BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035842
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 67 HGSPSGKTALHAAARE 82
G T LH AARE
Sbjct: 96 AKDKDGYTPLHLAARE 111
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 67 HGSPSGKT 74
GKT
Sbjct: 129 AQDKFGKT 136
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 69 SPSGKTALHAAARE 82
G T LH AARE
Sbjct: 65 DKDGYTPLHLAARE 78
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 67 HGSPSGKTALHAAARE 82
G T LH AARE
Sbjct: 108 AKDKDGYTPLHLAARE 123
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 69 SPSGKTALHAAARE 82
G T LH AARE
Sbjct: 77 DKDGYTPLHLAARE 90
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 67 HGSPSGKTALHAAARE 82
G T LH AARE
Sbjct: 96 AKDKDGYTPLHLAARE 111
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 67 HGSPSGKTALHAAARE 82
GKT A RE
Sbjct: 129 AQDKFGKTPFDLAIRE 144
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 69 SPSGKTALHAAARE 82
G T LH AARE
Sbjct: 65 DKDGYTPLHLAARE 78
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + VV++L D KN G+ PL++AA G LE+V +LL ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 67 HGSPSGKTALHAAAR 81
+G+T LH AAR
Sbjct: 63 AKDKNGRTPLHLAAR 77
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + VV++L D KN G+ PL++AA G LE+V +LL ++
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 95
Query: 67 HGSPSGKTALHAAAR 81
+G+T LH AAR
Sbjct: 96 AKDKNGRTPLHLAAR 110
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 81
G+ PL++AA G LE+V +LL ++ +G+T LH AAR
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + VV++L D KN G+ PL++AA G LE+V +LL ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 67 HGSPSGKTALHAAAR 81
+G+T LH AAR
Sbjct: 63 AKDKNGRTPLHLAAR 77
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 81
G+ PL++AA G LE+V +LL ++ +G+T LH AAR
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
++N T LH A G + +VE+L + D +A YG PL++AA G LE+V+VLL
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 61 TYTFMSHGSPSGKTALHAAARE 82
++ +G T LH AA E
Sbjct: 102 YGADVNAFDMTGSTPLHLAADE 123
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + G PL++AA++G LE+V+VLL ++
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G VV++L + D P + + GK PL++AAE G E+V +LLS +
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 67 HGSPSGKTALHAAAR 81
GKT LH AA
Sbjct: 98 AKDSDGKTPLHLAAE 112
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G VV++L + D P + + GK PL++AAE G E+V +LLS +
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 67 HGSPSGKTALHAA 79
G+T L A
Sbjct: 131 TSDSDGRTPLDLA 143
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + NYG PL++AA+ G LE+V+VLL ++
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTALHAAA 80
G T LH AA
Sbjct: 108 AKDYEGFTPLHLAA 121
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLL 59
+N T LH A +G + +VE+L + D +AK+Y G PL++AA G LE+V+VLL
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADV--NAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 60 STYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 134 KYGADVNAQDKFGKTAF 150
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFMSH 67
L EA G V IL D +A ++ G PL++AA+ G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA 75
Query: 68 GSPSGKTALHAAA 80
G T LH AA
Sbjct: 76 WDNYGATPLHLAA 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFM 65
+T LH A +G + +VE+L + D + YG PL++AA+ G LE+V+VLL +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
++ T LH A G + +VE+L + D +A G PL++AA G LE+V+VLL
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 62 YTFMSHGSPSGKTALHAAA 80
++ G T LH AA
Sbjct: 103 GADVNATDTYGFTPLHLAA 121
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + + GK PL++AA KG LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DKMGDTPLHLAA 88
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D S ++G PL++AA++G LE+V+VLL ++
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + + G PL++AA +G LE+V+VLL ++
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 67 HGSPSGKTALHAAAR 81
G T LH AA+
Sbjct: 108 ASDSHGFTPLHLAAK 122
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFMSH 67
L EA G V IL D +A+++ G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 68 GSPSGKTALHAAAR 81
G T LH AAR
Sbjct: 76 KDSLGVTPLHLAAR 89
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + + G PL++AA++G LE+V+VLL ++
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 67 HGSPSGKTALHAAAR 81
+G T LH AA
Sbjct: 108 ANDHNGFTPLHLAAN 122
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + VVE+L + D + N G PL++AA G LE+V+VLL ++
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D S + G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DSLGVTPLHLAA 88
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A G + +VE+L + D S +G PL++AA G LE+V+VLL
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 62 YTFMSHGSPSGKTALHAAAR 81
++ G T LH AA+
Sbjct: 103 GADVNAMDSDGMTPLHLAAK 122
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + + G PL++AA+ G LE+V+VLL ++
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D +A N G PL++AA G LE+V+VLL +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DVFGYTPLHLAA 88
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVL 58
M+++ T LH A G + +VE+L + D K +GK ++ + G ++ ++L
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
M++ T LH A G + +VE+L + D S ++G+ PL++AA G LE+V+VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 61 TYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 102 YGADVNAQDKFGKTAF 117
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + + G PL++AA++G LE+V+VLL ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 69 SPSGKTALHAAA 80
G+T LH AA
Sbjct: 77 DSWGRTPLHLAA 88
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N+ T LH A +G + +VE+L + D S G PL++AA G LE+V+VLL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT-GITPLHLAAATGHLEIVEVLLKH 102
Query: 62 YTFMSHGSPSGKTALHAAAR 81
++ G T LH AA+
Sbjct: 103 GADVNAYDNDGHTPLHLAAK 122
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + N G PL++AA+ G LE+V+VLL ++
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + N G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 69 SPSGKTALHAAA 80
+G T LH AA
Sbjct: 77 DLTGITPLHLAA 88
Score = 28.5 bits (62), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVL 58
+N+ +T LH A +G + +VE+L + D K +GK ++ + G ++ ++L
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + +VE+L + D + YG PL++AA++G LE+V+VLL ++
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+++ +T LH A G +VE+L + D + G PL++AA+ G LE+V+VLL
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD-GWTPLHLAADNGHLEIVEVLLKY 102
Query: 62 YTFMSHGSPSGKTALHAAA 80
++ G T LH AA
Sbjct: 103 GADVNAQDAYGLTPLHLAA 121
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + +VE+L + D S + G PL++AA G LE+V+VLL ++
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 67 HGSPSGKTALHAAA 80
+G T LH AA
Sbjct: 100 AYDRAGWTPLHLAA 113
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + N G PL++AA G LE+V+VLL ++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 69 SPSGKTALHAAA 80
+G T LH AA
Sbjct: 69 DSAGITPLHLAA 80
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLL 59
T LH A G + +VE+L + D + G PL++AA G LE+V+VLL
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLL 125
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
M++ T LH A G + +VE+L + D S +G+ PL++AA G LE+V+VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 61 TYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 102 YGADVNAQDKFGKTAF 117
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + + G PL++AA++G LE+V+VLL ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 69 SPSGKTALHAAA 80
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTF 64
+T LH A G + +VE+L + D +A ++ G PL++AA++G LE+V+VLL
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADV--NALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 65 MSHGSPSGKTALHAAA 80
++ G T LH AA
Sbjct: 106 VNADDTIGSTPLHLAA 121
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFM 65
+T LH A G + +VE+L + D + G PL++AA+ G LE+V+VLL +
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + YG PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 69 SPSGKTALHAAAR 81
SG T LH AA+
Sbjct: 77 DFSGSTPLHLAAK 89
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G +V++L K D P + + G+ PL+ AAE G E+V +LLS +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 67 HGSPSGKTALHAAA 80
G+T LH AA
Sbjct: 98 AKDSDGRTPLHYAA 111
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G +V++L K D P + + G+ PL+ AAE G E+V +LLS +
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 67 HGSPSGKTALHAA 79
G+T L A
Sbjct: 131 TSDSDGRTPLDLA 143
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA +G+ V+ L D P ++ + G+ PL+ AAE G E+V +LLS +
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 69 SPSGKTALHAAA 80
G+T LH AA
Sbjct: 67 DSDGRTPLHYAA 78
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + N+G PL++AA +G LE+V+VLL ++
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D ++ G PL++AA+ G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DNFGITPLHLAA 88
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH + +G + ++E+L + D S K+ G PL++AA +G LE+V+VLL ++
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKS-GWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 67 HGSPSGKTALHAAARE 82
G T LH AA +
Sbjct: 108 AMDYQGYTPLHLAAED 123
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFM 65
T LH A G + +VE+L + D +A +Y G PL++AAE G LE+V+VLL +
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 38 YGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 80
+G PL++ G LE+++VLL ++ SG T LH AA
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLL 59
M++ T LH A G + +VE+L + D +A++ +G+ PL++AA G LE+V+VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADV--NARDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 60 STYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 101 EYGADVNAQDKFGKTAF 117
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D N G PL++AA +G LE+V+VLL ++
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + G PL++AA G LE+V+VLL ++
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 67 HGSPSGKTALHAAA 80
+G T LH AA
Sbjct: 108 AKDDNGITPLHLAA 121
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D +A G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DTLGSTPLHLAA 88
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L R D N G PL++AA G LE+V+VLL ++
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 67 HGSPSGKTALHAAA 80
+G T L+ AA
Sbjct: 96 AKDATGITPLYLAA 109
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLL 59
++ T LH A G + +VE+L + D +AK+ G PLY+AA G LE+V+VLL
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADV--NAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 60 STYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 122 KHGADVNAQDKFGKTAF 138
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + +YG+ PL+MAA G LE+V+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 69 SPSGKTALHAAA 80
+G T LH AA
Sbjct: 65 DTNGTTPLHLAA 76
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFM 65
T LH A +G VV++L K D +AK+ G+ PL+ AAE G E+V +L+S +
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Query: 66 SHGSPSGKTALHAAA 80
+ G+T LH AA
Sbjct: 97 NAKDSDGRTPLHHAA 111
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFM 65
T LH A +G VV++L K D +AK+ G+ PL+ AAE G E+V +L+S +
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 66 SHGSPSGKTALHAA 79
+ G+T L A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA +G+ V+ L D S + G+ PL+ AAE G E+V +L+S ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 69 SPSGKTALHAAA 80
G+T LH AA
Sbjct: 67 DSDGRTPLHHAA 78
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLS 60
+++ T LH A G +V++L K D +AK+ G+ PL+ AA++G E+V +L+S
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADV--NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 61 TYTFMSHGSPSGKTALHAAARE 82
++ G+T LH AA+E
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKE 113
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA +G+ V+ L D S + G+ PL+ AA++G E+V +L+S ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 69 SPSGKTALHAAARE 82
G+T LH AA+E
Sbjct: 67 DSDGRTPLHYAAKE 80
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLS 60
+++ T LH A G +V++L K D +AK+ G+ PL+ AA++G E+V +L+S
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADV--NAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 61 TYTFMSHGSPSGKTALHAA 79
++ G+T L A
Sbjct: 125 KGADVNTSDSDGRTPLDLA 143
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + +VE+L + D + + G PL +AA G LE+V+VLL ++
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 67 HGSPSGKTALHAAA 80
G T LH AA
Sbjct: 108 ANDMEGHTPLHLAA 121
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T L A G + +VE+L + D + G PL++AA G LE+V+VLL ++
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 80
G PL++AA G LE+V+VLL ++ +G T L AA
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 EKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVL 58
E +T LH A G + +VE+L + D K +GK ++ + G ++ ++L
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 165
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G + +VE+L + D + N G+ PL++AA LE+V+VLL ++
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNY-GKMPLYMAAEKGCLEMVDVLLSTYTFMSH 67
L EA G V IL+ D +A +Y G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 68 GSPSGKTALHAAA 80
+G+T LH AA
Sbjct: 76 TGNTGRTPLHLAA 88
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFM 65
+T LH A G + +VE+L + D + +G PL++AA G LE+V+VLL +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + +VE+L + D + G PL++AA G LE+V+VLL ++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTALHAAA 80
G T LH AA
Sbjct: 108 AVDTWGDTPLHLAA 121
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 80
G PL++AA G LE+V+VLL ++ G T LH AA
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFM 65
+T LH A G + +VE+L + D + +G PL++AA G LE+V+VLL +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A +G + +VE+L + D + G PL++AA G LE+V+VLL ++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTALHAAA 80
G T LH AA
Sbjct: 108 AVDTWGDTPLHLAA 121
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + + G PL++AA G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDAS-GLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DIMGSTPLHLAA 88
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ ++ V +IL R + + G PL +AA MV+ L++
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 62 YTFMSHGSPSGKTALHAAA 80
++ SGKTALH AA
Sbjct: 141 DADINAADNSGKTALHWAA 159
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 VVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAA 79
+VE L D D +A N GK L+ AA E V++LL + +T L A
Sbjct: 133 MVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLA 191
Query: 80 ARE 82
ARE
Sbjct: 192 ARE 194
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
M + T LH A +G V V E+L +D +P +A G PL++A L++V +LL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 61 TYTFMSHGSP-----SGKTALHAAARE 82
GSP +G T LH AA++
Sbjct: 201 -----RGGSPHSPAWNGYTPLHIAAKQ 222
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 82
G PL++AA++G EMV +LLS + G+ SG T LH A+E
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A+ H ++ +V++L + P+S G PL++AA++ +E+ LL +
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 67 HGSPSGKTALHAAARE 82
S G T LH AA+E
Sbjct: 240 AESVQGVTPLHLAAQE 255
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 4 EKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYT 63
+ T LH A G ++V++L + + P A G PL++AA +G +E V LL
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 64 FMSHGSPSGKTALHAAAR 81
+ + G T LH AA+
Sbjct: 138 SQACMTKKGFTPLHVAAK 155
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N + T LH A G V + L + AK+ + PL+ AA G MV +LL
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLEN 102
Query: 62 YTFMSHGSPSGKTALHAAARE 82
+ + +G T LH AARE
Sbjct: 103 NANPNLATTAGHTPLHIAARE 123
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G +V +L K + K+ G PL++ A++G + + DVL+ +
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 67 HGSPSGKTALHAAA 80
+ G T LH A+
Sbjct: 306 ATTRMGYTPLHVAS 319
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A G V V L K+ K G PL++AA+ G + + ++LL +
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 67 HGSPSGKTALHAA 79
+G T LH A
Sbjct: 174 AAGKNGLTPLHVA 186
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH G V V ++L + + + G PL++A+ G +++V LL ++
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 67 HGSPSGKTALHAAARE 82
+ G + LH AA++
Sbjct: 339 AKTKLGYSPLHQAAQQ 354
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 NTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFM 65
NT LH A + + +VE+L + D + N G PL++AA G LE+V+VLL +
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 66 SHGSPSGKTAL 76
+ GKTA
Sbjct: 107 NAQDKFGKTAF 117
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D + + G PL++AA+ LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 69 SPSGKTALHAAA 80
G T LH AA
Sbjct: 77 DNDGSTPLHLAA 88
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVL 58
+N+ +T LH A G + +VE+L + D K +GK ++ + G ++ ++L
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK-FGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 4 EKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYT 63
+ NT LH A +G V+ L K D +K+ G PL++AA+ G E+V +LL+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 64 FMSHGSPSGKTALHAAAR 81
++ S G T H A +
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T L+ A HG + +VE+L + D + G PL++AA G LE+ +VLL ++
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLLSTYTFMSH 67
L EA G V IL D +AK+ YG PLY+A G LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 68 GSPSGKTALHAAA 80
G T LH AA
Sbjct: 76 VDAIGFTPLHLAA 88
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+NE+N LH A G V + EIL D ++ +G PL++AA + + V + LS
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSR 199
Query: 62 YTFMSHGSPSGKTALHAAA 80
+ ++ + G+T L A+
Sbjct: 200 DSDVTLKNKEGETPLQCAS 218
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 18 VHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 77
V +V++L K D N + L+ AA GC+++ ++LL+ + + G + LH
Sbjct: 124 VDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 78 AAARE 82
AARE
Sbjct: 183 IAARE 187
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 5 KNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTF 64
K + LH A G V + +L + + +++ + PL AAE LE V L+
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 65 MSHGSPSGKTALHAAARE 82
+ G T LH AA++
Sbjct: 70 VDPKDAEGSTCLHLAAKK 87
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
M ++ L EA G V IL D KN G PL++AA G LE+V +LL
Sbjct: 2 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLE 60
Query: 61 TYTFMSHGSPSGKTAL 76
++ GKTA
Sbjct: 61 AGADVNAQDKFGKTAF 76
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
NN + T LH A+ + E L D P G PL++A E+GCL V VL +
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 62 YT------FMSHGSPSGKTALHAAA 80
T + + +G T LH A+
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLAS 122
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLL 59
N +T LH A HG + +VE+L D G+ L++A + ++V +LL
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
NN + T LH A+ + E L D P G PL++A E+GCL V VL +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 62 YT------FMSHGSPSGKTALHAAA 80
T + + +G T LH A+
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLAS 125
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLL 59
N +T LH A HG + +VE+L D G+ L++A + ++V +LL
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
M ++ L EA G V IL D KN G PL++AA G LE+V +LL
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLE 78
Query: 61 TYTFMSHGSPSGKTAL 76
+ GKTA
Sbjct: 79 AGADVXAQDKFGKTAF 94
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D K+ G PL++AA +G LE+V+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 69 SPSGKTAL 76
GKTA
Sbjct: 65 DKFGKTAF 72
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMS 66
T LH A + + +VE+L + D + G+ PL++ A G LE+V+VLL ++
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 67 HGSPSGKTAL 76
GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
L EA G V IL D K G PL++AA LE+V+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDK-VGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 69 SPSGKTALHAAA 80
G+T LH A
Sbjct: 77 DAIGETPLHLVA 88
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N+ T LH A G + VE L + D P + G PL+ A G L++V++LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 62 YTFMSHGSPSGKTALHAAAR 81
++ + LH AA+
Sbjct: 66 KALVNTTGYQNDSPLHDAAK 85
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
T LHEA HG + VVE+L + + PL+ AA+ G +++V +LLS
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLLS 60
+ + T LH A G +VE L + P + K+ G PL++AA G E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 61 TYTFMSHGSPSGKTALHAAA 80
++ + +G T LH AA
Sbjct: 95 KGAHVNAVNQNGCTPLHYAA 114
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 19 HVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHA 78
H + ++ + P + +Y ++ AA KG L+MV +LL + G T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 79 AARE 82
A E
Sbjct: 179 ACDE 182
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLLS 60
+ + T LH A G +VE L + P + K+ G PL++AA G E+V LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 95
Query: 61 TYTFMSHGSPSGKTALHAAA 80
++ + +G T LH AA
Sbjct: 96 KGAQVNAVNQNGCTPLHYAA 115
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 19 HVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHA 78
H + ++ + P + +Y ++ AA KG L+M+ +LL + G T LH
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Query: 79 AARE 82
A E
Sbjct: 180 ACDE 183
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLLS 60
+ + T LH A G +VE L + P + K+ G PL++AA G E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 94
Query: 61 TYTFMSHGSPSGKTALHAAA 80
++ + +G T LH AA
Sbjct: 95 KGAQVNAVNQNGCTPLHYAA 114
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 19 HVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHA 78
H + ++ + P + +Y ++ AA KG L+M+ +LL + G T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 79 AARE 82
A E
Sbjct: 179 ACDE 182
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKN-YGKMPLYMAAEKGCLEMVDVLLS 60
+ + T LH A G +VE L + P + K+ G PL++AA G E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 61 TYTFMSHGSPSGKTALHAAA 80
++ + +G T LH AA
Sbjct: 95 KGAHVNAVNQNGCTPLHYAA 114
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 19 HVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHA 78
H + ++ + P + +Y ++ AA KG L+MV +LL + G T LH
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 79 AARE 82
A E
Sbjct: 179 ACDE 182
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 3 NEKNTTLHEAMCHGSV--------HVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEM 54
N K HE H +V V E+L RK + K++ PL++AAE+ ++
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF-MTPLHVAAERAHNDV 262
Query: 55 VDVLLSTYTFMSHGSPSGKTALHAAA 80
++VL M+ G+TALH AA
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAA 288
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLL 59
+ K+T LH A + V +V++L + D ++ G +PL+ A G E+ ++LL
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL 111
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N ++ LH A G VV+ L + P G PL A G E+V +LL
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 62 YTFMSHGSPSGKTALHAAARE 82
++ + G TALH A E
Sbjct: 175 GASINASNNKGNTALHEAVIE 195
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEIL 24
NN+ NT LHEA+ V VVE+L
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELL 204
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ + V +IL R + + G PL +AA M++ L+++
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 62 YTFMSHGSPSGKTALH 77
+ ++ GK+ALH
Sbjct: 115 HADVNAVDDLGKSALH 130
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N + +T LH A+ H +V +L D G+ PL++A E ++++LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 62 YTFMSHGSPSGKTALHAA 79
+ G+T L +A
Sbjct: 215 GADPTARMYGGRTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N + +T LH A+ H +V +L D G+ PL++A E ++++LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 62 YTFMSHGSPSGKTALHAA 79
+ G+T L +A
Sbjct: 215 GADPTARMYGGRTPLGSA 232
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 32 PYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 82
P++ G PL++AA+ G +VLL + +T LH AA E
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
LH A +G E+L R K + PL+MAA +G +V+VLL ++
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 69 SPSGKTALHAA 79
TALH A
Sbjct: 97 DMLKMTALHWA 107
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 TTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKM-PLYMAAEKGCLEMVDVLL 59
T LH A G ++VE+L + D +AK+ KM L+ A E E+V++L+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGAD--VNAKDMLKMTALHWATEHNHQEVVELLI 120
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ + V +IL R + + G PL +AA M++ L+++
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 62 YTFMSHGSPSGKTALH 77
+ ++ GK+ALH
Sbjct: 112 HADVNAVDDLGKSALH 127
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ + V +IL R + + G PL +AA M++ L+++
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 62 YTFMSHGSPSGKTALH 77
+ ++ GK+ALH
Sbjct: 147 HADVNAVDDLGKSALH 162
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ + V +IL R + + G PL +AA M++ L+++
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 62 YTFMSHGSPSGKTALH 77
+ ++ GK+ALH
Sbjct: 147 HADVNAVDDLGKSALH 162
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+N T LH A+ + V +IL R + + G PL +AA M++ L+++
Sbjct: 88 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 62 YTFMSHGSPSGKTALH 77
+ ++ GK+ALH
Sbjct: 148 HADVNAVDDLGKSALH 163
>pdb|4GL3|A Chain A, Crystal Structure Of A Putative Glucoamylase
(Bacuni_03963) From Bacteroides Uniformis Atcc 8492 At
2.01 A Resolution
Length = 424
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 10 HEAMCHGSVHVVEILSRKDPDYPYSAKNYGK 40
H+ H H+V IL P YP + Y K
Sbjct: 188 HQIKGHNECHIVYILGASSPTYPIAESVYHK 218
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
MN +T LH A HG +V+ L + D + +G +PL+ A G ++ + L++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 61 TYTFMS 66
+S
Sbjct: 127 NGALVS 132
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 4 EKNTTLHEAMCHGSVHVVEILSRKDPDY------------PYSAKNYGKMPLYMAAEKGC 51
E T LH A+ + +V++V L + P++ YG+ PL AA G
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 52 LEMVDVLLSTYTFMSHGSPSGKTALH 77
E+V +L+ + G T LH
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 MNNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLS 60
MN +T LH A HG +V+ L + D + +G +PL+ A G ++ + L++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 61 TYTFMS 66
+S
Sbjct: 122 NGALVS 127
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 9 LHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLSTYTFMSHG 68
LH A G + ++E L K D K++ PL A +G + V +LLS +
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 69 SPSGKTALHA 78
P G TAL A
Sbjct: 98 GPDGLTALEA 107
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N+E T LH A+C G +V+ L + + +A + G PL+ AA +++ L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
N+E T LH A+C G +V+ L + + +A + G PL+ AA +++ L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+ E T L A HG + VVE L + D K + L +A KG ++V +LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDC 91
Query: 62 YTFMSHGSPSGKTAL 76
++ +G T L
Sbjct: 92 GVDVNEYDWNGGTPL 106
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+ E T L A HG + VVE L + D K + L +A KG ++V +LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDC 89
Query: 62 YTFMSHGSPSGKTAL 76
++ +G T L
Sbjct: 90 GVDVNEYDWNGGTPL 104
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 2 NNEKNTTLHEAMCHGSVHVVEILSRKDPDYPYSAKNYGKMPLYMAAEKGCLEMVDVLLST 61
+ E T L A HG + VVE L + D K + L +A KG ++V +LL
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDC 107
Query: 62 YTFMSHGSPSGKTAL 76
++ +G T L
Sbjct: 108 GVDVNEYDWNGGTPL 122
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 39 GKMPLYMAAEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 80
G L++AA KG E++ +L+ ++ G T LHAAA
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,485,418
Number of Sequences: 62578
Number of extensions: 78763
Number of successful extensions: 395
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 179
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)