=..+|+|+.--+ +---..-+..++..-|| +|
T Consensus 100 ~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P----~~Y~~~Ve~VDviy~DVA-Qp~Qa~I~~~Na~~FLk-~~ 173 (231)
T COG1889 100 EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKP----EKYRHLVEKVDVIYQDVA-QPNQAEILADNAEFFLK-KG 173 (231)
T ss_pred CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCc----HHhhhhcccccEEEEecC-CchHHHHHHHHHHHhcc-cC
Confidence 3579999999976 55677788876666666200 000011134888874222 11123445688889999 89
Q ss_pred eEEEEE
Q 035840 81 GVIAAW 86 (213)
Q Consensus 81 G~l~~~ 86 (213)
|.+.+.
T Consensus 174 G~~~i~ 179 (231)
T COG1889 174 GYVVIA 179 (231)
T ss_pred CeEEEE
Confidence 966543
No 307
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.50 E-value=99 Score=25.96 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=44.6
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCc---chhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMS---ITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~---~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
+|++++.+++..+.+++.. +.... ...... ...+.++ .+.+.+|+|+-+.. ....+.+..+.|+ ++|+
T Consensus 204 ~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~g-----~~~~~~~~~~~l~-~~G~ 275 (361)
T cd08231 204 RVIVIDGSPERLELAREFG-ADATIDIDELPDPQRRAIVRDI-TGGRGADVVIEASG-----HPAAVPEGLELLR-RGGT 275 (361)
T ss_pred eEEEEcCCHHHHHHHHHcC-CCeEEcCcccccHHHHHHHHHH-hCCCCCcEEEECCC-----ChHHHHHHHHHhc-cCCE
Confidence 8999999999988887652 32221 111000 0011222 12345898885432 1356788999999 9999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.....
T Consensus 276 ~v~~g~ 281 (361)
T cd08231 276 YVLVGS 281 (361)
T ss_pred EEEEcC
Confidence 986654
No 308
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=49.47 E-value=16 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCceeeeeech-hhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 48 QSSVDLVTIAA-ALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 48 ~~sfDlV~~~~-~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.+-||+|+.+. +.|.+.+. +.++++ |||.|++=
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a-~~A~LvvE 253 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALA-PDAVLVVE 253 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhC-CCCEEEEE
Confidence 35699999554 44676665 777889 99988553
No 309
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=48.40 E-value=1e+02 Score=25.30 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.++...+.+++. ++...... .. .+.+.+|+++.+... ...+.++.+.|+ +||+++
T Consensus 191 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~--------~~--~~~~~vD~vi~~~~~-----~~~~~~~~~~l~-~~G~~v 253 (329)
T cd08298 191 GAEVFAFTRSGEHQELAREL-GADWAGDS--------DD--LPPEPLDAAIIFAPV-----GALVPAALRAVK-KGGRVV 253 (329)
T ss_pred CCeEEEEcCChHHHHHHHHh-CCcEEecc--------Cc--cCCCcccEEEEcCCc-----HHHHHHHHHHhh-cCCEEE
Confidence 45888999998888888654 33322211 11 123458888754322 357899999999 999998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 254 ~~g~ 257 (329)
T cd08298 254 LAGI 257 (329)
T ss_pred EEcC
Confidence 6653
No 310
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=47.74 E-value=72 Score=26.53 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=44.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceE-EecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRY-QLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~-~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
+|++++.|+..++.+++.. ++. ....-......+..+ ..++.+|+|+-+.. ....+.++.+.|+ ++|.++.
T Consensus 190 ~v~~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~~g-----~~~~~~~~~~~l~-~~G~~v~ 261 (341)
T PRK05396 190 HVVITDVNEYRLELARKMG-ATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEMSG-----APSAFRQMLDNMN-HGGRIAM 261 (341)
T ss_pred EEEEEcCCHHHHHHHHHhC-CcEEecCccccHHHHHHHh-cCCCCCCEEEECCC-----CHHHHHHHHHHHh-cCCEEEE
Confidence 6888888888887777652 222 211110000111222 23456888875432 2467889999999 9999987
Q ss_pred EeCC
Q 035840 86 WTYT 89 (213)
Q Consensus 86 ~~~~ 89 (213)
....
T Consensus 262 ~g~~ 265 (341)
T PRK05396 262 LGIP 265 (341)
T ss_pred EecC
Confidence 7543
No 311
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=47.56 E-value=1.3e+02 Score=25.10 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHhhc-CCCceEEec--CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 5 YKNVIATDTSPKQLEFAIK-LPNIRYQLT--PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~-~~~v~~~~~--~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
..+|++++.|++..+.+++ . ++..... +.+.....+... .++.+|+|+-+.+ ...+.++.+.|+ ++|
T Consensus 176 G~~Vi~~~~~~~~~~~~~~~l-Ga~~vi~~~~~~~~~~~i~~~--~~~gvd~v~d~~g------~~~~~~~~~~l~-~~G 245 (338)
T cd08295 176 GCYVVGSAGSDEKVDLLKNKL-GFDDAFNYKEEPDLDAALKRY--FPNGIDIYFDNVG------GKMLDAVLLNMN-LHG 245 (338)
T ss_pred CCEEEEEeCCHHHHHHHHHhc-CCceeEEcCCcccHHHHHHHh--CCCCcEEEEECCC------HHHHHHHHHHhc-cCc
Confidence 4589999999999998886 4 2322211 110111112222 1256999985433 256889999999 999
Q ss_pred EEEEEeC
Q 035840 82 VIAAWTY 88 (213)
Q Consensus 82 ~l~~~~~ 88 (213)
+++....
T Consensus 246 ~iv~~G~ 252 (338)
T cd08295 246 RIAACGM 252 (338)
T ss_pred EEEEecc
Confidence 9986643
No 312
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=46.66 E-value=1e+02 Score=26.36 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=46.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCC----CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPT----MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~----~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
+|++++.++...+.+++.. ++.....-+ .....+..+ .+...+|+|+.+.+ +...++.++.+.|+ ++|+
T Consensus 230 ~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvld~~g----~~~~~~~~~~~~l~-~~G~ 302 (384)
T cd08265 230 KVIAFEISEERRNLAKEMG-ADYVFNPTKMRDCLSGEKVMEV-TKGWGADIQVEAAG----APPATIPQMEKSIA-INGK 302 (384)
T ss_pred EEEEEcCCHHHHHHHHHcC-CCEEEcccccccccHHHHHHHh-cCCCCCCEEEECCC----CcHHHHHHHHHHHH-cCCE
Confidence 7999999998888888753 322221110 001112222 23446999886533 34567889999999 8999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+...+.
T Consensus 303 ~v~~g~ 308 (384)
T cd08265 303 IVYIGR 308 (384)
T ss_pred EEEECC
Confidence 986653
No 313
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.88 E-value=94 Score=25.60 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhh-ccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITEL-EQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~-~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++.|++..+.+++.. +.......+ .++ +.....++.+|+|+.+.. ....+.++.+.|+ ++|+++.
T Consensus 186 ~v~~~~~~~~~~~~~~~~g-~~~~~~~~~---~~~~~~~~~~~~~vd~v~~~~~-----~~~~~~~~~~~l~-~~G~~v~ 255 (334)
T cd08234 186 RVTVAEPNEEKLELAKKLG-ATETVDPSR---EDPEAQKEDNPYGFDVVIEATG-----VPKTLEQAIEYAR-RGGTVLV 255 (334)
T ss_pred EEEEECCCHHHHHHHHHhC-CeEEecCCC---CCHHHHHHhcCCCCcEEEECCC-----ChHHHHHHHHHHh-cCCEEEE
Confidence 4899999999998887652 322221110 000 001123456999986532 2467889999999 9999986
Q ss_pred EeCC
Q 035840 86 WTYT 89 (213)
Q Consensus 86 ~~~~ 89 (213)
....
T Consensus 256 ~g~~ 259 (334)
T cd08234 256 FGVY 259 (334)
T ss_pred EecC
Confidence 6543
No 314
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=45.54 E-value=88 Score=25.52 Aligned_cols=77 Identities=19% Similarity=0.086 Sum_probs=43.4
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
...+|+.++.++...+.++..................+... .....+|+++.+.+- ..+.++.+.|+ ++|++
T Consensus 190 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~g~------~~~~~~~~~l~-~~G~~ 261 (342)
T cd08266 190 FGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVREL-TGKRGVDVVVEHVGA------ATWEKSLKSLA-RGGRL 261 (342)
T ss_pred cCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHH-hCCCCCcEEEECCcH------HHHHHHHHHhh-cCCEE
Confidence 34578888888888887765421111111110000111111 223468999866542 45678889999 89998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
+....
T Consensus 262 v~~~~ 266 (342)
T cd08266 262 VTCGA 266 (342)
T ss_pred EEEec
Confidence 76543
No 315
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.48 E-value=1.3e+02 Score=24.99 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=45.0
Q ss_pred EEEEeCCHHHHHHhhcCCCceEEecCCCCc---chhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 8 VIATDTSPKQLEFAIKLPNIRYQLTPPTMS---ITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 8 V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~---~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
|++++.++...+.+++...-.+....-+.. ...+... .....+|+|+-+... ...+.++.+.|+ ++|+++
T Consensus 190 v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~vld~~g~-----~~~~~~~~~~l~-~~G~~v 262 (343)
T cd05285 190 VVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVVIECTGA-----ESCIQTAIYATR-PGGTVV 262 (343)
T ss_pred EEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEEEECCCC-----HHHHHHHHHHhh-cCCEEE
Confidence 899999999988887652212221111000 0112222 344559999865442 347889999999 999987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 263 ~~g~ 266 (343)
T cd05285 263 LVGM 266 (343)
T ss_pred EEcc
Confidence 6654
No 316
>PLN02827 Alcohol dehydrogenase-like
Probab=44.39 E-value=85 Score=26.88 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=44.7
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCC---CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPP---TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~---~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~ 82 (213)
.|+++|.++..++.|++.. +......- +.....+.++ ..+.+|+|+-+.+ ....+.+..+.|+ +| |+
T Consensus 220 ~vi~~~~~~~~~~~a~~lG-a~~~i~~~~~~~~~~~~v~~~--~~~g~d~vid~~G-----~~~~~~~~l~~l~-~g~G~ 290 (378)
T PLN02827 220 QIIGVDINPEKAEKAKTFG-VTDFINPNDLSEPIQQVIKRM--TGGGADYSFECVG-----DTGIATTALQSCS-DGWGL 290 (378)
T ss_pred eEEEECCCHHHHHHHHHcC-CcEEEcccccchHHHHHHHHH--hCCCCCEEEECCC-----ChHHHHHHHHhhc-cCCCE
Confidence 6999999999999998763 33222110 0000111111 1225898885543 2356888999999 88 99
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.+...
T Consensus 291 iv~~G~ 296 (378)
T PLN02827 291 TVTLGV 296 (378)
T ss_pred EEEECC
Confidence 976654
No 317
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=44.02 E-value=92 Score=26.30 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=44.1
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++.|+...+.+++. ++..... .-......+... .++..+|+|+.+..- .....++.+.|+ ++|+++.
T Consensus 214 ~vi~~~~s~~~~~~~~~~-g~~~v~~~~~~~~~~~l~~~-~~~~~~d~vld~vg~-----~~~~~~~~~~l~-~~G~~v~ 285 (367)
T cd08263 214 PIIAVDVRDEKLAKAKEL-GATHTVNAAKEDAVAAIREI-TGGRGVDVVVEALGK-----PETFKLALDVVR-DGGRAVV 285 (367)
T ss_pred eEEEEeCCHHHHHHHHHh-CCceEecCCcccHHHHHHHH-hCCCCCCEEEEeCCC-----HHHHHHHHHHHh-cCCEEEE
Confidence 389999999988888764 2322221 110000111111 234569999865332 136788999999 9999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 286 ~g~ 288 (367)
T cd08263 286 VGL 288 (367)
T ss_pred Ecc
Confidence 643
No 318
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=43.63 E-value=1e+02 Score=25.18 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
+.+|++++.+++..+.+++. ++....... .. .....+|+|+-+. .....+..+.+.|+ ++|++.
T Consensus 179 G~~vi~~~~~~~~~~~~~~~-g~~~~~~~~-------~~--~~~~~~d~vid~~-----g~~~~~~~~~~~l~-~~g~~v 242 (319)
T cd08242 179 GPDVVLVGRHSEKLALARRL-GVETVLPDE-------AE--SEGGGFDVVVEAT-----GSPSGLELALRLVR-PRGTVV 242 (319)
T ss_pred CCeEEEEcCCHHHHHHHHHc-CCcEEeCcc-------cc--ccCCCCCEEEECC-----CChHHHHHHHHHhh-cCCEEE
Confidence 55799999999999999874 333322111 11 2345689888543 22457788899999 899997
Q ss_pred EE
Q 035840 85 AW 86 (213)
Q Consensus 85 ~~ 86 (213)
+.
T Consensus 243 ~~ 244 (319)
T cd08242 243 LK 244 (319)
T ss_pred EE
Confidence 63
No 319
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=43.47 E-value=65 Score=27.38 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=44.6
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCC---CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPP---TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~---~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~ 82 (213)
+|+++|.+++-++.|++.. +....... +.....+.++ .++.+|+|+-+.. -..++.++.+.++ +| |+
T Consensus 212 ~Vi~~~~~~~~~~~a~~~G-a~~~i~~~~~~~~~~~~v~~~--~~~g~d~vid~~G-----~~~~~~~~~~~~~-~~~G~ 282 (368)
T TIGR02818 212 RIIAIDINPAKFELAKKLG-ATDCVNPNDYDKPIQEVIVEI--TDGGVDYSFECIG-----NVNVMRAALECCH-KGWGE 282 (368)
T ss_pred eEEEEcCCHHHHHHHHHhC-CCeEEcccccchhHHHHHHHH--hCCCCCEEEECCC-----CHHHHHHHHHHhh-cCCCe
Confidence 7999999999999998752 22221110 0000111111 1235888875443 2567888999998 76 99
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.+...
T Consensus 283 ~v~~g~ 288 (368)
T TIGR02818 283 SIIIGV 288 (368)
T ss_pred EEEEec
Confidence 887664
No 320
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.23 E-value=34 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=43.4
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
.-.+|+.+||.|.|...-+ ++++|..+ ..+.++.+|+|+--..+.-+.|. ..+-+. |+
T Consensus 66 ~~~~vtv~Di~p~~r~~lp--~~v~Fr~~-----------~~~~~G~~DlivDlTGlGG~~Pe-----~L~~fn-p~ 123 (254)
T COG4017 66 KADKVTVVDIHPFMRGFLP--NNVKFRNL-----------LKFIRGEVDLIVDLTGLGGIEPE-----FLAKFN-PK 123 (254)
T ss_pred ccceEEEecCCHHHHhcCC--CCccHhhh-----------cCCCCCceeEEEeccccCCCCHH-----HHhccC-Cc
Confidence 3568999999999988755 67776654 23667789999999988777653 455667 66
No 321
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=43.03 E-value=48 Score=27.16 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=41.0
Q ss_pred ccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 3 KIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 3 ~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
....+|+++|.++..++.+.+...+.....+. +. -...|+|+.+.-..- ..+.++++...++ |+..
T Consensus 21 ~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-------~~----~~~aDlVilavp~~~--~~~~~~~l~~~l~-~~~i 86 (279)
T PRK07417 21 SLGHTVYGVSRRESTCERAIERGLVDEASTDL-------SL----LKDCDLVILALPIGL--LLPPSEQLIPALP-PEAI 86 (279)
T ss_pred HCCCEEEEEECCHHHHHHHHHCCCcccccCCH-------hH----hcCCCEEEEcCCHHH--HHHHHHHHHHhCC-CCcE
Confidence 34568999999999999887653221111111 11 134799997765432 2346778888888 7744
Q ss_pred E
Q 035840 83 I 83 (213)
Q Consensus 83 l 83 (213)
+
T Consensus 87 i 87 (279)
T PRK07417 87 V 87 (279)
T ss_pred E
Confidence 4
No 322
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=42.88 E-value=1.7e+02 Score=23.91 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=44.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.++...+.+++.. +.... .........+..+ ...+.+|+|+-+.. .....++.+.|+ ++|++
T Consensus 165 G~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~~------~~~~~~~~~~l~-~~g~~ 235 (327)
T PRK10754 165 GAKLIGTVGSAQKAQRAKKAG-AWQVINYREENIVERVKEI-TGGKKVRVVYDSVG------KDTWEASLDCLQ-RRGLM 235 (327)
T ss_pred CCEEEEEeCCHHHHHHHHHCC-CCEEEcCCCCcHHHHHHHH-cCCCCeEEEEECCc------HHHHHHHHHHhc-cCCEE
Confidence 457899999999888887652 22222 1111000111122 23356898885433 246778899999 89999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
+....
T Consensus 236 v~~g~ 240 (327)
T PRK10754 236 VSFGN 240 (327)
T ss_pred EEEcc
Confidence 86643
No 323
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=42.84 E-value=1.4e+02 Score=24.68 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCC-CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPT-MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~-~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.+++-++.+++.. +.......+ .....+.. . ..+|+|+.+. .....+.++.+.|+ ++|++
T Consensus 187 G~~vi~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~--~--~~~d~vi~~~-----g~~~~~~~~~~~l~-~~G~~ 255 (333)
T cd08296 187 GFRTVAISRGSDKADLARKLG-AHHYIDTSKEDVAEALQE--L--GGAKLILATA-----PNAKAISALVGGLA-PRGKL 255 (333)
T ss_pred CCeEEEEeCChHHHHHHHHcC-CcEEecCCCccHHHHHHh--c--CCCCEEEECC-----CchHHHHHHHHHcc-cCCEE
Confidence 447999999999999997753 332222111 00001111 1 3488887532 12467889999999 99999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 256 v~~g~ 260 (333)
T cd08296 256 LILGA 260 (333)
T ss_pred EEEec
Confidence 86654
No 324
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=42.34 E-value=1.1e+02 Score=25.70 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++.++...+.+++.. +.... .........+..+ .+.+.+|+++.+..- ...+.++.+.|+ ++|++..
T Consensus 209 ~Vi~~~~~~~~~~~~~~~g-~~~vv~~~~~~~~~~l~~~-~~~~~vd~vld~~~~-----~~~~~~~~~~l~-~~G~~v~ 280 (363)
T cd08279 209 RIIAVDPVPEKLELARRFG-ATHTVNASEDDAVEAVRDL-TDGRGADYAFEAVGR-----AATIRQALAMTR-KGGTAVV 280 (363)
T ss_pred cEEEEcCCHHHHHHHHHhC-CeEEeCCCCccHHHHHHHH-cCCCCCCEEEEcCCC-----hHHHHHHHHHhh-cCCeEEE
Confidence 4888888888888876542 22222 1110011111222 234568988754331 357789999999 9999976
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 281 ~g~ 283 (363)
T cd08279 281 VGM 283 (363)
T ss_pred Eec
Confidence 654
No 325
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=42.16 E-value=87 Score=20.93 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEE
Q 035840 155 DNYFTFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLR 207 (213)
Q Consensus 155 ~~~~~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (213)
+.+..++.+.+.-.--...+.+.+.+++.+++.+.++... -..++++-+++
T Consensus 48 d~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~--V~~V~ft~fvi 98 (99)
T PF03748_consen 48 DAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKGK--VKDVYFTDFVI 98 (99)
T ss_pred HHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccCc--EEEEEEEEEEE
Confidence 5555566555433222234567777778888888876643 34566666654
No 326
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=41.21 E-value=1.1e+02 Score=25.14 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.++++++.+++..-..+.....+. .... ..+.+|+++.+.. ......++.+.|+ ++|+++
T Consensus 186 G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~---~~~~~d~vi~~~~-----~~~~~~~~~~~l~-~~G~~i 253 (330)
T cd08245 186 GFETVAITRSPDKRELARKLGADEVVDSGAEL---DEQA---AAGGADVILVTVV-----SGAAAEAALGGLR-RGGRIV 253 (330)
T ss_pred CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcc---hHHh---ccCCCCEEEECCC-----cHHHHHHHHHhcc-cCCEEE
Confidence 45899999999999988654211122111100 0011 1245888875432 1357788999999 999998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 254 ~~~~ 257 (330)
T cd08245 254 LVGL 257 (330)
T ss_pred EECC
Confidence 6643
No 327
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=40.30 E-value=1.4e+02 Score=24.78 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=49.9
Q ss_pred CeEEEEeCCHHHHHH-hhc----CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC---ChhHHHHHHHHHhc
Q 035840 6 KNVIATDTSPKQLEF-AIK----LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF---DLPQFYKQVKWVLK 77 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~-Ar~----~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk 77 (213)
.+.+.+|+|...+.. |++ +++++...-.+ ..+.-+..+| ..++-=+++.+.++.-+ +...++.++..+|+
T Consensus 107 ~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~-~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 107 LRYVPIDVSASILRATATAILREYPGLEVNALCG-DYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred ceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh-hHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCC
Confidence 478999999998876 333 57776543222 1111223333 33444456677888655 66788899999999
Q ss_pred CCCeEEEE
Q 035840 78 KPNGVIAA 85 (213)
Q Consensus 78 ~pgG~l~~ 85 (213)
||-.|.+
T Consensus 185 -pGd~~Ll 191 (321)
T COG4301 185 -PGDYFLL 191 (321)
T ss_pred -CcceEEE
Confidence 9998864
No 328
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.60 E-value=99 Score=25.73 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=40.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
+|++++-|+.-...+++.. +.... ...+... .+... .+.+.+|+|+-+.. -.....++.+.|+ ++|++..
T Consensus 190 ~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~-~~~~~vd~vld~~g-----~~~~~~~~~~~l~-~~G~~v~ 260 (341)
T cd05281 190 LVIASDPNPYRLELAKKMG-ADVVINPREEDVV-EVKSV-TDGTGVDVVLEMSG-----NPKAIEQGLKALT-PGGRVSI 260 (341)
T ss_pred EEEEECCCHHHHHHHHHhC-cceeeCcccccHH-HHHHH-cCCCCCCEEEECCC-----CHHHHHHHHHHhc-cCCEEEE
Confidence 5777777777666666542 22111 1110000 11221 23346888875432 2456788999999 9999876
Q ss_pred Ee
Q 035840 86 WT 87 (213)
Q Consensus 86 ~~ 87 (213)
..
T Consensus 261 ~g 262 (341)
T cd05281 261 LG 262 (341)
T ss_pred Ec
Confidence 54
No 329
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=39.44 E-value=1.8e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=49.3
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhc-cCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELE-QNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKP 79 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~-~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~p 79 (213)
|++....|+.++-+++.++.-++..++.... +.+....... ..+-+...+|+|+.+.=-+ +...+++.+...+. |
T Consensus 21 L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~-~g~~~~~~~~~~~~~~~~~~D~viv~vK~~--~~~~al~~l~~~l~-~ 96 (305)
T PRK05708 21 LARAGLPVRLILRDRQRLAAYQQAGGLTLVE-QGQASLYAIPAETADAAEPIHRLLLACKAY--DAEPAVASLAHRLA-P 96 (305)
T ss_pred HHhCCCCeEEEEechHHHHHHhhcCCeEEee-CCcceeeccCCCCcccccccCEEEEECCHH--hHHHHHHHHHhhCC-C
Confidence 3455678999999987777665432333221 1100000000 0011224689998554322 57788999999999 8
Q ss_pred CeEEEEEeCCC
Q 035840 80 NGVIAAWTYTM 90 (213)
Q Consensus 80 gG~l~~~~~~~ 90 (213)
+..++..-++-
T Consensus 97 ~t~vv~lQNGv 107 (305)
T PRK05708 97 GAELLLLQNGL 107 (305)
T ss_pred CCEEEEEeCCC
Confidence 98877665553
No 330
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.20 E-value=81 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEE
Q 035840 155 DNYFTFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLR 207 (213)
Q Consensus 155 ~~~~~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (213)
+.+..++++.+.-.-...++++.+++++.+++...++... -..++++-+|+
T Consensus 91 d~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~g~--V~~Vyft~fVi 141 (142)
T PRK07718 91 NIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQEGK--VEKVYITSFIL 141 (142)
T ss_pred HHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhccCc--eEEEEEEeeee
Confidence 5556666665554333345667888888888877776532 45677777664
No 331
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=39.18 E-value=1.2e+02 Score=25.50 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=48.1
Q ss_pred cccCC-eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC
Q 035840 2 AKIYK-NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 2 a~~~~-~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg 80 (213)
|+..+ .++++--|++-.+.+++...-....-.-+.......++ .....+|+|+-...- ..+.+..+.|+ +|
T Consensus 163 Ak~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~-t~g~gvDvv~D~vG~------~~~~~~l~~l~-~~ 234 (326)
T COG0604 163 AKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVREL-TGGKGVDVVLDTVGG------DTFAASLAALA-PG 234 (326)
T ss_pred HHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-cCCCCceEEEECCCH------HHHHHHHHHhc-cC
Confidence 45554 88888888888888887632111111110011111222 233469999866554 56777899999 89
Q ss_pred eEEEEEeCC
Q 035840 81 GVIAAWTYT 89 (213)
Q Consensus 81 G~l~~~~~~ 89 (213)
|+++.....
T Consensus 235 G~lv~ig~~ 243 (326)
T COG0604 235 GRLVSIGAL 243 (326)
T ss_pred CEEEEEecC
Confidence 999876553
No 332
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=39.09 E-value=41 Score=28.64 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=52.8
Q ss_pred CCeEEEEeCCHHHHHHhhcC--CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCe
Q 035840 5 YKNVIATDTSPKQLEFAIKL--PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~--~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG 81 (213)
.+.|+-+|.|.+-+.+-... ..+....++. ..+++ .-...|+|+.+-.+--- +|.-+.+++..-+| ||+
T Consensus 191 gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~----~~iee---~v~~aDlvIgaVLIpgakaPkLvt~e~vk~Mk-pGs 262 (371)
T COG0686 191 GADVTILDLNIDRLRQLDDLFGGRVHTLYSTP----SNIEE---AVKKADLVIGAVLIPGAKAPKLVTREMVKQMK-PGS 262 (371)
T ss_pred CCeeEEEecCHHHHhhhhHhhCceeEEEEcCH----HHHHH---HhhhccEEEEEEEecCCCCceehhHHHHHhcC-CCc
Confidence 57899999999888887653 2344455544 12232 23458999988888766 77888899999999 999
Q ss_pred EEE
Q 035840 82 VIA 84 (213)
Q Consensus 82 ~l~ 84 (213)
.+.
T Consensus 263 Viv 265 (371)
T COG0686 263 VIV 265 (371)
T ss_pred EEE
Confidence 886
No 333
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=38.98 E-value=37 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=24.3
Q ss_pred CceeeeeechhhccC-ChhHHHHHHHHHhcCCCeEEE
Q 035840 49 SSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 49 ~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~l~ 84 (213)
+++|.|+.++=+-=. +.-.-+.-+..+|| |||.-+
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk-~GGvWi 293 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILK-PGGVWI 293 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhcc-CCcEEE
Confidence 479999977222111 44567788999999 999754
No 334
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=38.31 E-value=21 Score=25.64 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.9
Q ss_pred eEEEEeCCHHHHHHhhc
Q 035840 7 NVIATDTSPKQLEFAIK 23 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~ 23 (213)
+|+++||+|.+.+.+++
T Consensus 24 ~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 24 RVIAFEPLPDAYEILEE 40 (143)
T ss_pred EEEEEecCHHHHHHHHH
Confidence 79999999999999886
No 335
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=38.29 E-value=1.2e+02 Score=26.58 Aligned_cols=90 Identities=18% Similarity=0.068 Sum_probs=46.0
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCc------chhhccCCCCCCceeeeeechhhc--------cCChh
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMS------ITELEQNVATQSSVDLVTIAAALH--------WFDLP 66 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~------~~d~~~~~~~~~sfDlV~~~~~~h--------w~d~~ 66 (213)
|+.+..+|+|+|++++-++..+.- .+.+.....+.+ .+.+.... .....|+|+.+---- --...
T Consensus 22 La~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii~vptp~~~~~~~dl~~v~ 99 (415)
T PRK11064 22 FASRQKQVIGVDINQHAVDTINRG-EIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLIAVPTPFKGDHEPDLTYVE 99 (415)
T ss_pred HHhCCCEEEEEeCCHHHHHHHHCC-CCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEEEcCCCCCCCCCcChHHHH
Confidence 456678999999999998875431 111111000000 00000000 112367777554431 11334
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCc
Q 035840 67 QFYKQVKWVLKKPNGVIAAWTYTMPEI 93 (213)
Q Consensus 67 ~~~~e~~rvLk~pgG~l~~~~~~~~~~ 93 (213)
.+..++.+.|+ +|-.+++.+...|..
T Consensus 100 ~~~~~i~~~l~-~g~iVI~~STv~pgt 125 (415)
T PRK11064 100 AAAKSIAPVLK-KGDLVILESTSPVGA 125 (415)
T ss_pred HHHHHHHHhCC-CCCEEEEeCCCCCCH
Confidence 55678888899 776665555545543
No 336
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=38.23 E-value=1.7e+02 Score=23.90 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=44.8
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.+++..+.+++. ++......-+.....+..+ ....+|+|+-+.+ ...+.++.+.|+ ++|++.
T Consensus 171 g~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g------~~~~~~~~~~l~-~~G~~i 240 (326)
T cd08289 171 GYEVVASTGKADAADYLKKL-GAKEVIPREELQEESIKPL--EKQRWAGAVDPVG------GKTLAYLLSTLQ-YGGSVA 240 (326)
T ss_pred CCeEEEEecCHHHHHHHHHc-CCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc------HHHHHHHHHHhh-cCCEEE
Confidence 45789999999988888765 2322221110000112222 2345888875433 246788999999 999997
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 241 ~~g~ 244 (326)
T cd08289 241 VSGL 244 (326)
T ss_pred EEee
Confidence 6653
No 337
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=38.22 E-value=1.5e+02 Score=24.55 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=45.5
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEE-ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQ-LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~-~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
.+|++++.|++..+.+++.. +... ..... ....+..+ .++..+|+|+-+... ...+.++.+.|+ ++|++.
T Consensus 193 ~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~-~~~~i~~~-~~~~~~dvvld~~g~-----~~~~~~~~~~l~-~~g~~i 263 (340)
T cd05284 193 ATVIAVDRSEEALKLAERLG-ADHVLNASDD-VVEEVREL-TGGRGADAVIDFVGS-----DETLALAAKLLA-KGGRYV 263 (340)
T ss_pred CcEEEEeCCHHHHHHHHHhC-CcEEEcCCcc-HHHHHHHH-hCCCCCCEEEEcCCC-----HHHHHHHHHHhh-cCCEEE
Confidence 58899999998888887653 2222 11111 11112222 223458988865432 457889999999 999998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 264 ~~g~ 267 (340)
T cd05284 264 IVGY 267 (340)
T ss_pred EEcC
Confidence 6653
No 338
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=38.14 E-value=21 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=25.1
Q ss_pred CceeeeeechhhccC-Ch----hHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 49 SSVDLVTIAAALHWF-DL----PQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 49 ~sfDlV~~~~~~hw~-d~----~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
..||+|+.- +|-.- ++ ...+++++|+++ |||+++.++..
T Consensus 49 ~~~Da~ylD-gFsP~~nPelWs~e~~~~l~~~~~-~~~~l~Tys~a 92 (124)
T PF05430_consen 49 ARFDAWYLD-GFSPAKNPELWSEELFKKLARLSK-PGGTLATYSSA 92 (124)
T ss_dssp T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEE-EEEEEEES--B
T ss_pred ccCCEEEec-CCCCcCCcccCCHHHHHHHHHHhC-CCcEEEEeech
Confidence 679998832 22211 22 579999999999 99999765543
No 339
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=37.59 E-value=2.1e+02 Score=22.88 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=44.5
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCC-CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPT-MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~-~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.+++..+.+++. ++.......+ .....+..+ .....+|+|+.+.+- ....++.+.|+ ++|++
T Consensus 161 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~~~------~~~~~~~~~l~-~~g~~ 231 (320)
T cd05286 161 GATVIGTVSSEEKAELARAA-GADHVINYRDEDFVERVREI-TGGRGVDVVYDGVGK------DTFEGSLDSLR-PRGTL 231 (320)
T ss_pred CCEEEEEcCCHHHHHHHHHC-CCCEEEeCCchhHHHHHHHH-cCCCCeeEEEECCCc------HhHHHHHHhhc-cCcEE
Confidence 45788999999888888764 2332221110 000111111 234469999864431 35677889999 89998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 232 v~~g~ 236 (320)
T cd05286 232 VSFGN 236 (320)
T ss_pred EEEec
Confidence 75543
No 340
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=37.56 E-value=1.8e+02 Score=24.18 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=42.7
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++-|+.-.+.+++.. +.... .........+..+ .+...+|+|+-+.. ....+.++.+.|+ ++|++..
T Consensus 188 ~v~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~l~~~-~~~~~~d~vld~~g-----~~~~~~~~~~~l~-~~g~~v~ 259 (340)
T TIGR00692 188 PVIVSDPNEYRLELAKKMG-ATYVVNPFKEDVVKEVADL-TDGEGVDVFLEMSG-----APKALEQGLQAVT-PGGRVSL 259 (340)
T ss_pred EEEEECCCHHHHHHHHHhC-CcEEEcccccCHHHHHHHh-cCCCCCCEEEECCC-----CHHHHHHHHHhhc-CCCEEEE
Confidence 3888888887777777652 22221 1110011111111 23456899886422 2457889999999 9999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
...
T Consensus 260 ~g~ 262 (340)
T TIGR00692 260 LGL 262 (340)
T ss_pred Ecc
Confidence 543
No 341
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=37.31 E-value=1.6e+02 Score=25.01 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=45.2
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCC-C-CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPP-T-MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GVI 83 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~-~-~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~l 83 (213)
+|+++|.+++.++.+++..-..+....- + .....+.++ .++.+|+|+-+.+ ....+.++.+.|+ ++ |++
T Consensus 213 ~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vid~~g-----~~~~~~~a~~~l~-~~~G~~ 284 (368)
T cd08300 213 RIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEM--TDGGVDYTFECIG-----NVKVMRAALEACH-KGWGTS 284 (368)
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHH--hCCCCcEEEECCC-----ChHHHHHHHHhhc-cCCCeE
Confidence 7999999999999998763211221110 0 011111121 2236898885433 2467888999999 87 998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.+...
T Consensus 285 v~~g~ 289 (368)
T cd08300 285 VIIGV 289 (368)
T ss_pred EEEcc
Confidence 87654
No 342
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=36.90 E-value=1.3e+02 Score=23.91 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=46.0
Q ss_pred CeEEEEeCCHHHHHHhhcC---C--CceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHHhcCC
Q 035840 6 KNVIATDTSPKQLEFAIKL---P--NIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKP 79 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~---~--~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~p 79 (213)
++|++.|+.|...+..+.. . ++.+...+. . ..+..||+|.++..+.=- -..+.++ +.+.|+ .
T Consensus 103 ~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---------~-g~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~-~ 170 (218)
T COG3897 103 AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---------I-GSPPAFDLLLAGDLFYNHTEADRLIP-WKDRLA-E 170 (218)
T ss_pred HHHHhcCCChHHHHHhhcchhhccceeEEeeccc---------c-CCCcceeEEEeeceecCchHHHHHHH-HHHHHH-h
Confidence 4788889988777776653 1 233333322 2 377789999999988533 4455556 666666 5
Q ss_pred CeE-EEEEeCCCCC
Q 035840 80 NGV-IAAWTYTMPE 92 (213)
Q Consensus 80 gG~-l~~~~~~~~~ 92 (213)
.|. +.+.+.+.+.
T Consensus 171 ~g~~vlvgdp~R~~ 184 (218)
T COG3897 171 AGAAVLVGDPGRAY 184 (218)
T ss_pred CCCEEEEeCCCCCC
Confidence 555 4444444443
No 343
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=36.79 E-value=1.3e+02 Score=25.25 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=45.4
Q ss_pred CeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCC--CCCceeeeeechhhccCChhHHHHHHHHHh
Q 035840 6 KNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVA--TQSSVDLVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~--~~~sfDlV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
++++-.|.-+.-.+.|++. +++++...|. ....| .+..+|.|+.-.---| .++..++.+|
T Consensus 131 Ghl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV-------c~~GF~~ks~~aDaVFLDlPaPw----~AiPha~~~l 199 (314)
T KOG2915|consen 131 GHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV-------CGSGFLIKSLKADAVFLDLPAPW----EAIPHAAKIL 199 (314)
T ss_pred cceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec-------ccCCccccccccceEEEcCCChh----hhhhhhHHHh
Confidence 6888899988888888861 5777776554 33333 3577898886555445 5666666688
Q ss_pred cCCCe-EEEE
Q 035840 77 KKPNG-VIAA 85 (213)
Q Consensus 77 k~pgG-~l~~ 85 (213)
| .+| +|+.
T Consensus 200 k-~~g~r~cs 208 (314)
T KOG2915|consen 200 K-DEGGRLCS 208 (314)
T ss_pred h-hcCceEEe
Confidence 8 455 5543
No 344
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=36.17 E-value=1.8e+02 Score=24.34 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCC----CcchhhccCCCCCCcee----eeeechhhccCChhHHHHHHHHHh
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPT----MSITELEQNVATQSSVD----LVTIAAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~----~~~~d~~~~~~~~~sfD----lV~~~~~~hw~d~~~~~~e~~rvL 76 (213)
..+|+++|.+++.++.|++.. +.......+ .+...+.++ -....+| .|+-+. ....++..+.++|
T Consensus 190 G~~vi~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~~~~~-t~~~g~d~~~d~v~d~~-----g~~~~~~~~~~~l 262 (349)
T TIGR03201 190 GAAVVAIDIDPEKLEMMKGFG-ADLTLNPKDKSAREVKKLIKAF-AKARGLRSTGWKIFECS-----GSKPGQESALSLL 262 (349)
T ss_pred CCeEEEEcCCHHHHHHHHHhC-CceEecCccccHHHHHHHHHhh-cccCCCCCCcCEEEECC-----CChHHHHHHHHHH
Confidence 447999999999999998763 332221110 000011111 1122344 444222 2345778889999
Q ss_pred cCCCeEEEEEeCC
Q 035840 77 KKPNGVIAAWTYT 89 (213)
Q Consensus 77 k~pgG~l~~~~~~ 89 (213)
+ +||++.+....
T Consensus 263 ~-~~G~iv~~G~~ 274 (349)
T TIGR03201 263 S-HGGTLVVVGYT 274 (349)
T ss_pred h-cCCeEEEECcC
Confidence 9 99999877654
No 345
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=35.19 E-value=1.5e+02 Score=25.12 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=45.1
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCC--CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPP--TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GVI 83 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~--~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~l 83 (213)
+|+++|.+++.++.+++..-..+..... +.....+.++ ..+.+|+|+-+.. ...++..+.+.++ +| |++
T Consensus 214 ~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~~~d~vid~~G-----~~~~~~~~~~~~~-~~~g~~ 285 (369)
T cd08301 214 RIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM--TGGGVDYSFECTG-----NIDAMISAFECVH-DGWGVT 285 (369)
T ss_pred eEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH--hCCCCCEEEECCC-----ChHHHHHHHHHhh-cCCCEE
Confidence 7999999999999998763222221110 0000111121 1235888874432 2567888899999 86 998
Q ss_pred EEEeCC
Q 035840 84 AAWTYT 89 (213)
Q Consensus 84 ~~~~~~ 89 (213)
.+....
T Consensus 286 v~~g~~ 291 (369)
T cd08301 286 VLLGVP 291 (369)
T ss_pred EEECcC
Confidence 776543
No 346
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=35.02 E-value=1.2e+02 Score=22.82 Aligned_cols=43 Identities=16% Similarity=-0.088 Sum_probs=31.6
Q ss_pred CCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035840 48 QSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 48 ~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~~~~~~ 91 (213)
...+|+|+.+.....-.+..-+.+...-|+ +.-.++|.+.+..
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~-~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKLK-GKKVALFGTAGAG 79 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHcc-CCeEEEEEecCCC
Confidence 466999999999887777777777887788 4544445566543
No 347
>PRK08177 short chain dehydrogenase; Provisional
Probab=34.72 E-value=1e+02 Score=23.89 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=32.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccC--CCCCCceeeeeechhh
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQN--VATQSSVDLVTIAAAL 60 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~--~~~~~sfDlV~~~~~~ 60 (213)
|+....+|++++-++.-++..+...++.+...|....+ +++.+ -+..+.+|.|+.+.+.
T Consensus 21 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~-~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 21 LLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPA-SLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred HHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHH-HHHHHHHHhhcCCCCEEEEcCcc
Confidence 35567799999988766655554455666666552110 11111 0223468888865543
No 348
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.56 E-value=96 Score=23.96 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEE
Q 035840 155 DNYFTFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLR 207 (213)
Q Consensus 155 ~~~~~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (213)
+.++.+|.+.+.-.-....+++.+.+++.+++.+.++... -..++|+-||+
T Consensus 131 D~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g~--V~~VyFT~FVi 181 (182)
T PRK08455 131 DIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDGF--IKNVFFTDFVV 181 (182)
T ss_pred HHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccCc--eeEEEeEeeee
Confidence 3444444444332222234557778788888888876642 45677777764
No 349
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.54 E-value=27 Score=26.90 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=47.2
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcC------CC-----------ceEEecCCCCcchhhccCCCCCCceeeeeechhhcc-
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKL------PN-----------IRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHW- 62 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~------~~-----------v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw- 62 (213)
||.++.+|+|+|++++-++..++- ++ -++.... |+++. -...|+++.+-----
T Consensus 19 lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~------~~~~a---i~~adv~~I~VpTP~~ 89 (185)
T PF03721_consen 19 LAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT------DIEEA---IKDADVVFICVPTPSD 89 (185)
T ss_dssp HHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES------EHHHH---HHH-SEEEE----EBE
T ss_pred HHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh------hhhhh---hhccceEEEecCCCcc
Confidence 477889999999999988887751 11 0111110 01110 122566654433211
Q ss_pred ----CC---hhHHHHHHHHHhcCCCeEEEEEeCCCCCcCh-HHHHhccc
Q 035840 63 ----FD---LPQFYKQVKWVLKKPNGVIAAWTYTMPEINE-SVGAVFKP 103 (213)
Q Consensus 63 ----~d---~~~~~~e~~rvLk~pgG~l~~~~~~~~~~~~-~~~~~~~~ 103 (213)
.| ..++..++.+.|+ +|-.+.+-+...|.... .+..+.++
T Consensus 90 ~~~~~Dls~v~~a~~~i~~~l~-~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 90 EDGSPDLSYVESAIESIAPVLR-PGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp TTTSBETHHHHHHHHHHHHHHC-SCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHh-hcceEEEccEEEEeeehHhhhhhhhh
Confidence 12 4688899999999 76555554545454322 34444443
No 350
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=34.15 E-value=87 Score=26.48 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=29.1
Q ss_pred CeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeee
Q 035840 6 KNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTI 56 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~ 56 (213)
.+|+|+|-.|.+++.|+++ .++.+..++...+..-+... ....++|.|++
T Consensus 45 ~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL~ 99 (310)
T PF01795_consen 45 GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL-NGINKVDGILF 99 (310)
T ss_dssp -EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT-TTTS-EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc-cCCCccCEEEE
Confidence 7999999999999999974 35666665553222222222 13456777773
No 351
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=33.82 E-value=2.5e+02 Score=22.89 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCce-EEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIR-YQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~-~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..+|+.+..|++..+.+++. ++. +... ..+.....+... .+...+|+++.+.. ...+.++.+.|+ ++|+
T Consensus 165 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~------~~~~~~~~~~l~-~~g~ 235 (334)
T PTZ00354 165 GAATIITTSSEEKVDFCKKL-AAIILIRYPDEEGFAPKVKKL-TGEKGVNLVLDCVG------GSYLSETAEVLA-VDGK 235 (334)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCcEEEecCChhHHHHHHHHH-hCCCCceEEEECCc------hHHHHHHHHHhc-cCCe
Confidence 44667788899988888764 232 1211 110000111111 23456999986543 367888999999 9999
Q ss_pred EEEEe
Q 035840 83 IAAWT 87 (213)
Q Consensus 83 l~~~~ 87 (213)
++...
T Consensus 236 ~i~~~ 240 (334)
T PTZ00354 236 WIVYG 240 (334)
T ss_pred EEEEe
Confidence 98654
No 352
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=33.79 E-value=2.5e+02 Score=22.86 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=44.1
Q ss_pred CCeEEEEeCCHHHHHHhhc-CCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIK-LPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~-~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.++...+.+++ ..-..+...........+.... +..+|+++-+.+ ...+.++.+.|+ ++|++
T Consensus 170 G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~~g------~~~~~~~~~~l~-~~G~~ 240 (329)
T cd05288 170 GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDNVG------GEILDAALTLLN-KGGRI 240 (329)
T ss_pred CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEcch------HHHHHHHHHhcC-CCceE
Confidence 4588999999988888876 3211222211100001112221 246898885543 247888999999 89998
Q ss_pred EEEe
Q 035840 84 AAWT 87 (213)
Q Consensus 84 ~~~~ 87 (213)
+...
T Consensus 241 v~~g 244 (329)
T cd05288 241 ALCG 244 (329)
T ss_pred EEEe
Confidence 7654
No 353
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.52 E-value=99 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.081 Sum_probs=18.2
Q ss_pred cccCCeEEEEeCCHHHHHHhhc
Q 035840 2 AKIYKNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~ 23 (213)
+....+|+..|++++.++.+.+
T Consensus 21 a~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 21 AVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred HhCCCcEEEEeCCHHHHHHHHH
Confidence 4556789999999999998764
No 354
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=33.09 E-value=2.3e+02 Score=23.25 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=44.5
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|+++..+++..+.+++. +++......+.....+.. ...+.+|+|+.+.+ -...+.++.+.|+ ++|+++
T Consensus 174 G~~vi~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~i~~--~~~~~vd~vl~~~~-----~~~~~~~~~~~l~-~~G~~v 244 (336)
T TIGR02817 174 GLTVIATASRPESQEWVLEL-GAHHVIDHSKPLKAQLEK--LGLEAVSYVFSLTH-----TDQHFKEIVELLA-PQGRFA 244 (336)
T ss_pred CCEEEEEcCcHHHHHHHHHc-CCCEEEECCCCHHHHHHH--hcCCCCCEEEEcCC-----cHHHHHHHHHHhc-cCCEEE
Confidence 56899999999888888764 233222111111122232 23445888874321 1456789999999 899987
Q ss_pred EE
Q 035840 85 AW 86 (213)
Q Consensus 85 ~~ 86 (213)
..
T Consensus 245 ~~ 246 (336)
T TIGR02817 245 LI 246 (336)
T ss_pred EE
Confidence 54
No 355
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=32.77 E-value=2e+02 Score=23.78 Aligned_cols=72 Identities=24% Similarity=0.202 Sum_probs=44.2
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.+++..+.+++..-..+..... .++.. -..+.+|+|+.+..- ...+.++.+.|+ ++|+++
T Consensus 193 G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~----~~~~~--~~~~~~d~v~~~~g~-----~~~~~~~~~~l~-~~G~~v 260 (337)
T cd05283 193 GAEVTAFSRSPSKKEDALKLGADEFIATKD----PEAMK--KAAGSLDLIIDTVSA-----SHDLDPYLSLLK-PGGTLV 260 (337)
T ss_pred CCeEEEEcCCHHHHHHHHHcCCcEEecCcc----hhhhh--hccCCceEEEECCCC-----cchHHHHHHHhc-CCCEEE
Confidence 457999999999999887653111111111 00000 113558888854442 235788999999 899998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 261 ~~g~ 264 (337)
T cd05283 261 LVGA 264 (337)
T ss_pred EEec
Confidence 6643
No 356
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.60 E-value=2.7e+02 Score=22.99 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=41.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccC-CCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQN-VATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~-~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.++ ..+.+++. ++.+.....+. ...+. ......+|+|+.+.. ...+.++.+.|+ ++|++
T Consensus 202 g~~vi~~~~~~-~~~~~~~~-g~~~~~~~~~~---~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~l~-~~G~~ 269 (350)
T cd08274 202 GAIVIAVAGAA-KEEAVRAL-GADTVILRDAP---LLADAKALGGEPVDVVADVVG------GPLFPDLLRLLR-PGGRY 269 (350)
T ss_pred CCEEEEEeCch-hhHHHHhc-CCeEEEeCCCc---cHHHHHhhCCCCCcEEEecCC------HHHHHHHHHHhc-cCCEE
Confidence 45788888665 77777654 23332211100 00101 123456999986544 246788999999 99998
Q ss_pred EEEe
Q 035840 84 AAWT 87 (213)
Q Consensus 84 ~~~~ 87 (213)
....
T Consensus 270 v~~g 273 (350)
T cd08274 270 VTAG 273 (350)
T ss_pred EEec
Confidence 7554
No 357
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=32.54 E-value=2.1e+02 Score=23.63 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=43.3
Q ss_pred Ce-EEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 6 KN-VIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 6 ~~-V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
.+ |++++.|++..+.+++.....+...........+... .++..+|+|+-+.+ -...+.++.+.|+ ++|++.
T Consensus 190 ~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~~~-----~~~~~~~~~~~l~-~~g~~v 262 (343)
T cd08235 190 ARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVATG-----SPEAQAQALELVR-KGGRIL 262 (343)
T ss_pred CcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEECCC-----ChHHHHHHHHHhh-cCCEEE
Confidence 45 8888888888888765422111211110000111222 23445898885433 2357888899999 899987
Q ss_pred EEe
Q 035840 85 AWT 87 (213)
Q Consensus 85 ~~~ 87 (213)
...
T Consensus 263 ~~~ 265 (343)
T cd08235 263 FFG 265 (343)
T ss_pred EEe
Confidence 654
No 358
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=32.18 E-value=1.4e+02 Score=25.26 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCeEEEEeCCHHHHH-HhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLE-FAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~-~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.+++... .+++. ++......-+ ...+.... +.+|+|+-+.+ -..++.++.+.|+ +||++
T Consensus 207 Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~~--~~~~~~~~---~~~D~vid~~g-----~~~~~~~~~~~l~-~~G~i 274 (360)
T PLN02586 207 GLKVTVISSSSNKEDEAINRL-GADSFLVSTD--PEKMKAAI---GTMDYIIDTVS-----AVHALGPLLGLLK-VNGKL 274 (360)
T ss_pred CCEEEEEeCCcchhhhHHHhC-CCcEEEcCCC--HHHHHhhc---CCCCEEEECCC-----CHHHHHHHHHHhc-CCcEE
Confidence 457888888876543 44444 3332221110 01122211 24888885443 2357888999999 99999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 275 v~vG~ 279 (360)
T PLN02586 275 ITLGL 279 (360)
T ss_pred EEeCC
Confidence 87654
No 359
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=31.83 E-value=2e+02 Score=23.79 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=44.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCce-EEecCC-CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIR-YQLTPP-TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~-~~~~~~-~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..+|++++.|++..+.+++. ++. +..... ......+..+ ..+.+|+|+.+.. ....+.+..+.|+ ++|+
T Consensus 189 G~~vi~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~--~~~~~d~vi~~~g-----~~~~~~~~~~~l~-~~g~ 259 (345)
T cd08260 189 GARVIAVDIDDDKLELAREL-GAVATVNASEVEDVAAAVRDL--TGGGAHVSVDALG-----IPETCRNSVASLR-KRGR 259 (345)
T ss_pred CCeEEEEeCCHHHHHHHHHh-CCCEEEccccchhHHHHHHHH--hCCCCCEEEEcCC-----CHHHHHHHHHHhh-cCCE
Confidence 44789999999888888764 232 221111 0010111111 1226898886533 2457888999999 9999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
++..+.
T Consensus 260 ~i~~g~ 265 (345)
T cd08260 260 HVQVGL 265 (345)
T ss_pred EEEeCC
Confidence 876543
No 360
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=31.54 E-value=2.8e+02 Score=22.44 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=44.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.+++..+.+++.. +..... .-......+... .+...+|+|+.+.+ . ....++.+.|+ ++|++
T Consensus 167 g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~g----~--~~~~~~~~~l~-~~g~~ 237 (324)
T cd08244 167 GATVVGAAGGPAKTALVRALG-ADVAVDYTRPDWPDQVREA-LGGGGVTVVLDGVG----G--AIGRAALALLA-PGGRF 237 (324)
T ss_pred CCEEEEEeCCHHHHHHHHHcC-CCEEEecCCccHHHHHHHH-cCCCCceEEEECCC----h--HhHHHHHHHhc-cCcEE
Confidence 568999999999888886542 332221 110000011111 23346999986543 1 24588899999 89998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 238 v~~g~ 242 (324)
T cd08244 238 LTYGW 242 (324)
T ss_pred EEEec
Confidence 76543
No 361
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=31.12 E-value=2.2e+02 Score=23.62 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=43.8
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
+|++++.++...+.+++.. +..... .-......+... .+. .+|+|+.+.. ....+.++.+.|+ ++|+++.
T Consensus 202 ~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~-~~d~vid~~g-----~~~~~~~~~~~l~-~~g~~v~ 272 (350)
T cd08240 202 NIIVVDIDEAKLEAAKAAG-ADVVVNGSDPDAAKRIIKA-AGG-GVDAVIDFVN-----NSATASLAFDILA-KGGKLVL 272 (350)
T ss_pred eEEEEeCCHHHHHHHHHhC-CcEEecCCCccHHHHHHHH-hCC-CCcEEEECCC-----CHHHHHHHHHHhh-cCCeEEE
Confidence 7899999999998887652 322221 110000011111 122 5888875443 2457899999999 9999876
Q ss_pred EeC
Q 035840 86 WTY 88 (213)
Q Consensus 86 ~~~ 88 (213)
.+.
T Consensus 273 ~g~ 275 (350)
T cd08240 273 VGL 275 (350)
T ss_pred ECC
Confidence 543
No 362
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=31.05 E-value=1.9e+02 Score=24.56 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=46.9
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhc----cC--ChhHHHHHHHHHhcCCC
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALH----WF--DLPQFYKQVKWVLKKPN 80 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~h----w~--d~~~~~~e~~rvLk~pg 80 (213)
+|+++|.++.-.+.+++.. +......-+.....+..+ .++.+|+|+-+..-. +. +....+.++.++|+ ++
T Consensus 203 ~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~i~~~--~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~ 278 (375)
T cd08282 203 RVYVVDHVPERLDLAESIG-AIPIDFSDGDPVEQILGL--EPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTR-PG 278 (375)
T ss_pred EEEEECCCHHHHHHHHHcC-CeEeccCcccHHHHHHHh--hCCCCCEEEECCCCcccccccccchHHHHHHHHHHhh-cC
Confidence 7889999999988888753 222211110001111222 224689998654322 21 45667999999999 99
Q ss_pred eEEEEEeC
Q 035840 81 GVIAAWTY 88 (213)
Q Consensus 81 G~l~~~~~ 88 (213)
|++...+.
T Consensus 279 g~~~~~g~ 286 (375)
T cd08282 279 GGIGIVGV 286 (375)
T ss_pred cEEEEEec
Confidence 99965543
No 363
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=30.91 E-value=53 Score=29.48 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCC-CCcchhhccCCCCCCceeeee----echhhccC--Ch-----h
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPP-TMSITELEQNVATQSSVDLVT----IAAALHWF--DL-----P 66 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~-~~~~~d~~~~~~~~~sfDlV~----~~~~~hw~--d~-----~ 66 (213)
..+++||++.|.|++.|+++ ........++ ++++ +.....-++..||++. +.. .|-+ -+ +
T Consensus 319 ~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~-~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~ 396 (482)
T KOG2352|consen 319 KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQ-RTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQ 396 (482)
T ss_pred ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHH-HHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHH
Confidence 46899999999999999983 1111111222 0000 0111113677789887 444 4544 22 3
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 035840 67 QFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 67 ~~~~e~~rvLk~pgG~l~~ 85 (213)
.++..+..+|. |.|.+.+
T Consensus 397 ~~l~~~k~~l~-p~g~f~i 414 (482)
T KOG2352|consen 397 VALQPVKMILP-PRGMFII 414 (482)
T ss_pred HHHHHHhhccC-ccceEEE
Confidence 56677888999 9999954
No 364
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=30.85 E-value=36 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.0
Q ss_pred cCCeEEEEeCCHHHHHHhhc
Q 035840 4 IYKNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~ 23 (213)
...+|+|.|+++++++.|++
T Consensus 76 ~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 76 RLRRVYASDIDEDALELARK 95 (246)
T ss_dssp GEEEEEEEES-HHHHHHHHH
T ss_pred HHHhHhcccCCHHHHHHHHH
Confidence 35689999999999999997
No 365
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=30.65 E-value=2.8e+02 Score=22.06 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.++ ..+.+++..-........ .++.. ......+|+++.+..- .....+.+.|+ ++|+++
T Consensus 169 g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~----~~~~~-~~~~~~~d~v~~~~~~------~~~~~~~~~l~-~~g~~v 235 (309)
T cd05289 169 GARVIATASAA-NADFLRSLGADEVIDYTK----GDFER-AAAPGGVDAVLDTVGG------ETLARSLALVK-PGGRLV 235 (309)
T ss_pred CCEEEEEecch-hHHHHHHcCCCEEEeCCC----Cchhh-ccCCCCceEEEECCch------HHHHHHHHHHh-cCcEEE
Confidence 44677777766 666665432112222111 01111 1234458888865432 26788899999 899987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 236 ~~g~ 239 (309)
T cd05289 236 SIAG 239 (309)
T ss_pred EEcC
Confidence 6543
No 366
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.45 E-value=1.3e+02 Score=22.72 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCCCCCcEEEEEeEEEE
Q 035840 155 DNYFTFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNEDGQSQKVARFPIYLR 207 (213)
Q Consensus 155 ~~~~~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (213)
+.+..++.+.+.-.-...++.+.+.+++.+++...+.... -..++|+-+|+
T Consensus 115 d~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~~--V~~VlFt~FVv 165 (166)
T PRK12785 115 DAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPAQ--VNAVLFKEVVI 165 (166)
T ss_pred HHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCCc--eeEEEEEeeEE
Confidence 3444444443332222234556777778888877766532 34677776664
No 367
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=30.34 E-value=2.4e+02 Score=22.65 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
...+|+.++.++...+.++...-..+...........+... .....+|+++.+..- ....++.+.++ ++|++
T Consensus 168 ~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~~~------~~~~~~~~~l~-~~g~~ 239 (328)
T cd08268 168 AGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRI-TGGKGVDVVFDPVGG------PQFAKLADALA-PGGTL 239 (328)
T ss_pred cCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHH-hCCCCceEEEECCch------HhHHHHHHhhc-cCCEE
Confidence 34578888888887777765421111111110000111111 223458998865442 35678889999 89998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
...+.
T Consensus 240 v~~g~ 244 (328)
T cd08268 240 VVYGA 244 (328)
T ss_pred EEEEe
Confidence 76543
No 368
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=30.12 E-value=1.3e+02 Score=26.70 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=45.3
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHH-HHHHHhcCCCeE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYK-QVKWVLKKPNGV 82 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~-e~~rvLk~pgG~ 82 (213)
...+|+.+|+++.....|... +.+ ..+. ++. + ...|+|+.+.. ...++. +..+.+| +|+.
T Consensus 234 ~Ga~ViV~d~dp~ra~~A~~~-G~~--v~~l-------~ea-l--~~aDVVI~aTG-----~~~vI~~~~~~~mK-~Gai 294 (425)
T PRK05476 234 LGARVIVTEVDPICALQAAMD-GFR--VMTM-------EEA-A--ELGDIFVTATG-----NKDVITAEHMEAMK-DGAI 294 (425)
T ss_pred CCCEEEEEcCCchhhHHHHhc-CCE--ecCH-------HHH-H--hCCCEEEECCC-----CHHHHHHHHHhcCC-CCCE
Confidence 356899999998876666543 332 2122 222 1 24899987653 344564 7889999 8999
Q ss_pred EEEEeCCCCCc
Q 035840 83 IAAWTYTMPEI 93 (213)
Q Consensus 83 l~~~~~~~~~~ 93 (213)
++..+..+..+
T Consensus 295 liNvG~~d~Ei 305 (425)
T PRK05476 295 LANIGHFDNEI 305 (425)
T ss_pred EEEcCCCCCcc
Confidence 88776655443
No 369
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=30.00 E-value=2.4e+02 Score=23.26 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=42.2
Q ss_pred eEEEEeCCH----HHHHHhhcCCCceEEecCCCCcchhhccCC----CCCCceeeeeechhhccCChhHH-HHHHHHHhc
Q 035840 7 NVIATDTSP----KQLEFAIKLPNIRYQLTPPTMSITELEQNV----ATQSSVDLVTIAAALHWFDLPQF-YKQVKWVLK 77 (213)
Q Consensus 7 ~V~gvD~S~----~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~----~~~~sfDlV~~~~~~hw~d~~~~-~~e~~rvLk 77 (213)
-|++|+.|+ +.+..|++++|+-=+.-|| . .| ..=..+|+|++--+ +- |.... .=++.--||
T Consensus 183 ~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDA-------r-hP~KYRmlVgmVDvIFaDva-qp-dq~RivaLNA~~FLk 252 (317)
T KOG1596|consen 183 CVYAVEFSHRSGRDLINMAKKRTNIIPIIEDA-------R-HPAKYRMLVGMVDVIFADVA-QP-DQARIVALNAQYFLK 252 (317)
T ss_pred eEEEEEecccchHHHHHHhhccCCceeeeccC-------C-CchheeeeeeeEEEEeccCC-Cc-hhhhhhhhhhhhhhc
Confidence 588999886 5777888888876555554 1 12 11235677664321 11 22222 245667799
Q ss_pred CCCeEEEEEe
Q 035840 78 KPNGVIAAWT 87 (213)
Q Consensus 78 ~pgG~l~~~~ 87 (213)
+||.|.+.-
T Consensus 253 -~gGhfvisi 261 (317)
T KOG1596|consen 253 -NGGHFVISI 261 (317)
T ss_pred -cCCeEEEEE
Confidence 899987653
No 370
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=29.91 E-value=2e+02 Score=23.80 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.+|++++.++.-...++++. +......-......+... .+.+.+|+|+-+.+. ...+.++.+.|+ ++|++..
T Consensus 193 ~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~-~~~~~~dvvid~~~~-----~~~~~~~~~~l~-~~g~~v~ 264 (344)
T cd08284 193 ARVFAVDPVPERLERAAALG-AEPINFEDAEPVERVREA-TEGRGADVVLEAVGG-----AAALDLAFDLVR-PGGVISS 264 (344)
T ss_pred ceEEEEcCCHHHHHHHHHhC-CeEEecCCcCHHHHHHHH-hCCCCCCEEEECCCC-----HHHHHHHHHhcc-cCCEEEE
Confidence 37888888887777776642 221211110000111121 233558988765332 357889999999 8999876
Q ss_pred EeCC
Q 035840 86 WTYT 89 (213)
Q Consensus 86 ~~~~ 89 (213)
....
T Consensus 265 ~g~~ 268 (344)
T cd08284 265 VGVH 268 (344)
T ss_pred ECcC
Confidence 6543
No 371
>PRK10083 putative oxidoreductase; Provisional
Probab=29.89 E-value=3e+02 Score=22.64 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=42.5
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|+++|.+++-.+.+++.. ++.... ..+.+. +.+.-....+|+|+-+.. -...+.++.+.|+ ++|+++.
T Consensus 188 ~v~~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~---~~~~~~g~~~d~vid~~g-----~~~~~~~~~~~l~-~~G~~v~ 257 (339)
T PRK10083 188 AVIVADRIDERLALAKESG-ADWVINNAQEPLG---EALEEKGIKPTLIIDAAC-----HPSILEEAVTLAS-PAARIVL 257 (339)
T ss_pred EEEEEcCCHHHHHHHHHhC-CcEEecCccccHH---HHHhcCCCCCCEEEECCC-----CHHHHHHHHHHhh-cCCEEEE
Confidence 5889999999998888752 222211 110000 111111122556664432 2457899999999 9999987
Q ss_pred EeCC
Q 035840 86 WTYT 89 (213)
Q Consensus 86 ~~~~ 89 (213)
.+..
T Consensus 258 ~g~~ 261 (339)
T PRK10083 258 MGFS 261 (339)
T ss_pred EccC
Confidence 6543
No 372
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=29.66 E-value=1.6e+02 Score=24.75 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=26.2
Q ss_pred eEEEEeCCHHHHHHhhcC--------CCceEEecCCCCcchh-hccCCCCCCceeeeeechhhc
Q 035840 7 NVIATDTSPKQLEFAIKL--------PNIRYQLTPPTMSITE-LEQNVATQSSVDLVTIAAALH 61 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~--------~~v~~~~~~~~~~~~d-~~~~~~~~~sfDlV~~~~~~h 61 (213)
+++|+|+++.-++.|++. ..|+.+....+ .. |.....++..||+..|+==||
T Consensus 128 ~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~---~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 128 SFVATDIDPKSLESARENVERNPNLESRIELRKQKNP---DNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST----SSTTTSTT--S-EEEEEE-----
T ss_pred eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCc---cccchhhhcccceeeEEecCCccc
Confidence 799999999999999972 34665543211 00 122223345688777765554
No 373
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=29.66 E-value=2.5e+02 Score=22.48 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=42.8
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCC-CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPP-TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~-~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|++++.++...+.+++. ++....... ......+... .....+|+++.+.+- .....+.+.++ ++|++
T Consensus 164 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~~g~------~~~~~~~~~~~-~~g~~ 234 (323)
T cd08241 164 GARVIAAASSEEKLALARAL-GADHVIDYRDPDLRERVKAL-TGGRGVDVVYDPVGG------DVFEASLRSLA-WGGRL 234 (323)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCceeeecCCccHHHHHHHH-cCCCCcEEEEECccH------HHHHHHHHhhc-cCCEE
Confidence 45788899888888887654 222211111 0000111111 233458998865432 35567789999 89998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 235 v~~~~ 239 (323)
T cd08241 235 LVIGF 239 (323)
T ss_pred EEEcc
Confidence 76543
No 374
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=29.60 E-value=2.6e+02 Score=22.39 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=43.4
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+++..++...+.++.. ++.... .........+... .....+|+++.+.+ ...+.++.+.++ ++|++
T Consensus 164 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~------~~~~~~~~~~l~-~~g~~ 234 (325)
T TIGR02824 164 GARVFTTAGSDEKCAACEAL-GADIAINYREEDFVEVVKAE-TGGKGVDVILDIVG------GSYLNRNIKALA-LDGRI 234 (325)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCcEEEecCchhHHHHHHHH-cCCCCeEEEEECCc------hHHHHHHHHhhc-cCcEE
Confidence 45788888888888877654 222221 1110000111111 22345999986544 235777889999 89999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 235 v~~g~ 239 (325)
T TIGR02824 235 VQIGF 239 (325)
T ss_pred EEEec
Confidence 86654
No 375
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=28.63 E-value=3.1e+02 Score=21.94 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=43.5
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
...+|+.++.++...+.+++. ++.... .........+... .+...+|+++.+.+- ..+....+.++ ++|+
T Consensus 168 ~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~~~------~~~~~~~~~l~-~~g~ 238 (325)
T cd08253 168 AGARVIATASSAEGAELVRQA-GADAVFNYRAEDLADRILAA-TAGQGVDVIIEVLAN------VNLAKDLDVLA-PGGR 238 (325)
T ss_pred cCCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCcCHHHHHHHH-cCCCceEEEEECCch------HHHHHHHHhhC-CCCE
Confidence 356889999999888887654 222221 1110011111221 234469999865432 23566678999 8999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.....
T Consensus 239 ~v~~~~ 244 (325)
T cd08253 239 IVVYGS 244 (325)
T ss_pred EEEEee
Confidence 875543
No 376
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=28.50 E-value=2.2e+02 Score=24.04 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=44.3
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCC---CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCC-eE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPT---MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPN-GV 82 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~---~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pg-G~ 82 (213)
+|+++|.++..++.+++. ++.......+ .....+.++ ..+.+|+|+-+.+- ..++.++.+.|+ |+ |+
T Consensus 211 ~Vi~~~~~~~~~~~~~~~-ga~~~i~~~~~~~~~~~~~~~~--~~~g~d~vid~~g~-----~~~~~~~~~~l~-~~~G~ 281 (365)
T cd08277 211 RIIGVDINEDKFEKAKEF-GATDFINPKDSDKPVSEVIREM--TGGGVDYSFECTGN-----ADLMNEALESTK-LGWGV 281 (365)
T ss_pred eEEEEeCCHHHHHHHHHc-CCCcEeccccccchHHHHHHHH--hCCCCCEEEECCCC-----hHHHHHHHHhcc-cCCCE
Confidence 799999999999999875 2221211110 000111221 12468998854432 357888999998 76 99
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+.+...
T Consensus 282 ~v~~g~ 287 (365)
T cd08277 282 SVVVGV 287 (365)
T ss_pred EEEEcC
Confidence 887654
No 377
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=28.14 E-value=3e+02 Score=22.09 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=42.6
Q ss_pred EEEEeCCHHHHHHhhcCCCce-EEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 8 VIATDTSPKQLEFAIKLPNIR-YQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 8 V~gvD~S~~ml~~Ar~~~~v~-~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
|+++..+++..+.+++.. +. +.......+...+.++ .+...+|+++-+... .....++.+.|+ ++|+++..
T Consensus 157 v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~-~~~~~vd~vld~~g~-----~~~~~~~~~~l~-~~g~~~~~ 228 (312)
T cd08269 157 VIAIDRRPARLALARELG-ATEVVTDDSEAIVERVREL-TGGAGADVVIEAVGH-----QWPLDLAGELVA-ERGRLVIF 228 (312)
T ss_pred EEEECCCHHHHHHHHHhC-CceEecCCCcCHHHHHHHH-cCCCCCCEEEECCCC-----HHHHHHHHHHhc-cCCEEEEE
Confidence 888888888887766542 22 1111111111112222 233458988765322 347888999999 99999866
Q ss_pred eC
Q 035840 87 TY 88 (213)
Q Consensus 87 ~~ 88 (213)
+.
T Consensus 229 g~ 230 (312)
T cd08269 229 GY 230 (312)
T ss_pred cc
Confidence 54
No 378
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=27.77 E-value=1.6e+02 Score=24.44 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=39.5
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.+|+++|.+++-++.+++..-......+. ++. + ...|+|+.+.-..- ...++.++...++ ||+.+..
T Consensus 32 ~~V~~~dr~~~~~~~a~~~g~~~~~~~~~-------~~~-~--~~aDvViiavp~~~--~~~v~~~l~~~l~-~~~iv~d 98 (307)
T PRK07502 32 GEIVGADRSAETRARARELGLGDRVTTSA-------AEA-V--KGADLVILCVPVGA--SGAVAAEIAPHLK-PGAIVTD 98 (307)
T ss_pred cEEEEEECCHHHHHHHHhCCCCceecCCH-------HHH-h--cCCCEEEECCCHHH--HHHHHHHHHhhCC-CCCEEEe
Confidence 48999999999888887642111111111 211 1 23788887665432 2455666777788 7876543
No 379
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=27.65 E-value=1.2e+02 Score=18.85 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=26.0
Q ss_pred ccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 42 EQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 42 ~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
+.++..++ -+|+.+..+.+.+ +.-++++.+.++ .||++.+.
T Consensus 29 ~~l~~~~~--tll~i~~~~~~~~-~~~~~~l~~~v~-~G~~lvl~ 69 (70)
T PF14258_consen 29 EALEADDG--TLLVIGPDLRLSE-PEEAEALLEWVE-AGNTLVLA 69 (70)
T ss_pred HHhCCCCC--EEEEEeCCCCCCc-hHHHHHHHHHHH-cCCEEEEe
Confidence 44433333 3345555555444 567788999999 79999764
No 380
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=27.46 E-value=3.3e+02 Score=22.29 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=44.6
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.+|++++.+++..+.+++.. +.......+.....+.. ...+.+|+++.+.+ ....+..+.+.|+ ++|+++.
T Consensus 176 ~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~i~~--~~~~~~d~vl~~~~-----~~~~~~~~~~~l~-~~g~~v~ 246 (336)
T cd08252 176 LTVIATASRPESIAWVKELG-ADHVINHHQDLAEQLEA--LGIEPVDYIFCLTD-----TDQHWDAMAELIA-PQGHICL 246 (336)
T ss_pred cEEEEEcCChhhHHHHHhcC-CcEEEeCCccHHHHHHh--hCCCCCCEEEEccC-----cHHHHHHHHHHhc-CCCEEEE
Confidence 68999999998888887642 33222111111111111 22345888875432 2467889999999 8999976
Q ss_pred Ee
Q 035840 86 WT 87 (213)
Q Consensus 86 ~~ 87 (213)
.+
T Consensus 247 ~g 248 (336)
T cd08252 247 IV 248 (336)
T ss_pred ec
Confidence 54
No 381
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=27.35 E-value=97 Score=24.55 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=49.3
Q ss_pred CeEEEEeCCHHHHHHh-hcCCCceEEecCCCCcchhhccCC-CCCCceeeeeechhhccC-ChhHHHHHHHHHhcCCCeE
Q 035840 6 KNVIATDTSPKQLEFA-IKLPNIRYQLTPPTMSITELEQNV-ATQSSVDLVTIAAALHWF-DLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~A-r~~~~v~~~~~~~~~~~~d~~~~~-~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~pgG~ 82 (213)
.+|+|+|++-..+..+ ++.|.+.|+.++.-....- ++.. .....--+-++-.|-|-+ ....-++-..+.|. -|-.
T Consensus 98 ~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~-eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~plls-aG~Y 175 (237)
T COG3510 98 FKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIA-EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLS-AGDY 175 (237)
T ss_pred ceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHH-HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhh-cCce
Confidence 4899999998887654 4478999998865211100 1100 122222455577777887 45566677777887 6666
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+++.+.
T Consensus 176 ~vVeDs 181 (237)
T COG3510 176 LVVEDS 181 (237)
T ss_pred EEEecc
Confidence 665543
No 382
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=27.33 E-value=42 Score=30.60 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=50.5
Q ss_pred eEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCCCCCCceeeeeechhhccC-Ch---hHHHHHHHHHh
Q 035840 7 NVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DL---PQFYKQVKWVL 76 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~---~~~~~e~~rvL 76 (213)
++++|+=+|+.+-..... ..|+.+.+ ||..|+.+....|++++ ..+.-| |- +..+..+.+.|
T Consensus 397 klyavEKNPNAivtL~~~n~~~W~~~Vtii~~-------DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fL 468 (649)
T KOG0822|consen 397 KLYAVEKNPNAIVTLQNRNFECWDNRVTIISS-------DMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFL 468 (649)
T ss_pred EEEEEecCcchhhhhhhhchhhhcCeeEEEec-------cccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhc
Confidence 678888888877766542 23444444 45999866688998875 334333 43 58899999999
Q ss_pred cCCCeEEEEEeC
Q 035840 77 KKPNGVIAAWTY 88 (213)
Q Consensus 77 k~pgG~l~~~~~ 88 (213)
| |+|..+=..|
T Consensus 469 k-pdgIsIP~sY 479 (649)
T KOG0822|consen 469 K-PDGISIPSSY 479 (649)
T ss_pred C-CCceEccchh
Confidence 9 9987764443
No 383
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.28 E-value=3.4e+02 Score=22.38 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=43.0
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAA 85 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~ 85 (213)
.|++++.++.-.+.+++.. +.... ..-......+... .++..+|+++.+.+ -...+..+.+.|+ ++|++..
T Consensus 195 ~v~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~i~~~-~~~~~~d~il~~~g-----~~~~~~~~~~~l~-~~g~~v~ 266 (345)
T cd08287 195 RIIAMSRHEDRQALAREFG-ATDIVAERGEEAVARVREL-TGGVGADAVLECVG-----TQESMEQAIAIAR-PGGRVGY 266 (345)
T ss_pred EEEEECCCHHHHHHHHHcC-CceEecCCcccHHHHHHHh-cCCCCCCEEEECCC-----CHHHHHHHHHhhc-cCCEEEE
Confidence 4888988887777777652 22222 1110011112222 23345888875432 3568899999999 9999876
Q ss_pred Ee
Q 035840 86 WT 87 (213)
Q Consensus 86 ~~ 87 (213)
..
T Consensus 267 ~g 268 (345)
T cd08287 267 VG 268 (345)
T ss_pred ec
Confidence 54
No 384
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=26.86 E-value=2.2e+02 Score=24.42 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCeEEEEeCCHHH-HHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQ-LEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~m-l~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
.++|++++.+++. .+.+++. ++......-+ ...+.+.. +.+|+|+-+.+ ...++.++.+.|+ +||++
T Consensus 202 Ga~Vi~~~~~~~~~~~~a~~l-Ga~~~i~~~~--~~~v~~~~---~~~D~vid~~G-----~~~~~~~~~~~l~-~~G~i 269 (375)
T PLN02178 202 GLRVTVISRSSEKEREAIDRL-GADSFLVTTD--SQKMKEAV---GTMDFIIDTVS-----AEHALLPLFSLLK-VSGKL 269 (375)
T ss_pred CCeEEEEeCChHHhHHHHHhC-CCcEEEcCcC--HHHHHHhh---CCCcEEEECCC-----cHHHHHHHHHhhc-CCCEE
Confidence 4579999988654 5666654 2332221110 01122211 24888885443 3457889999999 99999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 270 v~vG~ 274 (375)
T PLN02178 270 VALGL 274 (375)
T ss_pred EEEcc
Confidence 87654
No 385
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=26.71 E-value=2.8e+02 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=17.9
Q ss_pred CcccCCeEEEEeCCHHHHHHhhc
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~ 23 (213)
|+....+|+|+|.++.-++..++
T Consensus 19 La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 19 LADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred HHhcCCeEEEEECCHHHHHHhhc
Confidence 35566799999999998876553
No 386
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=26.45 E-value=3.3e+02 Score=21.57 Aligned_cols=75 Identities=17% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.++...+.+++..--.+...........+..+ .+.+.+|+++.+.. ...+.+..+.|+ ++|++.
T Consensus 145 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~~~------~~~~~~~~~~l~-~~g~~v 216 (303)
T cd08251 145 GAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRL-TGGRGVDVVINTLS------GEAIQKGLNCLA-PGGRYV 216 (303)
T ss_pred CCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH-cCCCCceEEEECCc------HHHHHHHHHHhc-cCcEEE
Confidence 4578999999888888865421112221111111111222 23456888875432 356778889999 899987
Q ss_pred EEe
Q 035840 85 AWT 87 (213)
Q Consensus 85 ~~~ 87 (213)
...
T Consensus 217 ~~~ 219 (303)
T cd08251 217 EIA 219 (303)
T ss_pred EEe
Confidence 554
No 387
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=26.31 E-value=3e+02 Score=23.24 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=43.2
Q ss_pred eEEEEeCCHHHHHHhhcCCCceEEecCCC--CcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 7 NVIATDTSPKQLEFAIKLPNIRYQLTPPT--MSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~--~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
.|++++.++...+.+++..-..+....-+ .....+.++ . ++.+|+|+-+.+ ....+.++.+.|++++|+++
T Consensus 210 ~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~-~-~~~~d~vid~~g-----~~~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 210 RIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEM-T-DGGVDYAFEVIG-----SADTLKQALDATRLGGGTSV 282 (365)
T ss_pred eEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHH-h-CCCCcEEEECCC-----CHHHHHHHHHHhccCCCEEE
Confidence 58899999999998876531122211110 000111222 1 246899985543 24577788888873599987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 283 ~~g~ 286 (365)
T cd05279 283 VVGV 286 (365)
T ss_pred EEec
Confidence 6543
No 388
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=25.67 E-value=3.6e+02 Score=21.82 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=42.0
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+.+.-+++..+.+++. ++.... ...+.....+... .+...+|+|+-+.+ . ..+.++.+.|+ ++|++
T Consensus 164 G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~d~~g----~--~~~~~~~~~l~-~~g~~ 234 (324)
T cd08292 164 GINVINLVRRDAGVAELRAL-GIGPVVSTEQPGWQDKVREA-AGGAPISVALDSVG----G--KLAGELLSLLG-EGGTL 234 (324)
T ss_pred CCeEEEEecCHHHHHHHHhc-CCCEEEcCCCchHHHHHHHH-hCCCCCcEEEECCC----C--hhHHHHHHhhc-CCcEE
Confidence 45677777777777776654 333222 1110000111111 23345899985433 2 34678899999 99999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
+....
T Consensus 235 v~~g~ 239 (324)
T cd08292 235 VSFGS 239 (324)
T ss_pred EEEec
Confidence 86643
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.75 E-value=1.3e+02 Score=24.59 Aligned_cols=22 Identities=32% Similarity=0.067 Sum_probs=17.9
Q ss_pred cccCCeEEEEeCCHHHHHHhhc
Q 035840 2 AKIYKNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~ 23 (213)
+....+|+.+|++++.++.+++
T Consensus 23 a~~G~~V~l~d~~~~~l~~~~~ 44 (287)
T PRK08293 23 AFHGFDVTIYDISDEALEKAKE 44 (287)
T ss_pred HhcCCeEEEEeCCHHHHHHHHH
Confidence 4566799999999998887764
No 390
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=24.66 E-value=3e+02 Score=22.30 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=44.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|+.++.+++..+.+++.. ++.....-+ ....+... ...+.+|+|+-+.+ ...+.++.+.|+ ++|++.
T Consensus 171 g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~-~~~~~~~~-~~~~~~d~vi~~~~------~~~~~~~~~~l~-~~g~~v 240 (325)
T cd05280 171 GYTVVALTGKEEQADYLKSLG-ASEVLDRED-LLDESKKP-LLKARWAGAIDTVG------GDVLANLLKQTK-YGGVVA 240 (325)
T ss_pred CCEEEEEeCCHHHHHHHHhcC-CcEEEcchh-HHHHHHHH-hcCCCccEEEECCc------hHHHHHHHHhhc-CCCEEE
Confidence 447899999999888887653 232221110 00011111 22345888875533 247899999999 999987
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
..+.
T Consensus 241 ~~g~ 244 (325)
T cd05280 241 SCGN 244 (325)
T ss_pred EEec
Confidence 6654
No 391
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.28 E-value=1.2e+02 Score=25.62 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCeEEEEeCCHHHHHHhhcC-----CCceEEecCCCCcchhhccCCCCCCceeeeeec
Q 035840 5 YKNVIATDTSPKQLEFAIKL-----PNIRYQLTPPTMSITELEQNVATQSSVDLVTIA 57 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-----~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~ 57 (213)
.++++|+|-.|..|+.|++. +++.++.++...+..-+. ...-.++|-|..=
T Consensus 48 ~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~--~~~i~~vDGiL~D 103 (314)
T COG0275 48 LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALK--ELGIGKVDGILLD 103 (314)
T ss_pred CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHH--hcCCCceeEEEEe
Confidence 46899999999999999983 356666665421111111 1234567777643
No 392
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.06 E-value=3.9e+02 Score=21.64 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCC--CCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPP--TMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~--~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..+|+.++.++..++.+++. ++....... ......+... ...+.+|+++.+.+ ...+.++.+.|+ ++|+
T Consensus 184 G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~------~~~~~~~~~~l~-~~G~ 254 (336)
T cd08276 184 GARVIATSSSDEKLERAKAL-GADHVINYRTTPDWGEEVLKL-TGGRGVDHVVEVGG------PGTLAQSIKAVA-PGGV 254 (336)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCCEEEcCCcccCHHHHHHHH-cCCCCCcEEEECCC------hHHHHHHHHhhc-CCCE
Confidence 45789999999888888765 222221111 0000111222 23356899886432 356788899999 9999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+...+.
T Consensus 255 ~v~~g~ 260 (336)
T cd08276 255 ISLIGF 260 (336)
T ss_pred EEEEcc
Confidence 876654
No 393
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.95 E-value=1.3e+02 Score=23.57 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHhhc----C-CCceEEecCCCCcchhhccCCCCCCceeeeeech--------hh--c-----cC-
Q 035840 5 YKNVIATDTSPKQLEFAIK----L-PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAA--------AL--H-----WF- 63 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~----~-~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~--------~~--h-----w~- 63 (213)
+...+++|++|..++.-++ . .++..++.+ +.. .+..+++|+++.+= .+ + |.
T Consensus 68 ~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~td-------l~~-~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aG 139 (209)
T KOG3191|consen 68 QALYLATDINPEALEATLETARCNRVHIDVVRTD-------LLS-GLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAG 139 (209)
T ss_pred CceEEEecCCHHHHHHHHHHHHhcCCccceeehh-------HHh-hhccCCccEEEECCCcCcCCcccchhHHHHHHHhc
Confidence 4568899999999888554 1 233333332 233 25558888877431 11 2 33
Q ss_pred --C----hhHHHHHHHHHhcCCCeEEEEEeCC
Q 035840 64 --D----LPQFYKQVKWVLKKPNGVIAAWTYT 89 (213)
Q Consensus 64 --d----~~~~~~e~~rvLk~pgG~l~~~~~~ 89 (213)
| ..+.+.++-.+|. |.|.+++....
T Consensus 140 G~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 140 GKDGREVTDRLLPQVPDILS-PRGVFYLVALR 170 (209)
T ss_pred CcchHHHHHHHHhhhhhhcC-cCceEEeeehh
Confidence 1 2355666777888 99999876544
No 394
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=23.85 E-value=96 Score=26.50 Aligned_cols=42 Identities=7% Similarity=-0.162 Sum_probs=29.8
Q ss_pred CceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEEeCCCC
Q 035840 49 SSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAWTYTMP 91 (213)
Q Consensus 49 ~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~~~~~~ 91 (213)
.++|+|+...-=.--...-.+.++.+.|+ |||.+.+.+-...
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~-~g~~i~~~G~~~~ 116 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLP-VGTDIFVVGENRS 116 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeccc
Confidence 46888875544333344566789999999 9999998876543
No 395
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=23.82 E-value=1.5e+02 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=32.7
Q ss_pred eeCHHHHHHHHhhhhHHHHHHHhCCchhhHHHHHHHHHHhCCC
Q 035840 151 VMDLDNYFTFIRSCSGYQTAKDKGVELLTDNVMDKFKVAWNED 193 (213)
Q Consensus 151 ~~t~~~~~~~l~s~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (213)
-.|..++...+.|.|-++..+...+....+ ...+|.++|+-.
T Consensus 73 glt~~dLa~~iGSks~vS~iL~~rraLTle-~ikkL~q~~gIp 114 (120)
T COG5499 73 GLTLADLANEIGSKSRVSNILSGRRALTLE-HIKKLHQRFGIP 114 (120)
T ss_pred CCcHHHHHHHhCchHHHHHHHhhhhHhhHH-HHHHHHHHhCcC
Confidence 357889999999999998887666555555 778999998864
No 396
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=23.61 E-value=4.2e+02 Score=21.79 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=43.4
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+++..++...+.+++.. +.... .........+..+ .+.+.+|+|+.+..- ...+.++.+.|+ ++|++
T Consensus 190 g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vd~vl~~~~~-----~~~~~~~~~~l~-~~g~~ 261 (341)
T cd08297 190 GLRVIAIDVGDEKLELAKELG-ADAFVDFKKSDDVEAVKEL-TGGGGAHAVVVTAVS-----AAAYEQALDYLR-PGGTL 261 (341)
T ss_pred CCeEEEEeCCHHHHHHHHHcC-CcEEEcCCCccHHHHHHHH-hcCCCCCEEEEcCCc-----hHHHHHHHHHhh-cCCEE
Confidence 447888888888888776542 22221 1110001111222 234568888742211 356788899999 99999
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 262 v~~g~ 266 (341)
T cd08297 262 VCVGL 266 (341)
T ss_pred EEecC
Confidence 86643
No 397
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.60 E-value=3.9e+02 Score=21.41 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.+++.++.+++. ++....-.. ++ +.++.+|+++-+.+- ..+.++.+.|+ ++|++.
T Consensus 157 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~-------~~--~~~~~~d~vl~~~g~------~~~~~~~~~l~-~~G~~v 219 (305)
T cd08270 157 GAHVVAVVGSPARAEGLREL-GAAEVVVGG-------SE--LSGAPVDLVVDSVGG------PQLARALELLA-PGGTVV 219 (305)
T ss_pred CCEEEEEeCCHHHHHHHHHc-CCcEEEecc-------cc--ccCCCceEEEECCCc------HHHHHHHHHhc-CCCEEE
Confidence 45789999999888888874 332221111 11 223468999865331 36788999999 899988
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 220 ~~g~ 223 (305)
T cd08270 220 SVGS 223 (305)
T ss_pred EEec
Confidence 6653
No 398
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=23.40 E-value=1.9e+02 Score=23.87 Aligned_cols=71 Identities=8% Similarity=0.000 Sum_probs=41.8
Q ss_pred cccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 2 AKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
++...+|++.|.+++-++.+++.. +... .+. +++.-.-...|+|+.+---. ....++.++...|+ +|-
T Consensus 20 ~~~g~~V~~~dr~~~~~~~l~~~g-~~~~-~s~-------~~~~~~~~~~dvIi~~vp~~--~~~~v~~~l~~~l~-~g~ 87 (298)
T TIGR00872 20 AKRGHDCVGYDHDQDAVKAMKEDR-TTGV-ANL-------RELSQRLSAPRVVWVMVPHG--IVDAVLEELAPTLE-KGD 87 (298)
T ss_pred HHCCCEEEEEECCHHHHHHHHHcC-Cccc-CCH-------HHHHhhcCCCCEEEEEcCch--HHHHHHHHHHhhCC-CCC
Confidence 455678999999999888877532 1111 111 22110112368888664433 45667788888888 775
Q ss_pred EEE
Q 035840 82 VIA 84 (213)
Q Consensus 82 ~l~ 84 (213)
.+.
T Consensus 88 ivi 90 (298)
T TIGR00872 88 IVI 90 (298)
T ss_pred EEE
Confidence 443
No 399
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=22.89 E-value=3.7e+02 Score=21.37 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=42.3
Q ss_pred cCCeEEEEeCCHHHHHHhhcCCCceEEe-cCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 4 IYKNVIATDTSPKQLEFAIKLPNIRYQL-TPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~~~v~~~~-~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
...+|+.++.++..++.++... +.... .........+... .....+|+++.+.+- ..+....+.++ ++|+
T Consensus 163 ~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~g~------~~~~~~~~~~~-~~g~ 233 (323)
T cd05276 163 LGARVIATAGSEEKLEACRALG-ADVAINYRTEDFAEEVKEA-TGGRGVDVILDMVGG------DYLARNLRALA-PDGR 233 (323)
T ss_pred cCCEEEEEcCCHHHHHHHHHcC-CCEEEeCCchhHHHHHHHH-hCCCCeEEEEECCch------HHHHHHHHhhc-cCCE
Confidence 3457888888888888876542 22111 1110000111111 123468998865542 23667788999 8999
Q ss_pred EEEEeC
Q 035840 83 IAAWTY 88 (213)
Q Consensus 83 l~~~~~ 88 (213)
+...+.
T Consensus 234 ~i~~~~ 239 (323)
T cd05276 234 LVLIGL 239 (323)
T ss_pred EEEEec
Confidence 875543
No 400
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.80 E-value=98 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.0
Q ss_pred ccCC-CCCCceeeeeechhhccCChhHHHHHHHHHhcCCCe
Q 035840 42 EQNV-ATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNG 81 (213)
Q Consensus 42 ~~~~-~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG 81 (213)
..|| ..-.++|+-+|+... |+.+++..+.+.|+ |.=
T Consensus 70 HTwPE~gyaavDiftCg~~~---~p~~a~~~L~~~l~-~~~ 106 (123)
T PRK01706 70 HTYPEKNFAAIDCYTCGTTV---EPQIAIDYIVSILK-PNE 106 (123)
T ss_pred EeCccCCeEEEEEEecCCCC---CHHHHHHHHHHHhC-CCe
Confidence 5555 334557887777655 89999999999999 883
No 401
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=22.80 E-value=1.4e+02 Score=24.07 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=37.9
Q ss_pred CCeEEEEeCCHHHHHHhhcC-------CCceEEecCCCCcchhhccCCCCCCceeeeee-chhhccCChhHHHHHHHHHh
Q 035840 5 YKNVIATDTSPKQLEFAIKL-------PNIRYQLTPPTMSITELEQNVATQSSVDLVTI-AAALHWFDLPQFYKQVKWVL 76 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~-------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~-~~~~hw~d~~~~~~e~~rvL 76 (213)
...+++.|+++.-++.|.+. +.++...+++ +..+.. +..+|.|+. +++-- -....+++-..-|
T Consensus 40 ~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg------l~~l~~-~d~~d~ivIAGMGG~--lI~~ILee~~~~l 110 (226)
T COG2384 40 ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG------LAVLEL-EDEIDVIVIAGMGGT--LIREILEEGKEKL 110 (226)
T ss_pred cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC------ccccCc-cCCcCEEEEeCCcHH--HHHHHHHHhhhhh
Confidence 56899999999999999872 3445555554 233222 336888884 33321 1234445555555
Q ss_pred c
Q 035840 77 K 77 (213)
Q Consensus 77 k 77 (213)
+
T Consensus 111 ~ 111 (226)
T COG2384 111 K 111 (226)
T ss_pred c
Confidence 5
No 402
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=22.23 E-value=4.3e+02 Score=23.57 Aligned_cols=81 Identities=15% Similarity=0.015 Sum_probs=47.2
Q ss_pred CCeEEEEeCCHHHHHHhhcC------CCceEEecCCCCcchhhccCC---CCCCceeeee-----ech-------hhccC
Q 035840 5 YKNVIATDTSPKQLEFAIKL------PNIRYQLTPPTMSITELEQNV---ATQSSVDLVT-----IAA-------ALHWF 63 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~------~~v~~~~~~~~~~~~d~~~~~---~~~~sfDlV~-----~~~-------~~hw~ 63 (213)
-+.|+|.|-+.+-+..-++. .|......++ .++| ++. +||-|. ++. ++.|-
T Consensus 266 ~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-------~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~ 337 (460)
T KOG1122|consen 266 TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-------REFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTN 337 (460)
T ss_pred CceEEecccchHHHHHHHHHHHHhCCCceEEEccCc-------ccccccccCc-ccceeeecCCCCCCcccccccccccc
Confidence 46789999998888876651 2332333343 3332 555 899887 332 22332
Q ss_pred C-----------hhHHHHHHHHHhcCCCeEEEEE-eCCCCCcC
Q 035840 64 D-----------LPQFYKQVKWVLKKPNGVIAAW-TYTMPEIN 94 (213)
Q Consensus 64 d-----------~~~~~~e~~rvLk~pgG~l~~~-~~~~~~~~ 94 (213)
. ..+.+-.+...+| |||.|... |...+.-+
T Consensus 338 k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCSI~~~EN 379 (460)
T KOG1122|consen 338 KTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCSITVEEN 379 (460)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeeecchhhh
Confidence 1 1256667778899 99998644 33344333
No 403
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=22.11 E-value=4.3e+02 Score=21.93 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=42.9
Q ss_pred CeEEEEeCCHHHHHHhhcCCCceEEec-CCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 6 KNVIATDTSPKQLEFAIKLPNIRYQLT-PPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 6 ~~V~gvD~S~~ml~~Ar~~~~v~~~~~-~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..|+++|-++.-...+.+.. ++.... .-......+..+ .+...+|+|+-+.. -...+.++.+.|+ ++|++.
T Consensus 200 ~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vdvvld~~g-----~~~~~~~~~~~l~-~~G~~v 271 (350)
T cd08256 200 KKLIVLDLKDERLALARKFG-ADVVLNPPEVDVVEKIKEL-TGGYGCDIYIEATG-----HPSAVEQGLNMIR-KLGRFV 271 (350)
T ss_pred cEEEEEcCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHH-hCCCCCCEEEECCC-----ChHHHHHHHHHhh-cCCEEE
Confidence 46888998888888777653 332221 110000111111 12335898875432 1346888999999 899987
Q ss_pred EEe
Q 035840 85 AWT 87 (213)
Q Consensus 85 ~~~ 87 (213)
...
T Consensus 272 ~~g 274 (350)
T cd08256 272 EFS 274 (350)
T ss_pred EEc
Confidence 654
No 404
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=22.01 E-value=80 Score=27.49 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=17.3
Q ss_pred cccCCeEEEEeCCHHHHHHhh
Q 035840 2 AKIYKNVIATDTSPKQLEFAI 22 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar 22 (213)
+..-++|+|||+||.|+...+
T Consensus 54 ~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 54 LAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred hcCCceEEEEeCCHHHHHHHH
Confidence 344589999999999998766
No 405
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=21.84 E-value=47 Score=26.84 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=27.8
Q ss_pred cccCCeEEEEeCCHHHHHHhhc-------C--------CCceEEecCCCCcchhhccCCCCCCceeeeeechhh
Q 035840 2 AKIYKNVIATDTSPKQLEFAIK-------L--------PNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAAL 60 (213)
Q Consensus 2 a~~~~~V~gvD~S~~ml~~Ar~-------~--------~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~ 60 (213)
|..+.+|+|+|-||-+-..-+. - ..++...+++. +-+..++++||+|+.==.|
T Consensus 94 A~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~------~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 94 ASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL------EYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp HHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC------CHCCCHSS--SEEEE--S-
T ss_pred HccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH------HHHhhcCCCCCEEEECCCC
Confidence 3346789999999987655442 1 24566777662 4445678899999954444
No 406
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=21.73 E-value=2.2e+02 Score=24.26 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCceeeeeechhhccC---ChhHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 035840 47 TQSSVDLVTIAAALHWF---DLPQFYKQVKWVLKKPNGVIAAWTYTMPE 92 (213)
Q Consensus 47 ~~~sfDlV~~~~~~hw~---d~~~~~~e~~rvLk~pgG~l~~~~~~~~~ 92 (213)
+-+++|.++...+=-|| -....+.++.|.+. ||..+++.+....+
T Consensus 324 ~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~-~gA~VifRtaae~s 371 (414)
T COG5379 324 PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAE-AGARVIFRTAAEVS 371 (414)
T ss_pred CCCCcceEEEecchhhcccchHHHHHHHHhhccC-CCcEEEEeccccee
Confidence 66789999999999999 44688899999999 99999888776554
No 407
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=21.25 E-value=1.1e+02 Score=21.56 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=27.8
Q ss_pred ccCC-CCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeE
Q 035840 42 EQNV-ATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGV 82 (213)
Q Consensus 42 ~~~~-~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~ 82 (213)
..|| ..-..+|+-+|+... ++..++..+.+.|+ |+-.
T Consensus 67 HTwPE~gyaavDiftCg~~~---~p~~a~~~l~~~f~-~~~~ 104 (112)
T TIGR03330 67 HTWPEYGYAAVDVFTCGDHS---DPEKAFEYLVEALK-PKRV 104 (112)
T ss_pred EeccCCCcEEEEEEecCCCC---CHHHHHHHHHHHhC-CCeE
Confidence 5555 344568888887654 89999999999999 8754
No 408
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=1.3e+02 Score=26.22 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=43.5
Q ss_pred eEEEEeCCHHHHHHhhcC---C---CceEEecCCCCcchhhccCCCC-CCceeeeeechhhccC-ChhHHHHHHHHHhcC
Q 035840 7 NVIATDTSPKQLEFAIKL---P---NIRYQLTPPTMSITELEQNVAT-QSSVDLVTIAAALHWF-DLPQFYKQVKWVLKK 78 (213)
Q Consensus 7 ~V~gvD~S~~ml~~Ar~~---~---~v~~~~~~~~~~~~d~~~~~~~-~~sfDlV~~~~~~hw~-d~~~~~~e~~rvLk~ 78 (213)
+|+.-|+||+..+..++. . +......|+ ..+=.. ...||+|= +--+ -|..++..+.|..|
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA-------N~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~- 145 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLNSGEDAEVINKDA-------NALLHELHRAFDVID----IDPFGSPAPFLDAALRSVR- 145 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhcCcccceeecchH-------HHHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhh-
Confidence 799999999999999862 1 111222333 111011 13344442 1112 35688999999999
Q ss_pred CCeEEEEEeCC
Q 035840 79 PNGVIAAWTYT 89 (213)
Q Consensus 79 pgG~l~~~~~~ 89 (213)
.||.|++...+
T Consensus 146 ~~G~l~vTATD 156 (380)
T COG1867 146 RGGLLCVTATD 156 (380)
T ss_pred cCCEEEEEecc
Confidence 79999876543
No 409
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=21.13 E-value=1.5e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=21.5
Q ss_pred CCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEEEE
Q 035840 48 QSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIAAW 86 (213)
Q Consensus 48 ~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~~~ 86 (213)
.+.+|++++... .. +.....-|| |||.+.+-
T Consensus 66 ~~~~D~lva~d~------~~-~~~~~~~lk-~gg~ii~n 96 (197)
T PRK06853 66 EGKADLLLAFEP------LE-ALRYLPYLK-KGGKVVVN 96 (197)
T ss_pred CCCCCEEEEeCH------HH-HHHHHHhcC-CCcEEEEE
Confidence 447999998754 23 345666789 99988543
No 410
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.04 E-value=4.3e+02 Score=21.23 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=46.5
Q ss_pred CcccCCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcc--hhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcC
Q 035840 1 LAKIYKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSI--TELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKK 78 (213)
Q Consensus 1 la~~~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~--~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~ 78 (213)
|++.+.+|+.++-+ +.++.-++. ++.+.....+... .....-+-+...+|+|+.+.=-+ +...+++.+...+.
T Consensus 10 L~~~G~~V~l~~r~-~~~~~i~~~-Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~--~~~~~l~~l~~~l~- 84 (293)
T TIGR00745 10 LARAGHDVTLLARG-EQLEALNQE-GLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY--QTEEAAALLLPLIG- 84 (293)
T ss_pred HHhCCCcEEEEecH-HHHHHHHHC-CcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch--hHHHHHHHhHhhcC-
Confidence 35556789999987 444444432 2222211110000 00011011124699998655443 67888999999999
Q ss_pred CCeEEEEEeCCC
Q 035840 79 PNGVIAAWTYTM 90 (213)
Q Consensus 79 pgG~l~~~~~~~ 90 (213)
++..+++...+.
T Consensus 85 ~~~~iv~~qNG~ 96 (293)
T TIGR00745 85 KNTKVLFLQNGL 96 (293)
T ss_pred CCCEEEEccCCC
Confidence 888877665553
No 411
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=20.93 E-value=4.5e+02 Score=21.19 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEE-ecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQ-LTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVI 83 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~-~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l 83 (213)
..+|+++..++...+.+++. ++... ..........+... .....+|+|+.+.+- ....++.+.|+ ++|++
T Consensus 163 g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~g~------~~~~~~~~~l~-~~g~~ 233 (323)
T cd05282 163 GFKTINVVRRDEQVEELKAL-GADEVIDSSPEDLAQRVKEA-TGGAGARLALDAVGG------ESATRLARSLR-PGGTL 233 (323)
T ss_pred CCeEEEEecChHHHHHHHhc-CCCEEecccchhHHHHHHHH-hcCCCceEEEECCCC------HHHHHHHHhhC-CCCEE
Confidence 45677777777777777654 22211 11110000111222 233458988865542 23457789999 99998
Q ss_pred EEEeC
Q 035840 84 AAWTY 88 (213)
Q Consensus 84 ~~~~~ 88 (213)
.....
T Consensus 234 v~~g~ 238 (323)
T cd05282 234 VNYGL 238 (323)
T ss_pred EEEcc
Confidence 75543
No 412
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=20.89 E-value=4.5e+02 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCeEEEEeCCHHHHHHhhc
Q 035840 5 YKNVIATDTSPKQLEFAIK 23 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~ 23 (213)
..+|+|+|++++-++..++
T Consensus 22 G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 22 NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCcEEEEECCHHHHHHHHc
Confidence 5689999999999999886
No 413
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=20.73 E-value=3.8e+02 Score=22.58 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCCcchhhccCCCCCCceeeeeechhhccCChhHHHHHHHHHhcCCCeEEE
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTMSITELEQNVATQSSVDLVTIAAALHWFDLPQFYKQVKWVLKKPNGVIA 84 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~d~~~~~~e~~rvLk~pgG~l~ 84 (213)
..+|++++.+++....+.+.-++.......+ ...+... . ..+|+|+-+.. ....+..+.+.|+ +||++.
T Consensus 204 G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~--~-~~~D~vid~~g-----~~~~~~~~~~~l~-~~G~iv 272 (357)
T PLN02514 204 GHHVTVISSSDKKREEALEHLGADDYLVSSD--AAEMQEA--A-DSLDYIIDTVP-----VFHPLEPYLSLLK-LDGKLI 272 (357)
T ss_pred CCeEEEEeCCHHHHHHHHHhcCCcEEecCCC--hHHHHHh--c-CCCcEEEECCC-----chHHHHHHHHHhc-cCCEEE
Confidence 3478888888877766543223332221110 0111111 1 24788774432 2457888999999 999998
Q ss_pred EEeC
Q 035840 85 AWTY 88 (213)
Q Consensus 85 ~~~~ 88 (213)
....
T Consensus 273 ~~G~ 276 (357)
T PLN02514 273 LMGV 276 (357)
T ss_pred EECC
Confidence 7654
No 414
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=20.26 E-value=5.4e+02 Score=21.83 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=43.7
Q ss_pred CCeEEEEeCCHHHHHHhhcCCCceEEecCCCC-----------------------cchhhccCCCCCC-ceeeeeechhh
Q 035840 5 YKNVIATDTSPKQLEFAIKLPNIRYQLTPPTM-----------------------SITELEQNVATQS-SVDLVTIAAAL 60 (213)
Q Consensus 5 ~~~V~gvD~S~~ml~~Ar~~~~v~~~~~~~~~-----------------------~~~d~~~~~~~~~-sfDlV~~~~~~ 60 (213)
..+|++++.|++..+.+++. ++....-..+. ....+.++ .+.. .+|+|+-+..
T Consensus 218 G~~vv~~~~s~~~~~~~~~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~g~d~vid~~g- 294 (393)
T cd08246 218 GANPVAVVSSEEKAEYCRAL-GAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDI-LGGREDPDIVFEHPG- 294 (393)
T ss_pred CCeEEEEeCCHHHHHHHHHc-CCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHH-hCCCCCCeEEEECCc-
Confidence 45788999999999999875 22211110000 00001111 1222 5888886533
Q ss_pred ccCChhHHHHHHHHHhcCCCeEEEEEeC
Q 035840 61 HWFDLPQFYKQVKWVLKKPNGVIAAWTY 88 (213)
Q Consensus 61 hw~d~~~~~~e~~rvLk~pgG~l~~~~~ 88 (213)
...+.++.+.++ ++|++.....
T Consensus 295 -----~~~~~~~~~~l~-~~G~~v~~g~ 316 (393)
T cd08246 295 -----RATFPTSVFVCD-RGGMVVICAG 316 (393)
T ss_pred -----hHhHHHHHHHhc-cCCEEEEEcc
Confidence 145788899999 8999986643
No 415
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=1.3e+02 Score=27.21 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=47.5
Q ss_pred cCCeEEEEeCCHHHHHHhhcC---CCce----EEecCCCCcchhhccCCCCCCceeeeeechhhccC-ChhHHHHHHHHH
Q 035840 4 IYKNVIATDTSPKQLEFAIKL---PNIR----YQLTPPTMSITELEQNVATQSSVDLVTIAAALHWF-DLPQFYKQVKWV 75 (213)
Q Consensus 4 ~~~~V~gvD~S~~ml~~Ar~~---~~v~----~~~~~~~~~~~d~~~~~~~~~sfDlV~~~~~~hw~-d~~~~~~e~~rv 75 (213)
...+|++-|.+++-++..++. .+++ -..+||.++ +-..+-....||+|-. --+ -+..++..+.+.
T Consensus 133 ~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l---M~~~~~~~~~FDvIDL----DPyGs~s~FLDsAvqa 205 (525)
T KOG1253|consen 133 GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL---MYEHPMVAKFFDVIDL----DPYGSPSPFLDSAVQA 205 (525)
T ss_pred chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH---HHhccccccccceEec----CCCCCccHHHHHHHHH
Confidence 356899999999999976652 2221 112333211 1222334566887751 111 235788999999
Q ss_pred hcCCCeEEEEEeCC
Q 035840 76 LKKPNGVIAAWTYT 89 (213)
Q Consensus 76 Lk~pgG~l~~~~~~ 89 (213)
++ .||.|++.+.+
T Consensus 206 v~-~gGLL~vT~TD 218 (525)
T KOG1253|consen 206 VR-DGGLLCVTCTD 218 (525)
T ss_pred hh-cCCEEEEEecc
Confidence 99 79999876544
Done!